Title: 3D Visualization of Option Greeks and Volatility Skew
Description: Generates a 3D graph which plots the volatility skew of a stock or a selected stock option parameter over time.
The default setting plots the net parameter position of a double vertical spread over time.
Author: John T. Buynak
Maintainer: John T. Buynak <jbuynak94@gmail.com>
Diff between visualR versions 2.0.1 dated 2019-05-05 and 2.0.2 dated 2019-08-20
DESCRIPTION | 9 ++++----- MD5 | 14 +++++++------- R/visualize.R | 4 ++-- build/vignette.rds |binary inst/doc/visualr.Rmd | 2 +- inst/doc/visualr.html | 4 ++-- man/visualize.Rd | 13 +++++++------ vignettes/visualr.Rmd | 2 +- 8 files changed, 24 insertions(+), 24 deletions(-)
Title: Scoring Rules for Parametric and Simulated Distribution
Forecasts
Description: Dictionary-like reference for computing scoring rules in a wide
range of situations. Covers both parametric forecast distributions (such as
mixtures of Gaussians) and distributions generated via simulation.
Author: Alexander Jordan, Fabian Krueger, Sebastian Lerch
Maintainer: Fabian Krueger <Fabian.Krueger83@gmail.com>
Diff between scoringRules versions 0.9.6 dated 2019-05-27 and 1.0.0 dated 2019-08-20
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++---------- build/vignette.rds |binary inst/CITATION | 31 +++++++++++++++++++------------ inst/doc/article.Rnw | 19 +++++++++---------- inst/doc/article.pdf |binary inst/doc/gettingstarted.html | 4 ++-- man/ar_ms.Rd | 7 ++++--- man/run_mcstudy.Rd | 4 ++-- vignettes/article.Rnw | 19 +++++++++---------- vignettes/bibliography.bib | 36 ++++++++++++++++++++++++------------ 11 files changed, 85 insertions(+), 66 deletions(-)
Title: Methods for Joint Dimension Reduction and Clustering
Description: A class of methods that combine dimension reduction and clustering of continuous, categorical or mixed-type data. For continuous data, the package contains implementations of factorial K-means (Vichi and Kiers 2001; <DOI:10.1016/S0167-9473(00)00064-5>) and reduced K-means (De Soete and Carroll 1994; <DOI:10.1007/978-3-642-51175-2_24>); both methods that combine principal component analysis with K-means clustering. For categorical data, the package provides MCA K-means (Hwang, Dillon and Takane 2006; <DOI:10.1007/s11336-004-1173-x>), i-FCB (Iodice D'Enza and Palumbo 2013, <DOI:10.1007/s00180-012-0329-x>) and Cluster Correspondence Analysis (van de Velden, Iodice D'Enza and Palumbo 2017; <DOI:10.1007/s11336-016-9514-0>), which combine multiple correspondence analysis with K-means. For mixed-type data, it provides mixed Reduced K-means and mixed Factorial K-means (van de Velden, Iodice D'Enza and Markos 2019; <DOI:10.1002/wics.1456>), which combine PCA for mixed-type data with K-means.
Author: Angelos Markos [aut, cre], Alfonso Iodice D'Enza [aut], Michel van de Velden [ctb]
Maintainer: Angelos Markos <amarkos@gmail.com>
Diff between clustrd versions 1.3.2 dated 2019-07-11 and 1.3.4 dated 2019-08-20
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/clu_means.R | 2 +- R/clusmca.R | 4 ++-- R/outOfIndependence.r | 13 ++++++++----- R/plot.clusmca.R | 31 +++++++++++++++++++++++++------ R/plot.cluspca.R | 8 ++++---- R/plot.cluspcamix.R | 8 ++++---- man/plot.clusmca.Rd | 4 +++- man/plot.cluspca.Rd | 4 +++- man/plot.cluspcamix.Rd | 3 ++- 11 files changed, 66 insertions(+), 39 deletions(-)
Title: Genetic Association Models for X-Chromosome SNPS on Continuous,
Binary and Survival Outcomes
Description: The expression of X-chromosome undergoes three possible biological processes: X-chromosome
inactivation (XCI), escape of the X-chromosome inactivation (XCI-E),and skewed X-chromosome
inactivation (XCI-S). To analyze the X-linked genetic association for phenotype such as
continuous, binary, and time-to-event outcomes with the actual process unknown, we propose a unified
approach of maximizing the likelihood or partial likelihood over all of the potential biological
processes. The methods are described in Wei Xu, Meiling Hao (2017) <doi:10.1002/gepi.22097>. And
also see Dongxiao Han, Meiling Hao, Lianqiang Qu, Wei Xu (2019) <doi:10.1177/0962280219859037>.
Author: Wei Xu [aut],
Meiling Hao [aut],
Yi Zhu [cre]
Maintainer: Yi Zhu <yizhu87@gmail.com>
Diff between xlink versions 1.0.0 dated 2019-07-03 and 1.0.1 dated 2019-08-20
DESCRIPTION | 9 +- MD5 | 20 ++--- NEWS.md | 7 + R/MAF.R | 8 +- R/select_output.R | 188 ++++++++++++++++++++++++++++----------------------- R/xlink_fit.R | 47 ++++++------ inst/doc/xlink.Rmd | 15 ---- inst/doc/xlink.html | 25 ++++-- man/select_output.Rd | 2 man/xlink_fit.Rd | 2 vignettes/xlink.Rmd | 15 ---- 11 files changed, 178 insertions(+), 160 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Author: Rahul Satija [aut] (<https://orcid.org/0000-0001-9448-8833>),
Andrew Butler [aut] (<https://orcid.org/0000-0003-3608-0463>),
Paul Hoffman [aut, cre] (<https://orcid.org/0000-0002-7693-8957>),
Tim Stuart [aut] (<https://orcid.org/0000-0002-3044-0897>),
Jeff Farrell [ctb],
Shiwei Zheng [ctb] (<https://orcid.org/0000-0001-6682-6743>),
Christoph Hafemeister [ctb] (<https://orcid.org/0000-0001-6365-8254>),
Patrick Roelli [ctb],
Yuhan Hao [ctb] (<https://orcid.org/0000-0002-1810-0822>)
Maintainer: Paul Hoffman <nygcSatijalab@nygenome.org>
Diff between Seurat versions 3.0.2 dated 2019-06-14 and 3.1.0 dated 2019-08-20
DESCRIPTION | 23 MD5 | 108 +- NAMESPACE | 20 NEWS.md | 30 R/RcppExports.R | 4 R/clustering.R | 276 ++++- R/convenience.R | 3 R/differential_expression.R | 25 R/dimensional_reduction.R | 176 ++- R/generics.R | 23 R/integration.R | 1483 +++++++++++++++++++++++++------- R/objects.R | 354 +++++++ R/preprocessing.R | 371 ++++++-- R/tree.R | 7 R/utilities.R | 229 +++- R/visualization.R | 511 ++++++++--- R/zzz.R | 16 README.md | 9 man/ALRAChooseKPlot.Rd | 4 man/AnchorSet-class.Rd | 2 man/Assays.Rd |only man/BuildClusterTree.Rd | 8 man/CellScatter.Rd | 4 man/CollapseEmbeddingOutliers.Rd |only man/ColorDimSplit.Rd |only man/DietSeurat.Rd | 8 man/DoHeatmap.Rd | 11 man/DotPlot.Rd | 4 man/FeaturePlot.Rd | 20 man/FeatureScatter.Rd | 4 man/FindClusters.Rd | 7 man/FindIntegrationAnchors.Rd | 60 - man/FindNeighbors.Rd | 21 man/FindTransferAnchors.Rd | 18 man/GetResidual.Rd | 12 man/IntegrateData.Rd | 14 man/LogNormalize.Rd | 4 man/MapQuery.Rd |only man/MixingMetric.Rd | 11 man/PairwiseIntegrateReference.Rd |only man/PrepSCTIntegration.Rd |only man/Reductions.Rd |only man/RelativeCounts.Rd | 4 man/RunALRA.Rd | 31 man/RunCCA.Rd | 8 man/RunLSI.Rd | 6 man/RunUMAP.Rd | 31 man/SelectIntegrationFeatures.Rd | 10 man/Seurat-package.Rd | 11 man/SplitObject.Rd | 4 man/TransferData.Rd | 19 man/VizDimLoadings.Rd | 13 src/RcppExports.cpp | 13 src/data_manipulation.cpp | 7 src/data_manipulation.h | 1 tests/testthat/test_data_manipulation.R | 14 tests/testthat/test_objects.R | 30 tests/testthat/test_preprocessing.R | 19 tests/testthat/test_visualization.R |only 59 files changed, 3185 insertions(+), 916 deletions(-)
Title: Semi-Parametric Dimension Reduction Models Using Orthogonality
Constrained Optimization
Description: Utilize an orthogonality constrained optimization algorithm of Wen & Yin (2013) <DOI:10.1007/s10107-012-0584-1> to solve a variety of dimension reduction problems in the semiparametric framework, such as Ma & Zhu (2012) <DOI:10.1080/01621459.2011.646925>, Ma & Zhu (2013) <DOI:10.1214/12-AOS1072>, Sun, Zhu, Wang & Zeng (2017) <arXiv:1704.05046> and Zhou & Zhu (2018+) <arXiv:1802.06156>. It also serves as a general purpose optimization solver for problems with orthogonality constraints. Parallel computing for approximating the gradient is enabled through `OpenMP'.
Author: Ruilin Zhao, Ruoqing Zhu, Jiyang Zhang, Wenzhuo Zhou and Peng Xu
Maintainer: Ruoqing Zhu <teazrq@gmail.com>
Diff between orthoDr versions 0.5 dated 2018-03-25 and 0.6.2 dated 2019-08-20
orthoDr-0.5/orthoDr/man/predict.Rd |only orthoDr-0.6.2/orthoDr/DESCRIPTION | 16 - orthoDr-0.6.2/orthoDr/MD5 | 93 ++++--- orthoDr-0.6.2/orthoDr/NAMESPACE | 2 orthoDr-0.6.2/orthoDr/R/RcppExports.R | 76 ++++++ orthoDr-0.6.2/orthoDr/R/distance.r | 13 - orthoDr-0.6.2/orthoDr/R/orthoDr_pdose.r |only orthoDr-0.6.2/orthoDr/R/orthoDr_reg.r | 8 orthoDr-0.6.2/orthoDr/R/orthoDr_surv.r | 4 orthoDr-0.6.2/orthoDr/R/ortho_optim.r | 245 ++++++++++----------- orthoDr-0.6.2/orthoDr/R/pSAVE.r |only orthoDr-0.6.2/orthoDr/R/predict.r | 100 +++++++- orthoDr-0.6.2/orthoDr/R/print.r | 12 - orthoDr-0.6.2/orthoDr/R/skcm.r | 2 orthoDr-0.6.2/orthoDr/inst/CITATION | 68 +++-- orthoDr-0.6.2/orthoDr/inst/NEWS | 12 + orthoDr-0.6.2/orthoDr/man/distance.Rd | 2 orthoDr-0.6.2/orthoDr/man/dosepred.Rd |only orthoDr-0.6.2/orthoDr/man/gen_solver.Rd | 4 orthoDr-0.6.2/orthoDr/man/orthoDr_pdose.Rd |only orthoDr-0.6.2/orthoDr/man/orthoDr_reg.Rd | 6 orthoDr-0.6.2/orthoDr/man/orthoDr_surv.Rd | 4 orthoDr-0.6.2/orthoDr/man/ortho_optim.Rd | 4 orthoDr-0.6.2/orthoDr/man/pSAVE.Rd |only orthoDr-0.6.2/orthoDr/man/pdose_direct_solver.Rd |only orthoDr-0.6.2/orthoDr/man/pdose_semi_solver.Rd |only orthoDr-0.6.2/orthoDr/man/phd_solver.Rd | 4 orthoDr-0.6.2/orthoDr/man/predict.orthoDr.Rd |only orthoDr-0.6.2/orthoDr/man/predict_orthoDr_pdose.Rd |only orthoDr-0.6.2/orthoDr/man/predict_orthoDr_reg.Rd | 2 orthoDr-0.6.2/orthoDr/man/predict_orthoDr_surv.Rd | 2 orthoDr-0.6.2/orthoDr/man/save_solver.Rd | 4 orthoDr-0.6.2/orthoDr/man/sir_solver.Rd | 4 orthoDr-0.6.2/orthoDr/man/skcm.melgene.Rd | 2 orthoDr-0.6.2/orthoDr/man/surv_dm_solver.Rd | 4 orthoDr-0.6.2/orthoDr/man/surv_dn_solver.Rd | 4 orthoDr-0.6.2/orthoDr/man/surv_forward_solver.Rd | 4 orthoDr-0.6.2/orthoDr/src/Makevars | 2 orthoDr-0.6.2/orthoDr/src/Makevars.win | 4 orthoDr-0.6.2/orthoDr/src/RcppExports.cpp | 76 ++++++ orthoDr-0.6.2/orthoDr/src/gen_solver.cpp | 34 ++ orthoDr-0.6.2/orthoDr/src/orthoDr_gen.h |only orthoDr-0.6.2/orthoDr/src/orthoDr_pdose.h |only orthoDr-0.6.2/orthoDr/src/orthoDr_reg.h |only orthoDr-0.6.2/orthoDr/src/orthoDr_surv.h |only orthoDr-0.6.2/orthoDr/src/pdose_direct_solver.cpp |only orthoDr-0.6.2/orthoDr/src/pdose_kernel_dose.cpp |only orthoDr-0.6.2/orthoDr/src/pdose_semi_solver.cpp |only orthoDr-0.6.2/orthoDr/src/reg_local_solver.cpp | 52 ++++ orthoDr-0.6.2/orthoDr/src/reg_phd_solver.cpp | 25 ++ orthoDr-0.6.2/orthoDr/src/reg_save_solver.cpp | 31 ++ orthoDr-0.6.2/orthoDr/src/reg_seff_solver.cpp | 27 ++ orthoDr-0.6.2/orthoDr/src/reg_sir_solver.cpp | 25 ++ orthoDr-0.6.2/orthoDr/src/surv_dm_solver.cpp | 3 orthoDr-0.6.2/orthoDr/src/surv_dn_solver.cpp | 3 orthoDr-0.6.2/orthoDr/src/surv_forward_solver.cpp | 3 56 files changed, 719 insertions(+), 267 deletions(-)
Title: Kernel Machine Score Test for Semi-Competing Risks
Description: Kernel Machine Score Test for Pathway Analysis in the Presence of
Semi-Competing Risks. Method is detailed in: Neykov, Hejblum & Sinnott (2018)
<doi: 10.1177/0962280216653427>.
