Title: Query Plane Tickets using the 'Kiwi' API
Description: Query plane tickets, from several airlines, using the 'Kiwi' API
(similar to 'Google Flights').
The API is documented at <https://docs.kiwi.com/>.
Author: Juan Cruz Rodriguez [aut, cre]
Maintainer: Juan Cruz Rodriguez <jcrodriguez@unc.edu.ar>
Diff between rflights versions 0.1.102 dated 2019-08-05 and 0.1.103 dated 2019-09-18
DESCRIPTION | 6 - MD5 | 16 ++-- R/find-location.R | 4 - README.md | 117 ++++++++++++++---------------------- inst/doc/basic-usage-example.R | 40 +++++++----- inst/doc/basic-usage-example.Rmd | 32 +++++---- inst/doc/basic-usage-example.html | 122 ++++++++++++-------------------------- man/find_location.Rd | 4 - vignettes/basic-usage-example.Rmd | 32 +++++---- 9 files changed, 164 insertions(+), 209 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database manipulation and analysis,
including support for many 'NoSQL' databases, including document
databases ('Elasticsearch', 'CouchDB', 'MongoDB'),
'key-value' databases ('Redis'), and (with limitations)
SQLite/json1.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Rich FitzJohn [aut],
Jeroen Ooms [aut],
Ralf Herold [aut] (<https://orcid.org/0000-0002-8148-6748>)
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between nodbi versions 0.2.0 dated 2019-04-13 and 0.3.0 dated 2019-09-18
nodbi-0.2.0/nodbi/R/src_etcd.R |only nodbi-0.2.0/nodbi/man/src_etcd.Rd |only nodbi-0.2.0/nodbi/tests/testthat/test-etcd.R |only nodbi-0.3.0/nodbi/DESCRIPTION | 24 - nodbi-0.3.0/nodbi/LICENSE | 2 nodbi-0.3.0/nodbi/MD5 | 57 +-- nodbi-0.3.0/nodbi/NAMESPACE | 16 - nodbi-0.3.0/nodbi/NEWS.md | 18 + nodbi-0.3.0/nodbi/R/create.R | 282 ++++++++++++++++-- nodbi-0.3.0/nodbi/R/delete.R | 88 ++++- nodbi-0.3.0/nodbi/R/exists.R | 56 ++- nodbi-0.3.0/nodbi/R/get.R | 79 +++-- nodbi-0.3.0/nodbi/R/nodbi-package.R | 192 ++++++++++++ nodbi-0.3.0/nodbi/R/query.R | 376 +++++++++++++++++++++++- nodbi-0.3.0/nodbi/R/src.R | 7 nodbi-0.3.0/nodbi/R/src_mongo.R | 28 + nodbi-0.3.0/nodbi/R/src_sqlite.R |only nodbi-0.3.0/nodbi/R/update.R | 290 ++++++++++++++++++ nodbi-0.3.0/nodbi/README.md | 118 ++----- nodbi-0.3.0/nodbi/man/contacts.Rd |only nodbi-0.3.0/nodbi/man/docdb_create.Rd | 23 + nodbi-0.3.0/nodbi/man/docdb_delete.Rd | 19 - nodbi-0.3.0/nodbi/man/docdb_exists.Rd | 17 - nodbi-0.3.0/nodbi/man/docdb_get.Rd | 19 - nodbi-0.3.0/nodbi/man/docdb_query.Rd | 24 + nodbi-0.3.0/nodbi/man/docdb_update.Rd | 39 ++ nodbi-0.3.0/nodbi/man/nodbi-defunct.Rd |only nodbi-0.3.0/nodbi/man/nodbi-package.Rd | 5 nodbi-0.3.0/nodbi/man/src.Rd | 7 nodbi-0.3.0/nodbi/man/src_etcd-defunct.Rd |only nodbi-0.3.0/nodbi/man/src_sqlite.Rd |only nodbi-0.3.0/nodbi/tests/testthat/helper-nodbi.R | 8 nodbi-0.3.0/nodbi/tests/testthat/test-mongodb.R | 141 +++++++-- nodbi-0.3.0/nodbi/tests/testthat/test-sqlite.R |only 34 files changed, 1658 insertions(+), 277 deletions(-)
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees [aut, cre],
Jake Anderson [ctb],
Leonard Lisapaly [ctb],
Dave Harris [aut, cph]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RSEIS versions 3.8-3 dated 2018-08-22 and 3.9-0 dated 2019-09-18
DESCRIPTION | 8 MD5 | 17 +- R/AUGMENTbutfilt.R |only R/PreSet.Instr.R | 68 ++++++-- R/rseis2ts.R |only data/datalist |only man/AUGMENTbutfilt.Rd |only man/butfilt.Rd | 3 man/rdistaz.Rd | 2 man/rseis2ts.Rd |only src/LLNfilt.c | 419 ++++++++++++++++++++++++++------------------------ src/jpiki.c | 68 ++++---- 12 files changed, 330 insertions(+), 255 deletions(-)
Title: Organizing Data in a Hypercube
Description: Provides methods for organizing data in a hypercube
(i.e., a multi-dimensional cube). Cubes are generated from molten data frames.
Each cube can be manipulated with five operations: rotation (change.dimensionOrder()),
dicing and slicing (add.selection(), remove.selection()), drilling down (add.aggregation()),
and rolling up (remove.aggregation()).
Author: Michael Scholz
Maintainer: Michael Scholz <michael.scholz@uni-passau.de>
Diff between hypercube versions 0.1.0 dated 2017-12-15 and 0.2.0 dated 2019-09-18
hypercube-0.1.0/hypercube/man/changeDimensionOrder.Rd |only hypercube-0.2.0/hypercube/DESCRIPTION | 16 hypercube-0.2.0/hypercube/MD5 | 31 - hypercube-0.2.0/hypercube/NAMESPACE | 8 hypercube-0.2.0/hypercube/NEWS |only hypercube-0.2.0/hypercube/R/cube.R | 360 +++++++++++++---- hypercube-0.2.0/hypercube/R/hypercube-package.R | 8 hypercube-0.2.0/hypercube/man/add.aggregation.Rd | 11 hypercube-0.2.0/hypercube/man/add.selection.Rd | 9 hypercube-0.2.0/hypercube/man/as.data.frame.Cube.Rd | 7 hypercube-0.2.0/hypercube/man/change.dimensionOrder.Rd |only hypercube-0.2.0/hypercube/man/generateCube.Rd | 2 hypercube-0.2.0/hypercube/man/hypercube-package.Rd | 7 hypercube-0.2.0/hypercube/man/importance.Rd |only hypercube-0.2.0/hypercube/man/plot-Cube-method.Rd |only hypercube-0.2.0/hypercube/man/print.Importances.Rd |only hypercube-0.2.0/hypercube/man/remove.aggregation.Rd | 7 hypercube-0.2.0/hypercube/man/remove.selection.Rd | 7 hypercube-0.2.0/hypercube/man/show-Cube-method.Rd | 4 hypercube-0.2.0/hypercube/man/sparsity.Rd |only 20 files changed, 361 insertions(+), 116 deletions(-)
Title: Space-Time Change of Support
Description: Spatio-temporal change of support (STCOS) methods are designed for statistical inference
on geographic and time domains which differ from those on which the data were observed. In
particular, a parsimonious class of STCOS models supporting Gaussian outcomes was introduced
by Bradley, Wikle, and Holan <doi:10.1002/sta4.94>. The 'stcos' package contains tools which
facilitate use of STCOS models.
