Title: Detecting New Signals under Background Mismodelling
Description: Given a postulated model and a set of data, the comparison density is estimated and the deviance test is implemented in order to assess if the data distribution deviates significantly from the postulated model. Finally, the results are summarized in a CD-plot as described in Algeri S. (2019) <arXiv:1906.06615>.
Author: Sara Algeri <salgeri@umn.edu>, Haoran Liu<liu00728@umn.edu>
Maintainer: Sara Algeri <salgeri@umn.edu>
Diff between LPBkg versions 1.1.4 dated 2019-09-27 and 1.2 dated 2019-10-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/LPBkg.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Landscape Epidemiology and Evolution
Description: A spatio-temporal stochastic model to assess resistance deployment strategies
against plant pathogens. The model is based on stochastic geometry for describing the
landscape and the resistant hosts, a dispersal kernel for the dissemination of the
pathogen, and a SEIR (Susceptible-Exposed-Infectious-Removed) architecture to simulate
plant response to disease.
Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett,
Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.
Author: Loup Rimbaud [aut],
Julien Papaix [aut],
Jean-Francois Rey [cre]
Maintainer: Jean-Francois Rey <jean-francois.rey@inra.fr>
Diff between landsepi versions 0.0.7 dated 2019-01-14 and 0.0.8 dated 2019-10-04
DESCRIPTION | 8 +++---- MD5 | 19 +++++++++-------- R/landsepi.R | 4 +-- configure | 2 - configure.ac | 2 - data/dispH.rda |binary data/dispP_a40_b7.rda |binary data/landscapesTEST.rda |binary man/landsepi-package.Rd | 4 +-- src/Makevars.win | 53 +++++++++++++++++++++++++++++++----------------- tools |only 11 files changed, 55 insertions(+), 37 deletions(-)
Title: Easily Install and Load the 'Tidymodels' Packages
Description: The tidy modeling "verse" is a collection of packages for
modeling and statistical analysis that share the underlying design
philosophy, grammar, and data structures of the tidyverse.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph, fnd]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between tidymodels versions 0.0.2 dated 2018-11-27 and 0.0.3 dated 2019-10-04
DESCRIPTION | 30 +++++++++++++++--------------- MD5 | 10 +++++----- NAMESPACE | 3 +++ R/imports.R | 3 +++ man/tidymodels-package.Rd | 2 +- tests/testthat.R | 6 +++++- 6 files changed, 32 insertions(+), 22 deletions(-)
Title: Abstractions for Promise-Based Asynchronous Programming
Description: Provides fundamental abstractions for doing asynchronous programming
in R using promises. Asynchronous programming is useful for allowing a single
R process to orchestrate multiple tasks in the background while also attending
to something else. Semantics are similar to 'JavaScript' promises, but with a
syntax that is idiomatic R.
Author: Joe Cheng [aut, cre],
RStudio [cph, fnd]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between promises versions 1.0.1 dated 2018-04-13 and 1.1.0 dated 2019-10-04
DESCRIPTION | 8 MD5 | 65 ++- NEWS.md | 14 R/domains.R | 98 ++++- R/pipe.R | 2 R/promise.R | 46 +- R/utils.R | 4 README.md | 8 build/vignette.rds |binary inst/doc/casestudy.Rmd |only inst/doc/casestudy.html |only inst/doc/combining.html | 472 ++++++++++++++++++------ inst/doc/futures.Rmd | 2 inst/doc/futures.html | 324 ++++++++++++++-- inst/doc/intro.html | 406 ++++++++++++++++----- inst/doc/motivation.html | 184 +++++++++ inst/doc/overview.html | 536 +++++++++++++++++++-------- inst/doc/shiny.html | 636 ++++++++++++++++++++++----------- man/pipes.Rd | 2 man/promise_map.Rd | 3 man/reexports.Rd | 1 man/then.Rd | 4 man/with_promise_domain.Rd | 14 tests/testthat/common.R | 64 +++ tests/testthat/test-combining.R | 10 tests/testthat/test-domains.R |only tests/testthat/test-methods.R | 24 + vignettes/case-study-downloaders.png |only vignettes/case-study-gantt-aligned.png |only vignettes/case-study-gantt-async.png |only vignettes/case-study-gantt-async2.png |only vignettes/case-study-gantt1.png |only vignettes/case-study-gantt2.png |only vignettes/case-study-gantt3.png |only vignettes/case-study-react.png |only vignettes/case-study-tab1.png |only vignettes/case-study-tab2.png |only vignettes/case-study-tab3.png |only vignettes/case-study-tab4.png |only vignettes/case-study-tab5.png |only vignettes/casestudy.Rmd |only vignettes/futures.Rmd | 2 42 files changed, 2227 insertions(+), 702 deletions(-)
Title: Tools for HTML
Description: Tools for HTML generation and output.
Author: RStudio, Inc.
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between htmltools versions 0.3.6 dated 2017-04-28 and 0.4.0 dated 2019-10-04
DESCRIPTION | 16 - MD5 | 40 +-- NAMESPACE | 1 NEWS | 36 ++ R/RcppExports.R | 2 R/html_dependency.R | 8 R/html_escape.R | 2 R/html_print.R | 16 + R/shim.R |only R/tags.R | 472 ++++++++++++++++++++++----------------- R/utils.R |only man/builder.Rd | 65 +++-- man/htmlDependency.Rd | 4 man/tag.Rd | 14 - man/validateCssUnit.Rd | 8 src/RcppExports.cpp | 2 src/init.c | 4 tests/testthat/helper-locale.R |only tests/testthat/test-deps.r | 8 tests/testthat/test-print.R |only tests/testthat/test-tags.r | 152 +++++++++++- tests/testthat/test-template.R | 15 + tests/testthat/test-textwriter.r |only tests/testthat/test-whitespace.r |only 24 files changed, 598 insertions(+), 267 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 1.0.3 dated 2019-09-15 and 1.0.4 dated 2019-10-04
DESCRIPTION | 6 +-- MD5 | 20 ++++++------ NEWS.md | 6 +++ R/core_arrow.R | 53 ++++++++++++++++++++++++++++------ R/livy_connection.R | 2 - inst/java/sparklyr-1.5-2.10.jar |binary inst/java/sparklyr-1.6-2.10.jar |binary inst/java/sparklyr-2.0-2.11.jar |binary inst/java/sparklyr-2.3-2.11.jar |binary inst/livy/spark-1.6.0/sources.scala | 56 +++++++++++++++++++++++++++++------- java/spark-1.6.0/sources.scala | 53 ++++++++++++++++++++++++++++------ 11 files changed, 154 insertions(+), 42 deletions(-)
Title: Create Useful Summaries of the Portal Data
Description: Download and generate summaries for the rodent, plant, ant, and
weather data from the Portal Project. Portal is a long-term (and ongoing)
experimental monitoring site in the Chihuahua desert. The raw data files
can be found at <https://github.com/weecology/portaldata>.
