Title: SciViews - Main package
Description: Functions to install SciViews additions to R, and more
tools.
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between SciViews versions 0.9-13 dated 2018-01-06 and 0.9-13.1 dated 2019-11-16
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/panels.R | 2 ++ 3 files changed, 7 insertions(+), 5 deletions(-)
Title: Tensor Composition Analysis
Description: Tensor Composition Analysis (TCA) allows the deconvolution of two-dimensional data (features by observations) coming from a mixture of sources into a three-dimensional matrix of signals (features by observations by sources). TCA further allows to test the features in the data for different statistical relations with an outcome of interest while modeling source-specific effects (TCA regression); particularly, it allows to look for statistical relations between source-specific signals and an outcome. For example, TCA can deconvolve bulk tissue-level DNA methylation data (methylation sites by individuals) into a tensor of cell-type-specific methylation levels for each individual (methylation sites by individuals by cell types) and it allows to detect cell-type-specific relations (associations) with an outcome of interest. For more details see Rahmani et al. (2018) <DOI:10.1101/437368>.
Author: Elior Rahmani [aut, cre]
Maintainer: Elior Rahmani <elior.rahmani@gmail.com>
Diff between TCA versions 1.0.0 dated 2019-05-22 and 1.1.0 dated 2019-11-16
DESCRIPTION | 10 +-- MD5 | 44 +++++++------ NAMESPACE | 1 NEWS.md |only R/TCA.R | 146 ++++++++++++++++----------------------------- R/model_fit.R | 104 +++++++++++++++++++++----------- R/refactor.R |only R/utils.R | 26 +++++++- README.md | 9 +- build/vignette.rds |binary inst/CITATION | 10 +-- inst/doc/tca-vignette.R | 75 ----------------------- inst/doc/tca-vignette.Rmd | 62 +++++++++++-------- inst/doc/tca-vignette.html | 38 ++++++----- inst/extdata/config.yml | 1 man/refactor.Rd | 8 +- man/tca.Rd | 21 ++++-- man/tcareg.Rd | 12 ++- man/tcasub.Rd | 9 +- man/tensor.Rd | 10 +-- man/test_data.Rd | 6 + vignettes/figs/fig1.png |binary vignettes/figs/fig2.png |binary vignettes/tca-vignette.Rmd | 62 +++++++++++-------- 24 files changed, 326 insertions(+), 328 deletions(-)
Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the Econometrics & Technometrics.
Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, Malmquist productivity analysis, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, PhD
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 3.0 dated 2019-04-30 and 3.1 dated 2019-11-16
DJL-3.0/DJL/R/DJL-internal.R |only DJL-3.1/DJL/DESCRIPTION | 8 ++++---- DJL-3.1/DJL/MD5 | 11 +++++------ DJL-3.1/DJL/NEWS | 10 ++++++++++ DJL-3.1/DJL/R/target.arrival.dea.R | 2 +- DJL-3.1/DJL/R/target.arrival.hdf.R | 2 +- DJL-3.1/DJL/R/target.arrival.sf.R | 2 +- 7 files changed, 22 insertions(+), 13 deletions(-)
Title: Companion to Applied Regression Data Sets
Description: Datasets to Accompany J. Fox and S. Weisberg,
An R Companion to Applied Regression, Third Edition, Sage (2019).
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Brad Price [aut]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between carData versions 3.0-2 dated 2018-09-30 and 3.0-3 dated 2019-11-16
DESCRIPTION | 14 +-- MD5 | 204 +++++++++++++++++++++++----------------------- NEWS | 46 +++++----- data/AMSsurvey.rda |binary data/Adler.rda |binary data/Angell.rda |binary data/Anscombe.rda |binary data/Arrests.rda |binary data/BEPS.rda |binary data/Baumann.rda |binary data/Bfox.rda |binary data/Blackmore.rda |binary data/Burt.rda |binary data/CES11.rda |binary data/CanPop.rda |binary data/Chile.rda |binary data/Chirot.rda |binary data/Cowles.rda |binary data/Davis.rda |binary data/DavisThin.rda |binary data/Depredations.rda |binary data/Duncan.rda |binary data/Ericksen.rda |binary data/Florida.rda |binary data/Freedman.rda |binary data/Friendly.rda |binary data/GSSvocab.rda |binary data/Ginzberg.rda |binary data/Greene.rda |binary data/Guyer.rda |binary data/Hartnagel.rda |binary data/Highway1.rda |binary data/KosteckiDillon.rda |binary data/Leinhardt.rda |binary data/LoBD.rda |binary data/Mandel.rda |binary data/Migration.rda |binary data/Moore.rda |binary data/MplsDemo.rda |binary data/MplsStops.rda |binary data/Mroz.rda |binary data/OBrienKaiser.rda |binary data/Ornstein.rda |binary data/Pottery.rda |binary data/Prestige.rda |binary data/Quartet.rda |binary data/Robey.rda |binary data/Rossi.rda |binary data/SLID.rda |binary data/Sahlins.rda |binary data/Salaries.rda |binary data/Soils.rda |binary data/States.rda |binary data/TitanicSurvival.rda |binary data/Transact.rda |binary data/UN.rda |binary data/UN98.rda |binary data/USPop.rda |binary data/Vocab.rda |binary data/WVS.rda |binary data/WeightLoss.rda |binary data/Wells.rda |binary data/Womenlf.rda |binary data/Wong.rda |binary data/Wool.rda |binary man/AMSsurvey.Rd | 88 ++++++++++---------- man/Angell.Rd | 106 ++++++++++++------------ man/Anscombe.Rd | 92 ++++++++++---------- man/Baumann.Rd | 112 ++++++++++++------------- man/Bfox.Rd | 122 +++++++++++++-------------- man/CanPop.Rd | 90 ++++++++++---------- man/Chile.Rd | 140 +++++++++++++++---------------- man/Chirot.Rd | 102 +++++++++++------------ man/Davis.Rd | 122 +++++++++++++-------------- man/DavisThin.Rd | 78 ++++++++--------- man/Depredations.Rd | 64 +++++++------- man/Duncan.Rd | 98 +++++++++++----------- man/Ericksen.Rd | 134 +++++++++++++++--------------- man/Freedman.Rd | 92 ++++++++++---------- man/Friendly.Rd | 102 +++++++++++------------ man/Ginzberg.Rd | 106 ++++++++++++------------ man/Greene.Rd | 158 ++++++++++++++++++------------------ man/Guyer.Rd | 110 ++++++++++++------------- man/Hartnagel.Rd | 144 ++++++++++++++++---------------- man/Highway1.Rd | 134 +++++++++++++++--------------- man/Leinhardt.Rd | 134 +++++++++++++++--------------- man/Mandel.Rd | 88 ++++++++++---------- man/Migration.Rd | 206 +++++++++++++++++++++++------------------------ man/Moore.Rd | 122 +++++++++++++-------------- man/Mroz.Rd | 122 +++++++++++++-------------- man/Ornstein.Rd | 142 ++++++++++++++++---------------- man/Prestige.Rd | 128 ++++++++++++++--------------- man/Robey.Rd | 94 ++++++++++----------- man/SLID.Rd | 112 ++++++++++++------------- man/Sahlins.Rd | 84 +++++++++---------- man/Salaries.Rd | 73 ++++++++-------- man/Transact.Rd | 70 +++++++-------- man/UN.Rd | 100 +++++++++++----------- man/USPop.Rd | 76 ++++++++--------- man/Vocab.Rd | 92 ++++++++++---------- man/Womenlf.Rd | 120 +++++++++++++-------------- man/Wong.Rd | 96 +++++++++++---------- man/Wool.Rd | 80 +++++++++--------- 103 files changed, 2201 insertions(+), 2196 deletions(-)