Author: Andrew M. Raim [aut, cre],
Scott H. Holan [aut, res],
Jonathan R. Bradley [aut, res],
Christopher K. Wikle [aut, res]
Maintainer: Andrew M. Raim <andrew.raim@gmail.com>
Diff between stcos versions 0.1.0 dated 2019-04-25 and 0.2.0 dated 2019-09-18
stcos-0.1.0/stcos/R/STCOSPrep.R |only stcos-0.1.0/stcos/R/basis_mc.R |only stcos-0.1.0/stcos/R/compute-overlap.R |only stcos-0.1.0/stcos/R/covVAR1.R |only stcos-0.1.0/stcos/R/gibbs.R |only stcos-0.1.0/stcos/R/mle.R |only stcos-0.1.0/stcos/R/rArea.R |only stcos-0.1.0/stcos/R/sptcovar.R |only stcos-0.1.0/stcos/inst/columbia/Rplot.pdf |only stcos-0.1.0/stcos/inst/columbia/areas-of-interest-map.pdf |only stcos-0.1.0/stcos/inst/columbia/columbia.R |only stcos-0.1.0/stcos/inst/columbia/compare2017-direct.pdf |only stcos-0.1.0/stcos/inst/columbia/compare2017-model.pdf |only stcos-0.1.0/stcos/inst/columbia/compare2017-scatter.pdf |only stcos-0.1.0/stcos/inst/columbia/data-prep-aff.R |only stcos-0.1.0/stcos/inst/columbia/data-prep-api.R |only stcos-0.1.0/stcos/inst/columbia/pca-reduction.pdf |only stcos-0.1.0/stcos/inst/columbia/spatial-knots.pdf |only stcos-0.1.0/stcos/inst/columbia/test.R |only stcos-0.1.0/stcos/inst/columbia/trace-varcomps.pdf |only stcos-0.1.0/stcos/man/STCOSPrep.Rd |only stcos-0.1.0/stcos/man/gibbs.Rd |only stcos-0.1.0/stcos/man/mle.stcos.Rd |only stcos-0.2.0/stcos/DESCRIPTION | 16 - stcos-0.2.0/stcos/MD5 | 80 +++++---- stcos-0.2.0/stcos/NAMESPACE | 28 ++- stcos-0.2.0/stcos/R/adjacency.R |only stcos-0.2.0/stcos/R/areal_spacetime_bisquare.R |only stcos-0.2.0/stcos/R/areal_spatial_bisquare.R |only stcos-0.2.0/stcos/R/autocov_VAR1.R |only stcos-0.2.0/stcos/R/cov_approx.R |only stcos-0.2.0/stcos/R/data.R | 2 stcos-0.2.0/stcos/R/gibbs_stcos.R |only stcos-0.2.0/stcos/R/licols.R | 40 ++-- stcos-0.2.0/stcos/R/mle_stcos.R |only stcos-0.2.0/stcos/R/overlap.R |only stcos-0.2.0/stcos/R/package.R | 8 stcos-0.2.0/stcos/R/prepare_stcos_demo.R |only stcos-0.2.0/stcos/R/rdomain.R |only stcos-0.2.0/stcos/R/spacetime_bisquare.R | 113 ++++++-------- stcos-0.2.0/stcos/R/spatial_bisquare.R | 89 ++++------- stcos-0.2.0/stcos/R/util.R | 51 ------ stcos-0.2.0/stcos/inst/columbia/00-data-prep-aff.R |only stcos-0.2.0/stcos/inst/columbia/00-data-prep-api.R |only stcos-0.2.0/stcos/inst/columbia/01-assemble-data.R |only stcos-0.2.0/stcos/inst/columbia/02-prepare-analysis.R |only stcos-0.2.0/stcos/inst/columbia/03-fit-gibbs.R |only stcos-0.2.0/stcos/inst/columbia/04-results.R |only stcos-0.2.0/stcos/inst/columbia/README.txt |only stcos-0.2.0/stcos/man/ArealSpaceTimeBisquareBasis.Rd |only stcos-0.2.0/stcos/man/ArealSpatialBisquareBasis.Rd |only stcos-0.2.0/stcos/man/Covariance-Approximation.Rd |only stcos-0.2.0/stcos/man/DIC.Rd | 23 -- stcos-0.2.0/stcos/man/SpaceTimeBisquareBasis.Rd | 74 ++++----- stcos-0.2.0/stcos/man/SpatialBisquareBasis.Rd | 60 +++---- stcos-0.2.0/stcos/man/acs_sf.Rd | 2 stcos-0.2.0/stcos/man/adjacency_matrix.Rd |only stcos-0.2.0/stcos/man/autocov_VAR1.Rd |only stcos-0.2.0/stcos/man/gibbs_stcos.Rd |only stcos-0.2.0/stcos/man/licols.Rd | 14 - stcos-0.2.0/stcos/man/mle_stcos.Rd |only stcos-0.2.0/stcos/man/overlap_matrix.Rd |only stcos-0.2.0/stcos/man/prepare_stcos_demo.Rd |only stcos-0.2.0/stcos/man/rdomain.Rd |only stcos-0.2.0/stcos/man/stcos.Rd | 8 stcos-0.2.0/stcos/src/bisquare_basis.cpp | 18 -- 66 files changed, 280 insertions(+), 346 deletions(-)
Title: Explaining and Visualizing Random Forests in Terms of Variable
Importance
Description: A set of tools to help explain which variables are most important in a random forests. Various variable importance measures are calculated and visualized in different settings in order to get an idea on how their importance changes depending on our criteria (Hemant Ishwaran and Udaya B. Kogalur and Eiran Z. Gorodeski and Andy J. Minn and Michael S. Lauer (2010) <doi:10.1198/jasa.2009.tm08622>, Leo Breiman (2001) <doi:10.1023/A:1010933404324>).
Author: Aleksandra Paluszynska [aut],
Przemyslaw Biecek [aut, ths],
Yue Jiang [aut, cre] (<https://orcid.org/0000-0002-9798-5517>)
Maintainer: Yue Jiang <rivehill@gmail.com>
Diff between randomForestExplainer versions 0.9 dated 2017-07-15 and 0.10.0 dated 2019-09-18
DESCRIPTION | 32 MD5 | 56 - NAMESPACE | 54 NEWS.md |only R/explain_forest.R | 104 + R/measure_importance.R | 795 ++++++++------ R/min_depth_distribution.R | 335 +++--- R/min_depth_interactions.R | 638 +++++++---- README.md | 54 build/vignette.rds |binary inst/doc/randomForestExplainer.R | 160 +- inst/doc/randomForestExplainer.Rmd | 458 ++++---- inst/doc/randomForestExplainer.html | 875 ++++++++++------ inst/templates/Explain_forest_template.Rmd | 208 +-- inst/templates/Explain_forest_template_interactions.Rmd | 92 - inst/testdata |only man/explain_forest.Rd | 78 - man/important_variables.Rd | 59 - man/measure_importance.Rd | 56 - man/min_depth_distribution.Rd | 43 man/min_depth_interactions.Rd | 60 - man/plot_importance_ggpairs.Rd | 57 - man/plot_importance_rankings.Rd | 57 - man/plot_min_depth_distribution.Rd | 72 - man/plot_min_depth_interactions.Rd | 56 - man/plot_multi_way_importance.Rd | 73 - man/plot_predict_interaction.Rd | 74 - tests |only vignettes/randomForestExplainer.Rmd | 458 ++++---- 29 files changed, 2824 insertions(+), 2180 deletions(-)
More information about randomForestExplainer at CRAN
Permanent link
Title: Create Data with Identical Statistics
Description: Creates data with identical statistics (metamers) using an iterative
algorithm proposed by Matejka & Fitzmaurice (2017) <DOI:10.1145/3025453.3025912>.
Author: Elio Campitelli [cre, aut] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between metamer versions 0.1.0 dated 2019-01-02 and 0.2.0 dated 2019-09-18
DESCRIPTION | 15 +++-- MD5 | 43 ++++++++------- NAMESPACE | 1 NEWS.md | 17 ++++++ R/draw-data.R | 3 + R/metamerize.R | 52 ++++++++++++++----- R/methods.R | 54 +++++++++++++++++++ R/sysdata.rda |only R/utilities.R | 23 +++++++- README.md | 84 +++++++++++++++++++++++-------- man/delayed_with.Rd | 1 man/densify.Rd | 1 man/draw_data.Rd | 1 man/figures/README-unnamed-chunk-1-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.gif |binary man/figures/README-unnamed-chunk-8-1.gif |binary man/mean_dist_to.Rd | 1 man/mean_self_proximity.Rd |only man/metamer-package.Rd | 10 +++ man/metamerize.Rd | 9 ++- man/moments_n.Rd | 3 - tests |only 23 files changed, 252 insertions(+), 66 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-15 0.2-7
2018-07-19 0.2-6
2018-05-22 0.2-5
2017-10-30 0.2-4
2017-08-02 0.2-3
2017-02-03 0.2-2
2016-11-24 0.2-1
2016-09-14 0.2-0
2016-08-03 0.1-6
Title: Ferguson-Klass Type Algorithm for Posterior Normalized Random
Measures
Description: Bayesian nonparametric density estimation modeling mixtures by a Ferguson-Klass type algorithm for posterior normalized random measures.
Author: Julyan Arbel [ctb],
Ernesto Barrios [aut],
Guillaume Kon Kam King [aut, cre],
Antonio Lijoi [aut],
Luis E. Nieto-Barajas [aut],
Igor Prünster [aut]
Maintainer: Guillaume Kon Kam King <guillaume.konkamking.work@gmail.com>
Diff between BNPdensity versions 2019.9.11 dated 2019-09-11 and 2019.9.18 dated 2019-09-18
CHANGES | 6 ++++++ DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ R/BNPdensity-package.R | 4 ++-- R/convert_fit_to_MCMC_chain.R | 10 +++------- R/mixture_density_functions.R | 6 ++++-- R/multMixNRMI.R | 6 ++++-- R/posterior_clustering_analysis.R | 2 +- README.md | 18 +++++++++--------- man/compute_thinning_grid.Rd | 3 --- man/enzyme.Rd | 2 +- man/plot_clustering_and_CDF.Rd | 2 +- man/salinity.Rd | 2 +- 13 files changed, 47 insertions(+), 44 deletions(-)
Title: Zipf Extended Distributions
Description: Implementation of four extensions of the Zipf distribution: the Marshall-Olkin
Extended Zipf (MOEZipf) Pérez-Casany, M., & Casellas, A. (2013) <arXiv:1304.4540>, the Zipf-Poisson Extreme (Zipf-PE), the
Zipf-Poisson Stopped Sum (Zipf-PSS) and the Zipf-Polylog distributions.
