Mon, 21 Oct 2019

Package paws updated to version 0.1.5 with previous version 0.1.4 dated 2019-08-22

Title: Amazon Web Services Software Development Kit
Description: Interface to Amazon Web Services <https://aws.amazon.com>, including storage, database, and compute services, such as 'Simple Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda' functions-as-a-service.
Author: David Kretch [aut, cre], Adam Banker [aut], Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>

Diff between paws versions 0.1.4 dated 2019-08-22 and 0.1.5 dated 2019-10-21

 DESCRIPTION                            |   26 
 MD5                                    |  270 +-
 NEWS.md                                |    5 
 R/paws.R                               | 3432 ++++++++++++++++++++++++++++++---
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Package pomp updated to version 2.4 with previous version 2.3 dated 2019-09-05

Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre], Edward L. Ionides [aut], Carles Breto [aut], Stephen P. Ellner [ctb], Matthew J. Ferrari [ctb], Bruce E. Kendall [ctb], Michael Lavine [ctb], Dao Nguyen [ctb], Daniel C. Reuman [ctb], Helen Wearing [ctb], Simon N. Wood [ctb], Sebastian Funk [ctb], Steven G. Johnson [ctb], Eamon O'Dea [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>

Diff between pomp versions 2.3 dated 2019-09-05 and 2.4 dated 2019-10-21

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 42 files changed, 753 insertions(+), 579 deletions(-)

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Package performance updated to version 0.4.0 with previous version 0.3.0 dated 2019-08-05

Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality, which are not directly provided by R's 'base' or 'stats' packages. These include e.g. measures like r-squared, intraclass correlation coefficient (Nakagawa, Johnson & Schielzeth (2017) <doi:10.1098/rsif.2017.0213>), root mean squared error or functions to check models for overdispersion, singularity or zero-inflation and more. Functions apply to a large variety of regression models, including generalized linear models, mixed effects models and Bayesian models.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>), Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>), Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between performance versions 0.3.0 dated 2019-08-05 and 0.4.0 dated 2019-10-21

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Package gradeR updated to version 1.0.4 with previous version 1.0.3 dated 2019-10-02

Title: Helps Grade Assignment Submissions that are R Scripts
Description: After being given the location of your students' submissions and a test file, the function runs each .R file, and evaluates the results from all the given tests. Results are neatly returned in a data frame that has a row for each student, and a column for each test.
Author: Taylor Brown [aut, cre]
Maintainer: Taylor Brown <trb5me@virginia.edu>

Diff between gradeR versions 1.0.3 dated 2019-10-02 and 1.0.4 dated 2019-10-21

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Package spray updated to version 1.0-8 with previous version 1.0-7 dated 2019-09-02

Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>

Diff between spray versions 1.0-7 dated 2019-09-02 and 1.0-8 dated 2019-10-21

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Package packageRank updated to version 0.3.0 with previous version 0.2.0 dated 2019-07-11

Title: Computation and Visualization of Package Download Counts and Percentiles
Description: Compute and visualize the cross-sectional and longitudinal number and rank percentile of package downloads from RStudio's CRAN mirror.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>

Diff between packageRank versions 0.2.0 dated 2019-07-11 and 0.3.0 dated 2019-10-21

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Package LogicReg (with last version 1.5.12) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-06-18 1.5.12
2018-06-14 1.5.10
2016-08-30 1.5.9
2015-07-02 1.5.8
2015-01-23 1.5.6
2013-12-03 1.5.5
2013-04-26 1.5.4
2012-07-23 1.5.3
2012-06-13 1.5.2
2012-03-27 1.5.1
2012-02-20 1.4.14
2012-02-17 1.4.13
2012-02-14 1.4.12
2011-10-13 1.4.11
2011-04-23 1.4.10
2010-01-12 1.4.9
2008-10-10 1.4.8
2007-10-07 1.4.7
2007-10-03 1.4.6
2007-10-02 1.4.5
2007-09-30 1.4.4
2006-11-16 1.4.3

Permanent link
Package solrium updated to version 1.1.0 with previous version 1.0.2 dated 2018-12-13

Title: General Purpose R Interface to 'Solr'
Description: Provides a set of functions for querying and parsing data from 'Solr' (<https://lucene.apache.org/solr>) 'endpoints' (local and remote), including search, 'faceting', 'highlighting', 'stats', and 'more like this'. In addition, some functionality is included for creating, deleting, and updating documents in a 'Solr' 'database'.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between solrium versions 1.0.2 dated 2018-12-13 and 1.1.0 dated 2019-10-21

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 MD5                                  |  154 +++++++++++-----------
 NAMESPACE                            |    2 
 NEWS.md                              |   14 ++
 R/add.R                              |   30 ++--
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More information about solrium at CRAN
Permanent link

New package MoTBFs with initial version 1.1
Package: MoTBFs
Type: Package
Title: Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions
Version: 1.1
Author: Inmaculada Pérez-Bernabé, Antonio Salmerón, Thomas D. Nielsen, Ana D. Maldonado
Maintainer: Ana D. Maldonado <ana.d.maldonado@ual.es>
Description: Learning, manipulation and evaluation of mixtures of truncated basis functions (MoTBFs), which include mixtures of polynomials (MOPs) and mixtures of truncated exponentials (MTEs). MoTBFs are a flexible framework for modelling hybrid Bayesian networks (I. Pérez-Bernabé, A. Salmerón, H. Langseth (2015) <doi:10.1007/978-3-319-20807-7_36>; H. Langseth, T.D. Nielsen, I. Pérez-Bernabé, A. Salmerón (2014) <doi:10.1016/j.ijar.2013.09.012>; I. Pérez-Bernabé, A. Fernández, R. Rumí, A. Salmerón (2016) <doi:10.1007/s10618-015-0429-7>). The package provides functionality for learning univariate, multivariate and conditional densities, with the possibility of incorporating prior knowledge. Structural learning of hybrid Bayesian networks is also provided. A set of useful tools is provided, including plotting, printing and likelihood evaluation. This package makes use of S3 objects, with two new classes called 'motbf' and 'jointmotbf'.
Depends: R (>= 3.2.0)
Imports: quadprog, lpSolve, bnlearn, methods, ggm
Encoding: UTF-8
License: LGPL-3
NeedsCompilation: yes
Repository: CRAN
Packaged: 2019-10-21 17:41:07 UTC; amg
Date/Publication: 2019-10-21 18:20:02 UTC
RoxygenNote: 6.1.99.9001