Title: 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra
Library
Description: R and 'Eigen' integration using 'Rcpp'.
'Eigen' is a C++ template library for linear algebra: matrices, vectors,
numerical solvers and related algorithms. It supports dense and sparse
matrices on integer, floating point and complex numbers, decompositions of
such matrices, and solutions of linear systems. Its performance on many
algorithms is comparable with some of the best implementations based on
'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header
files from the 'Eigen' C++ template library (currently version 3.3.4). Thus
users do not need to install 'Eigen' itself in order to use 'RcppEigen'.
Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License
(version 2); earlier version were licensed under the GNU LGPL version 3 or
later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Douglas Bates, Dirk Eddelbuettel, Romain Francois, and Yixuan Qiu;
the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppEigen versions 0.3.3.5.0 dated 2018-11-24 and 0.3.3.7.0 dated 2019-11-16
RcppEigen-0.3.3.5.0/RcppEigen/R/unit.test.R |only RcppEigen-0.3.3.5.0/RcppEigen/inst/unitTests |only RcppEigen-0.3.3.5.0/RcppEigen/tests/doRUnit.R |only RcppEigen-0.3.3.7.0/RcppEigen/ChangeLog | 79 ++ RcppEigen-0.3.3.7.0/RcppEigen/DESCRIPTION | 10 RcppEigen-0.3.3.7.0/RcppEigen/MD5 | 165 ++-- RcppEigen-0.3.3.7.0/RcppEigen/R/RcppEigen.package.skeleton.R | 54 - RcppEigen-0.3.3.7.0/RcppEigen/README.md | 10 RcppEigen-0.3.3.7.0/RcppEigen/build/vignette.rds |binary RcppEigen-0.3.3.7.0/RcppEigen/inst/NEWS.Rd | 19 RcppEigen-0.3.3.7.0/RcppEigen/inst/doc/RcppEigen-Introduction.Rnw | 6 RcppEigen-0.3.3.7.0/RcppEigen/inst/doc/RcppEigen-Introduction.pdf |binary RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/CholmodSupport | 1 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/Core | 4 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Cholesky/LDLT.h | 3 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/Array.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/ConditionEstimator.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/MapBase.h | 6 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/MathFunctions.h | 36 - RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/Matrix.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/MatrixBase.h | 26 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/SolveTriangular.h | 3 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/arch/AVX/PacketMath.h | 13 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/arch/AVX512/PacketMath.h | 6 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/arch/CUDA/Half.h | 193 +++-- RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/arch/CUDA/PacketMathHalf.h | 3 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/arch/SSE/PacketMath.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h | 15 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/util/DisableStupidWarnings.h | 18 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/util/Macros.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/util/Memory.h | 10 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/util/Meta.h | 22 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h | 5 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/Jacobi/Jacobi.h | 13 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/SVD/SVDBase.h | 4 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/SparseCore/SparseMatrix.h | 6 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/SparseLU/SparseLU.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/Eigen/src/SuperLUSupport/SuperLUSupport.h | 4 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/Tensor | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/README.md | 349 +++++----- RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/Tensor.h | 8 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h | 6 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h | 9 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h | 4 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h | 28 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h | 12 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorSyclExprConstructor.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorSyclExtractAccessor.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorSyclExtractFunctors.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/Tensor/TensorSyclTuple.h | 5 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h | 7 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/CXX11/src/util/EmulateCXX11Meta.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/FFT | 5 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/MatrixFunctions | 15 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/OpenGLSupport | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h | 3 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/BVH/KdBVH.h | 1 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/IterativeSolvers/DGMRES.h | 1 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/IterativeSolvers/GMRES.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h | 7 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h | 6 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h | 12 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h | 4 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/Polynomials/PolynomialUtils.h | 8 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h | 2 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h | 14 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/SparseExtra/MarketIO.h | 18 RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h | 130 +-- RcppEigen-0.3.3.7.0/RcppEigen/inst/include/unsupported/Eigen/src/Splines/Spline.h | 5 RcppEigen-0.3.3.7.0/RcppEigen/inst/skeleton/rcppeigen_hello_world.cpp | 11 RcppEigen-0.3.3.7.0/RcppEigen/inst/tinytest |only RcppEigen-0.3.3.7.0/RcppEigen/tests/tinytest.R |only RcppEigen-0.3.3.7.0/RcppEigen/vignettes/RcppEigen-Introduction.Rnw | 6 78 files changed, 830 insertions(+), 616 deletions(-)
Title: Multiple Testing Procedures with Adaptation for Discrete Tests
Description: Multiple testing procedures described in the paper Döhler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" <doi:10.1214/18-EJS1441>. The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input a set of observed p-values and their discrete support under the null. A function to compute such p-values and supports for Fisher's exact tests is also provided, along with a wrapper allowing to apply discrete procedures directly from contingency tables.