In log-log scale, the two first extensions allow for top-concavity
and top-convexity while the third one only allows for top-concavity.
All the extensions maintain the linearity associated with the Zipf model in the tail.
Author: Ariel Duarte-López [aut, cre] (<https://orcid.org/0000-0002-7432-0344>),
Marta Pérez-Casany [aut] (<https://orcid.org/0000-0003-3675-6902>)
Maintainer: Ariel Duarte-López <aduarte@ac.upc.edu>
Diff between zipfextR versions 1.0.0 dated 2018-03-14 and 1.0.1 dated 2019-09-18
DESCRIPTION | 16 +++++++------- MD5 | 48 ++++++++++++++++++++++++------------------ NAMESPACE | 23 ++++++++++++++++++++ R/getInitialValues.R | 28 +++++++++++++----------- R/moezipf.R | 20 ++++++++--------- R/moezipfFit.R | 26 ++++++++++++++++------ R/utils.R | 12 ++++++++++ R/zi_zipfpss.R |only R/zi_zipfpssFit.R |only R/zipfPolylog.R |only R/zipfPolylogFit.R |only R/zipfpe.R | 11 +++++---- R/zipfpeFit.R | 28 +++++++++++++++++------- R/zipfpss.R | 14 ++++++------ R/zipfpssFit.R | 41 +++++++++++++++++++++++------------ README.md | 2 + man/moezipf.Rd | 1 man/moezipfFit.Rd | 6 +++-- man/zi_zipfpss.Rd |only man/zi_zipfpssFit.Rd |only man/zipfPolylog.Rd |only man/zipfPolylogFit.Rd |only man/zipfpe.Rd | 1 man/zipfpeFit.Rd | 6 +++-- man/zipfpss.Rd | 1 man/zipfpssFit.Rd | 11 +++++---- man/zipfpssMoments.Rd | 3 +- tests/testthat/test-moezipf.R | 2 - tests/testthat/test-zpss.R | 2 - 29 files changed, 195 insertions(+), 107 deletions(-)
Title: Modeling Data with Functional Programming
Description: A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between lambda.r versions 1.2.3 dated 2018-05-17 and 1.2.4 dated 2019-09-18
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/framework.R | 22 +++++++++++----------- man/lambda.r-package.Rd | 4 ++-- 4 files changed, 20 insertions(+), 20 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics
Description: A collection of functions to create spatial weights matrix
objects from polygon 'contiguities', from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial 'autocorrelation',
including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord'
(1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel'
general cross product statistic, Empirical Bayes estimates and
'Assunção/Reis' (1999) <doi:10.1002/(SICI)1097-0258(19990830)18:16%3C2147::AID-SIM179%3E3.0.CO;2-I> Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992)
<doi:10.1111/j.1538-4632.1992.tb00261.x> and multicoloured
join count statistics, 'APLE' ('Li 'et al.' )
<doi:10.1111/j.1538-4632.2007.00708.x>, local 'Moran's I'
('Anselin' 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x> and
'Getis/Ord' G ('Ord' and 'Getis' 1995)
<doi:10.1111/j.1538-4632.1995.tb00912.x>,
'saddlepoint' approximations ('Tiefelsdorf' 2002)
<doi:10.1111/j.1538-4632.2002.tb01084.x> and exact tests
for global and local 'Moran's I' ('Bivand et al.' 2009)
<doi:10.1016/j.csda.2008.07.021> and 'LOSH' local indicators
of spatial heteroscedasticity ('Ord' and 'Getis')
<doi:10.1007/s00168-011-0492-y>. The implementation of most of
the measures is described in 'Bivand' and 'Wong' (2018)
<doi:10.1007/s11749-018-0599-x>.
'spdep' >= 1.1-1 corresponds to 'spatialreg' >= 1.1-1, in which the model
fitting functions are deprecated and pass through to 'spatialreg', but
will mask those in 'spatialreg'. From versions 1.2-1, the functions will
be made defunct in 'spdep'.
For now 'spatialreg' only has functions from 'spdep', where they are shown
as deprecated. 'spatialreg' only loads the namespace of 'spdep'; if you
attach 'spdep', the same functions in the other package will be masked.
Some feed through adequately, others do not.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assunção [ctb],
Olaf Berke [ctb],
Andrew Bernat [ctb],
Guillaume Blanchet [ctb],
Eric Blankmeyer [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stéphane Dray [ctb],
Virgilio Gómez-Rubio [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
Elias Krainski [ctb],
Pierre Legendre [ctb],
Nicholas Lewin-Koh [ctb],
Angela Li [ctb],
Hongfei Li [ctb],
Jielai Ma [ctb],
Abhirup Mallik [ctb, trl],
Giovanni Millo [ctb],
Werner Mueller [ctb],
Hisaji Ono [ctb],
Pedro Peres-Neto [ctb],
Gianfranco Piras [ctb],
Markus Reder [ctb],
Michael Tiefelsdorf [ctb],
René Westerholt [ctb],
Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 1.1-2 dated 2019-04-05 and 1.1-3 dated 2019-09-18
DESCRIPTION | 10 +++++----- MD5 | 36 ++++++++++++++++++------------------ R/edit.nb.R | 2 ++ R/poly2nb.R | 8 +++++--- build/vignette.rds |binary inst/doc/CO69.html | 10 +++++----- inst/doc/nb.pdf |binary inst/doc/nb_igraph.html | 2 +- inst/doc/nb_sf.Rmd | 2 +- inst/doc/nb_sf.html | 42 +++++++++++++++++++++--------------------- inst/doc/sids.Rmd | 2 +- inst/doc/sids.html | 18 +++++++++--------- man/edit.nb.Rd | 2 ++ man/joincount.multi.Rd | 2 +- man/localG.Rd | 7 +++++++ man/read.gal.Rd | 2 +- man/spdep-deprecated.Rd | 2 +- vignettes/nb_sf.Rmd | 2 +- vignettes/sids.Rmd | 2 +- 19 files changed, 82 insertions(+), 69 deletions(-)
Title: Evaluation of Model-Data Fit in Item Response Theory (IRT) and
Useful Functions Related to IRT
Description: Examine the IRT model-data fit on item-level
in different ways as well as provide useful functions related to unidimensional
item response theory (IRT). In terms of assessing the IRT model-data fit, one of
distinguished features of this package is that it gives not only well-known item
fit statistics (e.g., chi-square (X2), likelihood ratio chi-square (G2), infit and oufit statistics
(Ames & Penfield (2015) <doi:10.1111/emip.12067>)) but also graphical
displays to look at residuals between between the observed data and model-based
predictions (Hambleton, Swaminathan, & Rogers (1991, ISBN:9780803936478)).
More evaluation methods will be included in the future updated version.
In addition to the evaluation of IRT model-data fit, there are several
useful functions such as estimating proficiency parameters, calibrating item parameters
given the fixed effects (aka. ability values) (Baker & Kim (2004, ISBN:9780824758257)),
computing asymptotic variance-covariance matrices of item parameter estimates
(Li & Lissitz (2004) <doi:10.1111/j.1745-3984.2004.tb01109.x>), importing item and/or
ability parameters from popular IRT software, generating simulated data, computing
the conditional distribution of observed scores using the Lord-Wingersky recursion
formula (Lord & Wingersky (1984) <doi:10.1207/s15324818ame1002_1>),
computing item and test information functions, computing item and test
characteristic curve functions, and plotting item and test characteristic curves
and item and test information functions.
Author: Hwanggyu Lim [aut, cre],
Craig S. Wells [ctb]
Maintainer: Hwanggyu Lim <hglim83@gmail.com>
Diff between irtplay versions 1.0.0 dated 2019-08-24 and 1.1.0 dated 2019-09-18
DESCRIPTION | 8 - MD5 | 28 ++-- NEWS.md | 14 ++ R/est_item.R | 31 ++++- R/est_score.R | 41 +++++-- R/irtfit.R | 94 ++++++++++------ R/irtplay-package.R | 27 ++-- R/itemfit.R | 65 +++++++++-- R/loglike_score.R | 66 +++++++++++ R/plot_irtfit.R | 8 - README.md | 279 ++++++++++++++++++++++--------------------------- man/est_item.Rd | 2 man/irtfit.Rd | 54 ++++++--- man/irtplay-package.Rd | 27 ++-- man/plot.Rd | 6 - 15 files changed, 470 insertions(+), 280 deletions(-)
Title: General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Description: Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean.