Author: Matey Neykov [aut],
Boris P Hejblum [aut, cre],
Jennifer A Sinnot [aut]
Maintainer: Boris P Hejblum <boris.hejblum@u-bordeaux.fr>
Diff between kernscr versions 1.0.3 dated 2016-06-28 and 1.0.5 dated 2019-08-20
kernscr-1.0.3/kernscr/README |only kernscr-1.0.5/kernscr/DESCRIPTION | 27 kernscr-1.0.5/kernscr/LICENSE | 678 ++++++++++++------------- kernscr-1.0.5/kernscr/MD5 | 70 +- kernscr-1.0.5/kernscr/NEWS | 4 kernscr-1.0.5/kernscr/R/Ahat.R | 48 - kernscr-1.0.5/kernscr/R/M_vec.R | 148 ++--- kernscr-1.0.5/kernscr/R/PI_0.R | 34 - kernscr-1.0.5/kernscr/R/PI_1.R | 36 - kernscr-1.0.5/kernscr/R/PI_2.R | 48 - kernscr-1.0.5/kernscr/R/VTM.R | 26 kernscr-1.0.5/kernscr/R/compute_all_tests.R | 552 ++++++++++---------- kernscr-1.0.5/kernscr/R/dM.R | 22 kernscr-1.0.5/kernscr/R/findRhoInterval.R | 206 +++---- kernscr-1.0.5/kernscr/R/kerneval.R | 266 ++++----- kernscr-1.0.5/kernscr/R/kernscr-package.R | 8 kernscr-1.0.5/kernscr/R/lambda.R | 114 ++-- kernscr-1.0.5/kernscr/R/plot_kernscr.R | 296 +++++----- kernscr-1.0.5/kernscr/R/sim_SCR_data.R | 152 ++--- kernscr-1.0.5/kernscr/R/vijver.R | 18 kernscr-1.0.5/kernscr/README.md |only kernscr-1.0.5/kernscr/inst/CITATION | 21 kernscr-1.0.5/kernscr/man/Ahat.Rd | 5 kernscr-1.0.5/kernscr/man/M_vec.Rd | 1 kernscr-1.0.5/kernscr/man/PI_0.Rd | 1 kernscr-1.0.5/kernscr/man/PI_1.Rd | 1 kernscr-1.0.5/kernscr/man/PI_2.Rd | 1 kernscr-1.0.5/kernscr/man/VTM.Rd | 1 kernscr-1.0.5/kernscr/man/cancer_pathways.Rd | 19 kernscr-1.0.5/kernscr/man/compute_all_tests.Rd | 17 kernscr-1.0.5/kernscr/man/dM.Rd | 5 kernscr-1.0.5/kernscr/man/findRhoInterval.Rd | 11 kernscr-1.0.5/kernscr/man/kernelEval.Rd | 7 kernscr-1.0.5/kernscr/man/kernscr-package.Rd | 17 kernscr-1.0.5/kernscr/man/lambda.Rd | 1 kernscr-1.0.5/kernscr/man/plot_kernscr.Rd | 3 kernscr-1.0.5/kernscr/man/sim_SCR_data.Rd | 5 37 files changed, 1433 insertions(+), 1436 deletions(-)
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data
sets, regression models, and more. The code to create the tables is
concise and highly customizable. Data frames can be summarized with
any function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers. The package is enhanced when the 'gt' package is installed.
Use this code to install: 'remotes::install_github("rstudio/gt")'.
Author: Daniel D. Sjoberg [aut, cre] (<https://orcid.org/0000-0003-0862-2018>),
Margie Hannum [aut] (<https://orcid.org/0000-0002-2953-0449>),
Karissa Whiting [aut] (<https://orcid.org/0000-0002-4683-1868>),
Emily C. Zabor [aut] (<https://orcid.org/0000-0002-1402-4498>),
Michael Curry [ctb] (<https://orcid.org/0000-0002-0261-4044>),
Esther Drill [ctb] (<https://orcid.org/0000-0002-3315-4538>),
Jessica Flynn [ctb] (<https://orcid.org/0000-0001-8310-6684>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 1.2.0 dated 2019-08-19 and 1.2.1 dated 2019-08-20
DESCRIPTION | 6 MD5 | 30 +-- NEWS.md | 8 R/add_p.R | 46 ++-- R/utils-add_p.R | 41 +++- inst/doc/tbl_regression.R | 3 inst/doc/tbl_regression.Rmd | 6 inst/doc/tbl_regression.html | 351 +++++++++++++++++------------------ inst/doc/tbl_summary.R | 3 inst/doc/tbl_summary.Rmd | 6 inst/doc/tbl_summary.html | 421 +++++++++++++++++++++---------------------- man/add_p.Rd | 14 - man/figures/add_p_ex2.png |binary tests/testthat/test-add_p.R | 10 + vignettes/tbl_regression.Rmd | 6 vignettes/tbl_summary.Rmd | 6 16 files changed, 496 insertions(+), 461 deletions(-)
Title: Distributed-Lag Linear Structural Equation Models
Description: Inference functionalities for distributed-lag linear structural equation models (DLSEMs). DLSEMs are Markovian structural causal models where each factor of the joint probability distribution is a distributed-lag linear regression (Magrini, 2018 <doi:10.2478/bile-2018-0012>; Magrini et al., 2019 <doi:10.1007/s11135-019-00855-z>). DLSEMs account for temporal delays in the dependence relationships among the variables and allow to perform dynamic causal inference by assessing causal effects at different time lags. Endpoint-constrained quadratic, quadratic decreasing and gamma lag shapes are available.
Author: Alessandro Magrini
Maintainer: Alessandro Magrini <alessandro.magrini@unifi.it>
Diff between dlsem versions 2.4.2 dated 2019-05-27 and 2.4.3 dated 2019-08-20
Changelog | 52 DESCRIPTION | 10 MD5 | 39 NAMESPACE | 11 R/dlsem.r | 2329 ++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/dlsem_vignette.R | 38 inst/doc/dlsem_vignette.Rnw | 119 +- inst/doc/dlsem_vignette.pdf |binary man/as.graphNEL.Rd | 4 man/auto.lagPlot.Rd | 5 man/autoCode.Rd |only man/causalEff.Rd | 2 man/dlsem-package.Rd | 10 man/dlsem.Rd | 159 +- man/isIndep.Rd | 4 man/lagPlot.Rd | 8 man/lagShapes.Rd |only man/quec.lag.Rd | 16 man/residualPlot.Rd |only man/unirootTest.Rd | 20 vignettes/dlsem_vignette.Rnw | 119 +- 22 files changed, 1683 insertions(+), 1262 deletions(-)
Title: Normalizing Transformation Functions
Description: Estimate a suite of normalizing transformations, including
a new adaptation of a technique based on ranks which can guarantee
normally distributed transformed data if there are no ties: ordered
quantile normalization (ORQ). ORQ normalization combines a rank-mapping
approach with a shifted logit approximation that allows
the transformation to work on data outside the original domain. It is
also able to handle new data within the original domain via linear
interpolation. The package is built to estimate the best normalizing
transformation for a vector consistently and accurately. It implements
the Box-Cox transformation, the Yeo-Johnson transformation, three types
of Lambert WxF transformations, and the ordered quantile normalization
transformation. It also estimates the normalization efficacy of other
commonly used transformations.
Author: Ryan Andrew Peterson [aut, cre]
Maintainer: Ryan Andrew Peterson <ryan.a.peterson@cuanschutz.edu>
Diff between bestNormalize versions 1.4.0 dated 2019-05-13 and 1.4.2 dated 2019-08-20
DESCRIPTION | 12 MD5 | 106 +- NAMESPACE | 124 +-- NEWS.md | 131 +-- R/arcsinh_x.R | 200 ++-- R/bestNormalize-package.R | 22 R/bestNormalize.R | 892 ++++++++++----------- R/binarize.R | 214 ++--- R/boxcox.R | 324 +++---- R/data.R | 36 R/exp_x.R | 218 ++--- R/lambert.R | 314 +++---- R/log_x.R | 256 +++--- R/no_transform.R | 220 ++--- R/orderNorm.R | 460 +++++------ R/plots.R | 262 +++--- R/sqrt_x.R | 228 ++--- R/yeojohnson.R | 384 ++++----- README.md | 294 +++---- build/vignette.rds |binary inst/CITATION | 27 inst/doc/bestNormalize.R | 436 +++++----- inst/doc/bestNormalize.Rmd | 796 +++++++++---------- inst/doc/bestNormalize.html | 1484 ++++++++++++++++++------------------ man/arcsinh_x.Rd | 128 +-- man/autotrader.Rd | 58 - man/bestNormalize-package.Rd | 52 - man/bestNormalize.Rd | 320 +++---- man/binarize.Rd | 124 +-- man/boxcox.Rd | 146 +-- man/exp_x.Rd | 126 +-- man/lambert.Rd | 186 ++-- man/log_x.Rd | 150 +-- man/no_transform.Rd | 132 +-- man/orderNorm.Rd | 202 ++-- man/plot.bestNormalize.Rd | 100 +- man/sqrt_x.Rd | 134 +-- man/yeojohnson.Rd | 162 +-- tests/testthat.R | 8 tests/testthat/test_arcsinh_x.R | 126 +-- tests/testthat/test_bestNormalize.R | 212 ++--- tests/testthat/test_binarize.R | 112 +- tests/testthat/test_bn_parallel.R | 84 +- tests/testthat/test_boxcox.R | 140 +-- tests/testthat/test_exp_x.R | 126 +-- tests/testthat/test_lambert.R | 190 ++-- tests/testthat/test_log_x.R | 170 ++-- tests/testthat/test_no_transform.R | 126 +-- tests/testthat/test_orderNorm.R | 64 - tests/testthat/test_plot_methods.R | 76 - tests/testthat/test_print_methods.R | 110 +- tests/testthat/test_sqrt_x.R | 146 +-- tests/testthat/test_yeojohnson.R | 130 +-- vignettes/bestNormalize.Rmd | 796 +++++++++---------- 54 files changed, 6042 insertions(+), 6034 deletions(-)
Title: The Ball Mapper Algorithm
Description: The core algorithm is described in "Ball mapper: a shape summary for topological data analysis" by Pawel Dlotko, (2019) <arXiv:1901.07410>. Please consult the following youtube video <https://www.youtube.com/watch?v=M9Dm1nl_zSQfor> the idea of functionality. Ball Mapper provide a topologically accurate summary of a data in a form of an abstract graph. To create it, please provide the coordinates of points (in the points array), values of a function of interest at those points (can be initialized randomly if you do not have it) and the value epsilon which is the radius of the ball in the Ball Mapper construction. It can be understood as the minimal resolution on which we use to create the model of the data.
Author: Pawel Dlotko [aut, cre]
Maintainer: Pawel Dlotko <pdlotko@gmail.com>
Diff between BallMapper versions 0.1.0 dated 2019-07-26 and 0.2.0 dated 2019-08-20
DESCRIPTION | 11 MD5 | 26 NAMESPACE | 12 R/BallMapper.R | 519 +++++++++- R/test_BallMapper.R | 46 man/ColorIgraphPlot.Rd | 17 man/GrayscaleIgraphPlot.Rd | 14 man/colorByAllVariables.Rd |only man/colorByAverageValueOfOtherVariable.Rd |only man/colorByStDevValueOfOtherVariable.Rd |only man/color_by_distance_to_reference_points.Rd |only man/coordinates_of_points_in_subcollection.Rd |only man/find_dominant_difference_using_averages.Rd |only man/find_dominant_difference_using_averages_normalized_by_sd.Rd |only man/normalize_to_average_0_stdev_1.Rd |only man/normalize_to_min_0_max_1.Rd |only man/pointToBallList.Rd | 4 man/points_covered_by_landmarks.Rd |only man/readBallMapperGraphFromFile.Rd |only man/storeBallMapperGraphInFile.Rd |only 20 files changed, 619 insertions(+), 30 deletions(-)
Title: Record 'HTTP' Calls to Disk
Description: Record test suite 'HTTP' requests and replays them during
future runs. A port of the Ruby gem of the same name
(<https://github.com/vcr/vcr/>). Works by hooking into the 'webmockr'
R package for matching 'HTTP' requests by various rules ('HTTP' method,
'URL', query parameters, headers, body, etc.), and then caching
real 'HTTP' responses on disk in 'cassettes'. Subsequent 'HTTP' requests
matching any previous requests in the same 'cassette' use a cached
'HTTP' response.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between vcr versions 0.2.6 dated 2019-02-12 and 0.3.0 dated 2019-08-20
vcr-0.2.6/vcr/inst/doc/vcr_vignette.R |only vcr-0.2.6/vcr/inst/doc/vcr_vignette.Rmd |only vcr-0.2.6/vcr/inst/doc/vcr_vignette.html |only vcr-0.2.6/vcr/vignettes/vcr_vignette.Rmd |only vcr-0.3.0/vcr/DESCRIPTION | 10 vcr-0.3.0/vcr/MD5 | 76 +++--- vcr-0.3.0/vcr/NEWS.md | 21 + vcr-0.3.0/vcr/R/cassette_class.R | 119 ++++++++- vcr-0.3.0/vcr/R/error_suggestions.R | 18 - vcr-0.3.0/vcr/R/errors.R | 4 vcr-0.3.0/vcr/R/http_interaction_list.R | 12 - vcr-0.3.0/vcr/R/insert_cassette.R | 7 vcr-0.3.0/vcr/R/request_handler-crul.R | 50 ++++ vcr-0.3.0/vcr/R/request_handler-httr.R | 42 +++ vcr-0.3.0/vcr/R/request_handler.R | 29 ++ vcr-0.3.0/vcr/R/request_matcher_registry.R | 2 vcr-0.3.0/vcr/R/use_cassette.R | 11 vcr-0.3.0/vcr/R/vcr-package.R | 2 vcr-0.3.0/vcr/R/vcr_setup.R | 2 vcr-0.3.0/vcr/R/zzz.R | 6 vcr-0.3.0/vcr/README.md | 10 vcr-0.3.0/vcr/build/vignette.rds |binary vcr-0.3.0/vcr/inst/doc/configuration.Rmd | 2 vcr-0.3.0/vcr/inst/doc/configuration.html | 120 +++++----- vcr-0.3.0/vcr/inst/doc/request_matching.Rmd | 2 vcr-0.3.0/vcr/inst/doc/request_matching.html | 120 +++++----- vcr-0.3.0/vcr/inst/doc/vcr.R |only vcr-0.3.0/vcr/inst/doc/vcr.Rmd |only vcr-0.3.0/vcr/inst/doc/vcr.html |only vcr-0.3.0/vcr/man/Cassette.Rd | 5 vcr-0.3.0/vcr/man/RequestHandler.Rd | 2 vcr-0.3.0/vcr/man/RequestHandlerCrul.Rd | 50 ++++ vcr-0.3.0/vcr/man/RequestHandlerHttr.Rd | 21 + vcr-0.3.0/vcr/man/insert_cassette.Rd | 9 vcr-0.3.0/vcr/man/use_cassette.Rd | 9 vcr-0.3.0/vcr/man/vcr.Rd | 2 vcr-0.3.0/vcr/tests/testthat/test-Cassette.R | 3 vcr-0.3.0/vcr/tests/testthat/test-RequestHandler.R |only vcr-0.3.0/vcr/tests/testthat/test-ause_cassette_match_requests_on.R |only vcr-0.3.0/vcr/tests/testthat/test-ause_cassette_re_record.R |only vcr-0.3.0/vcr/tests/testthat/test-cassette_options.R |only vcr-0.3.0/vcr/tests/testthat/test-errors.R | 14 + vcr-0.3.0/vcr/vignettes/configuration.Rmd | 2 vcr-0.3.0/vcr/vignettes/request_matching.Rmd | 2 vcr-0.3.0/vcr/vignettes/vcr.Rmd |only 45 files changed, 569 insertions(+), 215 deletions(-)
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
and cache management.