More information about MoTBFs at CRAN
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Package varhandle updated to version 2.0.4 with previous version 2.0.3 dated 2018-07-04

Title: Functions for Robust Variable Handling
Description: Variables are the fundamental parts of each programming language but handling them efficiently might be frustrating for programmers. This package contains some functions to help user (especially data explorers) to make more sense of their variables and take the most out of variables and hardware resources. These functions are written, collected and crafted over 7 years of experience in statistical data analysis on high-dimensional data, and for each of them there was a need. Functions in this package are suppose to be efficient and easy to use, hence they will be frequently updated to make them more convenient.
Author: Mehrad Mahmoudian [aut, cre]
Maintainer: Mehrad Mahmoudian <m.mahmoudian@gmail.com>

Diff between varhandle versions 2.0.3 dated 2018-07-04 and 2.0.4 dated 2019-10-21

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New package sen2r with initial version 1.1.0
Package: sen2r
Type: Package
Title: Find, Download and Process Sentinel-2 Data
Version: 1.1.0
Authors@R: c(person("Luigi", "Ranghetti", email = "luigi@ranghetti.info", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-6207-5188")), person("Lorenzo", "Busetto", email = "lbusett@gmail.com", role = c("aut"), comment = c(ORCID = "0000-0001-9634-6038")))
Description: Functions to download Sentinel-2 optical images and perform preliminary processing operations. 'sen2r' provides the instruments required to easily perform (and eventually automate) the steps necessary to build a complete Sentinel-2 processing chain. A Graphical User Interface to facilitate data processing is also provided.
License: GPL-3
Encoding: UTF-8
URL: http://sen2r.ranghetti.info, https://github.com/ranghetti/sen2r
BugReports: https://github.com/ranghetti/sen2r/issues
Depends: R (>= 3.5.0)
Imports: reticulate, methods, digest, magrittr, sf, stars, data.table, raster, XML, jsonlite, geojsonio, leaflet, leaflet.extras, mapedit, shiny, shinyFiles, shinydashboard, shinyjs, shinyWidgets, foreach, parallel, doParallel, units, httr
Suggests: spelling, geojsonlint, httptest, knitr, rmarkdown, testthat (>= 2.1.0)
SystemRequirements: GDAL (>= 2.1.2), PROJ (>= 4.9.1), GEOS (>= 3.4.2), Cairo, Curl, NetCDF, jq, Protocol Buffers, V8, OpenSSL, Libxml2.
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Language: en-GB
NeedsCompilation: no
Packaged: 2019-10-07 15:58:00 UTC; lranghetti
Author: Luigi Ranghetti [aut, cre] (<https://orcid.org/0000-0001-6207-5188>), Lorenzo Busetto [aut] (<https://orcid.org/0000-0001-9634-6038>)
Maintainer: Luigi Ranghetti <luigi@ranghetti.info>
Repository: CRAN
Date/Publication: 2019-10-21 18:00:02 UTC

More information about sen2r at CRAN
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New package botor with initial version 0.2.0
Type: Package
Package: botor
Authors@R: c( person("Gergely", "Daróczi", , "daroczig@rapporter.net", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-3149-8537")), person("System1", role = c("fnd")) )
Title: 'AWS Python SDK' ('boto3') for R
Description: Fork-safe, raw access to the 'Amazon Web Services' ('AWS') 'SDK' via the 'boto3' 'Python' module, and convenient helper functions to query the 'Simple Storage Service' ('S3') and 'Key Management Service' ('KMS'), partial support for 'IAM', the 'Systems Manager Parameter Store' and 'Secrets Manager'.
SystemRequirements: boto3 (https://aws.amazon.com/sdk-for-python)
Version: 0.2.0
Date: 2019-09-23
URL: https://daroczig.github.io/botor
BugReports: https://github.com/daroczig/botor/issues
RoxygenNote: 6.1.1
License: AGPL-3
Encoding: UTF-8
Imports: utils, reticulate, checkmate, logger
Suggests: testthat, covr, digest
NeedsCompilation: no
Packaged: 2019-09-23 00:39:27 UTC; daroczig
Author: Gergely Daróczi [aut, cre] (<https://orcid.org/0000-0003-3149-8537>), System1 [fnd]
Maintainer: Gergely Daróczi <daroczig@rapporter.net>
Repository: CRAN
Date/Publication: 2019-10-21 17:40:02 UTC

More information about botor at CRAN
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Package pingr updated to version 2.0.0 with previous version 1.2.0 dated 2019-10-09

Title: Check if a Remote Computer is Up
Description: Check if a remote computer is up. It can either just call the system ping command, or check a specified TCP port.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>

Diff between pingr versions 1.2.0 dated 2019-10-09 and 2.0.0 dated 2019-10-21

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More information about pingr at CRAN
Permanent link

Package miniparquet updated to version 0.1.2 with previous version 0.1.1 dated 2019-10-16

Title: Read Parquet Files
Description: Self-sufficient reader for a subset of Parquet files. Nested tables, compression besides Snappy and encryption are not supported.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>), Google Inc. [cph], Apache Software Foundation [cph], Daniel Lemire [cph], Chad Walters [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>

Diff between miniparquet versions 0.1.1 dated 2019-10-16 and 0.1.2 dated 2019-10-21

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Permanent link

Package BFS updated to version 0.2.2 with previous version 0.2.1 dated 2019-10-16