Author: Genaro Sucarrat [aut, cre], Felix Pretis [aut], James Reade [aut]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between gets versions 0.19 dated 2019-07-10 and 0.20 dated 2019-09-18
DESCRIPTION | 10 MD5 | 105 +-- NAMESPACE | 4 NEWS | 51 + R/ES.R | 4 R/VaR.R | 4 R/arx.R | 59 +- R/coef.isat.R | 4 R/diagnostics.R | 41 + R/eqwma.R | 107 +-- R/fitted.isat.R | 8 R/gets-internal.R | 4 R/getsFun.R | 57 +- R/getsm.R | 28 - R/getsv.R | 2 R/infocrit.R | 8 R/isat.R | 357 +++++++------ R/leqwma.R | 7 R/logLik.arx.R | 39 - R/logLik.isat.R | 11 R/ols.R | 12 R/paths.R | 2 R/plot.arx.R | 4 R/predict.arx.R | 1359 +++++++++++++++++++++++++++++++++----------------- R/predict.gets.R | 251 +++++---- R/predict.isat.R | 181 +++--- R/print.gets.R | 10 R/print.isat.R | 124 ++-- R/recursive.R | 3 R/regressorsMean.R |only R/residuals.isat.R | 11 R/rsquared.R | 16 R/sigma.isat.R | 8 R/summary.arx.R | 11 R/summary.gets.R | 11 R/summary.isat.R | 11 R/terminals.R | 2 R/vcov.arx.R | 12 R/vcov.isat.R | 11 man/ES.Rd | 4 man/arx.Rd | 11 man/coef.arx.Rd | 30 - man/coef.gets.Rd | 41 - man/coef.isat.Rd | 41 - man/diagnostics.Rd | 26 man/eqwma.Rd | 29 - man/gets-package.Rd | 12 man/getsFun.Rd | 13 man/isat.Rd | 12 man/isatloop.Rd | 2 man/mvrnormsim.Rd | 3 man/ols.Rd | 12 man/paths.Rd | 7 man/predict.arx.Rd |only man/regressorsMean.Rd |only 55 files changed, 1918 insertions(+), 1274 deletions(-)
Title: Lightweight Access to the 'Geospatial Data Abstraction Library'
('GDAL')
Description: Provides low-level access to 'GDAL' functionality for R packages. The aim is to minimize
the level of interpretation put on the 'GDAL' facilities, to enable direct use of it for a variety of purposes.
'GDAL' is the 'Geospatial Data Abstraction Library' a translator for raster and vector geospatial data formats
that presents a single raster abstract data model and single vector abstract data model to the calling application
for all supported formats <http://gdal.org/>. Other available packages 'rgdal' and 'sf' also provide access to
the 'GDAL' library, but neither can be used for these lower level tasks, and both do many other tasks.
Author: Michael Sumner [aut, cre] (<https://orcid.org/0000-0002-2471-7511>),
Simon Wotherspoon [ctb] (figured out the mechanism for the resampling
algorithm),
Mark Padgham [ctb] (helped get started :)),
Edzer Pebesma [ctb] (wrote allocate_attribute, copied here from sf),
Roger Bivand [ctb] (wrote configure.ac, copied here from rgdal),
Jim Hester [ctb] (wrote CollectorList.h, copied here from fs package),
Timothy Keitt [ctb] (wrote GetPointsInternal copied here from rgdal2
package),
Jeroen Ooms [ctb] (tweaked build process),
Dale Maschette [ctb] (created the hex logo)
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between vapour versions 0.2.0 dated 2019-05-06 and 0.3.0 dated 2019-09-18
DESCRIPTION | 12 MD5 | 69 ++-- NAMESPACE | 1 NEWS.md | 16 + R/RcppExports.R | 8 R/raster-info.R | 8 R/vapour-helpers.R | 4 R/vapour-package.R | 2 R/vapour_input_attributes.R | 5 R/vapour_input_geometry.R | 2 R/vapour_vsi_list.R |only README.md | 73 ++--- build/vignette.rds |binary configure | 529 +++++++++++++------------------------ configure.ac | 359 ++++++++++++------------- inst/WORDLIST | 4 inst/doc/vapour.Rmd | 4 inst/doc/vapour.html | 163 ++++++----- inst/extdata/gdal/sds.nc |only man/GDAL-library.Rd | 2 man/figures |only man/vapour-package.Rd | 2 man/vapour_geom_summary.Rd | 2 man/vapour_raster_info.Rd | 3 man/vapour_read_geometry.Rd | 2 man/vapour_report_attributes.Rd | 2 man/vapour_vsi_list.Rd |only src/RcppExports.cpp | 24 + src/VSIReadDirEx.cpp |only src/gdal_utils.cpp | 2 src/init.c | 2 src/rasterio.cpp | 17 - src/vapour.cpp | 47 ++- tests/testthat.R | 2 tests/testthat/test-features.R | 28 + tests/testthat/test-limit_skip_n.R | 30 ++ tests/testthat/test-raster-info.R | 29 +- vignettes/vapour.Rmd | 4 38 files changed, 757 insertions(+), 700 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Andre Simon [ctb] (the CSS files under inst/themes/ were derived from
the Highlight package http://www.andre-simon.de),
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Ben Baumer [ctb],
Brian Diggs [ctb],
Brian Zhang [ctb],
Cassio Pereira [ctb],
Christophe Dervieux [ctb],
David Hugh-Jones [ctb],
David Robinson [ctb],
Doug Hemken [ctb],
Duncan Murdoch [ctb],
Elio Campitelli [ctb],
Emily Riederer [ctb],
Fabian Hirschmann [ctb],
Fitch Simeon [ctb],
Forest Fang [ctb],
Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty),
Garrick Aden-Buie [ctb],
Gregoire Detrez [ctb],
Hadley Wickham [ctb],
Hao Zhu [ctb],
Heewon Jeon [ctb],
Henrik Bengtsson [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
Hodges Daniel [ctb],
Jake Burkhead [ctb],
James Manton [ctb],
Jared Lander [ctb],
Jason Punyon [ctb],
Javier Luraschi [ctb],
Jeff Arnold [ctb],
Jenny Bryan [ctb],
Jeremy Ashkenas [ctb, cph] (the CSS file at
inst/misc/docco-classic.css),
Jeremy Stephens [ctb],
Jim Hester [ctb],
Joe Cheng [ctb],
Johannes Ranke [ctb],
John Honaker [ctb],
John Muschelli [ctb],
Jonathan Keane [ctb],
JJ Allaire [ctb],
Johan Toloe [ctb],
Jonathan Sidi [ctb],
Joseph Larmarange [ctb],
Julien Barnier [ctb],
Kaiyin Zhong [ctb],
Kamil Slowikowski [ctb],
Karl Forner [ctb],
Kevin K. Smith [ctb],
Kirill Mueller [ctb],
Kohske Takahashi [ctb],
Lorenz Walthert [ctb],
Lucas Gallindo [ctb],
Marius Hofert [ctb],
Martin Modrák [ctb],
Michael Chirico [ctb],
Michael Friendly [ctb],
Michal Bojanowski [ctb],
Michel Kuhlmann [ctb],
Miller Patrick [ctb],
Nacho Caballero [ctb],
Nick Salkowski [ctb],
Niels Richard Hansen [ctb],
Noam Ross [ctb],
Obada Mahdi [ctb],
Qiang Li [ctb],
Ramnath Vaidyanathan [ctb],
Richard Cotton [ctb],
Robert Krzyzanowski [ctb],
Romain Francois [ctb],
Ruaridh Williamson [ctb],
Scott Kostyshak [ctb],
Sebastian Meyer [ctb],
Sietse Brouwer [ctb],
Simon de Bernard [ctb],
Sylvain Rousseau [ctb],
Taiyun Wei [ctb],
Thibaut Assus [ctb],
Thibaut Lamadon [ctb],
Thomas Leeper [ctb],
Tim Mastny [ctb],
Tom Torsney-Weir [ctb],
Trevor Davis [ctb],
Viktoras Veitas [ctb],
Weicheng Zhu [ctb],
Wush Wu [ctb],
Zachary Foster [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.24 dated 2019-08-08 and 1.25 dated 2019-09-18
knitr-1.24/knitr/tests/testit/test-hooks.R |only knitr-1.25/knitr/DESCRIPTION | 10 ++-- knitr-1.25/knitr/MD5 | 42 ++++++++--------- knitr-1.25/knitr/R/block.R | 11 ++-- knitr-1.25/knitr/R/engine.R | 9 --- knitr-1.25/knitr/R/hooks-latex.R | 11 +++- knitr-1.25/knitr/R/hooks-md.R | 32 +++++++++---- knitr-1.25/knitr/R/pattern.R | 2 knitr-1.25/knitr/R/plot.R | 7 +- knitr-1.25/knitr/R/table.R | 12 ++-- knitr-1.25/knitr/R/utils.R | 10 ++-- knitr-1.25/knitr/inst/doc/docco-linear.html | 4 - knitr-1.25/knitr/inst/doc/knit_expand.html | 4 - knitr-1.25/knitr/inst/doc/knit_print.html | 12 ++-- knitr-1.25/knitr/inst/doc/knitr-intro.html | 10 ++-- knitr-1.25/knitr/inst/doc/knitr-markdown.html | 2 knitr-1.25/knitr/inst/doc/knitr-refcard.pdf |binary knitr-1.25/knitr/inst/misc/docco-template.html | 4 - knitr-1.25/knitr/man/combine_words.Rd | 2 knitr-1.25/knitr/man/kable.Rd | 3 - knitr-1.25/knitr/tests/testit/test-hooks-md.R |only knitr-1.25/knitr/tests/testit/test-patterns.R | 61 +++++++++++++++---------- knitr-1.25/knitr/tests/testit/test-utils.R | 18 ++++--- 23 files changed, 153 insertions(+), 113 deletions(-)
Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by
the help of model performance, permutation variable importance (Fisher
et al. (2018) <arxiv:1801.01489>), ICE profiles, partial dependence
(Friedman J. H. (2001) <doi:10.1214/aos/1013203451>), further effects
plots, and variable contribution breakdown for single observations
(Gosiewska and Biecek (2019) <arxiv:1903.11420>). All tools are
implemented to work with case weights and allow for stratified
analysis. Furthermore, multiple flashlights can be combined and
analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between flashlight versions 0.1.0 dated 2019-08-25 and 0.2.0 dated 2019-09-18
DESCRIPTION | 20 - MD5 | 36 +- NAMESPACE | 11 NEWS.md | 14 R/is_flashlight.R | 12 R/light_breakdown.R |only R/light_importance.R | 6 R/plot_counts.R | 21 - R/plot_light_breakdown.R |only R/plot_light_effects.R | 4 README.md | 9 inst/doc/flashlight.R | 27 + inst/doc/flashlight.Rmd | 66 +++- inst/doc/flashlight.html | 682 +++++++++++++++++++++++--------------------- man/is.flashlight.Rd | 10 man/light_breakdown.Rd |only man/light_importance.Rd | 6 man/plot.light_breakdown.Rd |only man/plot.light_effects.Rd | 2 man/plot_counts.Rd | 10 vignettes/flashlight.Rmd | 66 +++- 21 files changed, 597 insertions(+), 405 deletions(-)
Title: Tools for Distance Metrics
Description: Provides tools for constructing, manipulating and using distance metrics.