Author: Jonathan Callahan [aut, cre],
Spencer Pease [aut],
Thomas Bergamaschi [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.2.0 dated 2019-07-18 and 0.3.1 dated 2019-08-20
MazamaCoreUtils-0.2.0/MazamaCoreUtils/R/utils-time.R |only MazamaCoreUtils-0.2.0/MazamaCoreUtils/tests/testthat/index.html |only MazamaCoreUtils-0.2.0/MazamaCoreUtils/tests/testthat/test-logging.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/DESCRIPTION | 11 - MazamaCoreUtils-0.3.1/MazamaCoreUtils/MD5 | 50 ++++-- MazamaCoreUtils-0.3.1/MazamaCoreUtils/NAMESPACE | 5 MazamaCoreUtils-0.3.1/MazamaCoreUtils/NEWS.md | 55 ++++++- MazamaCoreUtils-0.3.1/MazamaCoreUtils/R/cacheManagement.R | 60 +++---- MazamaCoreUtils-0.3.1/MazamaCoreUtils/R/data.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/R/dateRange.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/R/functionArgument_linting.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/R/initializeLogging.R | 5 MazamaCoreUtils-0.3.1/MazamaCoreUtils/R/parseDatetime.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/R/timeRange.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/R/utils-tidyeval-data.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/README.md | 5 MazamaCoreUtils-0.3.1/MazamaCoreUtils/build/vignette.rds |binary MazamaCoreUtils-0.3.1/MazamaCoreUtils/data |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/inst/doc/date-parsing.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/inst/doc/date-parsing.Rmd |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/inst/doc/date-parsing.html |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/inst/doc/error-handling.html | 10 - MazamaCoreUtils-0.3.1/MazamaCoreUtils/inst/doc/logging.html | 32 ++-- MazamaCoreUtils-0.3.1/MazamaCoreUtils/man/dateRange.Rd | 78 ++++++---- MazamaCoreUtils-0.3.1/MazamaCoreUtils/man/lintFunctionArgs.Rd |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/man/manageCache.Rd | 8 - MazamaCoreUtils-0.3.1/MazamaCoreUtils/man/parseDatetime.Rd |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/man/tidyeval-data.Rd |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/man/timeRange.Rd |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/man/timezoneLintRules.Rd |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/tests/testthat/test-cacheManagement.R | 70 +++++--- MazamaCoreUtils-0.3.1/MazamaCoreUtils/tests/testthat/test-dateRange.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/tests/testthat/test-errorHandling.R | 33 +--- MazamaCoreUtils-0.3.1/MazamaCoreUtils/tests/testthat/test-initializeLogging.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/tests/testthat/test-parseDatetime.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/tests/testthat/test-pylogger.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/tests/testthat/test-timeRange.R |only MazamaCoreUtils-0.3.1/MazamaCoreUtils/vignettes/date-parsing.Rmd |only 38 files changed, 267 insertions(+), 155 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.4.1 dated 2019-07-01 and 1.4.2 dated 2019-08-20
DESCRIPTION | 12 ++-- MD5 | 26 +++++----- NAMESPACE | 1 NEWS.md | 5 ++ R/KFME_grid.R |only R/geocode.R | 1 R/sysdata.rda |binary README.md | 13 +++++ build/vignette.rds |binary inst/doc/vignette.R | 47 ++++++++++++++----- inst/doc/vignette.Rmd | 67 +++++++++++++++++++++------ inst/doc/vignette.html | 78 ++++++++++++++++++++++++-------- man/KFME_grid.Rd |only tests/testthat/test-1-data-structures.R | 46 ++++++++++++++++++ vignettes/vignette.Rmd | 67 +++++++++++++++++++++------ 15 files changed, 287 insertions(+), 76 deletions(-)
Title: Package for Reading Binary Files
Description: Functions and analytics for GENEA-compatible accelerometer data
into R objects. See topic 'GENEAread' for an introduction to the package.
Author: Zhou Fang [aut],
Joss Langford [aut],
Charles Sweetland [aut, cre]
Maintainer: Charles Sweetland <charles@sweetland-solutions.co.uk>
Diff between GENEAread versions 2.0.6 dated 2018-11-16 and 2.0.7 dated 2019-08-20
GENEAread-2.0.6/GENEAread/man/Convert.time.Rd |only GENEAread-2.0.6/GENEAread/man/Recalibrate.Rd |only GENEAread-2.0.7/GENEAread/DESCRIPTION | 10 ++--- GENEAread-2.0.7/GENEAread/MD5 | 22 ++++++------ GENEAread-2.0.7/GENEAread/NAMESPACE | 2 - GENEAread-2.0.7/GENEAread/R/AccData.r | 2 - GENEAread-2.0.7/GENEAread/R/GENEActiv.calibrate.r | 20 +++++------ GENEAread-2.0.7/GENEAread/R/Recalibrate.R | 39 +++++++++++++--------- GENEAread-2.0.7/GENEAread/R/convert.time.R | 4 +- GENEAread-2.0.7/GENEAread/R/header.info.R | 29 ++++++++++++---- GENEAread-2.0.7/GENEAread/R/read.bin.R | 6 +-- GENEAread-2.0.7/GENEAread/man/AccData.Rd | 2 - GENEAread-2.0.7/GENEAread/man/convert.time.Rd |only GENEAread-2.0.7/GENEAread/man/recalibrate.Rd |only 14 files changed, 79 insertions(+), 57 deletions(-)
Title: Black Box Optimization and Exploration of Parameter Space
Description: Performs prediction of a response function from simulated response values, allowing black-box optimization of functions estimated with some error. Includes a simple user interface for such applications, as well as more specialized functions designed to be called by the Migraine software (Rousset and Leblois, 2012 <doi:10.1093/molbev/MSR262>; Leblois et al., 2014 <doi:10.1093/molbev/msu212>; and see URL). The latter functions are used for prediction of likelihood surfaces and implied likelihood ratio confidence intervals, and for exploration of predictor space of the surface. Prediction of the response is based on ordinary Kriging (with residual error) of the input. Estimation of smoothing parameters is performed by generalized cross-validation.
Author: François Rousset [aut, cre, cph]
(<https://orcid.org/0000-0003-4670-0371>),
Raphaël Leblois [ctb] (<https://orcid.org/0000-0002-3051-4497>)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between blackbox versions 1.1.25 dated 2018-06-08 and 1.1.27 dated 2019-08-20
DESCRIPTION | 19 - MD5 | 22 - R/blackbox.R | 4 R/volTriangulation.R | 19 - inst/NEWS.Rd | 10 tests/test-all.R | 2 tests/tests_private/IVCP/nextpoints_1.txt | 176 +++++----- tests/tests_private/IVCP/output_1.txt | 8 tests/tests_private/IVCP/results_1.txt | 4 tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/nextpoints_1.txt | 68 +-- tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/output_1.txt | 2 tests/tests_private/Test_OnePop_ISM+SMM_ISstrict_Genepop+NexusFiles/results_1.txt | 4 12 files changed, 165 insertions(+), 173 deletions(-)
Title: Estimation of Overlapping in Empirical Distributions
Description: Functions for estimating the overlapping area of two or more kernel density estimations from empirical data.
Author: Massimiliano Pastore
Maintainer: Massimiliano Pastore <massimiliano.pastore@unipd.it>
Diff between overlapping versions 1.5.3 dated 2019-05-28 and 1.5.4 dated 2019-08-20
DESCRIPTION | 8 +-- MD5 | 10 ++-- NEWS | 5 ++ R/boot.overlap.R | 16 +++++- inst/CITATION | 16 ++++++ man/boot.overlap.Rd | 130 ++++++++++++++++++++++++++-------------------------- 6 files changed, 109 insertions(+), 76 deletions(-)
Title: Inferring Causal Network from Mixed Observational Data Using a
Directed Acyclic Graph
Description: Learning a mixed directed acyclic graph based on both continuous and categorical data.
Author: Wujuan Zhong, Li Dong, Quefeng Li, Xiaojing Zheng
Maintainer: Wujuan Zhong <zhongwujuan@gmail.com>
Diff between mDAG versions 1.2 dated 2019-03-13 and 1.2.2 dated 2019-08-20
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/RcppExports.R | 12 ++++++------ R/mDAG.R | 9 +++++---- R/main.R | 9 ++++++--- R/multinom_BIC.R | 2 +- man/mDAG.Rd | 10 ++++++---- src/Greedy_Search.cpp | 49 +++++++++++++++++++++++++++---------------------- src/RcppExports.cpp | 27 +++++++++++++++------------ 9 files changed, 79 insertions(+), 65 deletions(-)
Title: A Fully Featured Logging Framework
Description: A flexible, feature-rich yet light-weight logging
framework based on 'R6' classes. It supports hierarchical loggers,
custom log levels, arbitrary data fields in log events, logging to
plaintext, 'JSON', (rotating) files, memory buffers, and databases, as
well as email and push notifications. For a full list of features with
examples please refer to the package vignette.
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between lgr versions 0.3.1 dated 2019-06-13 and 0.3.2 dated 2019-08-20
lgr-0.3.1/lgr/inst/benchmarks/benchmarks.html |only lgr-0.3.2/lgr/DESCRIPTION | 10 - lgr-0.3.2/lgr/MD5 | 54 ++++---- lgr-0.3.2/lgr/NAMESPACE | 1 lgr-0.3.2/lgr/NEWS.md | 6 lgr-0.3.2/lgr/R/Appender.R | 148 ++++++++++++++++++++++ lgr-0.3.2/lgr/R/basic_config.R | 2 lgr-0.3.2/lgr/R/log_levels.R | 2 lgr-0.3.2/lgr/build/vignette.rds |binary lgr-0.3.2/lgr/inst/WORDLIST | 4 lgr-0.3.2/lgr/inst/doc/lgr.R | 6 lgr-0.3.2/lgr/inst/doc/lgr.Rmd | 10 + lgr-0.3.2/lgr/inst/doc/lgr.html | 168 +++++++++++++------------- lgr-0.3.2/lgr/man/Appender.Rd | 2 lgr-0.3.2/lgr/man/AppenderBuffer.Rd | 1 lgr-0.3.2/lgr/man/AppenderConsole.Rd | 1 lgr-0.3.2/lgr/man/AppenderDbi.Rd | 1 lgr-0.3.2/lgr/man/AppenderFile.Rd | 1 lgr-0.3.2/lgr/man/AppenderFileRotating.Rd | 1 lgr-0.3.2/lgr/man/AppenderGmail.Rd | 1 lgr-0.3.2/lgr/man/AppenderJson.Rd | 1 lgr-0.3.2/lgr/man/AppenderPushbullet.Rd | 1 lgr-0.3.2/lgr/man/AppenderRjdbc.Rd | 1 lgr-0.3.2/lgr/man/AppenderSendmail.Rd | 5 lgr-0.3.2/lgr/man/AppenderSyslog.Rd |only lgr-0.3.2/lgr/man/AppenderTable.Rd | 3 lgr-0.3.2/lgr/man/basic_config.Rd | 2 lgr-0.3.2/lgr/tests/testthat/test_Appender.R | 36 +++++ lgr-0.3.2/lgr/vignettes/lgr.Rmd | 10 + 29 files changed, 347 insertions(+), 131 deletions(-)
More information about implicitMeasures at CRAN
Permanent link
Title: Analyse Audio Recordings and Automatically Extract Animal
Vocalizations
Description: Contains all the necessary tools to process audio recordings of
various formats (e.g., WAV, WAC, MP3, ZC), filter noisy files,
display audio signals, detect and extract automatically acoustic
features for further analysis such as classification.
Author: Jean Marchal [aut, cre],
Francois Fabianek [aut],
Christopher Scott [aut],
Chris Corben [ctb, cph] (Read ZC files, original C code),
David Riggs [ctb, cph] (Read GUANO metadata, original R code),
Peter Wilson [ctb, cph] (Read ZC files, original R code),
Wildlife Acoustics, inc. [ctb, cph] (Read WAC files, original C code),
WavX, inc. [cph]
Maintainer: Jean Marchal <jean.marchal@wavx.ca>
Diff between bioacoustics versions 0.2.0.1 dated 2019-06-09 and 0.2.1 dated 2019-08-20
bioacoustics-0.2.0.1/bioacoustics/R/metadata_zc.R |only bioacoustics-0.2.0.1/bioacoustics/man/metadata_zc.Rd |only bioacoustics-0.2.1/bioacoustics/DESCRIPTION | 6 bioacoustics-0.2.1/bioacoustics/MD5 | 102 - bioacoustics-0.2.1/bioacoustics/NAMESPACE | 88 bioacoustics-0.2.1/bioacoustics/NEWS.md | 126 - bioacoustics-0.2.1/bioacoustics/R/BatBioacoustics.R | 694 +++---- bioacoustics-0.2.1/bioacoustics/R/BatClassify.R | 460 ++-- bioacoustics-0.2.1/bioacoustics/R/RcppExports.R | 46 bioacoustics-0.2.1/bioacoustics/R/bioacoustics.R | 4 bioacoustics-0.2.1/bioacoustics/R/metadata.R | 140 - bioacoustics-0.2.1/bioacoustics/R/myotis-data.R | 28 bioacoustics-0.2.1/bioacoustics/R/read_audio.R | 544 ++--- bioacoustics-0.2.1/bioacoustics/R/zc-data.R | 26 bioacoustics-0.2.1/bioacoustics/build/vignette.rds |binary bioacoustics-0.2.1/bioacoustics/configure | 32 bioacoustics-0.2.1/bioacoustics/configure.ac | 2 bioacoustics-0.2.1/bioacoustics/data/myotis.rda |binary bioacoustics-0.2.1/bioacoustics/data/zc.rda |binary bioacoustics-0.2.1/bioacoustics/inst/doc/introduction.Rmd | 678 +++---- bioacoustics-0.2.1/bioacoustics/inst/doc/introduction.html | 4 bioacoustics-0.2.1/bioacoustics/inst/doc/tutorial.R | 95 - bioacoustics-0.2.1/bioacoustics/inst/doc/tutorial.Rmd | 1106 ++++++------ bioacoustics-0.2.1/bioacoustics/inst/doc/tutorial.html | 106 - bioacoustics-0.2.1/bioacoustics/man/bioacoustics-package.Rd | 102 - bioacoustics-0.2.1/bioacoustics/man/blob_detection.Rd | 190 +- bioacoustics-0.2.1/bioacoustics/man/dot-parse.timestamp.Rd | 30 bioacoustics-0.2.1/bioacoustics/man/file_checks.Rd | 30 bioacoustics-0.2.1/bioacoustics/man/file_type_guess.Rd | 30 bioacoustics-0.2.1/bioacoustics/man/fspec.Rd | 100 - bioacoustics-0.2.1/bioacoustics/man/guano_md.Rd | 34 bioacoustics-0.2.1/bioacoustics/man/metadata.Rd | 71 bioacoustics-0.2.1/bioacoustics/man/mp3_to_wav.Rd | 38 bioacoustics-0.2.1/bioacoustics/man/myotis.Rd | 54 bioacoustics-0.2.1/bioacoustics/man/plot_zc.Rd | 88 bioacoustics-0.2.1/bioacoustics/man/read_audio.Rd | 66 bioacoustics-0.2.1/bioacoustics/man/read_mp3.Rd | 58 bioacoustics-0.2.1/bioacoustics/man/read_wac.Rd | 62 bioacoustics-0.2.1/bioacoustics/man/read_wav.Rd | 62 bioacoustics-0.2.1/bioacoustics/man/read_zc.Rd | 46 bioacoustics-0.2.1/bioacoustics/man/resample.Rd | 50 bioacoustics-0.2.1/bioacoustics/man/rotate90.Rd | 24 bioacoustics-0.2.1/bioacoustics/man/spectro.Rd | 96 - bioacoustics-0.2.1/bioacoustics/man/threshold_detection.Rd | 238 +- bioacoustics-0.2.1/bioacoustics/man/to_dB.Rd | 34 bioacoustics-0.2.1/bioacoustics/man/write_zc.Rd | 44 bioacoustics-0.2.1/bioacoustics/src/Makevars.in | 1 bioacoustics-0.2.1/bioacoustics/src/Makevars.win | 1 bioacoustics-0.2.1/bioacoustics/src/bb_extract.cpp | 2 bioacoustics-0.2.1/bioacoustics/src/bb_tools.h | 2 bioacoustics-0.2.1/bioacoustics/src/read_wac.cpp | 4 bioacoustics-0.2.1/bioacoustics/vignettes/introduction.Rmd | 678 +++---- bioacoustics-0.2.1/bioacoustics/vignettes/tutorial.Rmd | 1106 ++++++------ 53 files changed, 3856 insertions(+), 3772 deletions(-)
Title: Sample Size Calculation for RNA-Seq Experimental Design
Description: We propose a procedure for sample size calculation while
controlling false discovery rate for RNA-seq experimental design. Our
procedure depends on the Voom method proposed for RNA-seq data analysis
by Law et al. (2014) <DOI:10.1186/gb-2014-15-2-r29> and the sample size
calculation method proposed for microarray experiments by Liu and Hwang
(2007) <DOI:10.1093/bioinformatics/btl664>. We develop a set of functions
that calculates appropriate sample sizes for two-sample t-test for RNA-seq
experiments with fixed or varied set of parameters. The outputs also contain a
plot of power versus sample size, a table of power at different sample sizes,
and a table of critical test values at different sample sizes.
