Title: Create, Manipulate and Query Parameter Terms
Description: Creates, manipulates, queries and repairs vectors of parameter terms.
Parameter terms are the labels used to reference values in vectors, matrices
and arrays. They represent the names in coefficient tables and
the column names in 'mcmc' and 'mcmc.list' objects.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Ayla Pearson [ctb] (<https://orcid.org/0000-0001-7388-1222>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between term versions 0.0.1 dated 2019-12-15 and 0.1.0 dated 2020-01-15
DESCRIPTION | 13 +++-- MD5 | 94 +++++++++++++++++++++++-------------------- NAMESPACE | 3 + NEWS.md | 4 + R/as-term.R | 6 -- R/chk.R |only R/complete-terms.R | 4 - R/consistent-term.R | 2 R/deprecated.R | 8 +-- R/dims.R | 3 - R/is-incomplete-terms.R | 3 - R/is-inconsistent-terms.R | 3 - R/is.R | 2 R/namespace.R | 1 R/ndims.R | 3 - R/npars.R | 3 - R/npdims.R | 6 -- R/nterms.R | 3 - R/params.R |only R/pars.R | 7 --- R/pdims.R | 3 - R/repair-terms.R | 2 R/subset.R | 4 - R/term.R | 7 +-- R/tindex.R | 3 - R/unique.R | 4 - R/valid-term.R | 2 R/vld.R |only README.md | 32 +++++++++----- man/as.term.Rd | 4 - man/chk_term.Rd |only man/complete_terms.Rd | 4 - man/consistent_term.Rd | 2 man/dims.Rd | 4 - man/is.incomplete_terms.Rd | 4 - man/is.inconsistent_terms.Rd | 4 - man/is.term.Rd | 2 man/ndims.Rd | 4 - man/npars.Rd | 2 man/npdims.Rd | 3 - man/params.Rd |only man/pars.Rd | 4 - man/pdims.Rd | 2 man/repair_terms.Rd | 2 man/subset.term.Rd | 2 man/term.Rd | 3 - man/tindex.Rd | 2 man/unique.term.Rd | 2 man/valid_term.Rd | 2 man/vld_term.Rd |only tests/testthat/test-chk.R |only tests/testthat/test-vld.R |only 52 files changed, 142 insertions(+), 135 deletions(-)
Title: Statistical Modeling of Animal Movements
Description: Animal movement models including moving-resting process
with embedded Brownian motion according to
Yan et al. (2014) <doi:10.1007/s10144-013-0428-8>,
Pozdnyakov et al. (2017) <doi:10.1007/s11009-017-9547-6>,
Brownian motion with measurement error according to
Pozdnyakov et al. (2014) <doi:10.1890/13-0532.1>,
and moving-resting-handling process with embedded Brownian motion,
Pozdnyakov et al. (2018) <arXiv:1806.00849>.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [aut],
Jun Yan [aut]
Maintainer: Chaoran Hu <chaoran.hu@uconn.edu>
Diff between smam versions 0.5.0 dated 2020-01-14 and 0.5.1 dated 2020-01-15
DESCRIPTION | 10 ++++----- MD5 | 36 +++++++++++++++++------------------ NEWS.md | 7 ++++++ configure | 18 ++++++++--------- configure.ac | 2 - inst/CITATION | 4 +-- man/approxNormalOrder.Rd | 5 ---- man/estVarMRME_Godambe.Rd | 47 ++++++++++++++++++++++++++-------------------- man/fitBMME.Rd | 14 +++++++------ man/fitMR.Rd | 29 +++++++++++++++++++--------- man/fitMRH.Rd | 13 ++++++++---- man/fitMRME.Rd | 43 ++++++++++++++++++++++++++---------------- man/fitStateMR.Rd | 10 +++++++-- man/fitStateMRH.Rd | 9 ++++++-- man/integr.control.Rd | 7 ++++-- man/rBMME.Rd | 2 - man/rMR.Rd | 4 --- man/smam.Rd | 1 src/MRME.cpp | 4 +-- 19 files changed, 155 insertions(+), 110 deletions(-)
Title: Automatic Calculation of Effects for Piecewise Structural
Equation Models
Description: Provides functionality to automatically calculate direct, indirect,
and total effects from piecewise structural equation models, comprising
lists of fitted models representing structured equations (Lefcheck 2016
<doi:10/f8s8rb>). Confidence intervals are provided via bootstrapping.