Author: Fredrik Savje [aut, cre]
Maintainer: ORPHANED
Diff between distances versions 0.1.7.1 dated 2019-09-01 and 0.1.8 dated 2019-09-18
DESCRIPTION | 12 +++++------- MD5 | 20 ++++++++++---------- NEWS.md | 7 ++++++- src/libann/src/ANN.cpp | 6 +++--- src/libann/src/kd_fix_rad_search.cpp | 10 +++++----- src/libann/src/kd_pr_search.cpp | 12 ++++++------ src/libann/src/kd_search.cpp | 12 ++++++------ src/libann/src/kd_util.cpp | 10 +++++----- src/libann/src/pr_queue.h | 10 +++++----- src/libann/src/pr_queue_k.h | 2 +- tests/testthat/test_input_check.R | 28 +++++++++++++++++++++++++++- 11 files changed, 79 insertions(+), 50 deletions(-)
Title: Seeing Convergence Concepts in Action
Description: This is a pedagogical package, designed to help students understanding convergence of
random variables. It provides a way to investigate interactively various modes of
convergence (in probability, almost surely, in law and in mean) of a sequence of i.i.d.
random variables. Visualisation of simulated sample paths is possible through interactive
plots. The approach is illustrated by examples and exercises through the function
'investigate', as described in
Lafaye de Micheaux and Liquet (2009) <doi:10.1198/tas.2009.0032>.
The user can study his/her own sequences of random variables.
Author: Pierre Lafaye De Micheaux [aut, cre],
Benoit Liquet [aut]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between ConvergenceConcepts versions 1.2.1 dated 2017-04-15 and 1.2.2 dated 2019-09-18
DESCRIPTION | 19 ++++++++++++------- MD5 | 4 ++-- inst/HISTORY | 7 +++++++ 3 files changed, 21 insertions(+), 9 deletions(-)
More information about ConvergenceConcepts at CRAN
Permanent link
Title: Wrapper for 'tapkee' Dimension Reduction Library
Description: Wrapper for using 'tapkee' command line utility,
it allows to run it from inside R and catch the results for further analysis and plotting.
'Tapkee' is a program for fast dimension reduction, see 'package?tapkee' and <http://tapkee.lisitsyn.me/>
for installation and other details.
Author: Alexey Shipunov
Maintainer: Alexey Shipunov <dactylorhiza@gmail.com>
Diff between tapkee versions 1.0 dated 2019-03-29 and 1.1 dated 2019-09-18
DESCRIPTION | 16 ++++++----- MD5 | 17 +++++++---- NEWS | 5 +++ R/tapkee.r | 2 - TODO | 4 +- build |only inst |only man/Gen.dr.data.Rd | 3 +- man/Tapkee.Rd | 72 +++++++++++++++++++++++++++++++++++--------------- man/tapkee-package.Rd |only vignettes |only 11 files changed, 82 insertions(+), 37 deletions(-)
Title: Miscellaneous Functions from Alexey Shipunov
Description: A collection of functions for data manipulation, plotting and statistical computing, to use separately or with the book "Visual Statistics. Use R!": Shipunov (2019) <http://ashipunov.info/shipunov/software/r/r-en.htm>.
Most useful functions are probably Bclust(), Jclust() and BootA() which bootstrap hierarchical clustering; Recode...() which multiple recode in a fast, flexible and simple way; Misclass() which outputs confusion matrix even if classes are not concerted;
Overlap() which calculates overlaps of convex hulls from any projection; and Pleiad() which is fast and flexible correlogram. In fact, there are much more useful functions, please see documentation.
Author: Alexey Shipunov [aut, cre], Paul Murrell [ctb], Marcello D'Orazio [ctb], Stephen Turner [ctb], Eugeny Altshuler [ctb], Roland Rau [ctb], Marcus W Beck [ctb], Sebastian Gibb [ctb], Weiliang Qiu [ctb], Emmanuel Paradis [ctb], Roger Koenker [ctb], R Core Team [ctb]
Maintainer: Alexey Shipunov <dactylorhiza@gmail.com>
Diff between shipunov versions 1.2 dated 2019-06-12 and 1.3 dated 2019-09-18
DESCRIPTION | 8 +++--- MD5 | 48 ++++++++++++++++++++++----------------- NEWS | 13 ++++++++++ R/asmisc.r | 37 ------------------------------ R/bclust.r | 30 ++++++++---------------- R/biokey.r | 2 - R/cosine_dist.r |only R/dnn.r | 8 ++++++ R/gmoon.r | 23 ------------------ R/gradd.r |only R/minus_names.r |only R/mrh.r | 17 ++++++++----- R/recode.r | 30 ++++++++++++------------ R/rpart2newick.r |only R/vtcoeffs.r |only TODO | 26 +++++---------------- man/Bclust.Rd | 19 +++++++++------ man/Cosine.dist.Rd |only man/DNN.Rd | 16 ++++++++++++- man/Gower.dist.Rd | 8 ++++-- man/Gradd.Rd | 64 ++++++++++++++++++++++++++-------------------------- man/Hcoords.Rd | 2 - man/MRH.Rd | 56 ++++++++++++++++++++++++++++++--------------- man/Miney.Rd | 12 +++++---- man/Minus.names.Rd |only man/Misclass.Rd | 28 +++++++++++++++++----- man/Recode.Rd | 50 ++++++++++++++++++++++++++-------------- man/Rpart2newick.Rd |only man/VTcoeffs.Rd | 4 ++- 29 files changed, 263 insertions(+), 238 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the building blocks of
machine learning. Provides 'R6' objects for tasks, learners, resamplings,
and measures. The package is geared towards scalability and larger datasets
by supporting parallelization and out-of-memory data-backends like
databases. While 'mlr3' focuses on the core computational operations,
add-on packages provide additional functionality.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>),
Giuseppe Casalicchio [ctb] (<https://orcid.org/0000-0001-5324-5966>),
Stefan Coors [ctb] (<https://orcid.org/0000-0002-7465-2146>),
Quay Au [ctb] (<https://orcid.org/0000-0002-5252-8902>),