Title: Search and Download Data from the Swiss Federal Statistical Office (BFS)
Description: Search and download data from the Swiss Federal Statistical Office <https://www.bfs.admin.ch/>.
Author: Felix Luginbuhl [aut, cre]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>

Diff between BFS versions 0.2.1 dated 2019-10-16 and 0.2.2 dated 2019-10-21

 DESCRIPTION |    6 +++---
 MD5         |    6 +++---
 R/main.R    |    3 +--
 README.md   |   50 +++++++++++++++++++++++++-------------------------
 4 files changed, 32 insertions(+), 33 deletions(-)

More information about BFS at CRAN
Permanent link

Package JuliaCall updated to version 0.17.0 with previous version 0.16.6 dated 2019-06-06

Title: Seamless Integration Between R and 'Julia'
Description: Provides an R interface to 'Julia', which is a high-level, high-performance dynamic programming language for numerical computing, see <https://julialang.org/> for more information. It provides a high-level interface as well as a low-level interface. Using the high level interface, you could call any 'Julia' function just like any R function with automatic type conversion. Using the low level interface, you could deal with C-level SEXP directly while enjoying the convenience of using a high-level programming language like 'Julia'.
Author: Changcheng Li [aut, cre], Randy Lai [ctb], Dmitri Grominski [ctb], Nagi Teramo [ctb]
Maintainer: Changcheng Li <cxl508@psu.edu>

Diff between JuliaCall versions 0.16.6 dated 2019-06-06 and 0.17.0 dated 2019-10-21

 DESCRIPTION                                                              |    8 
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 MD5                                                                      |  183 +-
 NAMESPACE                                                                |  157 -
 NEWS.md                                                                  |  543 +++--
 R/JuliaCall.R                                                            |  116 -
 R/JuliaObject.R                                                          |  293 +--
 R/JuliaObjectExt.R                                                       |  102 -
 R/JuliaPlain.R                                                           |   52 
 R/Jupyter.R                                                              |   10 
 R/RMarkdown.R                                                            |  312 +--
 R/RcppExports.R                                                          |   38 
 R/aaa.R                                                                  |  144 -
 R/argument.R                                                             |   18 
 R/console.R                                                              |  132 -
 R/dispatch.R                                                             |  364 ++--
 R/interface.R                                                            |  430 ++--
 R/internal_generic.R                                                     |   34 
 R/package.R                                                              |  102 -
 R/package_wrap.R                                                         |only
 R/piper.R                                                                |   48 
 R/plotsViewer.R                                                          |   42 
 R/util.R                                                                 |   30 
 R/zzz.R                                                                  |  422 ++--
 README.md                                                                |  656 +++----
 build/vignette.rds                                                       |binary
 inst/CITATION                                                            |   30 
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 inst/julia/REPLhook.jl                                                   |   26 
 inst/julia/RmdStd.jl                                                     |   58 
 inst/julia/asR.jl                                                        |   28 
 inst/julia/convert.jl                                                    |   34 
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 inst/julia/display/RmdJulia.jl                                           |   78 
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 inst/julia/incomplete_console.jl                                         |   16 
 inst/julia/install_dependency.jl                                         |   68 
 inst/julia/interface1.jl                                                 |   70 
 inst/julia/libjulia.jl                                                   |   34 
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 man/JuliaCall.Rd                                                         |  120 -
 man/JuliaObject.Rd                                                       |   52 
 man/JuliaObjectFields.Rd                                                 |   68 
 man/autowrap.Rd                                                          |   38 
 man/call.Rd                                                              |   96 -
 man/eng_juliacall.Rd                                                     |   38 
 man/grapes-greater-than-J-grapes.Rd                                      |   46 
 man/julia_assign.Rd                                                      |   50 
 man/julia_command.Rd                                                     |   60 
 man/julia_console.Rd                                                     |   34 
 man/julia_eval.Rd                                                        |   70 
 man/julia_exists.Rd                                                      |   42 
 man/julia_help.Rd                                                        |   42 
 man/julia_package.Rd                                                     |   79 
 man/julia_pkg_wrap.Rd                                                    |only
 man/julia_setup.Rd                                                       |   96 -
 man/julia_source.Rd                                                      |   28 
 man/plotsViewer.Rd                                                       |   22 
 tests/testthat.R                                                         |    6 
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Package PMCMRplus updated to version 1.4.2 with previous version 1.4.1 dated 2018-11-12

Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended
Description: For one-way layout experiments the one-way ANOVA can be performed as an omnibus test. All-pairs multiple comparisons tests (Tukey-Kramer test, Scheffe test, LSD-test) and many-to-one tests (Dunnett test) for normally distributed residuals and equal within variance are available. Furthermore, all-pairs tests (Games-Howell test, Tamhane's T2 test, Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one (Tamhane-Dunnett Test) for normally distributed residuals and heterogeneous variances are provided. Van der Waerden's normal scores test for omnibus, all-pairs and many-to-one tests is provided for non-normally distributed residuals and homogeneous variances. The Kruskal-Wallis, BWS and Anderson-Darling omnibus test and all-pairs tests (Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow- Fligner test) as well as many-to-one (Nemenyi test, Dunn test, U-test) are given for the analysis of variance by ranks. Non-parametric trend tests (Jonckheere test, Cuzick test, Johnson-Mehrotra test, Spearman test) are included. In addition, a Friedman-test for one-way ANOVA with repeated measures on ranks (CRBD) and Skillings-Mack test for unbalanced CRBD is provided with consequent all-pairs tests (Nemenyi test, Siegel test, Miller test, Conover test, Exact test) and many-to-one tests (Nemenyi test, Demsar test, Exact test). A trend can be tested with Pages's test. Durbin's test for a two-way balanced incomplete block design (BIBD) is given in this package as well as Gore's test for CRBD with multiple observations per cell is given. Outlier tests, Mandel's k- and h statistic as well as functions for Type I error and Power analysis as well as generic summary, print and plot methods are provided.
Author: Thorsten Pohlert [aut, cre] (<https://orcid.org/0000-0003-3855-3025>)
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>