Author: Sebastian Döhler [ctb],
Guillermo Durand [aut, ctb],
Florian Junge [aut, cre],
Etienne Roquain [ctb]
Maintainer: Florian Junge <florian.junge@h-da.de>
Diff between DiscreteFDR versions 1.3-2 dated 2019-11-13 and 1.3-3 dated 2019-11-16
DESCRIPTION | 8 MD5 | 20 +- R/RcppExports.R | 2 R/discreteBH_fun.R | 436 +++++++++++++++++++++++----------------------- R/plot_funs.R | 290 +++++++++++++++--------------- R/summary_funs.R | 173 +++++++++--------- R/support.R | 6 inst/doc/DiscreteFDR.html | 2 man/discrete.BH.Rd | 2 man/kernel.Rd | 2 src/kernel_fun.cpp | 13 - 11 files changed, 483 insertions(+), 471 deletions(-)
Title: Regression Helper Functions
Description: Methods for manipulating regression models and for describing these in a style adapted for medical journals.
Contains functions for generating an HTML table with crude and adjusted estimates, plotting hazard ratio, plotting model
estimates and confidence intervals using forest plots, extending this to comparing multiple models in a single forest plots.
In addition to the descriptive methods, there are add-ons for the robust covariance matrix provided by the 'sandwich'
package, a function for adding non-linearities to a model, and a wrapper around the 'Epi' package's Lexis() functions for
time-splitting a dataset when modeling non-proportional hazards in Cox regressions.
Author: Max Gordon [aut, cre],
Reinhard Seifert [aut] (Author of original plotHR)
Maintainer: Max Gordon <max@gforge.se>
Diff between Greg versions 1.3.1 dated 2019-09-21 and 1.3.2 dated 2019-11-16
DESCRIPTION | 10 MD5 | 72 ++--- R/private_functions.R | 14 + R/private_plotHR.R | 9 inst/doc/printCrudeAndAdjustedModel.R | 12 inst/doc/printCrudeAndAdjustedModel.html | 130 +++++----- inst/doc/timeSplitter.R | 34 +- inst/doc/timeSplitter.html | 402 +++++++++++++++---------------- man/SimpleRmsAnova.Rd | 10 man/addNonlinearity.Rd | 13 - man/caDescribeOpts.Rd | 13 - man/confint_robust.Rd | 10 man/forestplotCombineRegrObj.Rd | 21 + man/forestplotRegrObj.Rd | 19 + man/getCrudeAndAdjustedModelData.Rd | 14 - man/getModelData4Forestplot.Rd | 9 man/plotHR.Rd | 37 ++ man/prCaAddRefAndStat.Rd | 37 +- man/prCaAddReference.Rd | 34 +- man/prCaAddUserReferences.Rd | 32 +- man/prCaGetImputationCols.Rd | 23 - man/prCaGetRowname.Rd | 23 - man/prCaGetVnStats.Rd | 34 +- man/prCaPrepareCrudeAndAdjusted.Rd | 23 - man/prCaReorder.Rd | 23 - man/prCaReorderReferenceDescribe.Rd | 39 +-- man/prCaSelectAndOrderVars.Rd | 22 - man/prCaSetRownames.Rd | 23 - man/prGetModelData.Rd | 7 man/prGetModelVariables.Rd | 8 man/prGetStatistics.Rd | 17 + man/prNlChooseDf.Rd | 13 - man/prPrintCAstring.Rd | 6 man/printCrudeAndAdjustedModel.Rd | 53 ++-- man/timeSplitter.Rd | 11 tests/testthat/Rplots.pdf |binary tests/testthat/test-plotHR.R | 32 +- 37 files changed, 740 insertions(+), 549 deletions(-)
Title: Automatic Description of Factorial Analysis
Description: Brings a set of tools to help and automatically realise the description of principal component analyses (from 'FactoMineR' functions). Detection of existing outliers, identification of the informative components, graphical views and dimensions description are performed threw dedicated functions. The Investigate() function performs all these functions in one, and returns the result as a report document (Word, PDF or HTML).
Author: Simon Thuleau, Francois Husson
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between FactoInvestigate versions 1.4 dated 2019-07-03 and 1.5 dated 2019-11-16
DESCRIPTION | 14 MD5 | 39 +- NAMESPACE | 1 R/Investigate.R | 107 +++---- R/createRmd.R | 6 R/factoGraph.R | 21 - R/graphCA.R | 54 +-- R/graphHab.R | 57 ---- R/graphInd.R | 46 +-- R/graphVar.R | 36 +- R/inertiaDistrib.R | 16 - R/readRmd.R | 8 build/partial.rdb |binary inst/po/fr/LC_MESSAGES/R-FactoInvestigate.mo |binary man/Investigate.Rd | 12 man/factoGraph.Rd | 13 man/graphCA.Rd | 6 man/graphInd.Rd | 6 man/graphVar.Rd | 6 po/R-fr.mo |only po/R-fr.po | 384 +++++++-------------------- 21 files changed, 329 insertions(+), 503 deletions(-)
More information about FactoInvestigate at CRAN
Permanent link
Title: Hierarchical Multiple Imputation
Description: Runs single level and multilevel imputation models. The user just has to pass the data to the main function and, optionally, his analysis model. Basically the package then translates this analysis model into commands to impute the data according to it with functions from 'mice', 'MCMCglmm' or routines build for this package.
