Title: Multicollinearity Diagnostic Measures
Description: Package computes popular and widely used multicollinearity diagnostic measures <doi:10.17576/jsm-2019-4809-26> and <doi:10.32614/RJ-2016-062> . Package also indicates which regressors may be the reason of collinearity among regressors.
Author: Imdad Ullah Muhammad [aut, cre]
(<https://orcid.org/0000-0002-1315-491X>),
Aslam Muhammad [aut, ctb]
Maintainer: Imdad Ullah Muhammad <mimdadasad@gmail.com>
Diff between mctest versions 1.2 dated 2018-02-25 and 1.2.5 dated 2019-11-10
DESCRIPTION | 32 +++++++++++++++------ MD5 | 26 ++++++++--------- NAMESPACE | 2 - R/imcdiag.R | 57 +++++++++++++++++++++++++++++++++----- R/mcdiag.R | 75 +++++++++++++++++++++++++++++--------------------- R/omcdiag.R | 2 - inst/CITATION | 24 +++++++++++++++- inst/NEWS.Rd | 8 +++++ man/eigp.Rd | 5 ++- man/imcdiag.Rd | 31 ++++++++++++++------ man/mc.plot.Rd | 2 - man/mctest-package.Rd | 6 ++-- man/mctest.Rd | 26 +++++++++++------ man/omcdiag.Rd | 6 ++-- 14 files changed, 212 insertions(+), 90 deletions(-)
Title: Interface to 'Container Instances', 'Docker Registry' and
'Kubernetes' in 'Azure'
Description: An interface to container functionality in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/overview/containers/>. Manage 'Azure Container Instance' (ACI), 'Azure Container Registry' (ACR) and 'Azure Kubernetes Service' (AKS) resources, push and pull images, and deploy services. On the client side, lightweight shells to the 'docker', 'kubectl' and 'helm' commandline tools are provided. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Bill Liang [ctb] (Assistance debugging MMLS on Kubernetes),
Ramkumar Chandrasekaran [ctb] (Original blog article on Dockerising
MMLS),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureContainers versions 1.1.1 dated 2019-10-17 and 1.1.2 dated 2019-11-10
DESCRIPTION | 9 MD5 | 14 - NEWS.md | 4 R/az_kubernetes_service.R | 23 + inst/doc/vig01_plumber_deploy.html | 284 ++++++++++++------------ inst/doc/vig02_mmls_deploy.html | 426 ++++++++++++++++++------------------- inst/doc/vig03_rbac.html | 240 ++++++++++---------- man/aks.Rd | 13 - 8 files changed, 512 insertions(+), 501 deletions(-)
More information about AzureContainers at CRAN
Permanent link
Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM,
time series, PCA families, clustering and survival analysis. The package offers
a single plotting interface for these analysis results and plots in a unified
style using 'ggplot2'.
Author: Masaaki Horikoshi [aut],
Yuan Tang [aut, cre] (<https://orcid.org/0000-0001-5243-233X>),
Austin Dickey [ctb],
Matthias Grenié [ctb],
Ryan Thompson [ctb],
Luciano Selzer [ctb],
Dario Strbenac [ctb],
Kirill Voronin [ctb]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between ggfortify versions 0.4.7 dated 2019-05-26 and 0.4.8 dated 2019-11-10
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ inst/doc/basics.html | 8 ++++---- inst/doc/plot_dist.html | 4 ++-- inst/doc/plot_map.html | 10 +++++----- inst/doc/plot_pca.html | 26 +++++++++++++------------- inst/doc/plot_surv.html | 10 +++++----- inst/doc/plot_ts.html | 12 ++++++------ tests/testthat/Rplots.pdf |binary tests/testthat/test-surv.R | 8 +++----- 11 files changed, 56 insertions(+), 54 deletions(-)
Title: A Suite of R Functions Implementing Spline Smoothing Techniques
Description: A comprehensive package for fitting various
non-parametric/semi-parametric linear/nonlinear fixed/mixed
smoothing spline models.
Author: Yuedong Wang [aut, cre],
Chunlei Ke [aut],
Cleve Moler [cph]
Maintainer: Yuedong Wang <yuedong@pstat.ucsb.edu>
Diff between assist versions 3.1.5 dated 2019-06-15 and 3.1.6 dated 2019-11-10
DESCRIPTION | 24 ++++++++++++++++-------- MD5 | 2 +- 2 files changed, 17 insertions(+), 9 deletions(-)
Title: MultiDimensional Feature Selection
Description: Functions for MultiDimensional Feature Selection (MDFS):
calculating multidimensional information gains, scoring variables,
finding important variables, plotting selection results.
This package includes an optional CUDA implementation that speeds up
information gain calculation using NVIDIA GPGPUs.