Diff between PMCMRplus versions 1.4.1 dated 2018-11-12 and 1.4.2 dated 2019-10-21

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More information about PMCMRplus at CRAN
Permanent link

New package emba with initial version 0.1.1
Package: emba
Type: Package
Title: Ensemble Boolean Model Biomarker Analysis
Version: 0.1.1
Authors@R: person("John", "Zobolas", role = c("aut", "cph", "cre"), email = "bblodfon@gmail.com", comment = c(ORCID = "0000-0002-3609-8674"))
Description: Analysis and visualization of an ensemble of boolean models for biomarker discovery in cancer cell networks. The package allows to easily import the data results of a software pipeline that predicts synergistic drug combinations in cancer cell lines, developed by the DrugLogics research group in NTNU. It has generic functions that can be used to split a boolean model dataset to model groups with regards to the models predictive performance (number of true positive predictions or Matthews correlation coefficient score) or synergy prediction based on a given set of observed synergies and find the average activity difference per network node between all group pairs. Thus, given user-specific thresholds, important nodes (biomarkers) can be accessed in the sense that they make the models predict specific synergies (synergy biomarkers) or have better performance in general (performance biomarkers). Lastly, if the boolean models have a specific equation form and differ only in their link operator, link operator biomarkers can also be assessed.
License: MIT + file LICENSE
URL: https://github.com/bblodfon/emba
BugReports: https://github.com/bblodfon/emba/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: graphics, grDevices, utils, rje (>= 1.9), igraph (>= 1.2.4), visNetwork (>= 2.0.7), Ckmeans.1d.dp (>= 4.2.2), magrittr (>= 1.5), usefun (>= 0.4.1)
Suggests: testthat
NeedsCompilation: no
Packaged: 2019-10-18 14:20:45 UTC; john
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>
Repository: CRAN
Date/Publication: 2019-10-21 14:30:02 UTC

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New package DiscreteQvalue with initial version 1.0
Package: DiscreteQvalue
Title: Improved q-Values for Discrete Uniform and Homogeneous Tests
Version: 1.0
Authors@R: c( person("Marta", "Cousido Rocha", email = "martacousido@uvigo.es", role = c("aut", "cre")), person("José Carlos", "Soage González", email = "jsoage@uvigo.es", role = "ctr"), person("Jacobo", "de Uña Álvarez", email = "jacobo@uvigo.es", role = c("aut", "ths")), person("Sebastian", "Döhler", role = "aut"))
Maintainer: Marta Cousido Rocha <martacousido@uvigo.es>
Suggests: coin, exactRankTests
Description: We consider a multiple testing procedure used in many modern applications which is the q-value method proposed by Storey and Tibshirani (2003) <DOI:10.1073/pnas.1530509100>. The q-value method is based on the false discovery rate (FDR), hence versions of the q-value method can be defined depending on which estimator of the proportion of true null hypotheses, pi_0, is plugged in the FDR estimator. We implement the q-value method based on two classical pi_0 estimators, and furthermore, we propose and implement three versions of the q-value method for homogeneous discrete uniform P-values based on pi_0 estimators which take into account the discrete distribution of the P-values.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-10-18 11:50:39 UTC; mcousido
Author: Marta Cousido Rocha [aut, cre], José Carlos Soage González [ctr], Jacobo de Uña Álvarez [aut, ths], Sebastian Döhler [aut]
Repository: CRAN
Date/Publication: 2019-10-21 14:10:09 UTC

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Package digest updated to version 0.6.22 with previous version 0.6.21 dated 2019-09-20

Title: Create Compact Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash' and 'spookyhash' algorithms) permitting easy comparison of R language objects, as well as functions such as'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.
Author: Dirk Eddelbuettel <edd@debian.org> with contributions by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek, Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen, Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx, Michel Lang, Viliam Simko, Kurt Hornik, Radford Neal, Kendon Bell, Matthew de Queljoe, Ion Suruceanu, and Bill Denney.
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between digest versions 0.6.21 dated 2019-09-20 and 0.6.22 dated 2019-10-21

 ChangeLog                     |   72 ++++++++
 DESCRIPTION                   |   10 -
 MD5                           |   38 ++--
 NAMESPACE                     |    1 
 R/AES.R                       |  231 +++++++++++++++++-----------
 R/digest.R                    |  115 ++++++++------
 R/hmac.R                      |   20 ++
 R/sha1.R                      |   60 ++++++-
 R/vdigest.R                   |   70 ++------
 README.md                     |   16 +
 inst/doc/sha1.html            |    8 
 inst/tinytest/test_aes.R      |   40 ++++
 inst/tinytest/test_digest.R   |   53 ------
 inst/tinytest/test_encoding.R |only
 inst/tinytest/test_misc.R     |only
 inst/tinytest/test_sha1.R     |   54 ++++++
 man/AES.Rd                    |  345 ++++++++++++++++++++++--------------------
 man/digest.Rd                 |    6 
 man/hmac.Rd                   |    6 
 man/sha1.rd                   |    9 -
 src/digest.c                  |   68 ++++----
 21 files changed, 738 insertions(+), 484 deletions(-)