Author: Matthias Speidel [aut, cre] (Munich, Germany),
Joerg Drechsler [aut] (Institute for Employment Research, Nuremberg,
Germany),
Shahab Jolani [aut] (Maastricht University, Maastricht, The
Netherlands)
Maintainer: Matthias Speidel <matthias.speidel@googlemail.com>
Diff between hmi versions 0.9.16 dated 2019-06-23 and 0.9.17 dated 2019-11-16
hmi-0.9.16/hmi/man/ceiling.Rd |only hmi-0.9.16/hmi/man/exp.Rd |only hmi-0.9.16/hmi/man/floor.Rd |only hmi-0.9.16/hmi/man/interval-modulo.Rd |only hmi-0.9.16/hmi/man/log.Rd |only hmi-0.9.16/hmi/man/round.Rd |only hmi-0.9.16/hmi/man/sqrt.Rd |only hmi-0.9.17/hmi/DESCRIPTION | 10 hmi-0.9.17/hmi/MD5 | 167 ++++++------- hmi-0.9.17/hmi/NAMESPACE | 8 hmi-0.9.17/hmi/R/hmi_imp_binary_multi.R | 4 hmi-0.9.17/hmi/R/hmi_imp_binary_single.R | 6 hmi-0.9.17/hmi/R/hmi_imp_cat_single.R | 2 hmi-0.9.17/hmi/R/hmi_imp_catordered_single.R | 2 hmi-0.9.17/hmi/R/hmi_imp_cont_single.R | 2 hmi-0.9.17/hmi/R/hmi_smallfunctions.R | 67 +---- hmi-0.9.17/hmi/build/vignette.rds |binary hmi-0.9.17/hmi/inst/doc/myvignette.R | 8 hmi-0.9.17/hmi/inst/doc/myvignette.Rmd | 2 hmi-0.9.17/hmi/inst/doc/myvignette.html | 34 +- hmi-0.9.17/hmi/man/Gcsemv.Rd | 68 ++--- hmi-0.9.17/hmi/man/Mode.Rd | 40 +-- hmi-0.9.17/hmi/man/as.data.frame.interval.Rd | 42 +-- hmi-0.9.17/hmi/man/as.interval.Rd | 54 ++-- hmi-0.9.17/hmi/man/ceiling.interval.Rd |only hmi-0.9.17/hmi/man/center_interval.Rd | 36 +-- hmi-0.9.17/hmi/man/chaincheck.Rd | 98 ++++---- hmi-0.9.17/hmi/man/cleanup.Rd | 44 +-- hmi-0.9.17/hmi/man/contributions4intervals.Rd | 54 ++-- hmi-0.9.17/hmi/man/decompose_interval.Rd | 74 +++--- hmi-0.9.17/hmi/man/doubleintegral.Rd | 55 ++-- hmi-0.9.17/hmi/man/exp.interval.Rd |only hmi-0.9.17/hmi/man/extract_varnames.Rd | 68 +++-- hmi-0.9.17/hmi/man/factors.Rd | 40 +-- hmi-0.9.17/hmi/man/fixed_intercept_check.Rd | 42 +-- hmi-0.9.17/hmi/man/floor.interval.Rd |only hmi-0.9.17/hmi/man/generate_interval.Rd | 46 +-- hmi-0.9.17/hmi/man/get_type.Rd | 77 +++--- hmi-0.9.17/hmi/man/head.interval.Rd | 30 +- hmi-0.9.17/hmi/man/hmi.Rd | 215 +++++++++--------- hmi-0.9.17/hmi/man/hmi_pool.Rd | 120 +++++----- hmi-0.9.17/hmi/man/idf2interval.Rd | 34 +- hmi-0.9.17/hmi/man/imp_binary_multi.Rd | 89 ++++--- hmi-0.9.17/hmi/man/imp_binary_single.Rd | 48 ++-- hmi-0.9.17/hmi/man/imp_cat_multi.Rd | 117 +++++---- hmi-0.9.17/hmi/man/imp_cat_single.Rd | 56 ++-- hmi-0.9.17/hmi/man/imp_cont_multi.Rd | 89 ++++--- hmi-0.9.17/hmi/man/imp_cont_single.Rd | 48 ++-- hmi-0.9.17/hmi/man/imp_count_multi.Rd | 89 ++++--- hmi-0.9.17/hmi/man/imp_count_single.Rd | 79 +++--- hmi-0.9.17/hmi/man/imp_interval.Rd | 64 ++--- hmi-0.9.17/hmi/man/imp_orderedcat_multi.Rd | 89 ++++--- hmi-0.9.17/hmi/man/imp_orderedcat_single.Rd | 50 ++-- hmi-0.9.17/hmi/man/imp_roundedcont.Rd | 76 +++--- hmi-0.9.17/hmi/man/imp_semicont_multi.Rd | 100 ++++---- hmi-0.9.17/hmi/man/imp_semicont_single.Rd | 59 ++-- hmi-0.9.17/hmi/man/imputationcycle.Rd | 163 +++++++------ hmi-0.9.17/hmi/man/interval-add.Rd | 36 +-- hmi-0.9.17/hmi/man/interval-divide.Rd | 36 +-- hmi-0.9.17/hmi/man/interval-multiply.Rd | 36 +-- hmi-0.9.17/hmi/man/interval-power.Rd | 36 +-- hmi-0.9.17/hmi/man/interval-subtract.Rd | 36 +-- hmi-0.9.17/hmi/man/interval2idf.Rd | 32 +- hmi-0.9.17/hmi/man/is.na.interval.Rd | 36 +-- hmi-0.9.17/hmi/man/is_interval.Rd | 34 +- hmi-0.9.17/hmi/man/list_of_rounding_degrees_maker.Rd | 44 +-- hmi-0.9.17/hmi/man/list_of_rounding_formulas_maker.Rd | 48 ++-- hmi-0.9.17/hmi/man/list_of_spikes_maker.Rd | 40 +-- hmi-0.9.17/hmi/man/list_of_types_maker.Rd | 52 ++-- hmi-0.9.17/hmi/man/log.interval.Rd |only hmi-0.9.17/hmi/man/negloglik.Rd | 145 ++++++------ hmi-0.9.17/hmi/man/negloglik2_intervalsonly.Rd | 79 +++--- hmi-0.9.17/hmi/man/nhanes_imp.Rd | 102 ++++---- hmi-0.9.17/hmi/man/nhanes_mod.Rd | 108 ++++----- hmi-0.9.17/hmi/man/nhanes_sub.Rd | 122 +++++----- hmi-0.9.17/hmi/man/pbivnormX.Rd | 44 +-- hmi-0.9.17/hmi/man/plot.interval.Rd | 107 ++++---- hmi-0.9.17/hmi/man/random_intercept_check.Rd | 42 +-- hmi-0.9.17/hmi/man/round.interval.Rd |only hmi-0.9.17/hmi/man/sample_imp.Rd | 44 +-- hmi-0.9.17/hmi/man/sampler.Rd | 52 ++-- hmi-0.9.17/hmi/man/sna_interval.Rd | 46 +-- hmi-0.9.17/hmi/man/split_interval.Rd | 36 +-- hmi-0.9.17/hmi/man/sqrt.interval.Rd |only hmi-0.9.17/hmi/man/stand.Rd | 34 +- hmi-0.9.17/hmi/man/sub-.interval.Rd | 30 +- hmi-0.9.17/hmi/man/subset-.interval.Rd | 34 +- hmi-0.9.17/hmi/man/suggest_rounding_degrees.Rd | 38 +-- hmi-0.9.17/hmi/man/table.Rd | 66 ++--- hmi-0.9.17/hmi/man/tail.interval.Rd | 30 +- hmi-0.9.17/hmi/vignettes/myvignette.Rmd | 2 91 files changed, 2246 insertions(+), 2146 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-27 0.2
2017-09-26 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-21 0.3-3
2014-01-17 0.3-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-10 0.0.5
2018-08-21 0.0.3
2018-06-19 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-13 1.1.1
2018-12-13 1.1.0
2018-09-20 1.0.3
2018-05-30 1.0.2
2018-05-29 1.0.1
2018-05-01 0.1.7
2018-03-15 0.1.5
2018-03-07 0.1.4
2018-02-12 0.1.3
2018-02-11 0.1.2
2018-01-30 0.1.1
2018-01-14 0.1.0
Title: New Plots Based on 'ggplot2' and Functions to Create Regular
Shapes
Description: An extension to 'ggplot2' with miscellaneous functions. It contains
two groups of functions: Functions in the first group draw 'ggplot2' - based plots: gg_shading_bar() draws barplot
with shading colors in each bar. geom_rect_cm(), geom_circle_cm() and geom_ellipse_cm() draw rectangles, circles
and ellipses with centimeter as their unit. Thus their sizes do not change when the coordinate system or the aspect ratio
changes. annotation_transparent_text() draws labels with transparent texts. annotation_shading_polygon() draws irregular
polygons with shading colors. Functions in the second group generate coordinates for regular shapes and make linear transformations.
Author: Jiang Wu [aut, cre] (from Capital Normal University)
Maintainer: Jiang Wu <textidea@sina.com>
Diff between plothelper versions 0.1.4 dated 2019-08-01 and 0.1.5 dated 2019-11-16
DESCRIPTION | 8 ++-- MD5 | 62 +++++++++++++++++++++++-------------- NAMESPACE | 9 +++++ R/ABCxy.R | 2 - R/ANYxy.R | 6 +-- R/annotation_shading_polygon.R | 5 ++ R/annotation_transparent_text.R | 14 +++++--- R/ellipsexy.R | 2 - R/enlarge_raster.R | 17 +++++----- R/geom_multi_raster.R |only R/geom_shading_bar.R |only R/get_click_color.R |only R/gg_shading_bar.R | 11 ++++-- R/image_col_numeric.R |only R/image_keep_color.R |only R/image_modify_hsv.R |only R/image_modify_rgb.R |only R/image_modify_rgb_v.R |only R/rectxy.R | 2 - R/rotatexy.R | 2 - R/shading_raster.R |only R/showcolor.R | 2 - R/stretchxy.R | 2 - man/ABCxy.Rd | 2 - man/annotation_transparent_text.Rd | 18 +++++++--- man/ellipsexy.Rd | 2 - man/enlarge_raster.Rd | 8 +++- man/geom_multi_raster.Rd |only man/geom_shading_bar.Rd |only man/get_click_color.Rd |only man/gg_shading_bar.Rd | 6 ++- man/image_col_numeric.Rd |only man/image_keep_color.Rd |only man/image_modify_hsv.Rd |only man/image_modify_rgb.Rd |only man/image_modify_rgb_v.Rd |only man/rectxy.Rd | 2 - man/rotatexy.Rd | 2 - man/shading_raster.Rd |only man/showcolor.Rd | 2 - man/stretchxy.Rd | 2 - 41 files changed, 121 insertions(+), 67 deletions(-)
Title: Working Examples for Reproducible Research Documents
Description: Templates, guides, and scripts for
writing documents in 'LaTeX' and 'R markdown' to produce
guides, slides, and reports. Special care is taken to
illustrate use of templates and customization opportunities.
Challenges and opportunities of 'HTML' output from 'R markdown'
receive special attention. Includes several vignettes
to assist new users of literate programming.