To install this package, please use
'source("http://bioconductor.org/biocLite.R"); biocLite("ssizeRNA")'.
For R version 3.5 or greater, please use
'if(!requireNamespace("BiocManager", quietly = TRUE)){install.packages("BiocManager")}; BiocManager::install("ssizeRNA")'.
Author: Ran Bi [aut, cre],
Peng Liu [aut],
Tim Triche [ctb]
Maintainer: Ran Bi <biranpier@gmail.com>
Diff between ssizeRNA versions 1.3.1 dated 2019-02-19 and 1.3.2 dated 2019-08-20
DESCRIPTION | 14 ++++++++------ MD5 | 18 +++++++++--------- build/vignette.rds |binary inst/NEWS.txt | 5 +++++ inst/doc/ssizeRNA.pdf |binary man/check.power.Rd | 9 ++++----- man/sim.counts.Rd | 1 - man/ssize.twoSampVaryDelta.Rd | 15 +++++++-------- man/ssizeRNA_single.Rd | 9 ++++----- man/ssizeRNA_vary.Rd | 9 ++++----- 10 files changed, 41 insertions(+), 39 deletions(-)
Title: Computing Comorbidity Scores
Description: Computing comorbidity scores such as the weighted Charlson score
(Charlson, 1987 <doi:10.1016/0021-9681(87)90171-8>) and the Elixhauser
comorbidity score (Elixhauser, 1998 <doi:10.1097/00005650-199801000-00004>)
using ICD-9-CM or ICD-10 codes (Quan, 2005 <doi:10.1097/01.mlr.0000182534.19832.83>).
Author: Alessandro Gasparini [aut, cre]
(<https://orcid.org/0000-0002-8319-7624>),
Hojjat Salmasian [ctb] (ICD-9-CM scores),
Jonathan Williman [ctb] (<https://orcid.org/0000-0001-5080-4435>)
Maintainer: Alessandro Gasparini <ag475@leicester.ac.uk>
Diff between comorbidity versions 0.4.1 dated 2019-06-27 and 0.5.0 dated 2019-08-20
comorbidity-0.4.1/comorbidity/R/detect.R |only comorbidity-0.4.1/comorbidity/R/scores.R |only comorbidity-0.5.0/comorbidity/DESCRIPTION | 20 - comorbidity-0.5.0/comorbidity/MD5 | 32 - comorbidity-0.5.0/comorbidity/NAMESPACE | 2 comorbidity-0.5.0/comorbidity/NEWS.md | 8 comorbidity-0.5.0/comorbidity/R/comorbidity-package.R | 4 comorbidity-0.5.0/comorbidity/R/comorbidity.R | 42 +- comorbidity-0.5.0/comorbidity/R/data.R | 2 comorbidity-0.5.0/comorbidity/README.md | 2 comorbidity-0.5.0/comorbidity/build/partial.rdb |binary comorbidity-0.5.0/comorbidity/build/vignette.rds |binary comorbidity-0.5.0/comorbidity/inst/doc/comorbidityscores.Rmd | 2 comorbidity-0.5.0/comorbidity/inst/doc/comorbidityscores.html | 194 +++++----- comorbidity-0.5.0/comorbidity/man/australia10.Rd | 2 comorbidity-0.5.0/comorbidity/man/comorbidity.Rd | 8 comorbidity-0.5.0/comorbidity/tests/testthat/test-comorbidity.R | 54 -- comorbidity-0.5.0/comorbidity/vignettes/comorbidityscores.Rmd | 2 18 files changed, 175 insertions(+), 199 deletions(-)
Title: Create Tessellated Hexagon Maps
Description: Create a hexagon tilegram from spatial polygons. Each polygon is
represented by a hexagon tile, placed as close to it's original centroid
as possible, with a focus on maintaining spatial relationship to a focal
point. Developed to aid visualisation and analysis of spatial distributions
across Australia, which can be challenging due to the concentration of the
population on the coast and wide open interior.
Author: Stephanie Kobakian [aut, cre],
Dianne Cook [aut, ths]
Maintainer: Stephanie Kobakian <stephanie.kobakian@gmail.com>
Diff between sugarbag versions 0.1.0 dated 2019-06-14 and 0.1.1 dated 2019-08-20
DESCRIPTION | 13 +-- MD5 | 49 +++++++----- NAMESPACE | 1 NEWS.md |only R/allocate.R | 44 +++++------ R/closest_focal_point.R | 14 ++- R/create_centroids.R | 4 - R/create_hexmap.R | 6 - R/data.R | 28 +++++++ R/filter_grid_points.R | 24 +++--- R/fortify_hexagon.R | 5 - R/fortify_sfc.R | 2 R/global.R | 4 - R/utils.R |only README.md | 121 +++++++++++++++++++++++-------- build/vignette.rds |binary data/fp19.rda |only inst/doc/abs-data.html | 8 +- inst/doc/tasmania.R | 7 + inst/doc/tasmania.Rmd | 9 +- inst/doc/tasmania.html | 99 +++++++++++++------------ man/allocate.Rd | 2 man/create_hexmap.Rd | 2 man/figures/README-animated-1.gif |only man/figures/README-plot_facet-1.png |binary man/figures/README-unnamed-chunk-2-1.gif |only man/figures/README-unnamed-chunk-7-1.gif |only man/fp19.Rd |only vignettes/tasmania.Rmd | 9 +- 29 files changed, 288 insertions(+), 163 deletions(-)
Title: Identify Sudden Gains in Longitudinal Data
Description: Identify sudden gains based on the three criteria outlined by Tang and DeRubeis (1999) <doi:10.1037/0022-006X.67.6.894> to a selection of repeated measures. Sudden losses, defined as the opposite of sudden gains can also be identified. Two different datasets can be created, one including all sudden gains/losses and one including one selected sudden gain/loss for each case. It can extract scores around sudden gains/losses. It can plot the average change around sudden gains/losses and trajectories of individual cases.
Author: Milan Wiedemann [aut, cre] (<https://orcid.org/0000-0003-1991-282X>),
Graham M Thew [ctb] (<https://orcid.org/0000-0003-2851-1315>),
Richard Stott [ctb] (<https://orcid.org/0000-0003-2533-5504>),
Anke Ehlers [ctb, ths] (<https://orcid.org/0000-0002-8742-0192>)
Maintainer: Milan Wiedemann <milan.wiedemann@gmail.com>
Diff between suddengains versions 0.2.1 dated 2019-05-21 and 0.3.0 dated 2019-08-20
suddengains-0.2.1/suddengains/man/dotdotequal.Rd |only suddengains-0.3.0/suddengains/DESCRIPTION | 8 suddengains-0.3.0/suddengains/MD5 | 25 suddengains-0.3.0/suddengains/NAMESPACE | 2 suddengains-0.3.0/suddengains/NEWS.md | 4 suddengains-0.3.0/suddengains/R/check_interval.R |only suddengains-0.3.0/suddengains/R/magrittrpipeoperator.R | 11 suddengains-0.3.0/suddengains/R/write_bysg.R | 1 suddengains-0.3.0/suddengains/README.md | 41 suddengains-0.3.0/suddengains/build/vignette.rds |binary suddengains-0.3.0/suddengains/inst/doc/suddengains-tutorial.R | 41 suddengains-0.3.0/suddengains/inst/doc/suddengains-tutorial.Rmd | 47 suddengains-0.3.0/suddengains/inst/doc/suddengains-tutorial.html | 789 +++++----- suddengains-0.3.0/suddengains/man/check_interval.Rd |only suddengains-0.3.0/suddengains/vignettes/suddengains-tutorial.Rmd | 47 15 files changed, 633 insertions(+), 383 deletions(-)
Title: Overlays on Static Maps
Description: Serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Author: Markus Loecher
Maintainer: Markus Loecher <markus.loecher@gmail.com>
Diff between RgoogleMaps versions 1.4.3 dated 2018-11-07 and 1.4.4 dated 2019-08-20
RgoogleMaps-1.4.3/RgoogleMaps/README |only RgoogleMaps-1.4.3/RgoogleMaps/inst/doc |only RgoogleMaps-1.4.4/RgoogleMaps/DESCRIPTION | 8 RgoogleMaps-1.4.4/RgoogleMaps/MD5 | 48 - RgoogleMaps-1.4.4/RgoogleMaps/R/GetMap.R | 238 ++++----- RgoogleMaps-1.4.4/RgoogleMaps/R/GetMap.bbox.R | 4 RgoogleMaps-1.4.4/RgoogleMaps/R/GetMapTiles.R | 29 - RgoogleMaps-1.4.4/RgoogleMaps/R/NumTiles.R |only RgoogleMaps-1.4.4/RgoogleMaps/R/genStaticMap.R |only RgoogleMaps-1.4.4/RgoogleMaps/R/qbbox.R | 7 RgoogleMaps-1.4.4/RgoogleMaps/man/ColorMap.Rd | 9 RgoogleMaps-1.4.4/RgoogleMaps/man/DF2SpatialPointsDataFrame.Rd | 3 RgoogleMaps-1.4.4/RgoogleMaps/man/GetBingMap.Rd | 12 RgoogleMaps-1.4.4/RgoogleMaps/man/GetMap.Rd | 24 RgoogleMaps-1.4.4/RgoogleMaps/man/GetMap.bbox.Rd | 10 RgoogleMaps-1.4.4/RgoogleMaps/man/GetMapTiles.Rd | 264 ++++++---- RgoogleMaps-1.4.4/RgoogleMaps/man/GetOsmMap.Rd | 6 RgoogleMaps-1.4.4/RgoogleMaps/man/MapBackground.Rd | 7 RgoogleMaps-1.4.4/RgoogleMaps/man/NumTiles.Rd |only RgoogleMaps-1.4.4/RgoogleMaps/man/PlotArrowsOnStaticMap.Rd | 6 RgoogleMaps-1.4.4/RgoogleMaps/man/PlotOnMapTiles.Rd | 5 RgoogleMaps-1.4.4/RgoogleMaps/man/PlotOnStaticMap.Rd | 176 ++---- RgoogleMaps-1.4.4/RgoogleMaps/man/PlotPolysOnStaticMap.Rd | 5 RgoogleMaps-1.4.4/RgoogleMaps/man/TextOnStaticMap.Rd | 5 RgoogleMaps-1.4.4/RgoogleMaps/man/bubbleMap.Rd | 8 RgoogleMaps-1.4.4/RgoogleMaps/man/genStaticMap.Rd |only RgoogleMaps-1.4.4/RgoogleMaps/man/plotmap.Rd | 10 RgoogleMaps-1.4.4/RgoogleMaps/man/qbbox.Rd | 13 28 files changed, 495 insertions(+), 402 deletions(-)
Title: Tools for Highfrequency Data Analysis
Description: Provide functionality to manage, clean and match highfrequency
trades and quotes data, calculate various liquidity measures, estimate and
forecast volatility, detect price jumps and investigate microstructure noise and intraday
periodicity.