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New package cwbtools with initial version 0.1.0
Package: cwbtools
Type: Package
Title: Tools to create, modify and manage 'CWB' Corpora
Version: 0.1.0
Date: 2019-10-09
Authors@R: c(person("Andreas", "Blaette", role = c("aut", "cre"), email = "andreas.blaette@uni-due.de"), person("Christoph", "Leonhardt", role = "ctb", email = "christoph.leonhardt@uni-due.de") )
Description: The 'Corpus Workbench' ('CWB', <http://cwb.sourceforge.net/>) offers a classic and mature approach for working with large, linguistically and structurally annotated corpora. The 'CWB' is memory efficient and its design makes running queries fast (Evert and Hardie 2011, <http://www.stefan-evert.de/PUB/EvertHardie2011.pdf>). The 'cwbtools' package offers pure R tools to create indexed corpus files as well as high-level wrappers for the original C implementation of CWB as exposed by the 'RcppCWB' package <https://CRAN.R-project.org/package=RcppCWB>. Additional functionality to add and modify annotations of corpora from within R makes working with CWB indexed corpora much more flexible and convenient. The 'cwbtools' package in combination with the R packages 'RcppCWB' (<https://CRAN.R-project.org/package=RcppCWB>) and 'polmineR' (<https://CRAN.R-project.org/package=polmineR>) offers a leightweight infrastructure to support the combination of quantitative and qualitative approaches for working with textual data.
Imports: data.table, R6, xml2, stringi, curl, RcppCWB (>= 0.2.8), pbapply, methods
Suggests: tm (>= 0.7.3), knitr, tokenizers (>= 0.2.1), tidytext, SnowballC, janeaustenr, devtools, polmineR, NLP
VignetteBuilder: knitr
LazyData: yes
License: GPL-3
Language: en-US
Encoding: UTF-8
Collate: 'cwbtools.R' 'pkg.R' 'utils.R' 'p_attribute.R' 's_attribute.R' 'registry_file.R' 'CorpusData.R' 'corpus.R' 'cwb.R' 'ner.R'
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-10-18 11:10:34 UTC; andreasblaette
Author: Andreas Blaette [aut, cre], Christoph Leonhardt [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Repository: CRAN
Date/Publication: 2019-10-21 14:10:03 UTC

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New package cnaOpt with initial version 0.1.0
Package: cnaOpt
Title: Optimizing Consistency and Coverage in Configurational Causal Modeling
Authors@R: c(person("Mathias", "Ambuehl", role = c("aut", "cre", "cph"), email = "mathias.ambuehl@consultag.ch"), person("Michael", "Baumgartner", role = c("aut", "cph"), email = "michael.baumgartner@unige.ch") )
Version: 0.1.0
Date: 2019-10-07
Description: This is an add-on to the 'cna' package <https://CRAN.R-project.org/package=cna> comprising various functions for optimizing consistency and coverage scores of models of configurational comparative methods as Coincidence Analysis (CNA) and Qualitative Comparative Analysis (QCA). The function conCovOpt() calculates con-cov optima, selectMax() selects con-cov maxima among the con-cov optima, DNFbuild() can be used to build models actually reaching those optima, and findOutcomes() identifies those factor values in analyzed data that can be modeled as outcomes. For a theoretical introduction to these functions see <https://people.uib.no/mba110/docs/ConCovOpt.pdf>.
Depends: R (>= 3.4.0), cna (>= 2.2.1)
Imports: Rcpp, matrixStats, ggplot2, dplyr, stats, utils
LinkingTo: Rcpp
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Packaged: 2019-10-18 10:29:00 UTC; MAM
Author: Mathias Ambuehl [aut, cre, cph], Michael Baumgartner [aut, cph]
Maintainer: Mathias Ambuehl <mathias.ambuehl@consultag.ch>
Repository: CRAN
Date/Publication: 2019-10-21 14:10:06 UTC

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New package RecordTest with initial version 0.1.0
Package: RecordTest
Type: Package
Title: Inference Tools Based on Record Statistics
Version: 0.1.0
Date: 2019-09-23
Authors@R: c(person("Jorge", "Castillo-Mateo", role = c("aut","cre","cph"), email = "720193@unizar.es", comment = c(ORCID = "0000-0003-3859-0248")), person("Ana C.", "Cebrián", role = "aut"), person("Jesús", "Asín", role = "dtc"))
Author: Jorge Castillo-Mateo [aut, cre, cph] (<https://orcid.org/0000-0003-3859-0248>), Ana C. Cebrián [aut], Jesús Asín [dtc]
Maintainer: Jorge Castillo-Mateo <720193@unizar.es>
Depends: R (>= 2.10)
Imports: ggplot2, car, Smisc
Description: Statistical tools based on probabilistic properties of the occurrence of records in a sequence X_t of independent and identically distributed random variables. More details on the objective of the library can be found with help(RecordTest-package).
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-10-04 19:20:13 UTC; USUARIO
Repository: CRAN
Date/Publication: 2019-10-21 13:20:02 UTC

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New package LipidMS with initial version 1.1.0
Package: LipidMS
Type: Package
Title: Lipid Annotation for LC-MS/MS DIA Data
Version: 1.1.0
Author: M Isabel Alcoriza-Balaguer, J Carlos Garcia-Canaveras
Maintainer: M Isabel Alcoriza-Balaguer <maialba@alumni.uv.es>
Description: Lipid annotation in untargeted liquid chromatography-data independent acquisition-mass spectrometry lipidomics based on fragmentation and intensity rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Depends: R (>= 3.1), enviPick, methods, purrr, CHNOSZ, stats, LipidMSdata
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2019-10-21 08:39:04 UTC; 73581298C
Repository: CRAN
Date/Publication: 2019-10-21 13:30:08 UTC

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Package gdalcubes updated to version 0.2.3 with previous version 0.2.2 dated 2019-10-15

Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time, applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values, exporting data cubes as 'netCDF' or 'GeoTIFF' files, and plotting. The package implements lazy evaluation and multithreading. All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries. See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] (<https://orcid.org/0000-0001-5281-3896>), Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>), Roger Bivand [ctb], Lewis Van Winkle [cph], Ole Christian Eidheim [cph], Niels Lohmann [cph], Howard Hinnant [cph], Adrian Colomitchi [cph], Florian Dang [cph], Paul Thompson [cph], Tomasz Kamiński [cph]
Maintainer: Marius Appel <marius.appel@uni-muenster.de>

Diff between gdalcubes versions 0.2.2 dated 2019-10-15 and 0.2.3 dated 2019-10-21