Author: Mark Murphy [aut, cre]
Maintainer: Mark Murphy <murphymv@gmail.com>
Diff between semEff versions 0.2.0 dated 2020-01-08 and 0.2.1 dated 2020-01-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 ++++++ R/sem_eff_fun.R | 7 +++---- 4 files changed, 15 insertions(+), 10 deletions(-)
Title: Create Interactive Graphics Related to Clinical Trial Safety
Description: A framework for evaluation of clinical trial safety. Users can interactively explore their data using the 'Shiny' application or create standalone 'htmlwidget' charts. Interactive charts are built using 'd3.js' and 'webcharts.js' 'JavaScript' libraries.
Author: Jeremy Wildfire [cre, aut],
Becca Krouse [aut],
Preston Burns [aut],
Xiao Ni [aut],
James Buchanan [aut],
Susan Duke [aut],
Interactive Safety Graphics Working Group [aut],
Rho Inc. [cph]
Maintainer: Jeremy Wildfire <jeremy_wildfire@rhoworld.com>
Diff between safetyGraphics versions 1.0.0 dated 2019-06-14 and 1.1.0 dated 2020-01-15
safetyGraphics-1.0.0/safetyGraphics/R/data_checks.R |only safetyGraphics-1.0.0/safetyGraphics/inst/htmlwidgets/lib/hep-explorer-1.0.1 |only safetyGraphics-1.0.0/safetyGraphics/inst/htmlwidgets/lib/paneled-outlier-explorer-1.1.3 |only safetyGraphics-1.0.0/safetyGraphics/inst/htmlwidgets/lib/safety-histogram-2.4.0-dev |only safetyGraphics-1.0.0/safetyGraphics/inst/htmlwidgets/lib/safety-outlier-explorer-2.5.4 |only safetyGraphics-1.0.0/safetyGraphics/inst/htmlwidgets/lib/safety-shift-plot-2.1.2 |only safetyGraphics-1.1.0/safetyGraphics/DESCRIPTION | 17 safetyGraphics-1.1.0/safetyGraphics/MD5 | 97 ++-- safetyGraphics-1.1.0/safetyGraphics/NAMESPACE | 5 safetyGraphics-1.1.0/safetyGraphics/NEWS.md | 6 safetyGraphics-1.1.0/safetyGraphics/R/addChart.R |only safetyGraphics-1.1.0/safetyGraphics/R/addSetting.R |only safetyGraphics-1.1.0/safetyGraphics/R/chartRenderer.R | 42 + safetyGraphics-1.1.0/safetyGraphics/R/createChart.R |only safetyGraphics-1.1.0/safetyGraphics/R/getRequiredSettings.R | 2 safetyGraphics-1.1.0/safetyGraphics/R/getSettingsMetadata.R | 14 safetyGraphics-1.1.0/safetyGraphics/R/removeCharts.R |only safetyGraphics-1.1.0/safetyGraphics/R/removeSettings.R |only safetyGraphics-1.1.0/safetyGraphics/R/safetyGraphicsApp.R | 67 ++- safetyGraphics-1.1.0/safetyGraphics/R/settingsMetadata.R | 3 safetyGraphics-1.1.0/safetyGraphics/R/trimSettings.R | 2 safetyGraphics-1.1.0/safetyGraphics/R/validateSettings.R | 12 safetyGraphics-1.1.0/safetyGraphics/README.md | 2 safetyGraphics-1.1.0/safetyGraphics/build/vignette.rds |binary safetyGraphics-1.1.0/safetyGraphics/data/chartsMetadata.rda |binary safetyGraphics-1.1.0/safetyGraphics/data/settingsMetadata.rda |binary safetyGraphics-1.1.0/safetyGraphics/inst/doc/customWorkflows.R |only safetyGraphics-1.1.0/safetyGraphics/inst/doc/customWorkflows.Rmd |only safetyGraphics-1.1.0/safetyGraphics/inst/doc/customWorkflows.html |only safetyGraphics-1.1.0/safetyGraphics/inst/doc/shinyUserGuide.html | 8 safetyGraphics-1.1.0/safetyGraphics/inst/examples |only safetyGraphics-1.1.0/safetyGraphics/inst/htmlwidgets/chartRenderer.yaml | 25 - safetyGraphics-1.1.0/safetyGraphics/inst/htmlwidgets/lib/hep-explorer-1.3.1 |only safetyGraphics-1.1.0/safetyGraphics/inst/htmlwidgets/lib/paneled-outlier-explorer-1.1.4 |only