Author: Kris Boudt [aut, cre],
Jonathan Cornelissen [aut],
Scott Payseur [aut],
Giang Nguyen [ctb],
Onno Kleen [ctb] (<https://orcid.org/0000-0003-4731-4640>)
Maintainer: Kris Boudt
<Kris.Boudt@econ.kuleuven.be>
Diff between highfrequency versions 0.5.3 dated 2018-03-03 and 0.6.0 dated 2019-08-20
highfrequency-0.5.3/highfrequency/R/AJjumptest.R |only highfrequency-0.5.3/highfrequency/R/BNSjumptest.R |only highfrequency-0.5.3/highfrequency/R/JOjumptest.R |only highfrequency-0.5.3/highfrequency/R/heavyModelC.R |only highfrequency-0.5.3/highfrequency/R/highfrequencyGSOC.R |only highfrequency-0.5.3/highfrequency/R/quantmod_patch.R |only highfrequency-0.5.3/highfrequency/R/realized.R |only highfrequency-0.5.3/highfrequency/R/spotvol.r |only highfrequency-0.5.3/highfrequency/data/lltc.xts.rda |only highfrequency-0.5.3/highfrequency/data/sbux.xts.rda |only highfrequency-0.5.3/highfrequency/inst/doc/highfrequency.pdf |only highfrequency-0.5.3/highfrequency/man/ExchangeHoursOnly.Rd |only highfrequency-0.5.3/highfrequency/man/RKurt.Rd |only highfrequency-0.5.3/highfrequency/man/RQPVar.Rd |only highfrequency-0.5.3/highfrequency/man/RQuar.Rd |only highfrequency-0.5.3/highfrequency/man/RSkew.Rd |only highfrequency-0.5.3/highfrequency/man/RTPVar.Rd |only highfrequency-0.5.3/highfrequency/man/RsV.Rd |only highfrequency-0.5.3/highfrequency/man/TAQload.Rd |only highfrequency-0.5.3/highfrequency/man/convert.Rd |only highfrequency-0.5.3/highfrequency/man/has.Qty.Rd |only highfrequency-0.5.3/highfrequency/man/heavyModelC.Rd |only highfrequency-0.5.3/highfrequency/man/lltc.xts.Rd |only highfrequency-0.5.3/highfrequency/man/mergequotessametimestamp.Rd |only highfrequency-0.5.3/highfrequency/man/nozeroprices.Rd |only highfrequency-0.5.3/highfrequency/man/nozeroquotes.Rd |only highfrequency-0.5.3/highfrequency/man/previoustick.Rd |only highfrequency-0.5.3/highfrequency/man/quotescleanup.Rd |only highfrequency-0.5.3/highfrequency/man/rAccumulation.Rd |only highfrequency-0.5.3/highfrequency/man/rCumSum.Rd |only highfrequency-0.5.3/highfrequency/man/rKernel.available.Rd |only highfrequency-0.5.3/highfrequency/man/rMarginal.Rd |only highfrequency-0.5.3/highfrequency/man/rRTSCov.rd |only highfrequency-0.5.3/highfrequency/man/rScatterReturns.Rd |only highfrequency-0.5.3/highfrequency/man/rTSCov.rd |only highfrequency-0.5.3/highfrequency/man/rZero.Rd |only highfrequency-0.5.3/highfrequency/man/rmlargespread.Rd |only highfrequency-0.5.3/highfrequency/man/rmoutliers.Rd |only highfrequency-0.5.3/highfrequency/man/rmtradeoutliers.Rd |only highfrequency-0.5.3/highfrequency/man/sbux.xts.Rd |only highfrequency-0.5.3/highfrequency/man/selectexchange.Rd |only highfrequency-0.5.3/highfrequency/man/tqLiquidity.Rd |only highfrequency-0.5.3/highfrequency/man/tradesCleanupFinal.Rd |only highfrequency-0.5.3/highfrequency/man/tradescleanup.Rd |only highfrequency-0.5.3/highfrequency/src/highfrequency.c |only highfrequency-0.5.3/highfrequency/src/highfrequency.h |only highfrequency-0.6.0/highfrequency/DESCRIPTION | 35 highfrequency-0.6.0/highfrequency/MD5 | 228 +-- highfrequency-0.6.0/highfrequency/NAMESPACE | 238 ++- highfrequency-0.6.0/highfrequency/R/RcppExports.R |only highfrequency-0.6.0/highfrequency/R/data.R |only highfrequency-0.6.0/highfrequency/R/data_handling.R |only highfrequency-0.6.0/highfrequency/R/har_model.R |only highfrequency-0.6.0/highfrequency/R/heavy_model.R |only highfrequency-0.6.0/highfrequency/R/highfrequency.R |only highfrequency-0.6.0/highfrequency/R/internal.R |only highfrequency-0.6.0/highfrequency/R/internal_data_handling.R |only highfrequency-0.6.0/highfrequency/R/internal_jump_tests.R |only highfrequency-0.6.0/highfrequency/R/internal_preavering_estimators.R |only highfrequency-0.6.0/highfrequency/R/internal_realized_measures.R |only highfrequency-0.6.0/highfrequency/R/internal_spot_vol_and_drift.R |only highfrequency-0.6.0/highfrequency/R/jump_tests.R |only highfrequency-0.6.0/highfrequency/R/liquidity_measures.R |only highfrequency-0.6.0/highfrequency/R/rcpp_dynlib_call.R |only highfrequency-0.6.0/highfrequency/R/realized_measures.R |only highfrequency-0.6.0/highfrequency/R/realized_measures_inference.R |only highfrequency-0.6.0/highfrequency/R/spot_vol_and_drift.R |only highfrequency-0.6.0/highfrequency/build |only highfrequency-0.6.0/highfrequency/data/SP500RM.rda |only highfrequency-0.6.0/highfrequency/data/datalist |only highfrequency-0.6.0/highfrequency/data/lltc.RData |only highfrequency-0.6.0/highfrequency/data/realized_library.rda |binary highfrequency-0.6.0/highfrequency/data/sample_qdata_microseconds.rda |only highfrequency-0.6.0/highfrequency/data/sample_qdataraw.rda |binary highfrequency-0.6.0/highfrequency/data/sample_qdataraw_microseconds.rda |only highfrequency-0.6.0/highfrequency/data/sample_real5minprices.rda |binary highfrequency-0.6.0/highfrequency/data/sample_tdata_microseconds.rda |only highfrequency-0.6.0/highfrequency/data/sample_tdataraw.rda |binary highfrequency-0.6.0/highfrequency/data/sample_tdataraw_microseconds.rda |only highfrequency-0.6.0/highfrequency/data/sbux.RData |only highfrequency-0.6.0/highfrequency/inst/doc/data_handing.R |only highfrequency-0.6.0/highfrequency/inst/doc/data_handing.Rmd |only highfrequency-0.6.0/highfrequency/inst/doc/data_handing.html |only highfrequency-0.6.0/highfrequency/man/AJjumptest.Rd | 215 +- highfrequency-0.6.0/highfrequency/man/BNSjumptest.Rd | 169 +- highfrequency-0.6.0/highfrequency/man/JOjumptest.Rd | 166 +- highfrequency-0.6.0/highfrequency/man/MRC.Rd | 159 +- highfrequency-0.6.0/highfrequency/man/RTQ.Rd |only highfrequency-0.6.0/highfrequency/man/RV.Rd |only highfrequency-0.6.0/highfrequency/man/SP500RM.Rd |only highfrequency-0.6.0/highfrequency/man/TSCov_bi.Rd |only highfrequency-0.6.0/highfrequency/man/aggregatePrice.Rd | 110 - highfrequency-0.6.0/highfrequency/man/aggregateQuotes.Rd | 108 - highfrequency-0.6.0/highfrequency/man/aggregateTrades.Rd | 113 - highfrequency-0.6.0/highfrequency/man/aggregatets.Rd | 140 - highfrequency-0.6.0/highfrequency/man/autoSelectExchangeQuotes.Rd | 90 - highfrequency-0.6.0/highfrequency/man/autoSelectExchangeTrades.Rd | 90 - highfrequency-0.6.0/highfrequency/man/exchangeHoursOnly.Rd |only highfrequency-0.6.0/highfrequency/man/getLiquidityMeasures.Rd |only highfrequency-0.6.0/highfrequency/man/getPrice.Rd | 51 highfrequency-0.6.0/highfrequency/man/getTradeDirection.Rd | 79 - highfrequency-0.6.0/highfrequency/man/harModel.Rd | 233 ++- highfrequency-0.6.0/highfrequency/man/hasQty.Rd |only highfrequency-0.6.0/highfrequency/man/heavyModel.Rd | 173 +- highfrequency-0.6.0/highfrequency/man/highfrequency-package.Rd | 66 highfrequency-0.6.0/highfrequency/man/ivInference.Rd | 160 +- highfrequency-0.6.0/highfrequency/man/listAvailableKernels.Rd |only highfrequency-0.6.0/highfrequency/man/lltc.Rd |only highfrequency-0.6.0/highfrequency/man/makePsd.Rd | 90 - highfrequency-0.6.0/highfrequency/man/makeReturns.Rd | 60 highfrequency-0.6.0/highfrequency/man/matchTradesQuotes.Rd | 78 - highfrequency-0.6.0/highfrequency/man/medRQ.Rd | 92 - highfrequency-0.6.0/highfrequency/man/medRV.Rd | 125 - highfrequency-0.6.0/highfrequency/man/mergeQuotesSameTimestamp.Rd |only highfrequency-0.6.0/highfrequency/man/mergeTradesSameTimestamp.Rd | 69 highfrequency-0.6.0/highfrequency/man/minRQ.Rd | 91 - highfrequency-0.6.0/highfrequency/man/minRV.Rd | 94 - highfrequency-0.6.0/highfrequency/man/mukp.Rd |only highfrequency-0.6.0/highfrequency/man/noZeroPrices.Rd |only highfrequency-0.6.0/highfrequency/man/noZeroQuotes.Rd |only highfrequency-0.6.0/highfrequency/man/quotesCleanup.Rd |only highfrequency-0.6.0/highfrequency/man/rAVGCov.Rd | 104 - highfrequency-0.6.0/highfrequency/man/rBPCov.Rd | 137 - highfrequency-0.6.0/highfrequency/man/rBeta.Rd | 135 - highfrequency-0.6.0/highfrequency/man/rCov.Rd | 110 - highfrequency-0.6.0/highfrequency/man/rHYCov.Rd | 79 - highfrequency-0.6.0/highfrequency/man/rKernelCov.Rd | 127 - highfrequency-0.6.0/highfrequency/man/rKurt.Rd |only highfrequency-0.6.0/highfrequency/man/rMPV.Rd | 121 - highfrequency-0.6.0/highfrequency/man/rOWCov.Rd | 186 +- highfrequency-0.6.0/highfrequency/man/rQPVar.Rd |only highfrequency-0.6.0/highfrequency/man/rQuar.Rd |only highfrequency-0.6.0/highfrequency/man/rRTSCov.Rd |only highfrequency-0.6.0/highfrequency/man/rSV.Rd |only highfrequency-0.6.0/highfrequency/man/rSkew.Rd |only highfrequency-0.6.0/highfrequency/man/rTPVar.Rd |only highfrequency-0.6.0/highfrequency/man/rTSCov.Rd |only highfrequency-0.6.0/highfrequency/man/rThresholdCov.Rd | 124 - highfrequency-0.6.0/highfrequency/man/realized_library.Rd | 42 highfrequency-0.6.0/highfrequency/man/refreshTime.Rd | 93 - highfrequency-0.6.0/highfrequency/man/rmLargeSpread.Rd |only highfrequency-0.6.0/highfrequency/man/rmNegativeSpread.Rd | 50 highfrequency-0.6.0/highfrequency/man/rmOutliersQuotes.Rd |only highfrequency-0.6.0/highfrequency/man/rmTradeOutliers.Rd |only highfrequency-0.6.0/highfrequency/man/rmTradeOutliersUsingQuotes.Rd |only highfrequency-0.6.0/highfrequency/man/salesCondition.Rd | 50 highfrequency-0.6.0/highfrequency/man/sample_5minprices.Rd | 55 highfrequency-0.6.0/highfrequency/man/sample_5minprices_jumps.Rd | 64 highfrequency-0.6.0/highfrequency/man/sample_qdata.Rd | 24 highfrequency-0.6.0/highfrequency/man/sample_qdata_microseconds.Rd |only highfrequency-0.6.0/highfrequency/man/sample_qdataraw.Rd | 25 highfrequency-0.6.0/highfrequency/man/sample_qdataraw_microseconds.Rd |only highfrequency-0.6.0/highfrequency/man/sample_real5minprices.Rd | 26 highfrequency-0.6.0/highfrequency/man/sample_returns_5min.Rd | 26 highfrequency-0.6.0/highfrequency/man/sample_tdata.Rd | 26 highfrequency-0.6.0/highfrequency/man/sample_tdata_microseconds.Rd |only highfrequency-0.6.0/highfrequency/man/sample_tdataraw.Rd | 25 highfrequency-0.6.0/highfrequency/man/sample_tdataraw_microseconds.Rd |only highfrequency-0.6.0/highfrequency/man/sbux.Rd |only highfrequency-0.6.0/highfrequency/man/selectExchange.Rd |only highfrequency-0.6.0/highfrequency/man/spotDrift.Rd |only highfrequency-0.6.0/highfrequency/man/spotvol.Rd | 720 ++++------ highfrequency-0.6.0/highfrequency/man/tradesCleanup.Rd |only highfrequency-0.6.0/highfrequency/man/tradesCleanupUsingQuotes.Rd |only highfrequency-0.6.0/highfrequency/src/RcppExports.cpp |only highfrequency-0.6.0/highfrequency/src/har_model.cpp |only highfrequency-0.6.0/highfrequency/src/heavy_model.cpp |only highfrequency-0.6.0/highfrequency/src/realized_measures.cpp |only highfrequency-0.6.0/highfrequency/tests |only highfrequency-0.6.0/highfrequency/vignettes |only 170 files changed, 2875 insertions(+), 2796 deletions(-)
Title: DIF and DDF Detection by Non-Linear Regression Models
Description: Detection of differential item functioning (DIF) among dichotomously scored items and differential distractor functioning (DDF) among unscored items with non-linear regression procedures based on generalized logistic regression models (Drabinova and Martinkova, 2017, doi:10.1111/jedm.12158).
Author: Adela Hladka [aut, cre],
Patricia Martinkova [aut],
Karel Zvara [ctb]
Maintainer: Adela Hladka <hladka@cs.cas.cz>
Diff between difNLR versions 1.2.2 dated 2018-05-06 and 1.3.0 dated 2019-08-20
DESCRIPTION | 28 +- MD5 | 97 ++++--- NAMESPACE | 16 + NEWS | 145 +++++++++++ R/GMAT.R | 4 R/GMAT2.R | 4 R/GMAT2key.R | 4 R/GMAT2test.R | 4 R/GMATkey.R | 4 R/GMATtest.R | 4 R/MLR.R | 270 +++++++++++++++------ R/MSATB.R | 4 R/MSATBkey.R | 4 R/MSATBtest.R | 4 R/NLR.R | 29 +- R/ORD.R |only R/checkInterval.R | 6 R/ddfMLR.R | 483 +++++++++++++++++++++++--------------- R/ddfORD.R |only R/difNLR-package.R | 27 +- R/difNLR.R | 536 ++++++++++++++++++++++++------------------- R/estimNLR.R | 4 R/formulaNLR.R | 4 R/genNLR.R | 143 ++++++----- R/startNLR.R | 6 README.md | 26 +- inst/CITATION | 12 inst/DDF_CLRM_category.png |only inst/DDF_CLRM_cumulative.png |only inst/DIF_NLR.png |only man/GMAT.Rd | 4 man/GMAT2.Rd | 4 man/GMAT2key.Rd | 4 man/GMAT2test.Rd | 4 man/GMATkey.Rd | 4 man/GMATtest.Rd | 4 man/MLR.Rd | 32 +- man/MSATB.Rd | 4 man/MSATBkey.Rd | 4 man/MSATBtest.Rd | 4 man/NLR.Rd | 19 - man/ORD.Rd |only man/checkInterval.Rd | 5 man/ddfMLR.Rd | 95 ++++--- man/ddfORD.Rd |only man/difNLR-package.Rd | 24 + man/difNLR.Rd | 38 +-- man/estimNLR.Rd | 4 man/formulaNLR.Rd | 4 man/genNLR.Rd | 47 ++- man/plot.difNLR.Rd | 12 man/predict.difNLR.Rd | 5 man/startNLR.Rd | 5 53 files changed, 1368 insertions(+), 826 deletions(-)
Title: Statistics Netherlands (CBS) Open Data API Client
Description: The data and meta data from Statistics
Netherlands (<https://www.cbs.nl>) can be browsed and downloaded. The client uses
the open data API of Statistics Netherlands.