Author: Glenda M. Yenni [aut, cre] (<https://orcid.org/0000-0001-6969-1848>),
Hao Ye [aut] (<https://orcid.org/0000-0002-8630-1458>),
Erica M. Christensen [aut] (<https://orcid.org/0000-0002-5635-2502>),
Juniper L. Simonis [aut] (<https://orcid.org/0000-0001-9798-0460>),
Ellen K. Bledsoe [aut] (<https://orcid.org/0000-0002-3629-7235>),
Renata M. Diaz [aut] (<https://orcid.org/0000-0003-0803-4734>),
Shawn D. Taylor [aut] (<https://orcid.org/0000-0002-6178-6903>),
Ethan P, White [aut] (<https://orcid.org/0000-0001-6728-7745>),
S.K. Morgan Ernest [aut] (<https://orcid.org/0000-0002-6026-8530>)
Maintainer: Glenda M. Yenni <glenda@weecology.org>
Diff between portalr versions 0.2.6 dated 2019-07-10 and 0.2.7 dated 2019-10-04
DESCRIPTION | 6 +-- MD5 | 18 +++++----- R/process_rodent_data.R | 2 - inst/doc/portal_researcher_examples.html | 42 ++++++++++++----------- inst/doc/rodent-abundance-demo.R | 2 - inst/doc/rodent-abundance-demo.Rmd | 2 - inst/doc/rodent-abundance-demo.html | 52 +++++++++++++++-------------- tests/testthat/test-03-summarize-rodents.R | 5 +- tests/testthat/test-99-regression.R | 4 +- vignettes/rodent-abundance-demo.Rmd | 2 - 10 files changed, 72 insertions(+), 63 deletions(-)
Title: Polynomial Spline Routines
Description: Routines for the polynomial spline fitting routines
hazard regression, hazard estimation with flexible tails, logspline,
lspec, polyclass, and polymars, by C. Kooperberg and co-authors.
Author: Charles Kooperberg <clk@fredhutch.org>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between polspline versions 1.1.15 dated 2019-06-13 and 1.1.16 dated 2019-10-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/polspline.R | 25 ++++++++++++++++++++++++- src/allpack.f | 2 -- src/lsdall.c | 26 ++++++++++++++++++++++---- 5 files changed, 54 insertions(+), 15 deletions(-)
Title: Estimating Through the Maximum Product Spacing Approach
Description: Developed for computing the probability density function, computing the cumulative distribution function, computing the quantile function, random generation, drawing q-q plot, and estimating the parameters of 24 G-family of statistical distributions via the maximum product spacing approach introduced in <https://www.jstor.org/stable/2345411>. The set of families contains: beta G distribution, beta exponential G distribution, beta extended G distribution, exponentiated G distribution, exponentiated exponential Poisson G distribution, exponentiated generalized G distribution, exponentiated Kumaraswamy G distribution, gamma type I G distribution, gamma type II G distribution, gamma uniform G distribution, gamma-X generated of log-logistic family of G distribution, gamma-X family of modified beta exponential G distribution, geometric exponential Poisson G distribution, generalized beta G distribution, generalized transmuted G distribution, Kumaraswamy G distribution, log gamma type I G distribution, log gamma type II G distribution, Marshall Olkin G distribution, Marshall Olkin Kumaraswamy G distribution, modified beta G distribution, odd log-logistic G distribution, truncated-exponential skew-symmetric G distribution, and Weibull G distribution.
Author: Mahdi Teimouri and Saralees Nadarajah
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between MPS versions 2.3.0 dated 2018-10-19 and 2.3.1 dated 2019-10-04
DESCRIPTION | 10 - MD5 | 56 +++--- NAMESPACE | 1 R/MPS.R | 457 +++++++++++++++++++++++++++++++++++++++++++++++++++++ man/MPS-package.Rd | 8 man/betaexpg.Rd | 14 - man/betag.Rd | 14 - man/expexppg.Rd | 14 - man/expg.Rd | 14 - man/expgg.Rd | 14 - man/expkumg.Rd | 14 - man/gammag.Rd | 14 - man/gammag1.Rd | 14 - man/gammag2.Rd | 14 - man/gbetag.Rd | 14 - man/gexppg.Rd | 14 - man/gmbetaexpg.Rd | 14 - man/gtransg.Rd | 14 - man/gxlogisticg.Rd | 14 - man/kumg.Rd | 14 - man/loggammag1.Rd | 14 - man/loggammag2.Rd | 14 - man/mbetag.Rd | 14 - man/mog.Rd | 14 - man/mokumg.Rd | 14 - man/ologlogg.Rd | 14 - man/texpsg.Rd | 14 - man/weibullextg.Rd | 14 - man/weibullg.Rd | 14 - 29 files changed, 687 insertions(+), 181 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.0-5 dated 2019-06-21 and 1.0-6 dated 2019-10-04
mlt-1.0-5/mlt/tests/Rplots.pdf |only mlt-1.0-6/mlt/DESCRIPTION | 8 ++--- mlt-1.0-6/mlt/MD5 | 19 +++++------ mlt-1.0-6/mlt/R/R.R | 1 mlt-1.0-6/mlt/R/methods.R | 2 - mlt-1.0-6/mlt/R/mlt.R | 56 ++++++++++++++++++++++++++--------- mlt-1.0-6/mlt/build/partial.rdb |binary mlt-1.0-6/mlt/inst/NEWS.Rd | 8 +++++ mlt-1.0-6/mlt/man/mlt-methods.Rd | 4 +- mlt-1.0-6/mlt/tests/Cox-Ex.R | 2 - mlt-1.0-6/mlt/tests/Cox-Ex.Rout.save | 6 +-- 11 files changed, 73 insertions(+), 33 deletions(-)
Title: Routines for Logspline Density Estimation
Description: Contains routines for logspline density estimation.