safetyGraphics-1.1.0/safetyGraphics/inst/htmlwidgets/lib/safety-delta-delta-1.0.0 |only safetyGraphics-1.1.0/safetyGraphics/inst/htmlwidgets/lib/safety-histogram-2.4.1 |only safetyGraphics-1.1.0/safetyGraphics/inst/htmlwidgets/lib/safety-outlier-explorer-2.6.0 |only safetyGraphics-1.1.0/safetyGraphics/inst/htmlwidgets/lib/safety-shift-plot-2.1.3 |only safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphicsHex/safetyGraphicsHex.png |binary safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphicsHex/safetyHex.R | 2 safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/global.R | 78 +++ safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/modules/dataUpload/dataUpload.R | 10 safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/modules/dataUpload/dataUploadUI.R | 7 safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/modules/renderChart/renderChart.R | 70 ++- safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/modules/renderReports/safetyGraphicsReport.Rmd | 213 ++-------- safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/modules/renderSettings/renderSettings.R | 17 safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/modules/renderSettings/util/createControl.R | 2 safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/server.R | 66 +-- safetyGraphics-1.1.0/safetyGraphics/inst/safetyGraphics_app/ui.R | 3 safetyGraphics-1.1.0/safetyGraphics/man/addChart.Rd |only safetyGraphics-1.1.0/safetyGraphics/man/addSetting.Rd |only safetyGraphics-1.1.0/safetyGraphics/man/chartRenderer.Rd | 2 safetyGraphics-1.1.0/safetyGraphics/man/createChart.Rd |only safetyGraphics-1.1.0/safetyGraphics/man/getRequiredSettings.Rd | 2 safetyGraphics-1.1.0/safetyGraphics/man/removeCharts.Rd |only safetyGraphics-1.1.0/safetyGraphics/man/removeSettings.Rd |only safetyGraphics-1.1.0/safetyGraphics/man/safetyGraphicsApp.Rd | 12 safetyGraphics-1.1.0/safetyGraphics/man/settingsMetadata.Rd | 3 safetyGraphics-1.1.0/safetyGraphics/man/trimSettings.Rd | 2 safetyGraphics-1.1.0/safetyGraphics/tests/testthat/test_generateSettings.R | 2 safetyGraphics-1.1.0/safetyGraphics/tests/testthat/test_trimSettings.R | 2 safetyGraphics-1.1.0/safetyGraphics/vignettes/customWorkflows.Rmd |only 62 files changed, 466 insertions(+), 329 deletions(-)
More information about safetyGraphics at CRAN
Permanent link
Title: Hierarchical Bayesian ANOVA Models
Description: It covers several Bayesian Analysis of Variance (BANOVA) models used in analysis of experimental designs in which both within- and between- subjects factors are manipulated. They can be applied to data that are common in the behavioral and social sciences. The package includes: Hierarchical Bayes ANOVA models with normal response, t response, Binomial (Bernoulli) response, Poisson response, ordered multinomial response and multinomial response variables. All models accommodate unobserved heterogeneity by including a normal distribution of the parameters across individuals. Outputs of the package include tables of sums of squares, effect sizes and p-values, and tables of predictions, which are easily interpretable for behavioral and social researchers. The floodlight analysis and mediation analysis based on these models are also provided. BANOVA uses 'Stan' and 'JAGS' as the computational platform.