Author: Edwin de Jonge [aut, cre],
Sara Houweling [ctb]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between cbsodataR versions 0.3.2 dated 2019-02-21 and 0.3.4 dated 2019-08-20
cbsodataR-0.3.2/cbsodataR/man/download_table.Rd |only cbsodataR-0.3.2/cbsodataR/man/get_data.Rd |only cbsodataR-0.3.2/cbsodataR/man/get_meta.Rd |only cbsodataR-0.3.4/cbsodataR/DESCRIPTION | 15 +- cbsodataR-0.3.4/cbsodataR/MD5 | 89 ++++++------- cbsodataR-0.3.4/cbsodataR/NAMESPACE | 3 cbsodataR-0.3.4/cbsodataR/NEWS.md | 70 ++++++---- cbsodataR-0.3.4/cbsodataR/R/cbs_add_date_column.R | 17 +- cbsodataR-0.3.4/cbsodataR/R/cbs_add_label_columns.R | 24 ++- cbsodataR-0.3.4/cbsodataR/R/cbs_default_selection.R | 4 cbsodataR-0.3.4/cbsodataR/R/cbs_download_data.R | 7 - cbsodataR-0.3.4/cbsodataR/R/cbs_download_meta.R | 6 cbsodataR-0.3.4/cbsodataR/R/cbs_download_table.R | 22 ++- cbsodataR-0.3.4/cbsodataR/R/cbs_extract_table_id.R | 7 - cbsodataR-0.3.4/cbsodataR/R/cbs_get_data.R | 36 +++-- cbsodataR-0.3.4/cbsodataR/R/cbs_get_data_from_link.R | 4 cbsodataR-0.3.4/cbsodataR/R/cbs_get_meta.R | 30 +++- cbsodataR-0.3.4/cbsodataR/R/cbs_get_themes.R | 14 +- cbsodataR-0.3.4/cbsodataR/R/cbs_get_toc.R | 18 +- cbsodataR-0.3.4/cbsodataR/R/cbsopendata.R | 33 ++++ cbsodataR-0.3.4/cbsodataR/R/deeplink.R | 1 cbsodataR-0.3.4/cbsodataR/R/download-data.R | 12 - cbsodataR-0.3.4/cbsodataR/R/download-meta.R | 13 - cbsodataR-0.3.4/cbsodataR/R/download-table.R | 22 --- cbsodataR-0.3.4/cbsodataR/R/filter.R | 2 cbsodataR-0.3.4/cbsodataR/R/get-data.R | 32 ---- cbsodataR-0.3.4/cbsodataR/R/get-meta.R | 18 -- cbsodataR-0.3.4/cbsodataR/R/get-table-list.R | 10 - cbsodataR-0.3.4/cbsodataR/R/get-themes.R | 14 +- cbsodataR-0.3.4/cbsodataR/build/vignette.rds |binary cbsodataR-0.3.4/cbsodataR/inst/doc/cbsodataR.Rmd | 2 cbsodataR-0.3.4/cbsodataR/inst/doc/cbsodataR.html | 27 ++- cbsodataR-0.3.4/cbsodataR/man/cbs_add_date_column.Rd | 25 ++- cbsodataR-0.3.4/cbsodataR/man/cbs_add_label_columns.Rd | 35 ++++- cbsodataR-0.3.4/cbsodataR/man/cbs_download_data.Rd | 15 ++ cbsodataR-0.3.4/cbsodataR/man/cbs_download_meta.Rd | 14 +- cbsodataR-0.3.4/cbsodataR/man/cbs_download_table.Rd | 29 ++-- cbsodataR-0.3.4/cbsodataR/man/cbs_extract_table_id.Rd | 8 + cbsodataR-0.3.4/cbsodataR/man/cbs_get_data.Rd | 34 +++- cbsodataR-0.3.4/cbsodataR/man/cbs_get_data_from_link.Rd | 12 + cbsodataR-0.3.4/cbsodataR/man/cbs_get_meta.Rd | 30 +++- cbsodataR-0.3.4/cbsodataR/man/cbsodataR-package.Rd |only cbsodataR-0.3.4/cbsodataR/man/download_data-deprecated.Rd | 14 +- cbsodataR-0.3.4/cbsodataR/man/download_meta-deprecated.Rd | 14 +- cbsodataR-0.3.4/cbsodataR/man/download_table-deprecated.Rd |only cbsodataR-0.3.4/cbsodataR/man/get_data-deprecated.Rd |only cbsodataR-0.3.4/cbsodataR/man/get_meta-deprecated.Rd |only cbsodataR-0.3.4/cbsodataR/man/get_table_list.Rd | 7 - cbsodataR-0.3.4/cbsodataR/vignettes/cbsodataR.Rmd | 2 49 files changed, 497 insertions(+), 294 deletions(-)
Title: Path Diagrams and Visual Analysis of Various SEM Packages'
Output
Description: Path diagrams and visual analysis of various SEM packages' output.
Author: Sacha Epskamp [aut, cre],
Simon Stuber [ctb],
Jason Nak [ctb],
Myrthe Veenman [ctb],
Terrence D. Jorgensen [ctb] (<https://orcid.org/0000-0001-5111-6773>)
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between semPlot versions 1.1.1 dated 2019-04-05 and 1.1.2 dated 2019-08-20
DESCRIPTION | 14 ++- MD5 | 10 +- NAMESPACE | 2 R/OpenMx.R | 172 ++++++++++++++++++++++++++++++++++++++++++++----- R/semPathsHelperFuns.R | 2 man/regsemplot.Rd | 27 +++---- 6 files changed, 187 insertions(+), 40 deletions(-)
Title: Calculate Indices and Theoretical Physicochemical Properties of
Protein Sequences
Description: Includes functions to calculate several physicochemical properties and indices for amino-acid sequences as well as to read and plot 'XVG' output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio [aut, cre],
Paola Rondon-Villarreal [aut, ths],
Rodrigo Torres [aut, ths],
J. Sebastian Paez [ctb]
Maintainer: Daniel Osorio <dcosorioh@tamu.edu>
Diff between Peptides versions 2.4 dated 2018-06-08 and 2.4.1 dated 2019-08-20
Peptides-2.4.1/Peptides/DESCRIPTION | 12 ++++----- Peptides-2.4.1/Peptides/MD5 | 20 +++++++-------- Peptides-2.4.1/Peptides/NEWS.md | 9 +++++-- Peptides-2.4.1/Peptides/R/aaCheck.R | 2 - Peptides-2.4.1/Peptides/R/readXVG.R | 23 +++++++++--------- Peptides-2.4.1/Peptides/data/AAdata.RData |binary Peptides-2.4.1/Peptides/data/pepdata.RData |binary Peptides-2.4.1/Peptides/man/aacomp.Rd |only Peptides-2.4.1/Peptides/man/aindex.Rd |only Peptides-2.4.1/Peptides/man/instaindex.Rd |only Peptides-2.4.1/Peptides/tests/testthat/test.aacheck.R | 5 +++ Peptides-2.4/Peptides/man/aIndex.Rd |only Peptides-2.4/Peptides/man/aaComp.Rd |only Peptides-2.4/Peptides/man/instaIndex.Rd |only 14 files changed, 41 insertions(+), 30 deletions(-)
Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used,
but may require higher performance that what can be obtained from base R.
Incidentally provides support for 'reverse geocoding', such as matching a point
with its nearest neighbour in another array. Used as a complement to package
'hutils' by sacrificing compilation or installation time for higher running
speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutilscpp versions 0.1.0 dated 2019-02-03 and 0.2.0 dated 2019-08-20
hutilscpp-0.1.0/hutilscpp/man/AnyWhich.Rd |only hutilscpp-0.2.0/hutilscpp/DESCRIPTION | 8 hutilscpp-0.2.0/hutilscpp/MD5 | 100 - hutilscpp-0.2.0/hutilscpp/NAMESPACE | 8 hutilscpp-0.2.0/hutilscpp/NEWS.md |only hutilscpp-0.2.0/hutilscpp/R/RcppExports.R | 150 +- hutilscpp-0.2.0/hutilscpp/R/as_integer_if_safe.R |only hutilscpp-0.2.0/hutilscpp/R/hutilscpp-package.R | 1 hutilscpp-0.2.0/hutilscpp/R/is_constant.R |only hutilscpp-0.2.0/hutilscpp/R/is_sorted.R |only hutilscpp-0.2.0/hutilscpp/R/logical3.R |only hutilscpp-0.2.0/hutilscpp/R/match_nrst_haversine.R | 2 hutilscpp-0.2.0/hutilscpp/R/pmaxC.R | 377 ++--- hutilscpp-0.2.0/hutilscpp/R/pminC.R | 307 ++-- hutilscpp-0.2.0/hutilscpp/R/seqN_by.R |only hutilscpp-0.2.0/hutilscpp/R/sum_isna.R |only hutilscpp-0.2.0/hutilscpp/R/utils.R | 173 +- hutilscpp-0.2.0/hutilscpp/R/which3.R |only hutilscpp-0.2.0/hutilscpp/R/which_first.R | 368 +++-- hutilscpp-0.2.0/hutilscpp/R/which_true_onwards.R | 6 hutilscpp-0.2.0/hutilscpp/man/as_integer_if_safe.Rd |only hutilscpp-0.2.0/hutilscpp/man/is_constant.Rd |only hutilscpp-0.2.0/hutilscpp/man/logical3.Rd |only hutilscpp-0.2.0/hutilscpp/man/match_nrst_haversine.Rd | 2 hutilscpp-0.2.0/hutilscpp/man/pmaxC.Rd | 11 hutilscpp-0.2.0/hutilscpp/man/pminC.Rd | 2 hutilscpp-0.2.0/hutilscpp/man/sum_isna.Rd |only hutilscpp-0.2.0/hutilscpp/man/which3.Rd |only hutilscpp-0.2.0/hutilscpp/src/AnyCharMatch.cpp | 29 hutilscpp-0.2.0/hutilscpp/src/AnyWhich.cpp | 42 hutilscpp-0.2.0/hutilscpp/src/Implies.cpp | 12 hutilscpp-0.2.0/hutilscpp/src/RcppExports.cpp | 481 ++++++ hutilscpp-0.2.0/hutilscpp/src/anyOutside.cpp | 16 hutilscpp-0.2.0/hutilscpp/src/do_cumsum_reset.cpp | 46 hutilscpp-0.2.0/hutilscpp/src/do_even.cpp | 12 hutilscpp-0.2.0/hutilscpp/src/do_range.cpp | 18 hutilscpp-0.2.0/hutilscpp/src/do_which_first.cpp | 20 hutilscpp-0.2.0/hutilscpp/src/haversineDistance.cpp | 47 hutilscpp-0.2.0/hutilscpp/src/is_safe2int.cpp |only hutilscpp-0.2.0/hutilscpp/src/is_sorted.cpp |only hutilscpp-0.2.0/hutilscpp/src/logical3.cpp |only hutilscpp-0.2.0/hutilscpp/src/pmax0.cpp |only hutilscpp-0.2.0/hutilscpp/src/pmaxC.cpp | 29 hutilscpp-0.2.0/hutilscpp/src/pmaxV.cpp | 32 hutilscpp-0.2.0/hutilscpp/src/pminC.cpp | 25 hutilscpp-0.2.0/hutilscpp/src/pminV.cpp | 8 hutilscpp-0.2.0/hutilscpp/src/squish.cpp | 8 hutilscpp-0.2.0/hutilscpp/src/sum_isna.cpp |only hutilscpp-0.2.0/hutilscpp/src/summary3.cpp | 12 hutilscpp-0.2.0/hutilscpp/src/texParse.cpp | 4 hutilscpp-0.2.0/hutilscpp/src/which_true_onwards.cpp | 6 hutilscpp-0.2.0/hutilscpp/tests/testthat/test-AnyCharMatch.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-and3.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-as_integer_if_safe.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-cpp-haversine.R | 724 +++++----- hutilscpp-0.2.0/hutilscpp/tests/testthat/test-do_duplicated_sorted.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-is_constant.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-is_sorted.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-or3.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-pmax0.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-pmax_friends.R | 512 +++---- hutilscpp-0.2.0/hutilscpp/tests/testthat/test-pmin.R | 19 hutilscpp-0.2.0/hutilscpp/tests/testthat/test-seqN_by.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-sum_isna.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-which3.R |only hutilscpp-0.2.0/hutilscpp/tests/testthat/test-which_first.R | 121 + 66 files changed, 2375 insertions(+), 1363 deletions(-)
Title: Additional Layout Algorithms for Network Visualizations
Description: Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.
Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.
Some more specific algorithms allow to emphasize hidden group structures in networks or focus on specific nodes.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david.schoch@manchester.ac.uk>
Diff between graphlayouts versions 0.2.0 dated 2019-07-04 and 0.5.0 dated 2019-08-20
graphlayouts-0.2.0/graphlayouts/R/backbone_function.R |only graphlayouts-0.2.0/graphlayouts/R/manipulate_graph.R |only graphlayouts-0.2.0/graphlayouts/R/manipulate_layout.R |only graphlayouts-0.2.0/graphlayouts/R/spectral_function.R |only graphlayouts-0.2.0/graphlayouts/R/stress_function.R |only graphlayouts-0.2.0/graphlayouts/build |only graphlayouts-0.2.0/graphlayouts/inst |only graphlayouts-0.2.0/graphlayouts/man/backbone_layout.Rd |only graphlayouts-0.2.0/graphlayouts/man/centrality_layout.Rd |only graphlayouts-0.2.0/graphlayouts/man/focal_layout.Rd |only graphlayouts-0.2.0/graphlayouts/man/qgraph.Rd |only graphlayouts-0.2.0/graphlayouts/man/spectral_layout.Rd |only graphlayouts-0.2.0/graphlayouts/man/stress_layout.Rd |only graphlayouts-0.2.0/graphlayouts/vignettes |only graphlayouts-0.5.0/graphlayouts/DESCRIPTION | 15 - graphlayouts-0.5.0/graphlayouts/MD5 | 66 ++--- graphlayouts-0.5.0/graphlayouts/NAMESPACE | 8 graphlayouts-0.5.0/graphlayouts/NEWS.md | 11 graphlayouts-0.5.0/graphlayouts/R/RcppExports.R | 14 - graphlayouts-0.5.0/graphlayouts/R/annotate_functions.R | 17 - graphlayouts-0.5.0/graphlayouts/R/graph_manipulate.R |only graphlayouts-0.5.0/graphlayouts/R/graphlayouts.R | 5 graphlayouts-0.5.0/graphlayouts/R/layout_backbone.R |only graphlayouts-0.5.0/graphlayouts/R/layout_dynamic.R |only graphlayouts-0.5.0/graphlayouts/R/layout_large_graphs.R |only graphlayouts-0.5.0/graphlayouts/R/layout_manipulate.R |only graphlayouts-0.5.0/graphlayouts/R/layout_spectral.R |only graphlayouts-0.5.0/graphlayouts/R/layout_stress.R |only graphlayouts-0.5.0/graphlayouts/R/layouts.R | 62 +++-- graphlayouts-0.5.0/graphlayouts/README.md | 116 +++++++--- graphlayouts-0.5.0/graphlayouts/man/annotate_circle.Rd | 5 graphlayouts-0.5.0/graphlayouts/man/draw_circle.Rd | 9 graphlayouts-0.5.0/graphlayouts/man/figures/README-example_un-2.png |binary graphlayouts-0.5.0/graphlayouts/man/figures/README-flex_cent-1.png |binary graphlayouts-0.5.0/graphlayouts/man/figures/dynamic_ex.png |only graphlayouts-0.5.0/graphlayouts/man/figures/rt-net.png |only graphlayouts-0.5.0/graphlayouts/man/graph_manipulate.Rd | 17 - graphlayouts-0.5.0/graphlayouts/man/graphlayouts.Rd | 6 graphlayouts-0.5.0/graphlayouts/man/layout_backbone.Rd |only graphlayouts-0.5.0/graphlayouts/man/layout_centrality.Rd |only graphlayouts-0.5.0/graphlayouts/man/layout_dynamic.Rd |only graphlayouts-0.5.0/graphlayouts/man/layout_focus.Rd |only graphlayouts-0.5.0/graphlayouts/man/layout_manipulate.Rd | 6 graphlayouts-0.5.0/graphlayouts/man/layout_pmds.Rd |only graphlayouts-0.5.0/graphlayouts/man/layout_sparse_stress.Rd |only graphlayouts-0.5.0/graphlayouts/man/layout_spectral.Rd |only graphlayouts-0.5.0/graphlayouts/man/layout_stress.Rd |only graphlayouts-0.5.0/graphlayouts/src/RcppExports.cpp | 18 + graphlayouts-0.5.0/graphlayouts/src/sparseStress.cpp |only 49 files changed, 247 insertions(+), 128 deletions(-)
Title: Dose Transition Pathways for Continual Reassessment Method
Description: Provides the dose transition pathways (DTP) to project in advance
the doses recommended by a model-based design for subsequent patients (stay,
escalate, deescalate or stop early) using all the accumulated toxicity
information; See Yap et al (2017) <doi: 10.1158/1078-0432.CCR-17-0582>. DTP
can be used as a design and an operational tool and can be displayed as a
table or flow diagram. The 'dtpcrm' package also provides the modified
continual reassessment method (CRM) and time-to-event CRM (TITE-CRM) with
added practical considerations to allow stopping early when there is
sufficient evidence that the lowest dose is too toxic and/or there is a
sufficient number of patients dosed at the maximum tolerated dose.