Martin Binder [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3 versions 0.1.2 dated 2019-08-25 and 0.1.3 dated 2019-09-18
mlr3-0.1.2/mlr3/R/hash_resample_result.R |only mlr3-0.1.2/mlr3/R/helper-parallelization.R |only mlr3-0.1.2/mlr3/man/hash_resample_result.Rd |only mlr3-0.1.3/mlr3/DESCRIPTION | 17 mlr3-0.1.3/mlr3/MD5 | 213 ++++---- mlr3-0.1.3/mlr3/NAMESPACE | 3 mlr3-0.1.3/mlr3/NEWS.md | 24 mlr3-0.1.3/mlr3/R/BenchmarkResult.R | 138 +++-- mlr3-0.1.3/mlr3/R/Learner.R | 57 +- mlr3-0.1.3/mlr3/R/LearnerClassif.R | 23 mlr3-0.1.3/mlr3/R/LearnerClassifFeatureless.R | 11 mlr3-0.1.3/mlr3/R/LearnerClassifRpart.R | 22 mlr3-0.1.3/mlr3/R/LearnerRegr.R | 18 mlr3-0.1.3/mlr3/R/LearnerRegrFeatureless.R | 14 mlr3-0.1.3/mlr3/R/LearnerRegrRpart.R | 22 mlr3-0.1.3/mlr3/R/Measure.R | 116 ++-- mlr3-0.1.3/mlr3/R/MeasureClassif.R | 11 mlr3-0.1.3/mlr3/R/MeasureClassifConfusion.R | 4 mlr3-0.1.3/mlr3/R/MeasureDebug.R |only mlr3-0.1.3/mlr3/R/MeasureElapsedTime.R | 3 mlr3-0.1.3/mlr3/R/MeasureOOBError.R | 5 mlr3-0.1.3/mlr3/R/MeasureRegr.R | 10 mlr3-0.1.3/mlr3/R/Prediction.R | 12 mlr3-0.1.3/mlr3/R/PredictionClassif.R | 84 +-- mlr3-0.1.3/mlr3/R/PredictionRegr.R | 73 +- mlr3-0.1.3/mlr3/R/ResampleResult.R | 86 +-- mlr3-0.1.3/mlr3/R/Resampling.R | 10 mlr3-0.1.3/mlr3/R/ResamplingBootstrap.R | 16 mlr3-0.1.3/mlr3/R/ResamplingCV.R | 19 mlr3-0.1.3/mlr3/R/ResamplingCustom.R | 2 mlr3-0.1.3/mlr3/R/ResamplingHoldout.R | 15 mlr3-0.1.3/mlr3/R/ResamplingRepeatedCV.R | 36 - mlr3-0.1.3/mlr3/R/ResamplingSubsampling.R | 19 mlr3-0.1.3/mlr3/R/Task.R | 18 mlr3-0.1.3/mlr3/R/TaskClassif.R | 6 mlr3-0.1.3/mlr3/R/TaskGenerator.R | 10 mlr3-0.1.3/mlr3/R/TaskGenerator2DNormals.R | 6 mlr3-0.1.3/mlr3/R/TaskGeneratorFriedman1.R | 6 mlr3-0.1.3/mlr3/R/TaskGeneratorSmiley.R | 6 mlr3-0.1.3/mlr3/R/TaskGeneratorXor.R | 6 mlr3-0.1.3/mlr3/R/TaskRegr.R | 2 mlr3-0.1.3/mlr3/R/assertions.R | 253 ++++------ mlr3-0.1.3/mlr3/R/benchmark.R | 19 mlr3-0.1.3/mlr3/R/benchmark_grid.R | 2 mlr3-0.1.3/mlr3/R/helper.R | 14 mlr3-0.1.3/mlr3/R/mlr_coercions.R | 6 mlr3-0.1.3/mlr3/R/mlr_learners.R | 6 mlr3-0.1.3/mlr3/R/mlr_measures.R | 6 mlr3-0.1.3/mlr3/R/mlr_reflections.R | 14 mlr3-0.1.3/mlr3/R/mlr_resamplings.R | 6 mlr3-0.1.3/mlr3/R/mlr_sugar.R | 2 mlr3-0.1.3/mlr3/R/mlr_task_generators.R | 6 mlr3-0.1.3/mlr3/R/mlr_tasks.R | 6 mlr3-0.1.3/mlr3/R/resample.R | 4 mlr3-0.1.3/mlr3/R/worker.R | 64 +- mlr3-0.1.3/mlr3/R/zzz.R | 1 mlr3-0.1.3/mlr3/README.md | 34 - mlr3-0.1.3/mlr3/build/partial.rdb |binary mlr3-0.1.3/mlr3/inst/testthat/helper_autotest.R | 13 mlr3-0.1.3/mlr3/inst/testthat/helper_debugging.R | 7 mlr3-0.1.3/mlr3/inst/testthat/helper_expectations.R | 51 +- mlr3-0.1.3/mlr3/man/BenchmarkResult.Rd | 59 +- mlr3-0.1.3/mlr3/man/Learner.Rd | 21 mlr3-0.1.3/mlr3/man/LearnerClassif.Rd | 19 mlr3-0.1.3/mlr3/man/LearnerRegr.Rd | 13 mlr3-0.1.3/mlr3/man/Measure.Rd | 59 +- mlr3-0.1.3/mlr3/man/MeasureClassif.Rd | 7 mlr3-0.1.3/mlr3/man/MeasureDebug.Rd |only mlr3-0.1.3/mlr3/man/MeasureRegr.Rd | 6 mlr3-0.1.3/mlr3/man/PredictionClassif.Rd | 6 mlr3-0.1.3/mlr3/man/PredictionRegr.Rd | 2 mlr3-0.1.3/mlr3/man/ResampleResult.Rd | 31 - mlr3-0.1.3/mlr3/man/Resampling.Rd | 6 mlr3-0.1.3/mlr3/man/Task.Rd | 9 mlr3-0.1.3/mlr3/man/TaskClassif.Rd | 8 mlr3-0.1.3/mlr3/man/TaskGenerator.Rd | 6 mlr3-0.1.3/mlr3/man/TaskGenerator2DNormals.Rd | 3 mlr3-0.1.3/mlr3/man/TaskGeneratorFriedman1.Rd | 3 mlr3-0.1.3/mlr3/man/TaskGeneratorSmiley.Rd | 3 mlr3-0.1.3/mlr3/man/TaskGeneratorXor.Rd | 3 mlr3-0.1.3/mlr3/man/TaskRegr.Rd | 2 mlr3-0.1.3/mlr3/man/benchmark.Rd | 14 mlr3-0.1.3/mlr3/man/benchmark_grid.Rd | 2 mlr3-0.1.3/mlr3/man/mlr_assertions.Rd | 29 - mlr3-0.1.3/mlr3/man/mlr_coercions.Rd | 2 mlr3-0.1.3/mlr3/man/mlr_learners.Rd | 6 mlr3-0.1.3/mlr3/man/mlr_measures.Rd | 6 mlr3-0.1.3/mlr3/man/mlr_reflections.Rd | 4 mlr3-0.1.3/mlr3/man/mlr_resamplings.Rd | 6 mlr3-0.1.3/mlr3/man/mlr_sugar.Rd | 2 mlr3-0.1.3/mlr3/man/mlr_task_generators.Rd | 6 mlr3-0.1.3/mlr3/man/mlr_tasks.Rd | 6 mlr3-0.1.3/mlr3/man/resample.Rd | 4 mlr3-0.1.3/mlr3/tests/testthat/test_DataBackendCbind.R | 2 mlr3-0.1.3/mlr3/tests/testthat/test_Learner.R | 12 mlr3-0.1.3/mlr3/tests/testthat/test_MeasureClassif.R | 2 mlr3-0.1.3/mlr3/tests/testthat/test_MeasureRegr.R | 2 mlr3-0.1.3/mlr3/tests/testthat/test_PredictionClassif.R | 9 mlr3-0.1.3/mlr3/tests/testthat/test_PredictionRegr.R | 8 mlr3-0.1.3/mlr3/tests/testthat/test_Task.R | 10 mlr3-0.1.3/mlr3/tests/testthat/test_TaskClassif.R | 3 mlr3-0.1.3/mlr3/tests/testthat/test_TaskRegr.R | 1 mlr3-0.1.3/mlr3/tests/testthat/test_benchmark.R | 47 + mlr3-0.1.3/mlr3/tests/testthat/test_errorhandling.R | 6 mlr3-0.1.3/mlr3/tests/testthat/test_fallback.R | 6 mlr3-0.1.3/mlr3/tests/testthat/test_mlr_measures.R | 2 mlr3-0.1.3/mlr3/tests/testthat/test_mlr_measures_classif_costs.R | 6 mlr3-0.1.3/mlr3/tests/testthat/test_parallel.R | 4 mlr3-0.1.3/mlr3/tests/testthat/test_predict.R | 29 + mlr3-0.1.3/mlr3/tests/testthat/test_resample.R | 10 110 files changed, 1209 insertions(+), 960 deletions(-)
Title: Access EPA 'ECHO' Data
Description: An R interface to United States Environmental
Protection Agency (EPA) Environmental Compliance
History Online ('ECHO') Application Program Interface
(API). 'ECHO' provides information about EPA permitted
facilities, discharges, and other reporting info
associated with permitted entities. Data are obtained
from <https://echo.epa.gov/>.