 DESCRIPTION                          |    8 ++++----
 MD5                                  |   32 +++++++++++++++++---------------
 NEWS.md                              |    6 ++++++
 configure                            |   18 +++++++++---------
 configure.ac                         |    2 +-
 inst/doc/MODIS.html                  |   20 +++++++++++++-------
 inst/formats/MxD10A2.json            |    4 ++--
 inst/formats/MxD11A1.json            |   12 ++++++------
 inst/formats/MxD11A2.json            |   16 ++++++++--------
 inst/formats/MxD13A2.json            |only
 inst/formats/MxD13A3.json            |   14 +++++++-------
 inst/formats/MxD13Q1.json            |   16 ++++++++--------
 inst/formats/MxD14A2.json            |only
 src/gdalcubes.cpp                    |    2 +-
 src/gdalcubes/src/build_info.h       |    4 ++--
 src/gdalcubes/src/cube.h             |    8 ++++----
 src/gdalcubes/src/swarm.h            |    2 +-
 src/gdalcubes/src/vector_queries.cpp |    6 +++---
 18 files changed, 92 insertions(+), 78 deletions(-)

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New package fresh with initial version 0.1.0
Package: fresh
Title: Create Custom 'Bootstrap' Themes to Use in 'Shiny'
Version: 0.1.0
Authors@R: c( person("Victor", "Perrier", email = "victor.perrier@dreamrs.fr", role = c("aut", "cre")), person("Fanny", "Meyer", role = "aut"), person("Thomas", "Park", role = c("ctb", "cph"), comment = "Bootswatch themes"), person("Mark", "Otto", role = "ctb", comment = "Bootstrap library"), person("Jacob", "Thornton", role = "ctb", comment = "Bootstrap library"), person(family = "Bootstrap contributors", role = "ctb", comment = "Bootstrap library"), person(family = "Twitter, Inc", role = "cph", comment = "Bootstrap library"), person("onkbear", role = c("ctb", "cph"), comment = "admin-lte-2-sass"))
Description: Customize 'Bootstrap' and 'Bootswatch' themes, like colors, fonts, grid layout, to use in 'Shiny' applications, 'rmarkdown' documents and 'flexdashboard'.
URL: https://github.com/dreamRs/fresh
BugReports: https://github.com/dreamRs/fresh/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: sass, htmltools, shiny, rstudioapi
Suggests: shinyWidgets, shinydashboard, knitr, rmarkdown, testthat (>= 2.1.0), covr
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-10-18 08:37:15 UTC; perri
Author: Victor Perrier [aut, cre], Fanny Meyer [aut], Thomas Park [ctb, cph] (Bootswatch themes), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), onkbear [ctb, cph] (admin-lte-2-sass)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Repository: CRAN
Date/Publication: 2019-10-21 14:00:02 UTC

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Package biofiles (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-11-21 1.0.0

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Package SCRABBLE (with last version 0.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-03-07 0.0.1

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New package rbridge with initial version 1.0
Package: rbridge
Type: Package
Title: Restricted Bridge Estimation
Version: 1.0
Date: 2019-10-08
Author: Bahadir Yuzbasi, Mohammad Arashi and Fikri Akdeniz
Maintainer: Bahadir Yuzbasi <b.yzb@hotmail.com>
Description: Bridge Regression estimation with linear restrictions defined in Yuzbasi et al. (2019) <arXiv:910.03660>. Special cases of this approach fit the restricted LASSO, restricted RIDGE and restricted Elastic Net estimators.
License: GPL-3
Imports: Rcpp, Matrix, dplyr
Suggests: methods, utils, stats, testthat
Encoding: UTF-8
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2019-10-17 09:05:20 UTC; bahadiryuzbasi
Repository: CRAN
Date/Publication: 2019-10-21 10:30:02 UTC

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New package baymedr with initial version 0.1.0
Package: baymedr
Title: Computation of Bayes Factors for Common Biomedical Designs
Version: 0.1.0
Date: 2019-10-17
Authors@R: c( person(given = "Maximilian", family = "Linde", role = c("aut", "cre"), email = "maximilian.linde.92@gmail.com", comment = c(ORCID = "0000-0001-8421-090X")), person(given = "Don", family = "van Ravenzwaaij", role= "aut", email = "d.van.ravenzwaaij@rug.nl", comment = c(ORCID = "0000-0002-5030-4091")), person(given = "Quentin F.", family = "Gronau", role = "ctb", email = "q.f.gronau@uva.nl", comment = c(ORCID = "0000-0001-5510-6943")))
Description: BAYesian inference for MEDical designs in R. Convenience functions for the computation of Bayes factors for common biomedical research designs. Implemented are functions to test the equivalence (equiv_bf), non-inferiority (infer_bf), and superiority (super_bf) of an experimental group compared to a control group. Bayes factors for these three tests can be computed based on raw data (x, y) or summary statistics (n_x, n_y, mean_x, mean_y, sd_x, sd_y [or ci_margin and ci_level]), making it possible to reanalyse findings (e.g., from publications) without the need to obtain the raw data.
Depends: R (>= 3.2.0)
Imports: methods, rlang, stats, stringr
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
RoxygenNote: 6.1.1
License: GPL-3
Encoding: UTF-8
LazyData: true
URL: https://github.com/maxlinde/baymedr
BugReports: https://github.com/maxlinde/baymedr/issues
NeedsCompilation: no
Packaged: 2019-10-17 14:37:52 UTC; maximilian
Author: Maximilian Linde [aut, cre] (<https://orcid.org/0000-0001-8421-090X>), Don van Ravenzwaaij [aut] (<https://orcid.org/0000-0002-5030-4091>), Quentin F. Gronau [ctb] (<https://orcid.org/0000-0001-5510-6943>)
Maintainer: Maximilian Linde <maximilian.linde.92@gmail.com>
Repository: CRAN
Date/Publication: 2019-10-21 10:50:02 UTC

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Package oceanis updated to version 1.0.5 with previous version 1.0.4 dated 2019-09-23