The function oldlogspline() uses the same algorithm as the logspline package
version 1.0.x; i.e. the Kooperberg and Stone (1992)
algorithm (with an improved interface). The recommended routine logspline()
uses an algorithm from Stone et al (1997) <DOI:10.1214/aos/1031594728>.
Author: Charles Kooperberg <clk@fredhutch.org>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between logspline versions 2.1.13 dated 2019-06-13 and 2.1.14 dated 2019-10-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/logspline.R | 22 ++++++++++++++++++++++ src/allpack.f | 17 ++++++++++------- src/lsdall.c | 26 ++++++++++++++++++++++---- 5 files changed, 62 insertions(+), 19 deletions(-)
Title: HTML Widgets for R
Description: A framework for creating HTML widgets that render in various
contexts including the R console, 'R Markdown' documents, and 'Shiny'
web applications.
Author: Ramnath Vaidyanathan [aut, cph],
Yihui Xie [aut],
JJ Allaire [aut],
Joe Cheng [aut, cre],
Kenton Russell [aut, cph],
RStudio [cph]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between htmlwidgets versions 1.3 dated 2018-09-30 and 1.5 dated 2019-10-04
DESCRIPTION | 8 ++--- MD5 | 25 +++++++++-------- R/htmlwidgets.R | 4 +- R/shim.R |only build/vignette.rds |binary inst/NEWS | 18 ++++++++++++ inst/doc/develop_advanced.R | 1 inst/doc/develop_advanced.html | 44 +++++++++++++++++++++++-------- inst/doc/develop_intro.html | 41 +++++++++++++++++++++------- inst/doc/develop_sizing.html | 41 +++++++++++++++++++++------- inst/www/htmlwidgets.js | 58 ++++++++++++++++++++++++++++++++++++++--- man/onRender.Rd | 4 +- man/saveWidget.Rd | 3 +- man/sizingPolicy.Rd | 7 ++-- 14 files changed, 196 insertions(+), 58 deletions(-)
Title: Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of several karyotypes having a set of dataframes for chromosome data
and optionally mark data. Includes also a function to plot holocentrics and its marks supporting
micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline
or to the right of karyotypes. It is possible to calculate
chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> ,
karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 1.5.1 dated 2019-09-27 and 1.6.1 dated 2019-10-04
idiogramFISH-1.5.1/idiogramFISH/R/plotIdiogramsHolo.R |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/groupsVig.R |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/groupsVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/groupsVig.html |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/humanVig.R |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/humanVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/humanVig.html |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/phylogenyVig.R |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/phylogenyVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/phylogenyVig.html |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/plotIdiogramsHoloVig.R |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/plotIdiogramsHoloVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/plotIdiogramsHoloVig.html |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/plotIdiogramsVig.R |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/plotIdiogramsVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/inst/doc/plotIdiogramsVig.html |only idiogramFISH-1.5.1/idiogramFISH/man/plotIdiogramsHolo.Rd |only idiogramFISH-1.5.1/idiogramFISH/vignettes/groupsVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/vignettes/humanVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/vignettes/link.svg |only idiogramFISH-1.5.1/idiogramFISH/vignettes/phylogenyVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/vignettes/plotIdiogramsHoloVig.Rmd |only idiogramFISH-1.5.1/idiogramFISH/vignettes/plotIdiogramsVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/DESCRIPTION | 10 idiogramFISH-1.6.1/idiogramFISH/MD5 | 132 idiogramFISH-1.6.1/idiogramFISH/NEWS.md | 6 idiogramFISH-1.6.1/idiogramFISH/R/asymmetry.R | 11 idiogramFISH-1.6.1/idiogramFISH/R/asymmetryA2.R | 10 idiogramFISH-1.6.1/idiogramFISH/R/checkNameChrDfMarks.R | 109 idiogramFISH-1.6.1/idiogramFISH/R/fixChrNameDup.R | 2 idiogramFISH-1.6.1/idiogramFISH/R/idiogramFISH-deprecated.R |only idiogramFISH-1.6.1/idiogramFISH/R/makedfMarkColor.R | 5 idiogramFISH-1.6.1/idiogramFISH/R/plotIdiograms.R | 2126 ++++++---- idiogramFISH-1.6.1/idiogramFISH/R/plotlabelsright.R | 18 idiogramFISH-1.6.1/idiogramFISH/R/roundPlot.R | 14 idiogramFISH-1.6.1/idiogramFISH/R/roundPlotMark.R | 18 idiogramFISH-1.6.1/idiogramFISH/README.md | 134 idiogramFISH-1.6.1/idiogramFISH/build/vignette.rds |binary idiogramFISH-1.6.1/idiogramFISH/data/allCenMarksSample.rda |binary idiogramFISH-1.6.1/idiogramFISH/data/allMarksSample.rda |binary idiogramFISH-1.6.1/idiogramFISH/data/mydfMaColor.rda |binary idiogramFISH-1.6.1/idiogramFISH/inst/doc/AplotIdiogramsVig.R |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/AplotIdiogramsVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/AplotIdiogramsVig.html |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/BplotIdiogramsHoloVig.R |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/BplotIdiogramsHoloVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/BplotIdiogramsHoloVig.html |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/CgroupsVig.R |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/CgroupsVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/CgroupsVig.html |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/DphylogenyVig.R |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/DphylogenyVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/DphylogenyVig.html |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/EhumanVig.R |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/EhumanVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/EhumanVig.html |only idiogramFISH-1.6.1/idiogramFISH/inst/doc/index.R | 83 idiogramFISH-1.6.1/idiogramFISH/inst/doc/index.Rmd | 124 idiogramFISH-1.6.1/idiogramFISH/inst/doc/index.html | 201 idiogramFISH-1.6.1/idiogramFISH/man/asymmetry.Rd | 11 idiogramFISH-1.6.1/idiogramFISH/man/asymmetryA2.Rd | 10 idiogramFISH-1.6.1/idiogramFISH/man/checkNameChrDfMarks.Rd | 12 idiogramFISH-1.6.1/idiogramFISH/man/figures/README-example-1.png |binary idiogramFISH-1.6.1/idiogramFISH/man/figures/README-example-1.svg |only idiogramFISH-1.6.1/idiogramFISH/man/figures/README-example2-1.png |binary idiogramFISH-1.6.1/idiogramFISH/man/figures/README-unnamed-chunk-9-1.png |only idiogramFISH-1.6.1/idiogramFISH/man/figures/crandownload.svg |only idiogramFISH-1.6.1/idiogramFISH/man/figures/cranversion.svg |only idiogramFISH-1.6.1/idiogramFISH/man/figures/donate.svg |only idiogramFISH-1.6.1/idiogramFISH/man/figures/donateweek.svg |only idiogramFISH-1.6.1/idiogramFISH/man/figures/gitbadge.svg |only idiogramFISH-1.6.1/idiogramFISH/man/figures/link.svg |only idiogramFISH-1.6.1/idiogramFISH/man/figures/logo.svg |only idiogramFISH-1.6.1/idiogramFISH/man/idiogramFISH-deprecated.Rd |only idiogramFISH-1.6.1/idiogramFISH/man/makedfMarkColor.Rd | 4 idiogramFISH-1.6.1/idiogramFISH/man/plotIdiograms.Rd | 127 idiogramFISH-1.6.1/idiogramFISH/man/plotlabelsright.Rd | 7 idiogramFISH-1.6.1/idiogramFISH/man/roundPlotMark.Rd | 10 idiogramFISH-1.6.1/idiogramFISH/vignettes/.install_extras |only idiogramFISH-1.6.1/idiogramFISH/vignettes/AplotIdiogramsVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/vignettes/BplotIdiogramsHoloVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/vignettes/CgroupsVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/vignettes/DphylogenyVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/vignettes/EhumanVig.Rmd |only idiogramFISH-1.6.1/idiogramFISH/vignettes/bigdfChrSizeHolo |only idiogramFISH-1.6.1/idiogramFISH/vignettes/bigdfChrSizeHolo2 |only idiogramFISH-1.6.1/idiogramFISH/vignettes/dfChrSizeHolo.png |only idiogramFISH-1.6.1/idiogramFISH/vignettes/dfOfChrSize.png |only idiogramFISH-1.6.1/idiogramFISH/vignettes/firstplot.svg |only idiogramFISH-1.6.1/idiogramFISH/vignettes/firstplot2.png |binary idiogramFISH-1.6.1/idiogramFISH/vignettes/fonts/fa-regular-400.svg | 765 --- idiogramFISH-1.6.1/idiogramFISH/vignettes/index.Rmd | 124 idiogramFISH-1.6.1/idiogramFISH/vignettes/jquery.min.jsAll |only idiogramFISH-1.6.1/idiogramFISH/vignettes/mydfChrSize.png |only idiogramFISH-1.6.1/idiogramFISH/vignettes/mydfChrSizeHolo.png |only idiogramFISH-1.6.1/idiogramFISH/vignettes/mystyle.css | 10 idiogramFISH-1.6.1/idiogramFISH/vignettes/packages.bib | 44 idiogramFISH-1.6.1/idiogramFISH/vignettes/secondplot.jpg |only idiogramFISH-1.6.1/idiogramFISH/vignettes/secondplot2.png |binary idiogramFISH-1.6.1/idiogramFISH/vignettes/thirdplot2.png |only 100 files changed, 2298 insertions(+), 1829 deletions(-)
Title: Process and Analyze Mouse-Tracking Data
Description: Mouse-tracking, the analysis of mouse movements in computerized
experiments, is a method that is becoming increasingly popular in the
cognitive sciences. The mousetrap package offers functions for importing,
preprocessing, analyzing, aggregating, and visualizing mouse-tracking data.
Author: Pascal J. Kieslich [aut, cre] (<https://orcid.org/0000-0002-0853-9364>),
Dirk U. Wulff [aut] (<https://orcid.org/0000-0002-4008-8022>),
Felix Henninger [aut] (<https://orcid.org/0000-0002-7730-9511>),
Jonas M. B. Haslbeck [aut],
Sarah Brockhaus [ctb]
Maintainer: Pascal J. Kieslich <kieslich@psychologie.uni-mannheim.de>
Diff between mousetrap versions 3.1.2 dated 2019-02-02 and 3.1.3 dated 2019-10-04
DESCRIPTION | 8 - MD5 | 44 +++--- NEWS.md | 20 +- R/RcppExports.R | 342 +++++++++++++++++++++++------------------------ R/cluster.R | 4 R/cluster_k.R | 8 - R/heatmap.R | 40 ++--- R/map.R | 4 R/measures.R | 6 R/preprocess.R | 9 + R/sample_entropy.R | 33 +++- R/startupmessage.R | 2 README.md | 13 - inst/CITATION | 7 man/mt_cluster.Rd | 4 man/mt_cluster_k.Rd | 8 - man/mt_diffmap.Rd | 10 - man/mt_heatmap.Rd | 10 - man/mt_heatmap_ggplot.Rd | 10 - man/mt_heatmap_raw.Rd | 10 - man/mt_map.Rd | 4 man/mt_measures.Rd | 6 man/mt_sample_entropy.Rd | 10 + 23 files changed, 330 insertions(+), 282 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre]
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between fixest versions 0.1.1 dated 2019-09-20 and 0.1.2 dated 2019-10-04
DESCRIPTION | 6 MD5 | 8 R/MiscFuns.R | 3 inst/NEWS.Rd | 12 inst/doc/fixest_walkthrough.html | 1094 +++++++++++++++++++-------------------- 5 files changed, 565 insertions(+), 558 deletions(-)
Title: Rolling Statistics
Description: Fast and efficient computation of rolling statistics for time-series data.