Author: Michael Schramm [aut, cre]
Maintainer: Michael Schramm <michael.schramm@ag.tamu.edu>
Diff between echor versions 0.1.2 dated 2019-02-03 and 0.1.3 dated 2019-09-18
DESCRIPTION | 10 MD5 | 49 +- NEWS.md | 12 R/helpers.R | 8 R/water.R | 15 README.md | 174 +++---- inst/doc/introduction.R | 3 inst/doc/introduction.Rmd | 3 inst/doc/introduction.html | 702 +++++++++++++++++++++++-------- man/downloadDMRs.Rd | 4 man/figures/README-example3-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary tests/testthat/api |only tests/testthat/helper.R |only tests/testthat/test-expected_errors.R | 4 tests/testthat/test-expected_objects.R | 134 ++++- vignettes/introduction.Rmd | 3 17 files changed, 789 insertions(+), 332 deletions(-)
Title: Directional Penalties for Optimal Matching in Observational
Studies
Description: Improves the balance of optimal matching with near-fine balance by giving penalties on the unbalanced covariates with the unbalanced directions. Many directional penalties can also be viewed as Lagrange multipliers, pushing a matched sample in the direction of satisfying a linear constraint that would not be satisfied without penalization.
Yu, R., and Rosenbaum, P. R. (2019). <doi:10.1111/biom.13098>.
Author: Ruoqi Yu
Maintainer: Ruoqi Yu <ruoqiyu@wharton.upenn.edu>
Diff between DiPs versions 0.4.0 dated 2019-08-27 and 0.5.0 dated 2019-09-18
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/match.R | 21 +++++++++++++-------- R/net.R | 47 ++++++++++++++++++++++++++++++++++++++++++++++- man/match.Rd | 4 +++- man/net.Rd | 3 ++- 6 files changed, 72 insertions(+), 19 deletions(-)
Title: Read Data Files from ActiGraph Monitors
Description: Standardize the process of bringing various modes of output files
into R. Additionally, processes are provided to read and minimally pre-
process raw data from primary accelerometer and inertial measurement unit files,
as well as binary .gt3x files. ActiGraph monitors are used to estimate physical
activity outcomes via body-worn sensors that measure (e.g.) acceleration or
rotational velocity.
Author: Paul R. Hibbing [aut, cre],
Vincent T. van Hees [ctb],
Samuel R. LaMunion [ctb],
Daniel Judge [ctb],
Judge Maygarden [ctb],
ActiGraph LLC [cph]
Maintainer: Paul R. Hibbing <paulhibbing@gmail.com>
Diff between AGread versions 0.2.2 dated 2019-03-13 and 1.0.0 dated 2019-09-18
AGread-0.2.2/AGread/R/Data.R |only AGread-0.2.2/AGread/R/Dates&Times.R |only AGread-0.2.2/AGread/R/File_Reading_Helper_Functions.R |only AGread-0.2.2/AGread/R/Finished_Payload_Functions.R |only AGread-0.2.2/AGread/R/IMU_Filter.R |only AGread-0.2.2/AGread/R/Interpolation.R |only AGread-0.2.2/AGread/R/Magnetometer_Directions.R |only AGread-0.2.2/AGread/R/Messages.R |only AGread-0.2.2/AGread/R/PARAMETERS_payload.R |only AGread-0.2.2/AGread/R/PARAMETERS_payload_parsers_CHILD.R |only AGread-0.2.2/AGread/R/PARAMETERS_payload_parsers_PARENT.R |only AGread-0.2.2/AGread/R/Reintegrate_Helper_Functions.R |only AGread-0.2.2/AGread/R/SENSOR_DATA_payload.R |only AGread-0.2.2/AGread/R/SENSOR_SCHEMA_payload.R |only AGread-0.2.2/AGread/R/Unfinished_Payload_Functions.R |only AGread-0.2.2/AGread/R/Utils_3x_read.R |only AGread-0.2.2/AGread/R/Utils_headers.R |only AGread-0.2.2/AGread/R/ag_imu_format.R |only AGread-0.2.2/AGread/R/ag_raw_format.R |only AGread-0.2.2/AGread/R/calibrate_raw.R |only AGread-0.2.2/AGread/R/checksum_calculate.R |only AGread-0.2.2/AGread/R/file_size.R |only AGread-0.2.2/AGread/R/get_record_header.R |only AGread-0.2.2/AGread/R/process_record_set.R |only AGread-0.2.2/AGread/R/read_3x_payload_functions.R |only AGread-0.2.2/AGread/R/read_AG_raw_block.R |only AGread-0.2.2/AGread/R/read_record.R |only AGread-0.2.2/AGread/R/timestamp_recalc.R |only AGread-0.2.2/AGread/R/vector_magnitude.R |only AGread-0.2.2/AGread/inst/extdata/TestID_LeftWrist_RAW.csv |only AGread-0.2.2/AGread/inst/extdata/example1sec.agd |only AGread-0.2.2/AGread/man/checksum_calculate.Rd |only AGread-0.2.2/AGread/man/collapse_records.Rd |only AGread-0.2.2/AGread/man/get_duration.Rd |only AGread-0.2.2/AGread/man/name_log.Rd |only AGread-0.2.2/AGread/man/payload_parse.Rd |only AGread-0.2.2/AGread/man/payload_parse_activity2_26.Rd |only AGread-0.2.2/AGread/man/payload_parse_activity_0.Rd |only AGread-0.2.2/AGread/man/payload_parse_battery_2.Rd |only AGread-0.2.2/AGread/man/payload_parse_capsense_13.Rd |only AGread-0.2.2/AGread/man/payload_parse_epoch_12.Rd |only AGread-0.2.2/AGread/man/payload_parse_epoch_15.Rd |only AGread-0.2.2/AGread/man/payload_parse_epoch_16.Rd |only AGread-0.2.2/AGread/man/payload_parse_epoch_9.Rd |only AGread-0.2.2/AGread/man/payload_parse_event_3.Rd |only AGread-0.2.2/AGread/man/payload_parse_heart_ant_11.Rd |only AGread-0.2.2/AGread/man/payload_parse_heart_ble_14.Rd |only AGread-0.2.2/AGread/man/payload_parse_heart_rate_4.Rd |only AGread-0.2.2/AGread/man/payload_parse_infodata_6.Rd |only AGread-0.2.2/AGread/man/payload_parse_lux_5.Rd |only AGread-0.2.2/AGread/man/payload_parse_parameters_21.Rd |only AGread-0.2.2/AGread/man/payload_parse_sensor_schema_24.Rd |only AGread-0.2.2/AGread/man/payload_parse_tag_7.Rd |only AGread-0.2.2/AGread/man/post_process.Rd |only AGread-0.2.2/AGread/man/process_record_set.Rd |only AGread-0.2.2/AGread/man/read_record.Rd |only AGread-0.2.2/AGread/man/timestamp_recalc.Rd |only AGread-0.2.2/AGread/tests/testthat/IMU_read_cache.rds |only AGread-1.0.0/AGread/DESCRIPTION | 18 AGread-1.0.0/AGread/MD5 | 295 AGread-1.0.0/AGread/NAMESPACE | 14 AGread-1.0.0/AGread/NEWS.md | 101 AGread-1.0.0/AGread/R/AGread-deprecated.R |only AGread-1.0.0/AGread/R/AGread.R | 17 AGread-1.0.0/AGread/R/AGread_Data.R |only AGread-1.0.0/AGread/R/AGread_Dates&Times.R |only AGread-1.0.0/AGread/R/AGread_Messages.R |only AGread-1.0.0/AGread/R/AGread_utils.R |only AGread-1.0.0/AGread/R/RcppExports.R |only AGread-1.0.0/AGread/R/Read_Counts.R | 36 AGread-1.0.0/AGread/R/Read_IMU.R | 21 AGread-1.0.0/AGread/R/Read_IMU_Filter.R |only AGread-1.0.0/AGread/R/Read_IMU_Format.R |only AGread-1.0.0/AGread/R/Read_IMU_Magnetometer_Directions.R |only AGread-1.0.0/AGread/R/Read_IMU_Utils.R |only AGread-1.0.0/AGread/R/Read_Raw.R | 55 