Author: Radosław Piliszek [aut, cre],
Krzysztof Mnich [aut],
Paweł Tabaszewski [aut],
Szymon Migacz [aut],
Andrzej Sułecki [aut],
Witold Remigiusz Rudnicki [aut]
Maintainer: Radosław Piliszek <r.piliszek@uwb.edu.pl>
Diff between MDFS versions 1.0.4 dated 2019-10-27 and 1.0.5 dated 2019-11-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 6 +++++- src/Makevars.cuda.in | 6 ++++-- 4 files changed, 16 insertions(+), 10 deletions(-)
Title: UK National River Flow Archive Data from R
Description: Utility functions to retrieve data from the UK National River Flow Archive (<http://nrfa.ceh.ac.uk/>, terms and conditions: <http://nrfa.ceh.ac.uk/costs-terms-and-conditions>). The package contains R wrappers to the UK NRFA data temporary-API. There are functions to retrieve stations falling in a bounding box, to generate a map and extracting time series and general information.
Author: Claudia Vitolo [aut, cre] (<https://orcid.org/0000-0002-4252-1176>),
Matthew Fry [ctb] (Matthew supervised the unofficial API integration.),
Wouter Buytaert [ctb] (This package is part of Claudia Vitolo's PhD
work and Wouter is the supervisor.),
Michael Spencer [ctb] (Michael updated the function osg_parse to work
with grid references of different lengths.),
Tobias Gauster [ctb] (Tobias improved the function osg_parse
introducing vectorisation),
Ilaria Prosdocimi [ctb] (Ilaria contributed to the adaptation of the
package to the 2019 API)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>
Diff between rnrfa versions 2.0 dated 2019-04-15 and 2.0.1 dated 2019-11-10
rnrfa-2.0.1/rnrfa/DESCRIPTION | 15 rnrfa-2.0.1/rnrfa/MD5 | 31 - rnrfa-2.0.1/rnrfa/NEWS.md | 11 rnrfa-2.0.1/rnrfa/R/catalogue.R | 10 rnrfa-2.0.1/rnrfa/R/cmr.R | 2 rnrfa-2.0.1/rnrfa/R/convert_flow.R | 2 rnrfa-2.0.1/rnrfa/R/gdf.R | 2 rnrfa-2.0.1/rnrfa/R/get_ts.R | 8 rnrfa-2.0.1/rnrfa/R/internals.R | 8 rnrfa-2.0.1/rnrfa/R/osg_parse.R | 14 rnrfa-2.0.1/rnrfa/R/plot_rain_flow.R | 6 rnrfa-2.0.1/rnrfa/R/plot_trend.R | 2 rnrfa-2.0.1/rnrfa/R/seasonal_averages.R | 10 rnrfa-2.0.1/rnrfa/README.md | 2 rnrfa-2.0.1/rnrfa/inst/doc/rnrfa-vignette.html | 512 +++++++++++++++------- rnrfa-2.0.1/rnrfa/tests/testthat/test-osg_parse.R | 67 -- rnrfa-2.0/rnrfa/R/zzz.R |only 17 files changed, 432 insertions(+), 270 deletions(-)
Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
See Wang et al. (2014) <doi:10.1002/sim.6314>, Wang et al. (2015) <doi:10.1002/bimj.201400143>,
Wang et al. (2016) <doi:10.1177/0962280214530608>.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang <wangz1@uthscsa.edu>
Diff between mpath versions 0.3-19 dated 2019-11-07 and 0.3-20 dated 2019-11-10
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- NAMESPACE | 3 +-- NEWS | 8 ++++++++ R/nonzeroCoef.R |only R/plotCoef.R |only inst/COPYRIGHTS | 9 +++++++++ inst/doc/brcancer.pdf |binary inst/doc/german.pdf |binary inst/doc/kkt.pdf |binary 10 files changed, 32 insertions(+), 14 deletions(-)
Title: Visualizations of High-Dimensional Data
Description: Gives access to data visualisation methods that are relevant from the data scientist's point of view. The flagship idea of 'DataVisualizations' is the mirrored density plot (MD-plot) for either classified or non-classified multivariate data presented in Thrun et al. (2019) <arXiv:1908.06081>. The MD-plot outperforms the box-and-whisker diagram (box plot) and bean plot. Furthermore, a collection of various visualization methods for univariate data is provided. In the case of exploratory data analysis, 'DataVisualizations' makes it possible to inspect the distribution of each feature of a dataset