Author: Christina Yap [aut, cre],
Daniel Slade [aut],
Kristian Brock [aut],
Yi Pan [aut]
Maintainer: Christina Yap <yapchristina17@gmail.com>
Diff between dtpcrm versions 0.1.0 dated 2019-04-10 and 0.1.1 dated 2019-08-20
DESCRIPTION | 6 MD5 | 12 R/stopping_delegates.R | 4 inst/doc/dtpcrm_vignettev02.R | 21 - inst/doc/dtpcrm_vignettev02.Rmd | 25 + inst/doc/dtpcrm_vignettev02.html | 634 ++++++++++++++++++++++++++++++--------- vignettes/dtpcrm_vignettev02.Rmd | 25 + 7 files changed, 549 insertions(+), 178 deletions(-)
Title: Visualizations of High-Dimensional Data
Description: Gives access to data visualisation methods that are relevant from the data scientist's point of view. The flagship idea of 'DataVisualizations' is the mirrored density plot (MD-plot) for either classified or non-classified multivariate data presented in Thrun et al. (2019) <arXiv:1908.06081>. The MD-plot outperforms the box-and-whisker diagram (box plot) and bean plot. Furthermore, a collection of various visualization methods for univariate data is provided. In the case of exploratory data analysis, 'DataVisualizations' makes it possible to inspect the distribution of each feature of a dataset visually through a combination of four methods. One of these methods is the Pareto density estimation (PDE) of the probability density function (pdf). Additionally, visualizations of the distribution of distances using PDE, the scatter-density plot using PDE for two variables as well as the Shepard density plot and the Bland-Altman plot are presented here. Pertaining to classified high-dimensional data, a number of visualizations are described, such as f.ex. the heat map and silhouette plot. A political map of the world or Germany can be visualized with the additional information defined by a classification of countries or regions. By extending the political map further, an uncomplicated function for a Choropleth map can be used which is useful for measurements across a geographic area. For categorical features, the Pie charts, slope charts and fan plots, improved by the ABC analysis, become usable. More detailed explanations are found in the book by Thrun, M.C.: "Projection-Based Clustering through Self-Organization and Swarm Intelligence" (2018) <doi:10.1007/978-3-658-20540-9>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Felix Pape [aut, rev],
Onno Hansen-Goos [ctr, ctb],
Alfred Ultsch [dtc, ctb]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DataVisualizations versions 1.1.6 dated 2019-03-08 and 1.1.8 dated 2019-08-20
DESCRIPTION | 21 MD5 | 86 + NAMESPACE | 5 R/ABCbarplot.R |only R/ClassBoxPlot.R | 32 R/ClassMDplot.R | 4 R/ClassPDEplot.R | 6 R/ClassPDEplotMaxLikeli.R | 24 R/DualaxisLinechart.R | 2 R/Fanplot.R | 2 R/Heatmap.R | 11 R/InspectScatterplots.R | 3 R/InspectVariable.R | 7 R/MDplot.R | 53 - R/OptimalNoBinsV2.R |only R/PDEplot.R | 4 R/ParetoDensityEstimationV2.R |only R/ParetoRadiusV2.R |only R/Piechart.R | 2 R/PlotMissingvalues.R | 2 R/QQplot.R | 4 R/Silhouetteplot.R | 2 R/Slopechart.R | 2 R/checkCls.R | 14 R/inPSphere2D.R | 2 R/stat_pde_density.R | 2 build/partial.rdb |binary build/vignette.rds |binary data/FundamentalData_Q1_2018.rda |only inst/doc/DataVisualizations.Rmd | 7 inst/doc/DataVisualizations.html | 1677 +++++++++++++++++++++++++++++++++----- man/ABCbarplot.Rd |only man/ClassBoxPlot.Rd | 5 man/ClassMDplot.Rd | 14 man/ClassPDEplot.Rd | 9 man/ClassPDEplotMaxLikeli.Rd | 14 man/DataVisualizations-package.Rd | 6 man/DualaxisLinechart.Rd | 2 man/FundamentalData_Q1_2018.Rd |only man/Heatmap.Rd | 2 man/InspectVariable.Rd | 11 man/MDplot.Rd | 17 man/MDplot4multiplevectors.Rd | 16 man/OptimalNoBinsV2.Rd |only man/ParetoDensityEstimationV2.Rd |only man/ParetoRadiusV2.Rd |only man/Plot3D.Rd | 2 man/SignedLog.Rd | 8 vignettes/DataVisualizations.Rmd | 7 49 files changed, 1742 insertions(+), 345 deletions(-)
More information about DataVisualizations at CRAN
Permanent link
Title: Fast and Easy Data Cleaning
Description: Data cleaning functions for classes 'logical',
'factor', 'numeric', 'character', 'currency' and 'Date' to make
data cleaning fast and easy. Relying on very few dependencies, it
provides smart guessing, but with user options to override
anything if needed.
Author: Matthijs S. Berends [aut, cre]
(<https://orcid.org/0000-0001-7620-1800>)
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Diff between clean versions 1.0.0 dated 2019-07-28 and 1.1.0 dated 2019-08-20
DESCRIPTION | 14 +- MD5 | 21 ++-- NAMESPACE | 36 ++++++ NEWS.md | 11 ++ R/clean.R | 81 ++++++++++++++- R/currency.R |only R/freq.R | 213 +++++++++++++++++++++++------------------ R/helpers.R | 17 ++- README.md | 74 ++++++++++++-- man/clean.Rd | 32 +++++- man/currency.Rd |only man/freq.Rd | 26 ++--- tests/testthat/test-currency.R |only 13 files changed, 380 insertions(+), 145 deletions(-)
Title: Bayesian Inference of Vector Autoregressive Models
Description: Assists in the set-up of algorithms for Bayesian inference of vector autoregressive (VAR) models. Functions for posterior simulation, forecasting, impulse response analysis and forecast error variance decomposition are largely based on the introductory texts of Koop and Korobilis (2010) <doi:10.1561/0800000013> and Luetkepohl (2007, ISBN: 9783540262398).
Author: Franz X. Mohr [aut, cre]
Maintainer: Franz X. Mohr <bvartools@outlook.com>
Diff between bvartools versions 0.0.1 dated 2019-06-11 and 0.0.2 dated 2019-08-20
DESCRIPTION | 10 ++--- MD5 | 69 +++++++++++++++++++++------------------ NAMESPACE | 2 + NEWS.md |only R/RcppExports.R | 11 ++++-- R/bvar.R | 11 ++++-- R/bvec_to_bvar.R | 6 ++- R/fevd.R | 2 - R/gen_var.R | 41 +++++++++++++++++------ R/gen_vec.R | 41 +++++++++++++++++++++-- R/irf.R | 6 ++- R/minnesota_prior.R |only R/plot.bvarfevd.R | 8 +++- R/predict.bvar.R | 38 +++++++++++++++++---- R/ssvs_prior.R |only build/vignette.rds |binary inst/doc/bsvar.Rmd | 1 inst/doc/bsvar.html | 12 ++++-- inst/doc/bvartools.Rmd | 6 ++- inst/doc/bvartools.html | 17 ++++++--- inst/doc/bvec.R | 1 inst/doc/bvec.Rmd | 1 inst/doc/bvec.html | 13 ++++--- inst/doc/ssvs.R | 10 +---- inst/doc/ssvs.Rmd | 10 +---- inst/doc/ssvs.html | 78 ++++++++++++++++++++++----------------------- man/minnesota_prior.Rd |only man/post_coint_kls.Rd | 2 - man/post_coint_kls_sur.Rd | 9 +++-- man/ssvs_prior.Rd |only src/kalman_dk.cpp | 4 +- src/post_coint_kls.cpp | 27 +++++++++------ src/post_coint_kls_sur.cpp | 39 +++++++++++++++------- src/post_normal_sur.cpp | 2 - vignettes/bsvar.Rmd | 1 vignettes/bvartools.Rmd | 6 ++- vignettes/bvec.Rmd | 1 vignettes/ssvs.Rmd | 10 +---- 38 files changed, 309 insertions(+), 186 deletions(-)
Title: True Random Numbers using the ANU Quantum Random Numbers Server
Description: The ANU Quantum Random Number Generator provided by the Australian National University
generates true random numbers in real-time by measuring the quantum fluctuations of the vacuum. This package offers an interface using their API.
The electromagnetic field of the vacuum exhibits random fluctuations in phase and amplitude at all frequencies.
By carefully measuring these fluctuations, one is able to generate ultra-high bandwidth random numbers.
The quantum Random Number Generator is based on the papers by Symul et al., (2011) <doi:10.1063/1.3597793>
and Haw, et al. (2015) <doi:10.1103/PhysRevApplied.3.054004>.
The package offers functions to retrieve a sequence of random integers or hexadecimals and true random samples from a normal or uniform distribution.
Author: Siegfried Köstlmeier [aut, cre]
(<https://orcid.org/0000-0002-7221-6981>),
Boris Steipe [ctb] (<https://orcid.org/0000-0002-1134-6758>)
Maintainer: Siegfried Köstlmeier <siegfried.koestlmeier@gmail.com>
Diff between qrandom versions 1.1 dated 2019-02-14 and 1.2 dated 2019-08-20
DESCRIPTION | 9 LICENSE | 678 ++++++++++++++++++------------------ MD5 | 40 +- NAMESPACE | 32 - R/qUUID.R | 152 ++++---- R/qrandom.R | 664 +++++++++++++++++------------------ R/qrandommaxint.R | 118 +++--- THANKS | 7 build/partial.rdb |binary man/qRandomSeq.Rd | 54 +- man/qUUID.Rd | 108 ++--- man/qrandom.Rd | 158 ++++---- man/qrandommaxint.Rd | 108 ++--- man/qrandomnorm.Rd | 206 +++++----- man/qrandomunif.Rd | 134 +++---- tests/testthat.R | 20 - tests/testthat/test-qUUID.R | 56 +- tests/testthat/test-qrandom.R | 56 +- tests/testthat/test-qrandommaxint.R | 46 +- tests/testthat/test-qrandomnorm.R | 32 - tests/testthat/test-qrandomunif.R | 38 +- 21 files changed, 1361 insertions(+), 1355 deletions(-)
Title: Tools to Read, Analyze and Visualize Metadynamics HILLS Files
from 'Plumed'
Description: Metadynamics is a state of the art biomolecular simulation technique.
'Plumed' Tribello, G.A. et al. (2014) <doi:10.1016/j.cpc.2013.09.018> program makes
it possible to perform metadynamics using various simulation codes. The results of
metadynamics done in 'Plumed' can be analyzed by 'metadynminer'. The package
'metadynminer' reads 1D and 2D metadynamics hills files from 'Plumed' package.
It uses a fast algorithm by Hosek, P. and Spiwok, V. (2016) <doi:10.1016/j.cpc.2015.08.037>
to calculate a free energy surface from hills. Minima can be located and plotted on
the free energy surface. Transition states can be analyzed by Nudged Elastic Band
method by Henkelman, G. and Jonsson, H. (2000) <doi:10.1063/1.1323224>. Free energy
surfaces, minima and transition paths can be plotted to produce publication quality
images.
Author: Vojtech Spiwok [aut, cre] (<https://orcid.org/0000-0001-8108-2033>)
Maintainer: Vojtech Spiwok <spiwokv@vscht.cz>
Diff between metadynminer versions 0.1.5 dated 2019-07-18 and 0.1.6 dated 2019-08-20
DESCRIPTION | 8 +++---- MD5 | 11 +++++----- NAMESPACE | 1 R/minimaandpaths.R | 12 +++++++++-- R/nebs.R | 4 +++ R/readingandfes.R | 54 +++++++++++++++++++++++++++++++++++++++++++++++++++++ man/prob.Rd |only 7 files changed, 79 insertions(+), 11 deletions(-)
Title: Systematic Analysis of Architectural Proteins and Functional
Elements in Blocking Long-Range Contacts Between Loci
Description: Here we propose a model to systematically analyze the roles of architectural proteins and functional elements in blocking long-range contacts between loci. The proposed model does not rely on topologically associating domain (TAD) mapping from Hi-C data. Instead of testing the enrichment or influence of protein binding at TAD borders, the model directly estimates the blocking effect of proteins on long-range contacts between flanking loci, making the model intuitive and biologically meaningful.
Author: Raphael Mourad
Maintainer: Raphael Mourad <raphael.mourad@ibcg.biotoul.fr>
Diff between HiCblock versions 1.4 dated 2018-04-18 and 1.5 dated 2019-08-20
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/HiCblockMiscFun.R | 2 +- build/partial.rdb |binary data/dataExample.RData |binary man/HiCblock-package.Rd | 4 ++++ 6 files changed, 14 insertions(+), 10 deletions(-)
Title: CML Calibration of Multi Stage Tests
Description: Conditional Maximum Likelihood Calibration and data management of multistage tests.
Functions for calibration of the Extended Nominal Response and the Interaction models, DIF and profile analysis.
See Robert J. Zwitser and Gunter Maris (2015)<doi:10.1007/s11336-013-9369-6>.
Author: Timo Bechger [aut, cre],
Jesse Koops [aut],
Ivailo Partchev [aut],
Gunter Maris [aut],
Robert Zwitser [ctb]
Maintainer: Timo Bechger <tmbechger@gmail.com>
Diff between dexterMST versions 0.1.1 dated 2018-10-29 and 0.1.2 dated 2019-08-20
dexterMST-0.1.1/dexterMST/tests/Rversions.R |only dexterMST-0.1.2/dexterMST/DESCRIPTION | 10 dexterMST-0.1.2/dexterMST/MD5 | 29 dexterMST-0.1.2/dexterMST/NEWS | 8 dexterMST-0.1.2/dexterMST/R/anon.R | 2 dexterMST-0.1.2/dexterMST/R/data_selection.R | 8 dexterMST-0.1.2/dexterMST/R/misc.R | 4 dexterMST-0.1.2/dexterMST/R/mst.R | 5 dexterMST-0.1.2/dexterMST/R/profile_analysis.R | 4 dexterMST-0.1.2/dexterMST/inst/doc/multistage_fundamentals.R | 15 dexterMST-0.1.2/dexterMST/inst/doc/multistage_fundamentals.Rmd | 15 dexterMST-0.1.2/dexterMST/inst/doc/multistage_fundamentals.html | 558 ++++++---- dexterMST-0.1.2/dexterMST/man/reexports.Rd | 2 dexterMST-0.1.2/dexterMST/src/misc.cpp | 2 dexterMST-0.1.2/dexterMST/tests/testthat/test_inputs.R | 9 dexterMST-0.1.2/dexterMST/vignettes/multistage_fundamentals.Rmd | 15 16 files changed, 451 insertions(+), 235 deletions(-)
Title: Test for Monotonicity in Expected Asset Returns, Sorted by
Portfolios
Description: Test for monotonicity in financial variables sorted by portfolios. It is conventional practice in empirical research to form portfolios of assets ranked by a certain sort variable. A t-test is then used to consider the mean return spread between the portfolios with the highest and lowest values of the sort variable. Yet comparing only the average returns on the top and bottom portfolios does not provide a sufficient way to test for a monotonic relation between expected returns and the sort variable. This package provides nonparametric tests for the full set of monotonic patterns by Patton, A. and Timmermann, A. (2010) <doi:10.1016/j.jfineco.2010.06.006> and compares the proposed results with extant alternatives such as t-tests, Bonferroni bounds, and multivariate inequality tests through empirical applications and simulations.