Author: Chen Dong, Michel Wedel
Maintainer: Chen Dong <cdong@math.umd.edu>
Diff between BANOVA versions 1.1.5 dated 2020-01-10 and 1.1.6 dated 2020-01-15
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 4 ++++ inst/stan/single_Bernoulli.stan | 2 +- inst/stan/single_Binomial.stan | 2 +- inst/stan/single_Normal.stan | 2 +- inst/stan/single_Poisson.stan | 2 +- inst/stan/single_T.stan | 2 +- inst/stan/single_ordMultinomial.stan | 2 +- man/BANOVA-package.Rd | 4 ++-- 10 files changed, 25 insertions(+), 21 deletions(-)
Title: Principal Coordinates of Phylogenetic Structure
Description: Set of functions for analysis of Principal Coordinates of Phylogenetic Structure (PCPS).
Author: Vanderlei Julio Debastiani
Maintainer: Vanderlei Julio Debastiani <vanderleidebastiani@yahoo.com.br>
Diff between PCPS versions 1.0.6 dated 2018-05-24 and 1.0.7 dated 2020-01-15
DESCRIPTION | 27 +- MD5 | 55 +++- NAMESPACE | 22 + R/FUN.ADONIS.R |only R/FUN.GLM.R |only R/FUN.GLS.marginal.R |only R/FUN.GLS.sequential.R |only R/FUN.LME.marginal.R |only R/FUN.LME.sequential.R |only R/FUN.MANTEL.R |only R/FUN.RDA.R |only R/check.formula.R |only R/matrix.p.null.R |only R/matrix.p.sig.R | 158 ++++-------- R/mutate.names.matrix.p.null.R |only R/organize.pcps.R |only R/pcoa.sig.R | 32 +- R/pcpc.curve.calc.R | 1 R/pcps.R | 59 ++++ R/pcps.curve.R | 203 ++++++++++------ R/pcps.sig.R | 465 +++++++++++++++++++++++++------------- R/print.pcps.R | 5 R/print.pcpscurve.R | 5 R/print.pcpssig.R |only R/print.summarypcps.R | 5 R/scores.pcps.R | 2 R/select.pcpsmethod.R |only R/summary.pcoasig.R | 2 R/wcmdscale.org.R | 2 man/check.formula.Rd |only man/matrix.p.null.Rd |only man/mutate.names.matrix.p.null.Rd |only man/organize.pcps.Rd |only man/pcoa.sig.Rd | 25 +- man/pcps.Rd | 55 +++- man/pcps.curve.Rd | 83 ++++-- man/pcps.sig.Rd | 378 +++++++++++++++++++++++++++--- man/select.pcpsmethod.Rd |only 38 files changed, 1102 insertions(+), 482 deletions(-)
Title: New Data Visualisations for SOMs Networks
Description: The aim of this package is to offer more variability of graphics based on the self-organizing maps.
Author: Felipe Carvalho [aut, cre],
Rafael Santos [ctb],
Karine Reis [ctb]
Maintainer: Felipe Carvalho <lipecaso@gmail.com>
Diff between ggsom versions 0.2.1 dated 2018-08-01 and 0.4.0 dated 2020-01-15
ggsom-0.2.1/ggsom/R/aes_som.R |only ggsom-0.2.1/ggsom/R/ggsom_line.R |only ggsom-0.2.1/ggsom/R/ggsom_rect.R |only ggsom-0.2.1/ggsom/R/ggsom_ribbon.R |only ggsom-0.2.1/ggsom/R/utils.R |only ggsom-0.2.1/ggsom/build |only ggsom-0.2.1/ggsom/inst/doc |only ggsom-0.2.1/ggsom/inst/extdata/cbf.csv |only ggsom-0.2.1/ggsom/inst/extdata/movies.csv |only ggsom-0.2.1/ggsom/man/aes_color.Rd |only ggsom-0.2.1/ggsom/man/aes_som.Rd |only ggsom-0.2.1/ggsom/man/ggsom_line.Rd |only ggsom-0.2.1/ggsom/man/ggsom_rect.Rd |only ggsom-0.2.1/ggsom/man/ggsom_ribbon.Rd |only ggsom-0.2.1/ggsom/man/is.cluster.Rd |only