visually through a combination of four methods. One of these methods is the Pareto density estimation (PDE) of the probability density function (pdf). Additionally, visualizations of the distribution of distances using PDE, the scatter-density plot using PDE for two variables as well as the Shepard density plot and the Bland-Altman plot are presented here. Pertaining to classified high-dimensional data, a number of visualizations are described, such as f.ex. the heat map and silhouette plot. A political map of the world or Germany can be visualized with the additional information defined by a classification of countries or regions. By extending the political map further, an uncomplicated function for a Choropleth map can be used which is useful for measurements across a geographic area. For categorical features, the Pie charts, slope charts and fan plots, improved by the ABC analysis, become usable. More detailed explanations are found in the book by Thrun, M.C.: "Projection-Based Clustering through Self-Organization and Swarm Intelligence" (2018) <doi:10.1007/978-3-658-20540-9>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Felix Pape [aut, rev],
Onno Hansen-Goos [ctr, ctb],
Dirk Eddelbuettel [ctr],
Alfred Ultsch [dtc, ctb]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DataVisualizations versions 1.1.8 dated 2019-08-20 and 1.1.9 dated 2019-11-10
DESCRIPTION | 18 - MD5 | 73 +++--- NAMESPACE | 1 R/ABCbarplot.R | 4 R/ClassMDplot.R | 44 +++- R/JitterUniqueValues.R |only R/MDplot.R | 58 +++-- R/MDplot4multiplevectors.R | 87 +++++-- R/PDEscatter.R | 39 ++- R/ParetoDensityEstimationV2.R | 58 ++++- R/ParetoRadiusV2.R | 10 R/Pixelmatrix.R | 18 + R/PlotMissingvalues.R | 12 - R/RcppExports.R | 4 R/Silhouetteplot.R | 4 R/checkCls.R | 32 +- R/stat_pde_density.R | 8 R/zplot.R | 36 ++- build/partial.rdb |binary data/AccountingInformation_PrimeStandard_Q3_2019.rda |only inst/NEWS | 27 ++ inst/doc/DataVisualizations.R | 20 + inst/doc/DataVisualizations.Rmd | 28 +- inst/doc/DataVisualizations.html | 208 +++++++++---------- man/ABCbarplot.Rd | 2 man/AccountingInformation_PrimeStandard_Q3_2019.Rd |only man/ClassBoxPlot.Rd | 7 man/ClassMDplot.Rd | 44 ++-- man/ClassPDEplot.Rd | 7 man/ClassPDEplotMaxLikeli.Rd | 7 man/JitterUniqueValues.Rd |only man/MDplot.Rd | 32 ++ man/MDplot4multiplevectors.Rd | 41 ++- man/PDEscatter.Rd | 9 man/ParetoDensityEstimationV2.Rd | 120 +++++----- man/ParetoRadiusV2.Rd | 4 man/PlotMissingvalues.Rd | 11 - src/RcppExports.cpp | 13 + src/c_quantile.cpp |only vignettes/DataVisualizations.Rmd | 28 +- 40 files changed, 701 insertions(+), 413 deletions(-)
More information about DataVisualizations at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-09 0.0.2
2019-11-01 0.0.1
Title: Model Based Phylogenetic Analysis
Description: A collection of functions to do model-based phylogenetic analysis.
It includes functions to calculate community phylogenetic diversity,
to estimate correlations among functional traits while accounting for
phylogenetic relationships, and to fit phylogenetic generalized linear
mixed models. The Bayesian phylogenetic generalized linear mixed models
are fitted with the 'INLA' package (<http://www.r-inla.org>).
Author: Anthony Ives [aut],
Russell Dinnage [aut] (<https://orcid.org/0000-0003-0846-2819>),
Lucas A. Nell [aut] (<https://orcid.org/0000-0003-3209-0517>),
Matthew Helmus [aut],
Daijiang Li [aut, cre] (<https://orcid.org/0000-0002-0925-3421>)
Maintainer: Daijiang Li <daijianglee@gmail.com>
Diff between phyr versions 1.0.0 dated 2019-10-24 and 1.0.1 dated 2019-11-10