Author: Jason Foster
Maintainer: Jason Foster <jason.j.foster@gmail.com>
Diff between roll versions 1.1.2 dated 2019-02-06 and 1.1.3 dated 2019-10-04
roll-1.1.2/roll/src/roll.h |only roll-1.1.3/roll/DESCRIPTION | 9 roll-1.1.3/roll/MD5 | 57 roll-1.1.3/roll/NAMESPACE | 2 roll-1.1.3/roll/NEWS.md | 9 roll-1.1.3/roll/R/RcppExports.R | 8 roll-1.1.3/roll/R/roll.R | 182 +- roll-1.1.3/roll/README.md | 4 roll-1.1.3/roll/build/partial.rdb |binary roll-1.1.3/roll/man/roll_all.Rd | 4 roll-1.1.3/roll/man/roll_any.Rd | 4 roll-1.1.3/roll/man/roll_cor.Rd | 6 roll-1.1.3/roll/man/roll_cov.Rd | 6 roll-1.1.3/roll/man/roll_idxmax.Rd |only roll-1.1.3/roll/man/roll_idxmin.Rd |only roll-1.1.3/roll/man/roll_lm.Rd | 6 roll-1.1.3/roll/man/roll_max.Rd | 6 roll-1.1.3/roll/man/roll_mean.Rd | 4 roll-1.1.3/roll/man/roll_median.Rd | 4 roll-1.1.3/roll/man/roll_min.Rd | 6 roll-1.1.3/roll/man/roll_prod.Rd | 4 roll-1.1.3/roll/man/roll_scale.Rd | 4 roll-1.1.3/roll/man/roll_sd.Rd | 4 roll-1.1.3/roll/man/roll_sum.Rd | 4 roll-1.1.3/roll/man/roll_var.Rd | 4 roll-1.1.3/roll/src/RcppExports.cpp | 90 - roll-1.1.3/roll/src/init.c | 8 roll-1.1.3/roll/src/roll.cpp | 3236 ++++++++++++++++++++++++++---------- roll-1.1.3/roll/src/roll_mat.h |only roll-1.1.3/roll/src/roll_vec.h |only roll-1.1.3/roll/tests |only 31 files changed, 2685 insertions(+), 986 deletions(-)
Title: Distributions for Generalized Additive Models for Location Scale
and Shape
Description: A set of distributions which can be used for modelling the response variables in Generalized Additive Models for Location Scale and Shape, Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The distributions can be continuous, discrete or mixed distributions. Extra distributions can be created, by transforming, any continuous distribution defined on the real line, to a distribution defined on ranges 0 to infinity or 0 to 1, by using a ''log'' or a ''logit' transformation respectively.
Author: Mikis Stasinopoulos [aut, cre, cph],
Robert Rigby [aut],
Calliope Akantziliotou [ctb],
Vlasios Voudouris [ctb],
Gillian Heller [ctb],
Fernanda De Bastiani [ctb],
Raydonal Ospina [ctb],
Nicoletta Motpan [ctb],
Fiona McElduff [ctb],
Majid Djennad [ctb],
Marco Enea [ctb],
Alexios Ghalanos [ctb],
Christos Argyropoulos [ctb],
Almond Stocker [ctb],
Jens Lichter [ctb],
Stanislaus Stadlmann [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.dist versions 5.1-4 dated 2019-05-15 and 5.1-5 dated 2019-10-04
DESCRIPTION | 8 +- MD5 | 151 ++++++++++++++++++++++----------------------- R/PIG2.R |only R/SICHEL-10-09-12.R | 4 - build/partial.rdb |binary man/BB.Rd | 7 +- man/BCCG.Rd | 7 +- man/BCPE.Rd | 5 - man/BCt.Rd | 7 +- man/BE.Rd | 5 + man/BEINF.Rd | 5 - man/BEOI.Rd | 7 -- man/BEZI.Rd | 7 -- man/BI.Rd | 5 - man/BNB.Rd | 7 +- man/DEL.Rd | 9 -- man/EGB2.Rd | 6 - man/EXP.Rd | 6 - man/GA.Rd | 6 - man/GB1.Rd | 6 - man/GB2.Rd | 6 - man/GEOM.Rd | 5 + man/GG.Rd | 4 - man/GIG.Rd | 6 - man/GPO.Rd | 5 + man/GT.Rd | 6 - man/GU.rd | 6 - man/IG.Rd | 4 - man/IGAMMA.Rd | 3 man/JSU.Rd | 5 + man/JSUoriginal.Rd | 6 - man/LG.Rd | 9 +- man/LNO.Rd | 4 - man/LOGISTIC.Rd | 6 - man/LOGITNO.Rd | 4 - man/Multinomial.Rd | 4 - man/NBF.Rd | 5 + man/NBI.Rd | 7 +- man/NBII.Rd | 7 +- man/NET.Rd | 5 + man/NO.Rd | 4 - man/NO2.Rd | 4 - man/NOF.Rd | 5 + man/PARETO2.Rd | 4 - man/PE.Rd | 6 - man/PIG.Rd | 34 ++++++++-- man/PO.Rd | 7 +- man/RG.Rd | 6 - man/RGE.Rd | 6 - man/SEP.Rd | 6 - man/SEP1.Rd | 6 - man/SHASH.Rd | 6 - man/SI.Rd | 4 - man/SICHEL.Rd | 5 + man/SN1.Rd | 4 - man/SN2.Rd | 4 - man/ST1.Rd | 5 - man/TF.Rd | 6 - man/WEI.Rd | 8 +- man/WEI2.Rd | 6 - man/WEI3.Rd | 6 - man/ZABB.Rd | 11 +-- man/ZABI.Rd | 6 - man/ZAGA.Rd | 5 + man/ZAIG.Rd | 6 + man/ZANBI.Rd | 10 +- man/ZAP.Rd | 8 -- man/ZIP.Rd | 7 +- man/ZIP2.Rd | 5 - man/checklink.Rd | 4 - man/exGAUS.Rd | 4 - man/gamlss.dist-package.Rd | 2 man/gamlss.family.Rd | 7 +- man/gen.Family.Rd | 6 - man/hazardFun.Rd | 6 - man/make.link.gamlss.Rd | 5 - man/momentSK.Rd | 3 77 files changed, 333 insertions(+), 269 deletions(-)
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
and cache management.