Title: Cartography for Statistical Analysis
Description: Creating maps for statistical analysis such as proportional circles, chroropleth, typology and flows. Some functions use 'shiny' or 'leaflet' technologies for dynamism and interactivity. The great features are : - Create maps in a web environment where the parameters are modifiable on the fly ('shiny' and 'leaflet' technology). - Create interactive maps through zoom and pop-up ('leaflet' technology). - Create frozen maps with the possibility to add labels.
Author: Sébastien CALVET - PSAR-AT - DR Provence-Alpes-Cote d'Azur - INSEE [cre, aut], Sophie AUDRIC - PSAR-AT - DR Provence-Alpes-Cote d'Azur - INSEE [aut], SED - DR Hauts-de-France - INSEE [ctb], PSAR-SL - DR Auvergne-Rhone-Alpes - INSEE [ctb], PSAR-EEP - DR Occitanie - INSEE [ctb], SED - DR Pays-de-la-Loire - INSEE [ctb]
Maintainer: Sébastien CALVET <sebastien.calvet@insee.fr>

Diff between oceanis versions 1.0.4 dated 2019-09-23 and 1.0.5 dated 2019-10-21

 oceanis-1.0.4/oceanis/vignettes/doc       |only
 oceanis-1.0.5/oceanis/DESCRIPTION         |    8 -
 oceanis-1.0.5/oceanis/MD5                 |   13 +-
 oceanis-1.0.5/oceanis/NAMESPACE           |    6 -
 oceanis-1.0.5/oceanis/R/k_joignantes.R    |  137 +++++++++++++++---------------
 oceanis-1.0.5/oceanis/R/plot_joignantes.R |    2 
 oceanis-1.0.5/oceanis/R/plot_saphirs.R    |    2 
 oceanis-1.0.5/oceanis/build/partial.rdb   |binary
 8 files changed, 82 insertions(+), 86 deletions(-)

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Package mlVAR updated to version 0.4.4 with previous version 0.4.3 dated 2019-06-20

Title: Multi-Level Vector Autoregression
Description: Estimates the multi-level vector autoregression model on time-series data. Three network structures are obtained: temporal networks, contemporaneous networks and between-subjects networks.
Author: Sacha Epskamp, Marie K. Deserno and Laura F. Bringmann
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

Diff between mlVAR versions 0.4.3 dated 2019-06-20 and 0.4.4 dated 2019-10-21

 mlVAR-0.4.3/mlVAR/R/stanModel.R    |only
 mlVAR-0.4.3/mlVAR/R/stan_mlVAR.R   |only
 mlVAR-0.4.4/mlVAR/DESCRIPTION      |   11 ++++++-----
 mlVAR-0.4.4/mlVAR/MD5              |   12 +++++-------
 mlVAR-0.4.4/mlVAR/NEWS             |    3 +++
 mlVAR-0.4.4/mlVAR/R/mlVAR0.R       |   18 +++++++++---------
 mlVAR-0.4.4/mlVAR/R/mlVARmodel.R   |    2 +-
 mlVAR-0.4.4/mlVAR/R/movingWindow.R |   18 +++++++++---------
 8 files changed, 33 insertions(+), 31 deletions(-)

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Package rexpokit (with last version 0.26.6.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-10-08 0.26.6.5
2019-07-02 0.26.6.4
2019-06-27 0.26.6.2
2018-10-02 0.26.6
2018-05-06 0.26.3
2018-01-31 0.26.2
2017-08-15 0.26.1
2013-07-15 0.24.1
2013-02-16 0.24
2013-02-11 0.23

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Package rrcovNA (with last version 0.4-9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-09-05 0.4-9
2016-02-15 0.4-8
2014-12-02 0.4-7
2013-08-28 0.4-4
2012-04-11 0.4-03
2011-05-08 0.4-02
2010-10-07 0.3-00

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Package stringdist updated to version 0.9.5.5 with previous version 0.9.5.3 dated 2019-10-11

Title: Approximate String Matching and String Distance Functions
Description: Implements an approximate string matching version of R's native 'match' function. Can calculate various string distances based on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An implementation of soundex is provided as well. Distances can be computed between character vectors while taking proper care of encoding or between integer vectors representing generic sequences. This package is built for speed and runs in parallel by using 'openMP'. An API for C or C++ is exposed as well.
Author: Mark van der Loo [aut, cre] (<https://orcid.org/0000-0002-9807-4686>), Jan van der Laan [ctb], R Core Team [ctb], Nick Logan [ctb], Chris Muir [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>

Diff between stringdist versions 0.9.5.3 dated 2019-10-11 and 0.9.5.5 dated 2019-10-21

 DESCRIPTION                          |   12 +++++++-----
 MD5                                  |   15 ++++++++-------
 NEWS                                 |   12 +++++++++++-
 R/stringsim.R                        |    4 ++--
 README.md                            |only
 inst/doc/RJournal_6_111-122-2014.pdf |binary
 inst/doc/stringdist_C-Cpp_api.pdf    |binary
 inst/tinytest/test_seq_dist.R        |   22 +++++++++++-----------
 inst/tinytest/test_stringsim.R       |   14 ++++++--------
 9 files changed, 45 insertions(+), 34 deletions(-)

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New package Rphylopars with initial version 0.2.11
Package: Rphylopars
Version: 0.2.11
Title: Phylogenetic Comparative Tools for Missing Data and Within-Species Variation
Author: Eric W. Goolsby, Jorn Bruggeman, Cecile Ane
Maintainer: Eric W. Goolsby <eric.goolsby.evolution@gmail.com>
Description: Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data. Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.
Date: 2019-10-20
Depends: ape
License: GPL (>= 2)
URL: http://github.com/ericgoolsby/Rphylopars/wiki
Imports: Rcpp, doBy, geiger, phylolm, phytools, mvnmle, Matrix, MASS
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2019-10-20 19:46:56 UTC; Eric
Repository: CRAN
Date/Publication: 2019-10-21 07:50:02 UTC