Author: Paul Johnson [aut, cre],
Brent Kaplan [ctb],
Meghan Sullivan [ctb],
Charles Redmon [ctb],
Zack Roman [ctb],
Chong Xing [ctb],
Longcan 'Emma' Huang [ctb],
Garrett Mills [ctb]
Maintainer: Paul Johnson <pauljohn@ku.edu>
Diff between stationery versions 0.98.6 dated 2019-02-19 and 0.98.24 dated 2019-11-16
stationery-0.98.24/stationery/DESCRIPTION | 14 stationery-0.98.24/stationery/MD5 | 101 ++--- stationery-0.98.24/stationery/R/runme.R | 192 +++++----- stationery-0.98.24/stationery/build/vignette.rds |binary stationery-0.98.24/stationery/inst/ChangeLog | 5 stationery-0.98.24/stationery/inst/doc/HTML_special_features.Rmd | 2 stationery-0.98.24/stationery/inst/doc/HTML_special_features.html | 171 ++++---- stationery-0.98.24/stationery/inst/doc/Rmarkdown.R | 2 stationery-0.98.24/stationery/inst/doc/Rmarkdown.Rmd | 112 ++--- stationery-0.98.24/stationery/inst/doc/Rmarkdown.pdf |binary stationery-0.98.24/stationery/inst/doc/code_chunks.Rmd | 7 stationery-0.98.24/stationery/inst/doc/code_chunks.pdf |binary stationery-0.98.24/stationery/inst/doc/stationery.R | 23 - stationery-0.98.24/stationery/inst/doc/stationery.Rnw | 32 - stationery-0.98.24/stationery/inst/doc/stationery.pdf |binary stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2html-guide/skeleton/R.bib | 10 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2html-guide/skeleton/instructions.Rmd | 6 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2html-guide/skeleton/rmd2html.R |only stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2html-guide/skeleton/skeleton.Rmd | 4 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-guide/skeleton/R.bib | 10 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-guide/skeleton/rmd2pdf.R |only stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-guide/skeleton/rmd2pdf.sh | 12 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-guide/skeleton/theme/guide-template.tex | 37 - stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-report/skeleton/R.bib | 10 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-report/skeleton/instructions.Rmd | 5 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-report/skeleton/rmd2pdf.R |only stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-report/skeleton/rmd2pdf.sh | 12 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-report/skeleton/skeleton.Rmd | 12 stationery-0.98.24/stationery/inst/rmarkdown/templates/rmd2pdf-report/skeleton/theme/report-template.tex | 4 stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-guide-knit/skeleton/R.bib | 10 stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-guide-knit/skeleton/rnw2pdf.R |only stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-guide-sweave/skeleton/R.bib | 10 stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-guide-sweave/skeleton/rnw2pdf.R |only stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-report-knit/skeleton/R.bib | 10 stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-report-knit/skeleton/rnw2pdf.R |only stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-report-sweave/skeleton/R.bib | 10 stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-report-sweave/skeleton/rnw2pdf.R |only stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-report-sweave/skeleton/skeleton.Rnw | 5 stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-report-sweave/skeleton/skeleton.lyx | 10 stationery-0.98.24/stationery/inst/rmarkdown/templates/rnw2pdf-slides-sweave/skeleton/R.bib | 10 stationery-0.98.24/stationery/inst/theme/R.bib | 10 stationery-0.98.24/stationery/inst/theme/guide-template.tex | 37 - stationery-0.98.24/stationery/inst/theme/report-template.tex | 4 stationery-0.98.24/stationery/inst/theme/rmd2pdf.R |only stationery-0.98.24/stationery/inst/theme/rmd2pdf.sh | 12 stationery-0.98.24/stationery/inst/theme/rnw2pdf-knit.R |only stationery-0.98.24/stationery/inst/theme/rnw2pdf-sweave.R |only stationery-0.98.24/stationery/man/rmd2html.Rd | 5 stationery-0.98.24/stationery/man/rmd2pdf.Rd | 5 stationery-0.98.24/stationery/man/rnw2pdf.Rd | 13 stationery-0.98.24/stationery/vignettes/HTML_special_features.Rmd | 2 stationery-0.98.24/stationery/vignettes/Rmarkdown.Rmd | 112 ++--- stationery-0.98.24/stationery/vignettes/code_chunks.Rmd | 7 stationery-0.98.24/stationery/vignettes/importfigs/rmd2pdf-header.png |binary stationery-0.98.24/stationery/vignettes/stationery.Rnw | 32 - stationery-0.98.24/stationery/vignettes/stationery.lyx | 34 + stationery-0.98.6/stationery/inst/rmarkdown/templates/rmd2pdf-report/skeleton/theme/guide-template.tex |only 57 files changed, 578 insertions(+), 543 deletions(-)
Title: Programming with Big Data -- MPI Profiling Tools
Description: MPI profiling tools.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Gaurav Sehrawat [aut],
Pragneshkumar Patel [aut],
George Ostrouchov [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdPROF versions 0.3-1 dated 2016-09-23 and 0.4-0 dated 2019-11-16
ChangeLog | 7 DESCRIPTION | 12 MD5 | 22 src/fpmpi/commused.c | 42 + src/fpmpi/fpmpi.h | 6 src/fpmpi/fpmpiconf.h.in | 9 src/fpmpi/profiler.c | 1079 +++++++++++++++++++++++++++----------------- src/fpmpi/profiler.h.in | 110 ++++ src/fpmpi/testwait.c | 47 + src/fpmpi/win/fpmpiconf.h | 27 - src/fpmpi/win/profiler.h | 114 ++++ vignettes/pbdPROF-guide.Rnw | 12 12 files changed, 993 insertions(+), 494 deletions(-)
Title: PC Algorithm with the Principle of Mendelian Randomization
Description: A PC Algorithm with the Principle of Mendelian Randomization. This package implements the MRPC
(PC with the principle of Mendelian randomization) algorithm to infer causal graphs. It also
contains functions to simulate data under a certain topology, to visualize a graph in different
ways, and to compare graphs and quantify the differences.