Author: Jonathan Callahan [aut, cre],
Spencer Pease [aut],
Thomas Bergamaschi [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.3.5 dated 2019-09-10 and 0.3.9 dated 2019-10-04
DESCRIPTION | 10 - MD5 | 74 ++++++++------ NAMESPACE | 8 + NEWS.md | 31 ++++++ R/MazamaCoreUtils.R | 32 ------ R/dateRange.R | 52 +++++++--- R/devtools_check.R |only R/errorHandling.R | 2 R/functionArgument_lintRules.R |only R/initializeLogging.R | 4 R/parseDatetime.R | 54 ++++++++-- R/pylogger.R | 182 ++++++++++++++++++++++++------------ README.md | 2 inst/doc/cache-management.html | 6 - inst/doc/date-parsing.Rmd | 2 inst/doc/date-parsing.html | 6 - inst/doc/error-handling.Rmd | 2 inst/doc/error-handling.html | 18 ++- inst/doc/logging.Rmd | 4 inst/doc/logging.html | 42 ++++---- man/check.Rd |only man/check_fast.Rd |only man/check_faster.Rd |only man/check_fastest.Rd |only man/check_slow.Rd |only man/check_slower.Rd |only man/check_slowest.Rd |only man/dateRange.Rd | 66 ++++++++++++- man/logger.debug.Rd | 18 ++- man/logger.error.Rd | 18 ++- man/logger.fatal.Rd | 18 ++- man/logger.info.Rd | 18 ++- man/logger.isInitialized.Rd |only man/logger.setup.Rd | 18 ++- man/logger.trace.Rd | 18 ++- man/logger.warn.Rd | 18 ++- man/parseDatetime.Rd | 15 +- man/timezoneLintRules.Rd | 2 tests/testthat/test-dateRange.R | 53 ++++++++++ tests/testthat/test-parseDatetime.R | 16 +++ vignettes/date-parsing.Rmd | 2 vignettes/error-handling.Rmd | 2 vignettes/logging.Rmd | 4 43 files changed, 571 insertions(+), 246 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Title: Quick Serialization of R Objects
Description: Provides functions for quickly writing and reading any R object to and from disk.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled zstd
and lz4 code),
Facebook, Inc. [cph] (Facebook is the copyright holder of the bundled
zstd code),
Reichardt Tino [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of zstd
bundled code),
Mori Yuta [ctb, cph] (Contributor/copyright holder of zstd bundled
code),
Romain Francois [ctb, cph] (Derived example/tutorials for Alt-Rep
structures),
Francesc Alted [ctb, cph] (Shuffling routines derived from Blosc
library)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs versions 0.18.3 dated 2019-08-21 and 0.19.1 dated 2019-10-04
qs-0.18.3/qs/src/BLOSC/LICENSE |only qs-0.18.3/qs/src/LZ4/LICENSE |only qs-0.18.3/qs/src/ZSTD/COPYING |only qs-0.18.3/qs/src/ZSTD/LICENSE |only qs-0.19.1/qs/ChangeLog | 17 qs-0.19.1/qs/DESCRIPTION | 8 qs-0.19.1/qs/MD5 | 60 - qs-0.19.1/qs/R/RcppExports.R | 12 qs-0.19.1/qs/R/help_files.R | 30 qs-0.19.1/qs/R/zzz.R | 5 qs-0.19.1/qs/README.md | 50 + qs-0.19.1/qs/inst/doc/vignette.R | 16 qs-0.19.1/qs/inst/doc/vignette.html | 49 + qs-0.19.1/qs/inst/doc/vignette.rmd | 47 + qs-0.19.1/qs/inst/include |only qs-0.19.1/qs/man/qsave.Rd | 4 qs-0.19.1/qs/man/qsave_fd.Rd | 4 qs-0.19.1/qs/man/qsave_handle.Rd | 4 qs-0.19.1/qs/man/qserialize.Rd | 6 qs-0.19.1/qs/src/BLOSC/LICENSE.txt |only qs-0.19.1/qs/src/BLOSC/shuffle_routines.h | 2 qs-0.19.1/qs/src/BLOSC/unshuffle_routines.h | 54 - qs-0.19.1/qs/src/LZ4/LICENSE.txt |only qs-0.19.1/qs/src/RcppExports.cpp | 1167 ++++++++++++++++++++++----- qs-0.19.1/qs/src/ZSTD/COPYING.txt |only qs-0.19.1/qs/src/ZSTD/LICENSE.txt |only qs-0.19.1/qs/src/qs_common.h | 863 ++++++++----------- qs-0.19.1/qs/src/qs_deserialization.h | 55 - qs-0.19.1/qs/src/qs_deserialization_stream.h | 143 +-- qs-0.19.1/qs/src/qs_functions.cpp | 159 ++- qs-0.19.1/qs/src/qs_mt_deserialization.h | 80 - qs-0.19.1/qs/src/qs_mt_serialization.h | 118 +- qs-0.19.1/qs/src/qs_serialization.h | 97 +- qs-0.19.1/qs/src/qs_serialization_stream.h | 102 +- qs-0.19.1/qs/vignettes/vignette.rmd | 47 + 35 files changed, 2053 insertions(+), 1146 deletions(-)
Title: Sparse PArtial Correlation Estimation
Description: Partial correlation estimation with joint sparse
regression model.
Author: Jie Peng <jie@wald.ucdavis.edu> , Pei Wang <pwang@fhcrc.org>,
Nengfeng Zhou <nfzhou@umich.edu>, Ji Zhu <jizhu@umich.edu>.