phyr-1.0.0/phyr/R/binaryPGLMM.R |only phyr-1.0.0/phyr/man/binaryPGLMM_ape.Rd |only phyr-1.0.1/phyr/DESCRIPTION | 6 phyr-1.0.1/phyr/MD5 | 65 +- phyr-1.0.1/phyr/NAMESPACE | 5 phyr-1.0.1/phyr/R/RcppExports.R | 190 ------ phyr-1.0.1/phyr/R/cor_phylo.R | 2 phyr-1.0.1/phyr/R/pcd.R | 2 phyr-1.0.1/phyr/R/pglmm-plot.R | 2 phyr-1.0.1/phyr/R/pglmm-utils.R | 2 phyr-1.0.1/phyr/R/pglmm.R | 557 +++++++++----------- phyr-1.0.1/phyr/R/pglmm.compare.R |only phyr-1.0.1/phyr/R/psv.R | 8 phyr-1.0.1/phyr/README.md | 11 phyr-1.0.1/phyr/inst/doc/benchmarks.html | 4 phyr-1.0.1/phyr/inst/doc/pglmm.html | 4 phyr-1.0.1/phyr/inst/doc/plot-re.Rmd | 2 phyr-1.0.1/phyr/inst/doc/plot-re.html | 151 ++--- phyr-1.0.1/phyr/man/cor_phylo.Rd | 2 phyr-1.0.1/phyr/man/get_design_matrix_pglmm.Rd | 56 -- phyr-1.0.1/phyr/man/pcd_pred.Rd | 2 phyr-1.0.1/phyr/man/pglmm-matrix-structure.Rd | 101 +-- phyr-1.0.1/phyr/man/pglmm-plot-re.Rd | 130 ++-- phyr-1.0.1/phyr/man/pglmm-profile-LRT.Rd | 2 phyr-1.0.1/phyr/man/pglmm.Rd | 548 +++++++++---------- phyr-1.0.1/phyr/man/pglmm.compare.Rd |only phyr-1.0.1/phyr/man/prep_dat_pglmm.Rd | 105 +-- phyr-1.0.1/phyr/man/print.pglmm.compare.Rd |only phyr-1.0.1/phyr/man/psd.Rd | 8 phyr-1.0.1/phyr/man/summary.pglmm.compare.Rd |only phyr-1.0.1/phyr/src/RcppExports.cpp | 87 --- phyr-1.0.1/phyr/src/binaryPGLMM.cpp | 338 ++++++------ phyr-1.0.1/phyr/src/cor_phylo.cpp | 542 +++++++------------ phyr-1.0.1/phyr/src/cor_phylo.h | 145 +++-- phyr-1.0.1/phyr/tests/testthat/test-cor_phylo.R | 93 +-- phyr-1.0.1/phyr/tests/testthat/test-pglmm.compare.R |only phyr-1.0.1/phyr/vignettes/plot-re.Rmd | 2 37 files changed, 1370 insertions(+), 1802 deletions(-)
Title: Multichannel Wavelet Deconvolution with Additive Long Memory
Noise
Description: Computes the Wavelet deconvolution estimate of a common signal
present in multiple channels that have possible different levels of blur
and long memory additive error, see Kulik, Sapatinas and Wishart (2015), <doi:10.1016/j.acha.2014.04.004>.
Author: Justin Rory Wishart [aut, cre]
(<https://orcid.org/0000-0002-8235-1845>)
Maintainer: Justin Rory Wishart <justin.r.wishart@gmail.com>
Diff between mwaved versions 1.1.6 dated 2019-03-22 and 1.1.7 dated 2019-11-10
DESCRIPTION | 16 MD5 | 18 NEWS | 168 +++--- R/functions.R | 1244 +++++++++++++++++++++++------------------------ README.md | 2 TODO | 10 build/vignette.rds |binary inst/doc/mWaveD.Rmd | 1332 +++++++++++++++++++++++++-------------------------- inst/doc/mWaveD.html | 65 +- vignettes/mWaveD.Rmd | 1332 +++++++++++++++++++++++++-------------------------- 10 files changed, 2095 insertions(+), 2092 deletions(-)
Title: Invariant Causal Prediction
Description: Confidence intervals for causal effects, using data collected in different experimental or environmental conditions. Hidden variables can be included in the model with a more experimental version.
Author: Nicolai Meinshausen
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Diff between InvariantCausalPrediction versions 0.7-2 dated 2018-10-08 and 0.8 dated 2019-11-10
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 4 +++- 3 files changed, 9 insertions(+), 7 deletions(-)
More information about InvariantCausalPrediction at CRAN
Permanent link
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data
sets, regression models, and more. The code to create the tables is
concise and highly customizable. Data frames can be summarized with
any function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers. The package is enhanced when the 'gt' package is installed.
Use this code to install: 'remotes::install_github("rstudio/gt")'.