See Badsha and Fu (2019) <doi.org/10.3389/fgene.2019.00460>,Badsha, Martin and Fu (2018) <arXiv:1806.01899>.
Author: Md Bahadur Badsha [aut,cre],Evan A Martin [ctb] and Audrey Qiuyan Fu [aut]
Maintainer: Md Bahadur Badsha <mdbadsha@uidaho.edu>
Diff between MRPC versions 2.1.0 dated 2019-05-09 and 2.2.0 dated 2019-11-16
MRPC-2.1.0/MRPC/man/data_GEUVADIS.Rd |only MRPC-2.2.0/MRPC/DESCRIPTION | 11 MRPC-2.2.0/MRPC/MD5 | 113 ++-- MRPC-2.2.0/MRPC/NAMESPACE | 7 MRPC-2.2.0/MRPC/R/CompareMethodsNodeOrdering.R | 548 ++++++++++++---------- MRPC-2.2.0/MRPC/R/CompareMethodsVStructure.R | 370 ++++++++------ MRPC-2.2.0/MRPC/R/CutModules.R | 7 MRPC-2.2.0/MRPC/R/EdgeOrientation.R | 209 ++++---- MRPC-2.2.0/MRPC/R/MRPC.R | 19 MRPC-2.2.0/MRPC/R/ModiSkeleton.R | 51 +- MRPC-2.2.0/MRPC/R/PlotDendrogram.R | 16 MRPC-2.2.0/MRPC/R/PlotGraphWithModules.R | 16 MRPC-2.2.0/MRPC/R/RecallPrecision.R | 329 +++++++++---- MRPC-2.2.0/MRPC/R/RobustCor.R | 36 - MRPC-2.2.0/MRPC/R/SeqFDR.R | 7 MRPC-2.2.0/MRPC/R/SimulateData.R | 56 +- MRPC-2.2.0/MRPC/R/SimulateData1P.R | 4 MRPC-2.2.0/MRPC/R/SimulateData2P.R | 4 MRPC-2.2.0/MRPC/R/SimulateData3P.R | 4 MRPC-2.2.0/MRPC/R/SimulateDataNP.R | 3 MRPC-2.2.0/MRPC/R/aSHD.R | 26 - MRPC-2.2.0/MRPC/R/empty.R | 4 MRPC-2.2.0/MRPC/R/mpinv.r | 7 MRPC-2.2.0/MRPC/R/seqDiff.R | 20 MRPC-2.2.0/MRPC/README.md | 14 MRPC-2.2.0/MRPC/data/data_GEUVADIS_combined.rda |only MRPC-2.2.0/MRPC/data/datalist |only MRPC-2.2.0/MRPC/man/CompareMethodsNodeOrdering.Rd | 53 +- MRPC-2.2.0/MRPC/man/CompareMethodsVStructure.Rd | 53 +- MRPC-2.2.0/MRPC/man/Data_GEUVADIS.Rd |only MRPC-2.2.0/MRPC/man/EdgeOrientation.Rd | 75 +-- MRPC-2.2.0/MRPC/man/MRPC.Rd | 110 ++-- MRPC-2.2.0/MRPC/man/MRPCclass.Rd | 36 - MRPC-2.2.0/MRPC/man/MRPCtruth.Rd | 10 MRPC-2.2.0/MRPC/man/ModiSkeleton.Rd | 63 +- MRPC-2.2.0/MRPC/man/PlotDendrogram.Rd | 6 MRPC-2.2.0/MRPC/man/PlotGraphWithModules.Rd | 17 MRPC-2.2.0/MRPC/man/RecallPrecision.Rd | 31 - MRPC-2.2.0/MRPC/man/RobustCor.Rd | 17 MRPC-2.2.0/MRPC/man/SeqFDR.Rd | 5 MRPC-2.2.0/MRPC/man/SimulateData.Rd | 113 ++-- MRPC-2.2.0/MRPC/man/SimulateData1P.Rd | 6 MRPC-2.2.0/MRPC/man/SimulateData2P.Rd | 10 MRPC-2.2.0/MRPC/man/SimulateData3P.Rd | 12 MRPC-2.2.0/MRPC/man/SimulateDataNP.Rd | 4 MRPC-2.2.0/MRPC/man/aSHD.Rd | 7 MRPC-2.2.0/MRPC/man/data_GEUVADIS_combined.Rd |only MRPC-2.2.0/MRPC/man/data_examples.Rd | 129 +++-- MRPC-2.2.0/MRPC/man/data_with_outliers.Rd | 93 ++- MRPC-2.2.0/MRPC/man/data_without_outliers.Rd | 94 ++- MRPC-2.2.0/MRPC/man/empty.Rd | 2 MRPC-2.2.0/MRPC/man/seqDiff.Rd | 6 MRPC-2.2.0/MRPC/man/simu_data_M0.Rd | 4 MRPC-2.2.0/MRPC/man/simu_data_M1.Rd | 2 MRPC-2.2.0/MRPC/man/simu_data_M2.Rd | 2 MRPC-2.2.0/MRPC/man/simu_data_M3.Rd | 2 MRPC-2.2.0/MRPC/man/simu_data_M4.Rd | 2 MRPC-2.2.0/MRPC/man/simu_data_layered.Rd | 2 MRPC-2.2.0/MRPC/man/simu_data_multiparent.Rd | 2 MRPC-2.2.0/MRPC/man/simu_data_starshaped.Rd | 2 60 files changed, 1680 insertions(+), 1171 deletions(-)
Title: Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Description: Create and customize interactive maps using the 'Leaflet'
JavaScript library and the 'htmlwidgets' package. These maps can be used
directly from the R console, from 'RStudio', in Shiny applications and R Markdown
documents.