Maintainer: Pei Wang <pwang@fhcrc.org>
Diff between space versions 0.1-1 dated 2008-03-12 and 0.1-1.1 dated 2019-10-04
DESCRIPTION | 18 ++++++++++++------ MD5 |only NAMESPACE | 1 + data/datalist |only data/spaceSimu.rda |binary man/space.joint.Rd | 4 ++-- man/spaceSimu.Rd | 4 ++-- 7 files changed, 17 insertions(+), 10 deletions(-)
Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities,
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 1.1.2 dated 2019-09-12 and 1.2.0 dated 2019-10-04
DESCRIPTION | 13 ++++---- MD5 | 24 ++++++++------ NAMESPACE | 5 +++ NEWS.md | 4 ++ R/DistributionPlot.R | 66 +++++++++++++++++++++++++++++++---------- R/PlotDistCountBinomial.R |only R/ScatterHistC.R | 6 +++ R/rqdatatable_imports.R |only R/zzz.R |only README.md | 19 ++++++----- inst/doc/WVPlots_concept.html | 4 +- inst/doc/WVPlots_examples.html | 4 +- man/PlotDistCountBinomial.Rd |only man/PlotDistDensityBeta.Rd | 24 +++++++++++--- man/PlotDistHistBeta.Rd | 28 ++++++++++++----- 15 files changed, 140 insertions(+), 57 deletions(-)
Title: World Population Prospects 2019
Description: Provides data from the United Nation's World Population Prospects 2019.
Author: United Nations Population Division
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between wpp2019 versions 1.0-0 dated 2019-06-25 and 1.1-0 dated 2019-10-04
ChangeLog | 5 DESCRIPTION | 8 MD5 | 30 - data/migration.txt | 51 +- data/popFprojHigh.txt | 651 +++++++++++++----------------- data/popFprojLow.txt | 747 +++++++++++++++------------------- data/popFprojMed.txt | 1071 +++++++++++++++++++++++++------------------------- data/popMprojHigh.txt | 651 +++++++++++++----------------- data/popMprojLow.txt | 795 +++++++++++++++++-------------------- data/popMprojMed.txt | 1071 +++++++++++++++++++++++++------------------------- data/popproj80l.txt | 497 +++++++++++------------ data/popproj80u.txt | 497 +++++++++++------------ data/popproj95l.txt | 497 +++++++++++------------ data/popproj95u.txt | 497 +++++++++++------------ data/popprojHigh.txt | 499 +++++++++++------------ data/popprojLow.txt | 499 +++++++++++------------ 16 files changed, 3926 insertions(+), 4140 deletions(-)
Title: Statistical Framework to Define Subgroups in Complex Datasets
Description: High-dimensional datasets that do not exhibit a clear intrinsic clustered structure pose a challenge to conventional clustering algorithms. For this reason, we developed an unsupervised framework that helps scientists to better subgroup their datasets based on visual cues, please see Gao S, Mutter S, Casey A, Makinen V-P (2019) Numero: a statistical framework to define multivariable subgroups in complex population-based datasets, Int J Epidemiology, 48:369-37, <doi:10.1093/ije/dyy113>. The framework includes the necessary functions to construct a self-organizing map of the data, to evaluate the statistical significance of the observed data patterns, and to visualize the results.
Author: Song Gao [aut],
Stefan Mutter [aut],
Aaron E. Casey [aut],
Ville-Petteri Makinen [aut, cre]
Maintainer: Ville-Petteri Makinen <vpmakine@gmail.com>
Diff between Numero versions 1.3.1 dated 2019-09-16 and 1.3.2 dated 2019-10-04
Numero-1.3.1/Numero/src/koho.transformation.cpp |only Numero-1.3.2/Numero/DESCRIPTION | 8 Numero-1.3.2/Numero/MD5 | 97 +- Numero-1.3.2/Numero/R/nroAggregate.R | 35 Numero-1.3.2/Numero/R/nroColorize.R | 26 Numero-1.3.2/Numero/R/nroImpute.R | 15 Numero-1.3.2/Numero/R/nroKmeans.R | 75 - Numero-1.3.2/Numero/R/nroLabel.R | 16 Numero-1.3.2/Numero/R/nroPermute.R | 29 Numero-1.3.2/Numero/R/nroPlot.save.R | 803 +++++++++--------- Numero-1.3.2/Numero/R/nroRcppMatrix.R | 2 Numero-1.3.2/Numero/R/nroSummary.R | 608 ++++++------- Numero-1.3.2/Numero/R/nroTrain.R | 25 Numero-1.3.2/Numero/R/numero.create.R | 13 Numero-1.3.2/Numero/R/numero.evaluate.R | 43 Numero-1.3.2/Numero/R/numero.plot.R | 2 Numero-1.3.2/Numero/R/numero.prepare.R | 32 Numero-1.3.2/Numero/R/numero.quality.R | 16 Numero-1.3.2/Numero/build/vignette.rds |binary Numero-1.3.2/Numero/inst/doc/intro.R | 31 Numero-1.3.2/Numero/inst/doc/intro.html | 360 ++++---- Numero-1.3.2/Numero/inst/doc/intro.rmd | 43 Numero-1.3.2/Numero/inst/extcode/examples.R | 35 Numero-1.3.2/Numero/man/nroAggregate.Rd | 4 Numero-1.3.2/Numero/man/nroColorize.Rd | 13 Numero-1.3.2/Numero/man/nroKmeans.Rd | 14 Numero-1.3.2/Numero/man/nroLabel.Rd | 2 Numero-1.3.2/Numero/man/nroPermute.Rd | 18 Numero-1.3.2/Numero/man/nroPlot.Rd | 4 Numero-1.3.2/Numero/man/nroSummary.Rd | 9 Numero-1.3.2/Numero/man/nroTrain.Rd | 21 Numero-1.3.2/Numero/man/numero.create.Rd | 2 Numero-1.3.2/Numero/man/numero.evaluate.Rd | 17 Numero-1.3.2/Numero/man/numero.summary.Rd | 2 Numero-1.3.2/Numero/src/koho.engine.average.cpp | 11 Numero-1.3.2/Numero/src/koho.engine.histograms.cpp | 2 Numero-1.3.2/Numero/src/koho.engine.insert.cpp | 6 Numero-1.3.2/Numero/src/koho.enginebuffer.prepare.cpp | 16 Numero-1.3.2/Numero/src/koho.h | 6 Numero-1.3.2/Numero/src/koho.local.h | 41 Numero-1.3.2/Numero/src/koho.model.insert.cpp | 2 Numero-1.3.2/Numero/src/koho.point.cpp | 11 Numero-1.3.2/Numero/src/koho.trainer.match.cpp | 2 Numero-1.3.2/Numero/src/nro_circus_paint.cpp | 2 Numero-1.3.2/Numero/src/nro_diffuse.cpp | 2 Numero-1.3.2/Numero/src/nro_permute.cpp | 3 Numero-1.3.2/Numero/src/punos.local.h | 4 Numero-1.3.2/Numero/src/scriptum.color.cpp | 12 Numero-1.3.2/Numero/src/scriptum.framebuffer.cpp | 2 Numero-1.3.2/Numero/vignettes/intro.rmd | 43 50 files changed, 1324 insertions(+), 1261 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Craig Citro [aut],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Google Inc [cph],