Author: Daniel D. Sjoberg [aut, cre] (<https://orcid.org/0000-0003-0862-2018>),
Margie Hannum [aut] (<https://orcid.org/0000-0002-2953-0449>),
Karissa Whiting [aut] (<https://orcid.org/0000-0002-4683-1868>),
Emily C. Zabor [aut] (<https://orcid.org/0000-0002-1402-4498>),
Michael Curry [ctb] (<https://orcid.org/0000-0002-0261-4044>),
Esther Drill [ctb] (<https://orcid.org/0000-0002-3315-4538>),
Jessica Flynn [ctb] (<https://orcid.org/0000-0001-8310-6684>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 1.2.1 dated 2019-08-20 and 1.2.2 dated 2019-11-10
gtsummary-1.2.1/gtsummary/R/compat-lifecycle.R |only gtsummary-1.2.1/gtsummary/tests/testthat/test-assign_dichotomous_value-.R |only gtsummary-1.2.2/gtsummary/DESCRIPTION | 22 gtsummary-1.2.2/gtsummary/MD5 | 224 +-- gtsummary-1.2.2/gtsummary/NAMESPACE | 10 gtsummary-1.2.2/gtsummary/NEWS.md | 50 gtsummary-1.2.2/gtsummary/R/add_global_p.R | 56 gtsummary-1.2.2/gtsummary/R/add_n.R | 102 + gtsummary-1.2.2/gtsummary/R/add_p.R | 53 gtsummary-1.2.2/gtsummary/R/add_q.R | 60 gtsummary-1.2.2/gtsummary/R/add_stat_label.R | 12 gtsummary-1.2.2/gtsummary/R/as_gt.R | 7 gtsummary-1.2.2/gtsummary/R/as_kable.R | 4 gtsummary-1.2.2/gtsummary/R/as_tibble.R |only gtsummary-1.2.2/gtsummary/R/deprecated.R | 59 gtsummary-1.2.2/gtsummary/R/gtsummary-package.R | 8 gtsummary-1.2.2/gtsummary/R/print.R | 2 gtsummary-1.2.2/gtsummary/R/reexport.R | 4 gtsummary-1.2.2/gtsummary/R/tbl_merge.R | 329 ++-- gtsummary-1.2.2/gtsummary/R/tbl_regression.R | 217 +-- gtsummary-1.2.2/gtsummary/R/tbl_stack.R | 23 gtsummary-1.2.2/gtsummary/R/tbl_summary.R | 115 + gtsummary-1.2.2/gtsummary/R/tbl_survival.R | 1 gtsummary-1.2.2/gtsummary/R/tbl_uvregression.R | 93 - gtsummary-1.2.2/gtsummary/R/tidyselect_to_list.R | 129 - gtsummary-1.2.2/gtsummary/R/utils-add_p.R | 50 gtsummary-1.2.2/gtsummary/R/utils-table_headers.R | 64 gtsummary-1.2.2/gtsummary/R/utils-tbl_regression.R | 74 - gtsummary-1.2.2/gtsummary/R/utils-tbl_summary.R | 12 gtsummary-1.2.2/gtsummary/README.md | 25 gtsummary-1.2.2/gtsummary/build/gtsummary.pdf |only gtsummary-1.2.2/gtsummary/build/vignette.rds |binary gtsummary-1.2.2/gtsummary/inst/WORDLIST | 6 gtsummary-1.2.2/gtsummary/inst/doc/gallery.R |only gtsummary-1.2.2/gtsummary/inst/doc/gallery.Rmd |only gtsummary-1.2.2/gtsummary/inst/doc/gallery.html |only gtsummary-1.2.2/gtsummary/inst/doc/global_options.R |only gtsummary-1.2.2/gtsummary/inst/doc/global_options.Rmd |only gtsummary-1.2.2/gtsummary/inst/doc/global_options.html |only gtsummary-1.2.2/gtsummary/inst/doc/tbl_regression.R 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Title: Energy Decomposition Analysis
Description: Energy decomposition analysis for measuring contributions of components
and factors on energy or carbon emission changes, as described in
B.W. Ang (2005) <doi:10.1016/j.enpol.2003.10.010>. Includes Log Mean
Devisia Index method and multi-year energy decomposition analysis using
five methods. Please refer P. Wu (2019) <doi:10.1016/j.jclepro.2019.02.200>
to use the package.
Author: Yongze Song [aut, cre] (<https://orcid.org/0000-0003-3420-9622>),
Peng Wu [aut]
Maintainer: Yongze Song <yongze.song@postgrad.curtin.edu.au>
Diff between EDA versions 1.2 dated 2018-07-02 and 1.3 dated 2019-11-10
DESCRIPTION | 15 ++++----- MD5 | 22 ++++++------- R/EDA.R | 35 +++++++++++---------- R/LMDI.R | 24 ++++++++++++++ build/vignette.rds |binary data/factordata.rda |binary inst/CITATION | 11 ++++++ inst/doc/EDA.R | 6 +-- inst/doc/EDA.Rmd | 25 ++++++++++++--- inst/doc/EDA.html | 85 +++++++++++++++++++++++++++++++++++++--------------- man/EDA.Rd | 8 ++-- vignettes/EDA.Rmd | 25 ++++++++++++--- 12 files changed, 179 insertions(+), 77 deletions(-)
Title: Summarize CRAN Check Results in the Terminal
Description: The CRAN check results in your R terminal.