Author: Joe Cheng [aut, cre],
Bhaskar Karambelkar [aut],
Yihui Xie [aut],
Hadley Wickham [ctb],
Kenton Russell [ctb],
Kent Johnson [ctb],
Barret Schloerke [ctb],
jQuery Foundation and contributors [ctb, cph] (jQuery library),
Vladimir Agafonkin [ctb, cph] (Leaflet library),
CloudMade [cph] (Leaflet library),
Leaflet contributors [ctb] (Leaflet library),
Brandon Copeland [ctb, cph] (leaflet-measure plugin),
Joerg Dietrich [ctb, cph] (Leaflet.Terminator plugin),
Benjamin Becquet [ctb, cph] (Leaflet.MagnifyingGlass plugin),
Norkart AS [ctb, cph] (Leaflet.MiniMap plugin),
L. Voogdt [ctb, cph] (Leaflet.awesome-markers plugin),
Daniel Montague [ctb, cph] (Leaflet.EasyButton plugin),
Kartena AB [ctb, cph] (Proj4Leaflet plugin),
Robert Kajic [ctb, cph] (leaflet-locationfilter plugin),
Mapbox [ctb, cph] (leaflet-omnivore plugin),
Michael Bostock [ctb, cph] (topojson),
RStudio [cph]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between leaflet versions 2.0.2 dated 2018-08-27 and 2.0.3 dated 2019-11-16
leaflet-2.0.2/leaflet/data/providers.details.rda |only leaflet-2.0.2/leaflet/data/providers.rda |only leaflet-2.0.2/leaflet/inst/htmlwidgets/lib/leaflet-providers |only leaflet-2.0.2/leaflet/man/providers.details.Rd |only leaflet-2.0.2/leaflet/tests/test-all.R |only leaflet-2.0.2/leaflet/tests/testit |only leaflet-2.0.3/leaflet/DESCRIPTION | 19 leaflet-2.0.3/leaflet/LICENSE.note | 15 leaflet-2.0.3/leaflet/MD5 | 52 leaflet-2.0.3/leaflet/NAMESPACE | 2 leaflet-2.0.3/leaflet/NEWS | 17 leaflet-2.0.3/leaflet/R/normalize-SharedData.R | 2 leaflet-2.0.3/leaflet/R/normalize-sf.R | 10 leaflet-2.0.3/leaflet/R/plugin-providers.R | 47 leaflet-2.0.3/leaflet/R/shiny.R | 3 leaflet-2.0.3/leaflet/R/utils.R | 4 leaflet-2.0.3/leaflet/R/zzz.R |only leaflet-2.0.3/leaflet/R/zzz_viztest.R |only leaflet-2.0.3/leaflet/README.md | 35 leaflet-2.0.3/leaflet/inst/htmlwidgets/leaflet.js | 822 ++++------ leaflet-2.0.3/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/package.json | 2 leaflet-2.0.3/leaflet/man/aaa-test-viztest.Rd |only leaflet-2.0.3/leaflet/man/map-shiny.Rd | 3 leaflet-2.0.3/leaflet/man/providers.Rd | 6 leaflet-2.0.3/leaflet/tests/testthat/test-colors.R | 121 + leaflet-2.0.3/leaflet/tests/testthat/test-evalFormula.R |only leaflet-2.0.3/leaflet/tests/testthat/test-icon.R |only leaflet-2.0.3/leaflet/tests/testthat/test-legend.R |only leaflet-2.0.3/leaflet/tests/testthat/test-measure.R |only leaflet-2.0.3/leaflet/tests/testthat/test-remote.R |only 30 files changed, 642 insertions(+), 518 deletions(-)
Title: Planning and Analyzing Dose Finding Experiments
Description: The DoseFinding package provides functions for the design and analysis
of dose-finding experiments (with focus on pharmaceutical Phase
II clinical trials). It provides functions for: multiple contrast
tests, fitting non-linear dose-response models (using Bayesian and
non-Bayesian estimation), calculating optimal designs and an
implementation of the MCPMod methodology (Pinheiro et al. (2014)
<doi:10.1002/sim.6052>).
Author: Bjoern Bornkamp [aut, cre] (<https://orcid.org/0000-0002-6294-8185>),
Jose Pinheiro [ctb],
Frank Bretz [ctb]
Maintainer: Bjoern Bornkamp <bbnkmp@gmail.com>
Diff between DoseFinding versions 0.9-16 dated 2018-01-04 and 0.9-17 dated 2019-11-16
ChangeLog | 7 +++++++ DESCRIPTION | 19 +++++++++++++------ MD5 | 18 +++++++++--------- R/MCTtest.R | 20 ++++++++++++++------ R/Mods.R | 5 ++++- man/DoseFinding-package.Rd | 4 ++-- man/Mods.Rd | 2 +- tests/testsMCT.R | 24 ++++++++++++++++++++++++ tests/testsoptContr.R | 4 ++-- tests/testsplotDRMod.R | 2 +- 10 files changed, 77 insertions(+), 28 deletions(-)
Title: Access the Bioconductor Project Package Repository
Description: A convenient tool to install and update Bioconductor packages.
Author: Martin Morgan [aut] (<https://orcid.org/0000-0002-5874-8148>),
Marcel Ramos [ctb, cre] (<https://orcid.org/0000-0002-3242-0582>)
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Diff between BiocManager versions 1.30.9 dated 2019-10-23 and 1.30.10 dated 2019-11-16
DESCRIPTION | 6 ++--- MD5 | 14 +++++------ R/zzz.R | 3 ++ README.md | 44 +++++++++++++++++++++++-------------- inst/doc/BiocManager.html | 7 +++-- tests/testthat.R | 14 ++++++++++- tests/testthat/test_repositories.R | 1 tests/testthat/test_version.R | 1 8 files changed, 59 insertions(+), 31 deletions(-)