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between gargle versions 0.3.1 dated 2019-07-26 and 0.4.0 dated 2019-10-04
DESCRIPTION | 8 MD5 | 86 +++++---- NEWS.md | 12 + R/Gargle-class.R | 21 +- R/credentials_gce.R | 3 R/credentials_service_account.R | 9 + R/gargle-package.R | 19 +- R/oauth-cache.R | 114 +++++++------ R/response_process.R | 2 R/roxygen-templates.R | 11 + R/utils.R | 11 - build/vignette.rds |binary inst/doc/auth-from-web.R |only inst/doc/auth-from-web.Rmd |only inst/doc/auth-from-web.html |only inst/doc/gargle-auth-in-client-package.Rmd | 2 inst/doc/gargle-auth-in-client-package.html | 2 inst/doc/how-gargle-gets-tokens.R | 10 - inst/doc/how-gargle-gets-tokens.Rmd | 12 - inst/doc/how-gargle-gets-tokens.html | 18 +- inst/doc/non-interactive-auth.R | 101 +++++++++-- inst/doc/non-interactive-auth.Rmd | 210 +++++++++++++++++++----- inst/doc/non-interactive-auth.html | 187 +++++++++++++++------ man/Gargle-class.Rd | 22 +- man/credentials_gce.Rd | 4 man/gargle_options.Rd | 14 - tests/testthat/helper.R | 2 tests/testthat/test-aaa.R | 2 tests/testthat/test-assets.R | 18 +- tests/testthat/test-authstate-class.R | 2 tests/testthat/test-credentials-byo-auth2.R | 9 - tests/testthat/test-fetch.R | 2 tests/testthat/test-gce-token.R | 2 tests/testthat/test-oauth-app.R | 2 tests/testthat/test-oauth-cache.R | 139 ++++++++------- tests/testthat/test-oauth-token.R | 2 tests/testthat/test-registry.R | 2 tests/testthat/test-request-develop.R | 2 tests/testthat/test-request-make.R | 2 tests/testthat/test-response-process.R | 2 tests/testthat/test-utils.R | 9 - vignettes/articles/managing-tokens-securely.Rmd | 2 vignettes/auth-from-web.Rmd |only vignettes/gargle-auth-in-client-package.Rmd | 2 vignettes/how-gargle-gets-tokens.Rmd | 12 - vignettes/non-interactive-auth.Rmd | 210 +++++++++++++++++++----- 46 files changed, 887 insertions(+), 414 deletions(-)
Title: Utilities for Scheduling Functions to Execute Later with Event
Loops
Description: Executes arbitrary R or C functions some time after the current
time, after the R execution stack has emptied. The functions are scheduled
in an event loop.
Author: Joe Cheng [aut, cre],
RStudio [cph],
Winston Chang [aut],
Marcus Geelnard [ctb, cph] (TinyCThread library,
https://tinycthread.github.io/),
Evan Nemerson [ctb, cph] (TinyCThread library,
https://tinycthread.github.io/)
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between later versions 0.8.0 dated 2019-02-11 and 1.0.0 dated 2019-10-04
later-0.8.0/later/src/later_native.cpp |only later-1.0.0/later/DESCRIPTION | 14 later-1.0.0/later/LICENSE.note | 7 later-1.0.0/later/MD5 | 71 +- later-1.0.0/later/NAMESPACE | 9 later-1.0.0/later/NEWS.md | 4 later-1.0.0/later/R/RcppExports.R | 47 + later-1.0.0/later/R/debug.R |only later-1.0.0/later/R/later.R | 220 ++++++- later-1.0.0/later/README.md | 4 later-1.0.0/later/build/vignette.rds |binary later-1.0.0/later/inst/doc/later-cpp.html | 555 +++++++----------- later-1.0.0/later/inst/include/later.h | 78 ++ later-1.0.0/later/man/create_loop.Rd |only later-1.0.0/later/man/later.Rd | 12 later-1.0.0/later/man/list_queue.Rd |only later-1.0.0/later/man/logLevel.Rd |only later-1.0.0/later/man/loop_empty.Rd | 5 later-1.0.0/later/man/next_op_secs.Rd | 7 later-1.0.0/later/man/run_now.Rd | 4 later-1.0.0/later/src/Makevars | 3 later-1.0.0/later/src/Makevars.win |only later-1.0.0/later/src/RcppExports.cpp | 100 ++- later-1.0.0/later/src/callback_registry.cpp | 277 ++++++++ later-1.0.0/later/src/callback_registry.h | 104 ++- later-1.0.0/later/src/debug.cpp |only later-1.0.0/later/src/debug.h | 38 + later-1.0.0/later/src/init.c | 59 + later-1.0.0/later/src/later.cpp | 204 +++++- later-1.0.0/later/src/later.h | 23 later-1.0.0/later/src/later_posix.cpp | 49 - later-1.0.0/later/src/later_win32.cpp | 40 - later-1.0.0/later/src/timeconv.h | 5 later-1.0.0/later/src/timer_posix.cpp | 52 - later-1.0.0/later/src/timer_posix.h | 12 later-1.0.0/later/src/tinycthread.c | 10 later-1.0.0/later/src/tinycthread.h | 14 later-1.0.0/later/src/utils.h |only later-1.0.0/later/tests/testthat/test-c-api.R |only later-1.0.0/later/tests/testthat/test-cancel.R |only later-1.0.0/later/tests/testthat/test-private-loops.R |only later-1.0.0/later/tests/testthat/test-run_now.R | 212 ++++++ 42 files changed, 1613 insertions(+), 626 deletions(-)