Author: Francois Michonneau [aut, cre],
Ben Bolker [ctb]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between foghorn versions 1.1.0 dated 2019-02-17 and 1.1.3 dated 2019-11-10
foghorn-1.1.0/foghorn/inst/doc/quick_start.R |only foghorn-1.1.0/foghorn/inst/doc/quick_start.Rmd |only foghorn-1.1.0/foghorn/inst/doc/quick_start.html |only foghorn-1.1.0/foghorn/vignettes/quick_start.Rmd |only foghorn-1.1.3/foghorn/DESCRIPTION | 29 +++++++----- foghorn-1.1.3/foghorn/MD5 | 30 ++++++------ foghorn-1.1.3/foghorn/NEWS.md | 20 ++++++++ foghorn-1.1.3/foghorn/R/cran_check_table.R | 2 foghorn-1.1.3/foghorn/R/cran_queue.R | 26 ++++++----- foghorn-1.1.3/foghorn/README.md | 52 +++++++++++----------- foghorn-1.1.3/foghorn/build/vignette.rds |binary foghorn-1.1.3/foghorn/inst/doc/foghorn.R |only foghorn-1.1.3/foghorn/inst/doc/foghorn.Rmd |only foghorn-1.1.3/foghorn/inst/doc/foghorn.html |only foghorn-1.1.3/foghorn/man/cran_details.Rd | 12 +++-- foghorn-1.1.3/foghorn/man/cran_incoming.Rd | 19 +++++--- foghorn-1.1.3/foghorn/man/cran_results.Rd | 9 ++- foghorn-1.1.3/foghorn/man/foghorn.Rd | 1 foghorn-1.1.3/foghorn/man/summary_cran_results.Rd | 12 +++-- foghorn-1.1.3/foghorn/vignettes/foghorn.Rmd |only 20 files changed, 129 insertions(+), 83 deletions(-)
Title: Diagnostic and Prognostic Meta-Analysis
Description: Meta-analysis of diagnostic and prognostic modeling studies. Summarize estimates of prognostic factors,
diagnostic test accuracy and prediction model performance. Validate, update and
combine published prediction models. Develop new prediction models with data from multiple studies.
Author: Thomas Debray [aut, cre] (<https://orcid.org/0000-0002-1790-2719>),
Valentijn de Jong [aut] (<https://orcid.org/0000-0001-9921-3468>)
Maintainer: Thomas Debray <thomas.debray@gmail.com>
Diff between metamisc versions 0.2.1 dated 2019-10-30 and 0.2.2 dated 2019-11-10
DESCRIPTION | 12 - MD5 | 64 +++--- NAMESPACE | 296 ++++++++++++++--------------- R/metapred_utils.R | 23 +- man/ccalc.Rd | 256 ++++++++++++------------- man/fat.Rd | 266 +++++++++++++------------- man/fitted.metapred.Rd | 76 +++---- man/forest.Rd | 48 ++-- man/forest.default.Rd | 126 ++++++------ man/forest.metapred.Rd | 88 ++++---- man/forest.mp.cv.val.Rd | 58 ++--- man/gen.Rd | 46 ++-- man/logLik.riley.Rd | 78 +++---- man/ma.Rd | 52 ++--- man/metamisc-package.Rd | 4 man/metapred.Rd | 260 +++++++++++++------------- man/oecalc.Rd | 208 ++++++++++---------- man/perf.Rd | 46 ++-- man/plot.fat.Rd | 98 ++++----- man/plot.mm_perf.Rd | 86 ++++---- man/plot.riley.Rd | 88 ++++---- man/plot.uvmeta.Rd | 96 ++++----- man/plot.valmeta.Rd | 98 ++++----- man/predict.riley.Rd | 56 ++--- man/recalibrate.Rd | 90 ++++----- man/riley.Rd | 270 +++++++++++++-------------- man/se.Rd | 58 ++--- man/stackedglm.Rd | 62 +++--- man/subset.metapred.Rd | 98 ++++----- man/summary.riley.Rd | 84 ++++---- man/summary.uvmeta.Rd | 68 +++--- man/uvmeta.Rd | 266 +++++++++++++------------- man/valmeta.Rd | 480 ++++++++++++++++++++++++------------------------ 33 files changed, 2003 insertions(+), 2002 deletions(-)
Title: Prediction of Therapeutic Success
Description: In personalized medicine, one wants to know, for a given patient and his or her outcome for a predictor (pre-treatment variable), how likely it is that a treatment will be more beneficial than an alternative treatment. This package allows for the quantification of the predictive causal association (i.e., the association between the predictor variable and the individual causal effect of the treatment) and related metrics. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between EffectTreat versions 0.4 dated 2018-09-19 and 1.0 dated 2019-11-10
DESCRIPTION | 7 +--- MD5 | 6 +-- NEWS | 2 - man/Min.Max.Multivar.PCA.Rd | 71 ++++++++++++++++++++++---------------------- 4 files changed, 43 insertions(+), 43 deletions(-)
Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by
the help of model performance, permutation variable importance (Fisher
et al. (2018) <arxiv:1801.01489>), ICE profiles, partial dependence
(Friedman J. H. (2001) <doi:10.1214/aos/1013203451>), accumulated
local effects (Apley D. W. (2016) <arXiv:1612.08468>), further effects
plots, overall interaction strength, and variable contribution
breakdown for single observations (Gosiewska and Biecek (2019)
<arxiv:1903.11420>). All tools are implemented to work with case
weights and allow for stratified analysis. Furthermore, multiple