AGread-1.0.0/AGread/R/Read_Raw_Calibrate.R |only AGread-1.0.0/AGread/R/Read_Raw_Utils.R |only AGread-1.0.0/AGread/R/Reintegrate_Utils.R |only AGread-1.0.0/AGread/R/check_gaps.R |only AGread-1.0.0/AGread/R/collapse_gt3x.R | 4 AGread-1.0.0/AGread/R/collapse_packet_set.R |only AGread-1.0.0/AGread/R/parse_log_bin.R | 144 AGread-1.0.0/AGread/R/parse_log_bin_utils.R |only AGread-1.0.0/AGread/R/parse_packet_set_ACTIVITY2.R |only AGread-1.0.0/AGread/R/parse_packet_set_CAPSENSE&METADATA.R |only AGread-1.0.0/AGread/R/parse_packet_set_SENSOR_DATA.R |only AGread-1.0.0/AGread/R/parse_packet_set_SENSOR_SCHEMA.R |only AGread-1.0.0/AGread/R/parse_packet_set__generic_&_simple_methods.R |only AGread-1.0.0/AGread/R/payload_PARAMETERS.R |only AGread-1.0.0/AGread/R/payload_PARAMETERS_CHILD.R |only AGread-1.0.0/AGread/R/payload_PARAMETERS_PARENT.R |only AGread-1.0.0/AGread/R/payload_SENSOR_DATA.R |only AGread-1.0.0/AGread/R/read_Raw_Block.R |only AGread-1.0.0/AGread/R/read_gt3x.R | 31 AGread-1.0.0/AGread/R/read_gt3x_Interpolate2.R |only AGread-1.0.0/AGread/R/read_gt3x_Interpolation.R |only AGread-1.0.0/AGread/R/read_gt3x_utils.R |only AGread-1.0.0/AGread/R/zzz.R | 2 AGread-1.0.0/AGread/README.md | 29 AGread-1.0.0/AGread/inst/CITATION | 6 AGread-1.0.0/AGread/inst/extdata/example-IMU.csv |19318 ---------- AGread-1.0.0/AGread/inst/extdata/exampleRAW.csv | 5420 -- AGread-1.0.0/AGread/man/AG_binary.Rd | 2 AGread-1.0.0/AGread/man/AG_collapse.Rd | 5 AGread-1.0.0/AGread/man/AG_round.Rd | 2 AGread-1.0.0/AGread/man/AGread-deprecated.Rd |only AGread-1.0.0/AGread/man/AGread.Rd | 15 AGread-1.0.0/AGread/man/ag_imu_format.Rd | 6 AGread-1.0.0/AGread/man/ag_raw_format.Rd | 2 AGread-1.0.0/AGread/man/bin_int.Rd | 2 AGread-1.0.0/AGread/man/calibrate_raw.Rd | 2 AGread-1.0.0/AGread/man/capability_collapse.Rd | 2 AGread-1.0.0/AGread/man/check_columns.Rd | 7 AGread-1.0.0/AGread/man/check_gaps.Rd |only AGread-1.0.0/AGread/man/check_id.Rd |only AGread-1.0.0/AGread/man/check_second.Rd | 5 AGread-1.0.0/AGread/man/checksumC.Rd |only AGread-1.0.0/AGread/man/classify_magnetometer.Rd | 2 AGread-1.0.0/AGread/man/collapse_gt3x.Rd | 4 AGread-1.0.0/AGread/man/collapse_packet_set.Rd |only AGread-1.0.0/AGread/man/get_VM.Rd | 8 AGread-1.0.0/AGread/man/get_blocks.Rd | 2 AGread-1.0.0/AGread/man/get_day_of_year.Rd | 2 AGread-1.0.0/AGread/man/get_duration-deprecated.Rd |only AGread-1.0.0/AGread/man/get_file_size__gb.Rd | 2 AGread-1.0.0/AGread/man/get_float_value.Rd | 2 AGread-1.0.0/AGread/man/get_headers.Rd | 6 AGread-1.0.0/AGread/man/get_imu_file_meta.Rd | 2 AGread-1.0.0/AGread/man/get_minute.Rd | 2 AGread-1.0.0/AGread/man/get_primary_accel_scale.Rd |only AGread-1.0.0/AGread/man/get_raw_file_meta.Rd | 4 AGread-1.0.0/AGread/man/get_sensor_column.Rd | 2 AGread-1.0.0/AGread/man/get_short.Rd |only AGread-1.0.0/AGread/man/get_value.Rd | 2 AGread-1.0.0/AGread/man/imu_collapse.Rd | 5 AGread-1.0.0/AGread/man/imu_df.Rd |only AGread-1.0.0/AGread/man/imu_filter_gyroscope.Rd | 2 AGread-1.0.0/AGread/man/imu_name_label.Rd | 2 AGread-1.0.0/AGread/man/imu_to_check.Rd | 2 AGread-1.0.0/AGread/man/imu_to_collapse.Rd | 2 AGread-1.0.0/AGread/man/imu_var_collapse.Rd | 2 AGread-1.0.0/AGread/man/interpolate_sensor_records.Rd | 4 AGread-1.0.0/AGread/man/interval_match.Rd |only AGread-1.0.0/AGread/man/message_update.Rd | 2 AGread-1.0.0/AGread/man/packet_print.Rd |only AGread-1.0.0/AGread/man/par_battery_state.Rd | 2 AGread-1.0.0/AGread/man/par_battery_voltage.Rd | 4 AGread-1.0.0/AGread/man/par_calibration_time.Rd | 4 AGread-1.0.0/AGread/man/par_display_capabilities.Rd | 2 AGread-1.0.0/AGread/man/par_display_configuration.Rd | 2 AGread-1.0.0/AGread/man/par_feature_capabilities.Rd | 2 AGread-1.0.0/AGread/man/par_feature_enable.Rd | 2 AGread-1.0.0/AGread/man/par_firmware_version.Rd | 4 AGread-1.0.0/AGread/man/par_memory_size.Rd | 2 AGread-1.0.0/AGread/man/par_sensor_configuration.Rd | 2 AGread-1.0.0/AGread/man/par_wireless_mode.Rd | 2 AGread-1.0.0/AGread/man/par_wireless_serial_number.Rd | 4 AGread-1.0.0/AGread/man/parse_IMU_C.Rd |only AGread-1.0.0/AGread/man/parse_log_bin.Rd | 17 AGread-1.0.0/AGread/man/parse_packet_set.Rd |only AGread-1.0.0/AGread/man/parse_primary_accelerometerC.Rd |only AGread-1.0.0/AGread/man/payload_parse_activity2_26C.Rd |only AGread-1.0.0/AGread/man/payload_parse_sensor_data_25.Rd | 16 AGread-1.0.0/AGread/man/payload_parse_sensor_data_25C.Rd |only AGread-1.0.0/AGread/man/print_progC.Rd |only AGread-1.0.0/AGread/man/process_parameters.Rd | 11 AGread-1.0.0/AGread/man/raw_to_collapse.Rd | 2 AGread-1.0.0/AGread/man/read_AG_IMU.Rd | 7 AGread-1.0.0/AGread/man/read_AG_counts.Rd | 3 AGread-1.0.0/AGread/man/read_AG_raw.Rd | 9 AGread-1.0.0/AGread/man/read_AG_raw_block.Rd | 2 AGread-1.0.0/AGread/man/read_gt3x.Rd | 14 AGread-1.0.0/AGread/man/rm_trail_na.Rd | 2 AGread-1.0.0/AGread/man/schema_meta.Rd | 4 AGread-1.0.0/AGread/man/select_records.Rd | 2 AGread-1.0.0/AGread/man/sensor_resample.Rd |only AGread-1.0.0/AGread/man/seq_interpolate.Rd | 2 AGread-1.0.0/AGread/man/setup_payload.Rd |only AGread-1.0.0/AGread/man/sort_records.Rd | 2 AGread-1.0.0/AGread/man/tick_to_posix.Rd | 2 AGread-1.0.0/AGread/man/update_key.Rd | 2 AGread-1.0.0/AGread/man/validate_include.Rd |only AGread-1.0.0/AGread/man/zero2one.Rd |only AGread-1.0.0/AGread/src |only AGread-1.0.0/AGread/tests/testthat/IMU_read_cache_1.rds |only AGread-1.0.0/AGread/tests/testthat/IMU_read_cache_5.rds |only AGread-1.0.0/AGread/tests/testthat/RAW_read_cache_1.rds |binary AGread-1.0.0/AGread/tests/testthat/RAW_read_cache_5.rds |binary AGread-1.0.0/AGread/tests/testthat/counts_read_cache.rds |binary AGread-1.0.0/AGread/tests/testthat/interpolate_cache.rds |only AGread-1.0.0/AGread/tests/testthat/read_3x_imu.rds |binary AGread-1.0.0/AGread/tests/testthat/read_3x_imu_1s.rds |binary AGread-1.0.0/AGread/tests/testthat/read_3x_raw.rds |binary AGread-1.0.0/AGread/tests/testthat/test_IMU.R | 13 AGread-1.0.0/AGread/tests/testthat/test_RAW.R | 15 AGread-1.0.0/AGread/tests/testthat/test_counts.R | 2 AGread-1.0.0/AGread/tests/testthat/test_equivalence.R | 199 AGread-1.0.0/AGread/tests/testthat/test_interpolate.R |only 199 files changed, 2571 insertions(+), 23409 deletions(-)