Author: Siegfried Köstlmeier [aut, cre, trl]
(<https://orcid.org/0000-0002-7221-6981>)
Maintainer: Siegfried Köstlmeier <siegfried.koestlmeier@gmail.com>
Diff between monotonicity versions 1.2 dated 2019-02-14 and 1.3 dated 2019-08-20
DESCRIPTION | 10 LICENSE | 14 - MD5 | 60 ++--- NAMESPACE | 34 +-- R/SB_variance.R | 84 +++---- R/matrix_conversion.R | 64 ++--- R/monoBonferroni.R | 102 ++++----- R/monoRelation.R | 342 ++++++++++++++++---------------- R/monoSummary.R | 194 +++++++++--------- R/monoUpDown.R | 226 ++++++++++----------- R/newey_west.R | 56 ++--- R/specify_decimal.R | 6 R/statBootstrap.R | 106 ++++----- R/wolak.R | 266 ++++++++++++------------ THANKS | 7 build/partial.rdb |binary man/demo_returns.Rd | 56 ++--- man/monoBonferroni.Rd | 116 +++++----- man/monoRelation.Rd | 112 +++++----- man/monoSummary.Rd | 143 +++++++------ man/monoUpDown.Rd | 92 ++++---- man/statBootstrap.Rd | 74 +++--- man/wolak.Rd | 147 +++++++------ tests/testthat.R | 24 +- tests/testthat/test-matrix_conversion.R |only tests/testthat/test-monoBonferroni.R | 23 +- tests/testthat/test-monoRelation.R | 65 +++--- tests/testthat/test-monoSummary.R | 74 ++++-- tests/testthat/test-monoUpDown.R | 59 +++-- tests/testthat/test-specify_decimal.R | 36 +-- tests/testthat/test-statBootstrap.R |only tests/testthat/test-wolak.R | 46 ++-- 32 files changed, 1360 insertions(+), 1278 deletions(-)
Title: Accelerating 'ggplot2'
Description: The aim of 'ggplot2' is to aid in visual data investigations. This
focus has led to a lack of facilities for composing specialised plots.
'ggforce' aims to be a collection of mainly new stats and geoms that fills
this gap. All additional functionality is aimed to come through the official
extension system so using 'ggforce' should be a stable experience.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between ggforce versions 0.3.0 dated 2019-08-09 and 0.3.1 dated 2019-08-20
DESCRIPTION | 6 ++--- MD5 | 36 ++++++++++++++++----------------- NEWS.md | 4 +++ R/arc_bar.R | 5 ++-- R/bezier.R | 57 ++++++++++++++++++++++++++++++++++++++++++++++++----- R/bspline.R | 3 ++ R/bspline_closed.R | 3 ++ R/diagonal.R | 16 +++++++------- R/diagonal_wide.R | 4 +-- R/ellipse.R | 8 +++---- R/link.R | 25 ++++++++++++++++++++++- R/mark_circle.R | 4 ++- R/mark_ellipse.R | 4 ++- R/mark_hull.R | 4 ++- R/mark_rect.R | 4 ++- R/regon.R | 2 - R/spiro.R | 14 ++++++------- R/voronoi.R | 4 +-- README.md | 9 +++----- 19 files changed, 150 insertions(+), 62 deletions(-)
Title: A Robust and Powerful Test of Abnormal Stock Returns in
Long-Horizon Event Studies
Description: Based on Dutta et al. (2018) <doi:10.1016/j.jempfin.2018.02.004>, this package provides their standardized test for abnormal returns in long-horizon event studies. The methods used improve the major weaknesses of size, power, and robustness of long-run statistical tests described in Kothari/Warner (2007) <doi:10.1016/B978-0-444-53265-7.50015-9>. Abnormal returns are weighted by their statistical precision (i.e., standard deviation), resulting in abnormal standardized returns. This procedure efficiently captures the heteroskedasticity problem. Clustering techniques following Cameron et al. (2011) <10.1198/jbes.2010.07136> are adopted for computing cross-sectional correlation robust standard errors. The statistical tests in this package therefore accounts for potential biases arising from returns' cross-sectional correlation, autocorrelation, and volatility clustering without power loss.
Author: Siegfried Köstlmeier [aut, cre]
(<https://orcid.org/0000-0002-7221-6981>),
Seppo Pynnonen [aut]
Maintainer: Siegfried Köstlmeier <siegfried.koestlmeier@gmail.com>
Diff between crseEventStudy versions 1.1 dated 2019-02-13 and 1.2 dated 2019-08-20
DESCRIPTION | 8 - LICENSE | 14 +- MD5 | 37 ++--- NAMESPACE | 20 +- R/asr.R | 72 +++++----- R/check_data.R | 40 ++--- R/crseEvent.R | 262 +++++++++++++++++++-------------------- R/sar.R | 68 +++++----- THANKS | 6 build/partial.rdb |binary man/asr.Rd | 84 ++++++------ man/crseEvent.Rd | 170 ++++++++++++------------- man/demo_returns.Rd | 42 +++--- man/demo_share_repurchases.Rd | 54 ++++---- man/sar.Rd | 86 ++++++------ tests/testthat.R | 17 +- tests/testthat/test-asr.R | 33 ++-- tests/testthat/test-check_data.R |only tests/testthat/test-crseEvent.R | 58 +++++--- tests/testthat/test-sar.R | 33 ++-- 20 files changed, 565 insertions(+), 539 deletions(-)
More information about crseEventStudy at CRAN
Permanent link
Title: Methods to Analyse Ring Re-Encounter Data
Description: R functions to read EURING data and analyse re-encounter data of birds marked by metal rings. For a tutorial, go to <http://www.tandfonline.com/doi/full/10.1080/03078698.2014.933053>.
Author: Fraenzi Korner-Nievergelt, Rob Robinson
Maintainer: Fraenzi Korner-Nievergelt <fraenzi.korner@vogelwarte.ch>
Diff between birdring versions 1.3 dated 2015-10-13 and 1.4 dated 2019-08-20
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/draw.recmap.Rd | 3 +++ 3 files changed, 10 insertions(+), 7 deletions(-)
Title: Download and Tidy Time Series Data from the Australian Bureau of
Statistics
Description: Downloads, imports, and tidies time series data from the
Australian Bureau of Statistics <https://www.abs.gov.au/>.
Author: Matt Cowgill [aut, cre],
Zoe Meers [aut],
Jaron Lee [aut],
David Diviny [ctb]
Maintainer: Matt Cowgill <mattcowgill@gmail.com>
Diff between readabs versions 0.4.0 dated 2019-06-07 and 0.4.1 dated 2019-08-20
DESCRIPTION | 10 ++-- MD5 | 31 +++++++------- NAMESPACE | 1 NEWS.md | 3 + R/download_abs.R | 3 - R/get_abs_xml_metadata.R | 8 ++- R/get_xml_df.R | 3 - R/separate_series.R | 39 +++++++++++++++--- README.md | 33 +++++++++------ build/vignette.rds |binary inst/doc/readabs_vignette.Rmd | 8 ++- inst/doc/readabs_vignette.html | 64 +++++++++++++++--------------- man/read_cpi.Rd | 2 man/separate_series.Rd | 11 +++-- tests/testdata/640101.xls |only tests/testthat/test_readabs.R | 87 +++++++++++++++++++++++++++-------------- vignettes/readabs_vignette.Rmd | 8 ++- 17 files changed, 196 insertions(+), 115 deletions(-)
Title: Global Sensitivity Analysis in Physiologically Based Kinetic
Modeling
Description: Applying the global sensitivity analysis workflow to investigate the parameter uncertainty and sensitivity in pharmacokinetic (PK) models, especially the physiologically-based pharmacokinetic (PBPK) model with multivariate outputs. The package also provide some functions to check the sensitivity measures and its convergence of model parameters.
Author: Nan-Hung Hsieh [aut, cre] (<https://orcid.org/0000-0003-0163-2766>),
Brad Reisfeld [aut],
Weihsueh A. Chiu [aut] (<https://orcid.org/0000-0002-7575-2368>)
Maintainer: Nan-Hung Hsieh <nhsieh@cvm.tamu.edu>
Diff between pksensi versions 1.1.2 dated 2019-06-30 and 1.1.3 dated 2019-08-20
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 5 +++++ R/install.R | 2 +- R/solve_fun.R | 24 ++++++++++-------------- inst/doc/pbpk_apap.Rmd | 14 +++++++------- inst/doc/pbpk_apap.html | 32 ++++++++++++++++---------------- inst/doc/pbtk1cpt.Rmd | 2 +- inst/doc/pbtk1cpt.html | 10 +++++----- man/mcsim.Rd | 2 +- man/solve_fun.Rd | 2 +- vignettes/pbpk_apap.Rmd | 14 +++++++------- vignettes/pbtk1cpt.Rmd | 2 +- 13 files changed, 70 insertions(+), 69 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.20 dated 2019-06-15 and 0.4.21 dated 2019-08-20
DESCRIPTION | 18 +- MD5 | 28 +-- NEWS | 6 R/foreign-conversion.r | 362 ++++++++++++++++++++++++++++------------------- R/read-avaspec-csv.r | 9 - R/read-tuv-file.r | 4 build/vignette.rds |binary inst/doc/user-guide.R | 53 +++--- inst/doc/user-guide.Rmd | 73 +++++---- inst/doc/user-guide.html | 131 +++++++++-------- man/as.colorSpec.Rd | 3 man/colorSpec2mspct.Rd | 14 + man/hyperSpec2mspct.Rd | 18 +- man/rspec2mspct.Rd | 26 +-- vignettes/user-guide.Rmd | 73 +++++---- 15 files changed, 468 insertions(+), 350 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.common versions 0.1.2 dated 2019-08-08 and 0.2.0 dated 2019-08-20
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 7 +++++++ R/client.R | 27 ++++++++++++++++++++------- R/config.R | 9 +++------ R/service.R | 4 ++-- man/new_service.Rd | 4 ++-- tests/testthat/test_client.R | 27 +++++++++++++++++++++------ tests/testthat/test_service.R | 4 ++-- 9 files changed, 68 insertions(+), 36 deletions(-)
Title: Calibrates and Reweights Units in Samples
Description: Provides user-friendly tools for calibration in survey sampling.
The package is production-oriented, and its interface is inspired by the famous
popular macro 'Calmar' for SAS, so that 'Calmar' users can quickly get used to
'icarus'. In addition to calibration (with linear, raking and logit methods),
'icarus' features functions for calibration on tight bounds and penalized
calibration.
Author: Antoine Rebecq [aut, cre]
Maintainer: Antoine Rebecq <antoine.rebecq@m4x.org>
Diff between icarus versions 0.3.0 dated 2017-03-04 and 0.3.1 dated 2019-08-20
icarus-0.3.0/icarus/data/ex2.RData |only icarus-0.3.0/icarus/man/calWeights_ex2.Rd |only icarus-0.3.0/icarus/man/data_ex2.Rd |only icarus-0.3.1/icarus/DESCRIPTION | 10 - icarus-0.3.1/icarus/MD5 | 61 +++---- icarus-0.3.1/icarus/NAMESPACE | 1 icarus-0.3.1/icarus/R/calibration.R | 23 +- icarus-0.3.1/icarus/R/calmarFunctions.R | 5 icarus-0.3.1/icarus/R/datasets.R | 12 - icarus-0.3.1/icarus/R/margins.R | 27 +++ icarus-0.3.1/icarus/R/modalities_functions.R | 4 icarus-0.3.1/icarus/README.md | 18 +- icarus-0.3.1/icarus/data/data_employees.RData |only icarus-0.3.1/icarus/data/datalist | 2 icarus-0.3.1/icarus/man/HTmean.Rd | 1 icarus-0.3.1/icarus/man/HTtotal.Rd | 1 icarus-0.3.1/icarus/man/addMargin.Rd | 1 icarus-0.3.1/icarus/man/calWeights_movies.Rd |only icarus-0.3.1/icarus/man/calibration.Rd | 31 ++- icarus-0.3.1/icarus/man/calibrationMarginStats.Rd | 10 - icarus-0.3.1/icarus/man/colToDummies.Rd | 1 icarus-0.3.1/icarus/man/dataPop.Rd | 7 icarus-0.3.1/icarus/man/data_employees.Rd |only icarus-0.3.1/icarus/man/marginStats.Rd | 9 - icarus-0.3.1/icarus/man/newMarginMatrix.Rd |only icarus-0.3.1/icarus/man/poptest_calmar.Rd | 7 icarus-0.3.1/icarus/man/poptest_calmar_nr.Rd | 7 icarus-0.3.1/icarus/man/regroupCalibrationModalities.Rd | 4 icarus-0.3.1/icarus/man/regroupModalities.Rd | 3 icarus-0.3.1/icarus/man/table_margins_1.Rd | 1 icarus-0.3.1/icarus/man/table_margins_2.Rd | 1 icarus-0.3.1/icarus/man/weightedMean.Rd | 1 icarus-0.3.1/icarus/man/weightedTotal.Rd | 1 icarus-0.3.1/icarus/tests/testthat/test_calibration.R | 84 +++++----- icarus-0.3.1/icarus/tests/testthat/test_calibration_small_dataset.R | 72 +++----- 35 files changed, 208 insertions(+), 197 deletions(-)
Title: Using the Theory of Belief Functions
Description: Using the Theory of Belief Functions for evidence calculus. Basic probability assignments, or mass functions, can be defined on the subsets of a set of possible values and combined. A mass function can be extended to a larger frame. Marginalization, i.e. reduction to a smaller frame can also be done. These features can be combined to analyze small belief networks and take into account situations where information cannot be satisfactorily described by probability distributions.
Author: Claude Boivin, Stat.ASSQ <webapp.cb@gmail.com>
Maintainer: Claude Boivin <webapp.cb@gmail.com>
Diff between dst versions 1.3.0 dated 2018-12-05 and 1.4.0 dated 2019-08-20
DESCRIPTION | 8 - MD5 | 26 ++--- NEWS | 7 + R/bcaRel.R | 1 R/dsrwon.R | 1 R/extmin.R | 4 R/productSpace.R | 8 - build/vignette.rds |binary inst/doc/Monty-hall-Example.R | 6 - inst/doc/Monty-hall-Example.Rmd | 6 - inst/doc/Monty-hall-Example.html | 179 +++++++++++++-------------------------- inst/dst.pdf |binary tests/testthat/test_extmin.R | 11 ++ vignettes/Monty-hall-Example.Rmd | 6 - 14 files changed, 108 insertions(+), 155 deletions(-)