flashlights can be combined and analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between flashlight versions 0.3.0 dated 2019-10-13 and 0.4.0 dated 2019-11-10
DESCRIPTION | 20 - MD5 | 44 ++-- NAMESPACE | 6 NEWS.md | 20 + R/grouped_stats.R | 21 + R/light_ice.R | 11 - R/light_importance.R | 57 +++-- R/light_interaction.R |only R/light_profile.R | 4 R/plot_counts.R | 15 - R/plot_light_ice.R | 2 R/plot_light_importance.R | 35 ++- README.md | 4 inst/doc/flashlight.R | 30 +- inst/doc/flashlight.Rmd | 56 +++-- inst/doc/flashlight.html | 456 ++++++++++++++++++++++--------------------- man/grouped_stats.Rd | 14 - man/light_ice.Rd | 5 man/light_importance.Rd | 17 + man/light_interaction.Rd |only man/light_profile.Rd | 5 man/plot.light_importance.Rd | 12 - man/plot_counts.Rd | 13 - vignettes/flashlight.Rmd | 56 +++-- 24 files changed, 527 insertions(+), 376 deletions(-)
Title: Estimate Correlations Between Repeatedly Measured Endpoints
(E.g., Reliability) Based on Linear Mixed-Effects Models
Description: In clinical practice and research settings in medicine and the behavioral sciences, it is often of interest to quantify the correlation of a continuous endpoint that was repeatedly measured (e.g., test-retest correlations, ICC, etc.). This package allows for estimating these correlations based on mixed-effects models. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Geert Molenberghs, Dieter Hilgers, & Nicole Heussen
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between CorrMixed versions 0.1-13 dated 2016-08-04 and 1.0 dated 2019-11-10
DESCRIPTION | 8 +++----- MD5 | 2 +- 2 files changed, 4 insertions(+), 6 deletions(-)
Title: Calculate Water Vapor Measures from Temperature and Dew Point
Description: Vapor pressure, relative humidity, absolute humidity, specific humidity, and mixing ratio are commonly used water vapor measures in meteorology. This R package provides functions for calculating saturation vapor pressure (hPa), partial water vapor pressure (Pa), relative humidity (%), absolute humidity (kg/m^3), specific humidity (kg/kg), and mixing ratio (kg/kg) from temperature (K) and dew point (K). Conversion functions between humidity measures are also provided.
Author: Jun Cai [aut, cre] (<https://orcid.org/0000-0001-9495-1226>)
Maintainer: Jun Cai <cai-j12@mails.tsinghua.edu.cn>
Diff between humidity versions 0.1.3 dated 2018-06-10 and 0.1.5 dated 2019-11-10
humidity-0.1.3/humidity/inst/doc/ivs-sh.R |only humidity-0.1.3/humidity/inst/doc/ivs-sh.Rmd |only humidity-0.1.3/humidity/inst/doc/ivs-sh.html |only humidity-0.1.3/humidity/vignettes/ivs-sh.Rmd |only humidity-0.1.5/humidity/DESCRIPTION | 17 +- humidity-0.1.5/humidity/MD5 | 32 ++-- humidity-0.1.5/humidity/NEWS.md | 42 ++++- humidity-0.1.5/humidity/R/data.R | 19 ++ humidity-0.1.5/humidity/README.md | 3 humidity-0.1.5/humidity/build/vignette.rds |binary humidity-0.1.5/humidity/data/ivs.rda |binary humidity-0.1.5/humidity/data/ivt.rda |only humidity-0.1.5/humidity/inst/doc/humidity-measures.Rmd | 4 humidity-0.1.5/humidity/inst/doc/humidity-measures.html | 114 +++++++++++++--- humidity-0.1.5/humidity/inst/doc/ivt_ivs-sh.R |only humidity-0.1.5/humidity/inst/doc/ivt_ivs-sh.Rmd |only humidity-0.1.5/humidity/inst/doc/ivt_ivs-sh.html |only humidity-0.1.5/humidity/man/ivs.Rd | 2 humidity-0.1.5/humidity/man/ivt.Rd |only humidity-0.1.5/humidity/vignettes/bibliography.bib | 68 ++++----- humidity-0.1.5/humidity/vignettes/humidity-measures.Rmd | 4 humidity-0.1.5/humidity/vignettes/ivt_ivs-sh.Rmd |only 22 files changed, 204 insertions(+), 101 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-10 0.7.6
2015-01-30 0.6
2014-10-24 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-10 0.29.1
2018-06-05 0.28.0
2017-07-08 0.26.0
2016-03-29 0.24.2
2016-03-19 0.24.1
2016-03-17 0.24.0
2015-06-26 0.22.0
2015-05-30 0.20
2015-03-31 0.18-1
2015-02-02 0.16.1
2014-09-27 0.11
2014-06-27 0.9
2013-08-26 0.8
2012-03-14 0.4
2012-02-27 0.3
Title: Fit Sparse Linear Regression Models via Nonconvex Optimization
Description: Efficient procedure for fitting regularization paths between L1 and L0, using the MC+ penalty of Zhang, C.H. (2010)<doi:10.1214/09-AOS729>. Implements the methodology described in Mazumder, Friedman and Hastie (2011) <DOI: 10.1198/jasa.2011.tm09738>. Sparsenet computes the regularization surface over both the family parameter and the tuning parameter by coordinate descent.