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Package DPQ updated to version 0.3-5 with previous version 0.3-3 dated 2019-10-02

Title: Density, Probability, Quantile ('DPQ') Computations
Description: Computations for approximations and alternatives for the 'DPQ' (Density (pdf), Probability (cdf) and Quantile) functions for probability distributions in R. Primary focus is on (central and non-central) beta, gamma and related distributions such as the chi-squared, F, and t. -- This is for the use of researchers in these numerical approximation implementations, notably for my own use in order to improve R`s own pbeta(), qgamma(), ..., etc: {'"dpq"'-functions}. -- We plan to complement with 'DPQmpfr' to be suggested later.
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Morten Welinder [ctb] (pgamma C code, see PR#7307, Jan. 2005), Wolfgang Viechtbauer [ctb] (dtWV(), 2002), Ross Ihaka [ctb] (src/qchisq_appr.c), Marius Hofert [ctb] (lsum(), lssum()), R-core [ctb] (src/{dpq.h, algdiv.c, pnchisq.c}), R Foundation [cph] (src/qchisq-appr.c)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>

Diff between DPQ versions 0.3-3 dated 2019-10-02 and 0.3-5 dated 2019-10-21

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2018-02-08 1.01

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2019-02-20 1.1
2019-02-19 1.0

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Package mpath (with last version 0.3-18) was removed from CRAN

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2019-10-06 0.3-18
2019-08-01 0.3-17
2019-07-10 0.3-16

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Package bvpSolve (with last version 1.3.3) was removed from CRAN

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2016-12-06 1.3.3
2015-09-22 1.3.2
2013-08-15 1.2.4
2013-05-13 1.2.3.1
2013-05-11 1.2.3
2011-08-11 1.2.2
2010-09-13 1.2
2010-02-15 1.1
2009-07-01 1.0

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Package gsscopu (with last version 0.9-3) was removed from CRAN

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2015-07-02 0.9-3
2014-12-06 0.9-2
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Package dglars (with last version 2.1.3) was removed from CRAN

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2019-10-09 2.1.3
2019-06-14 2.1.2
2019-04-06 2.1.1
2018-10-09 2.1.0
2018-04-24 2.0.1
2017-02-28 2.0.0
2014-08-09 1.0.5
2013-12-20 1.0.4
2013-10-09 1.0.3
2013-09-04 1.0.2
2013-06-19 1.0.1
2012-11-08 1.0

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Package PSM (with last version 0.8-12) was removed from CRAN

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2018-05-12 0.8-12

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2014-12-29 1.0-1
2012-04-19 1.0

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Package jmvcore updated to version 1.0.8 with previous version 1.0.0 dated 2019-05-28

Title: Dependencies for the 'jamovi' Framework
Description: A framework for creating rich interactive analyses for the jamovi platform (see <https://www.jamovi.org> for more information).
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>

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Package fy updated to version 0.2.0 with previous version 0.1.0 dated 2019-05-16

Title: Utilities for Financial Years
Description: In Australia, a financial year (or fiscal year) is the period from 1 July to 30 June of the following calendar year. As such, many databases need to represent and validate financial years efficiently. While the use of integer years with a convention that they represent the year ending is common, it may lead to ambiguity with calendar years. On the other hand, string representations may be too inefficient and do not easily admit arithmetic operations. This package tries to make validation of financial years quicker while retaining clarity.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>

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Package dlookr updated to version 0.3.12 with previous version 0.3.11 dated 2019-08-19

Title: Tools for Data Diagnosis, Exploration, Transformation
Description: A collection of tools that support data diagnosis, exploration, and transformation. Data diagnostics provides information and visualization of missing values and outliers and unique and negative values to help you understand the distribution and quality of your data. Data exploration provides information and visualization of the descriptive statistics of univariate variables, normality tests and outliers, correlation of two variables, and relationship between target variable and predictor. Data transformation supports binning for categorizing continuous variables, imputates missing values and outliers, resolving skewness. And it creates automated reports that support these three tasks.
Author: Choonghyun Ryu [aut, cre]
Maintainer: Choonghyun Ryu <choonghyun.ryu@gmail.com>

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Package zoib updated to version 1.5.4 with previous version 1.5.3 dated 2019-09-13

Title: Bayesian Inference for Beta Regression and Zero-or-One Inflated Beta Regression
Description: Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Author: Fang Liu <fang.liu.131@nd.edu> with contributions from Yunchuan Kong
Maintainer: Fang Liu <fang.liu.131@nd.edu>

Diff between zoib versions 1.5.3 dated 2019-09-13 and 1.5.4 dated 2019-10-21

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Package partitions updated to version 1.9-22 with previous version 1.9-19 dated 2017-07-08

Title: Additive Partitions of Integers
Description: Additive partitions of integers. Enumerates the partitions, unequal partitions, and restricted partitions of an integer; the three corresponding partition functions are also given. Set partitions are now included.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>

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Package ledger updated to version 2.0.4 with previous version 2.0.2 dated 2019-09-03

Title: Utilities for Importing Data from Plain Text Accounting Files
Description: Utilities for querying plain text accounting files from 'Ledger', 'HLedger', and 'Beancount'.
Author: Trevor L Davis [aut, cre], Jenya Sovetkin [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>

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Package cotrend updated to version 1.0.2 with previous version 1.0.1 dated 2018-03-19

Title: Consistent Co-Trending Rank Selection
Description: Implements cointegration/co-trending rank selection algorithm in Guo and Shintani (2013) "Consistent co-trending rank selection when both stochastic and nonlinear deterministic trends are present". The Econometrics Journal 16: 473-483 <doi:10.1111/j.1368-423X.2012.00392.x>. Numbered examples correspond to Feb 2011 preprint <http://www.fas.nus.edu.sg/ecs/events/seminar/seminar-papers/05Apr11.pdf>.
Author: A. Christian Silva
Maintainer: A. Christian Silva <a.christian.silva@gmail.com>

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