Author: Rahul Mazumder [aut, cre],
Trevor Hastie [aut, cre],
Jerome Friedman [aut, cre]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between sparsenet versions 1.3 dated 2019-02-11 and 1.4 dated 2019-11-10
DESCRIPTION | 10 +++++----- MD5 | 9 ++++++--- NAMESPACE | 5 +++-- R/lambda.interp.R |only R/nonzeroCoef.R |only R/plotCoef.R |only man/sparsenet-internal.Rd | 3 +++ 7 files changed, 17 insertions(+), 10 deletions(-)
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' for extracting text, fonts, attachments and
metadata from a PDF file. Also supports high quality rendering of PDF documents into
PNG, JPEG, TIFF format, or into raw bitmap vectors for further processing in R.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between pdftools versions 2.2 dated 2019-03-10 and 2.3 dated 2019-11-10
DESCRIPTION | 10 +++++----- MD5 | 24 +++++++++++++----------- NAMESPACE | 2 ++ NEWS | 4 ++++ R/ocr.R |only R/render.R | 15 ++++++++++----- R/tools.R | 2 +- configure | 11 +++++------ man/pdf_ocr.Rd |only man/pdf_render_page.Rd | 10 ++++++---- man/pdftools.Rd | 5 +++-- man/qpdf.Rd | 4 ++-- src/bindings.cpp | 6 ++++-- tests/testthat/test-render.R | 9 +++++++++ 14 files changed, 64 insertions(+), 38 deletions(-)
Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports
Cox-PH, proportional odds, and accelerated failure time models. Allows for
semi and fully parametric models (parametric only for accelerated failure
time models) and Bayesian parametric models. Includes functions for easy visual
diagnostics of model fits and imputation of censored data.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>
Diff between icenReg versions 2.0.10 dated 2019-05-29 and 2.0.11 dated 2019-11-10
DESCRIPTION | 10 ++-- MD5 | 28 +++++------ NEWS | 3 + R/ic_sp.R | 2 R/plottingFunctions.R | 109 ++++++++++++++++++++++++++++++++------------- R/referenceClasses.R | 15 ++++-- inst/doc/icenReg.pdf |binary man/ic_bayes.Rd | 6 +- man/ic_np.Rd | 4 - man/ic_sample.Rd | 3 - man/imputeCens.Rd | 3 - man/lines.icenReg_fit.Rd | 18 ++++++- man/plot.icenReg_fit.Rd | 5 +- man/predict.icenReg_fit.Rd | 4 - man/simIC_weib.Rd | 4 - 15 files changed, 145 insertions(+), 69 deletions(-)
Title: Functions for Analysis of fMRI Datasets Stored in the ANALYZE or
NIFTI Format
Description: Functions for I/O, visualisation and analysis of functional Magnetic Resonance Imaging (fMRI) datasets stored in the ANALYZE or NIFTI format. Note that the latest version of XQuartz seems to be necessary under MacOS.
Author: Pierre Lafaye De Micheaux [aut, cre],
Jonathan L Marchini [aut],
Cleve Moler [cph] (LAPACK/BLAS routines in src),
Jack Dongarra [cph] (LAPACK/BLAS routines in src),
Richard Hanson [cph] (LAPACK/BLAS routines in src),
Sven Hammarling [cph] (LAPACK/BLAS routines in src),
Jeremy Du Croz [cph] (LAPACK/BLAS routines in src)
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between AnalyzeFMRI versions 1.1-20 dated 2019-07-08 and 1.1-21 dated 2019-11-10
DESCRIPTION | 29 ++++++++++--- MD5 | 6 +- inst/HISTORY | 7 +++ src/analyzeFMRI.c | 114 +++++++++++++++++++++++++++--------------------------- 4 files changed, 92 insertions(+), 64 deletions(-)
Title: Toolkit for Data Analytics in Human Resources
Description: Transform and analyze workforce data in meaningful ways for human resources (HR) analytics.
Author: Dale Kube [aut, cre]
Maintainer: Dale Kube <dkube@uwalumni.com>
Diff between hR versions 0.2.0 dated 2019-06-23 and 0.2.1 dated 2019-11-10
DESCRIPTION | 11 +- MD5 | 18 ++-- R/hierarchyLong.R | 76 +++++++++++-------- R/hierarchyWide.R | 64 ++++++++-------- README.md | 3 build/vignette.rds |binary inst/doc/hR.Rmd | 2 inst/doc/hR.html | 6 - inst/workforcePlanApp/app.R | 172 ++++++++++++++++++++++++++------------------ vignettes/hR.Rmd | 2 10 files changed, 202 insertions(+), 152 deletions(-)