ggsom-0.2.1/ggsom/man/sum_unit_class.Rd |only ggsom-0.2.1/ggsom/tests |only ggsom-0.2.1/ggsom/vignettes |only ggsom-0.4.0/ggsom/DESCRIPTION | 30 ++++---- ggsom-0.4.0/ggsom/MD5 | 49 ++++---------- ggsom-0.4.0/ggsom/NAMESPACE | 26 ++++--- ggsom-0.4.0/ggsom/R/ggsom.R | 12 +-- ggsom-0.4.0/ggsom/R/ggsom_aes.R |only ggsom-0.4.0/ggsom/R/ggsom_entropy.R |only ggsom-0.4.0/ggsom/R/ggsom_plot.R |only ggsom-0.4.0/ggsom/R/ggsom_utils.R |only ggsom-0.4.0/ggsom/R/zzz.R | 17 ++++ ggsom-0.4.0/ggsom/inst/CITATION |only ggsom-0.4.0/ggsom/inst/extdata/climate_changes_annual.csv |only ggsom-0.4.0/ggsom/man/geom_class.Rd |only ggsom-0.4.0/ggsom/man/ggsom.Rd | 6 - ggsom-0.4.0/ggsom/man/ggsom_aes.Rd |only ggsom-0.4.0/ggsom/man/ggsom_entropy.Rd |only ggsom-0.4.0/ggsom/man/is.kohonen.Rd | 20 +++-- 34 files changed, 82 insertions(+), 78 deletions(-)
Title: Allan Variance
Description: Implements the allan variance and allan variance linear regression estimator for latent time series models. More details about the method can be found, for example, in Guerrier, S., Molinari, R., & Stebler, Y. (2016) <doi:10.1109/LSP.2016.2541867>.
Author: Stéphane Guerrier [aut, cre],
James Balamuta [aut],
Gaetan Bakalli [aut],
Roberto Molinari [aut],
Justin Lee [aut],
Ahmed Radi [aut],
Haotian Xu [aut],
Yuming Zhang [aut],
Nathanael Claussen [aut]
Maintainer: Stéphane Guerrier <stef.guerrier@gmail.com>
Diff between avar versions 0.1.0 dated 2019-08-30 and 0.1.1 dated 2020-01-15
DESCRIPTION | 10 MD5 | 50 ++- NAMESPACE | 8 NEWS.md | 8 R/av-package.r | 1 R/avar.r | 677 +++++++++++++++++---------------------------- R/avlr.R |only R/data.R |only README.md | 12 build/vignette.rds |binary data |only inst/doc/avar-example.R | 14 inst/doc/avar-example.Rmd | 36 +- inst/doc/avar-example.html | 68 +++- man/adis_av.Rd |only man/avar.Rd | 30 + man/avlr.Rd | 77 ++++- man/boostrap_ci_avlr.Rd | 6 man/fit_avlr.Rd |only man/imar_av.Rd |only man/kvh1750_av.Rd |only man/navchip_av.Rd |only man/plot.avar.Rd | 20 + man/plot.avlr.Rd | 27 + man/plot.imu_avar.Rd |only man/plot.imu_avlr.Rd |only man/print.avlr.Rd | 2 man/print.imu_avlr.Rd |only man/summary.avar.Rd | 10 vignettes/avar-example.Rmd | 36 +- 30 files changed, 574 insertions(+), 518 deletions(-)
Title: The Generalized DINA Model Framework
Description: A set of psychometric tools for cognitive diagnosis modeling based on the generalized deterministic inputs, noisy and gate (G-DINA) model by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7> and its extensions, including the sequential G-DINA model by Ma and de la Torre (2016) <DOI:10.1111/bmsp.12070> for polytomous responses, and the polytomous G-DINA model by Chen and de la Torre <DOI:10.1177/0146621613479818> for polytomous attributes. Joint attribute distribution can be independent, saturated, higher-order, loglinear smoothed or structured. Q-matrix validation, item and model fit statistics, model comparison at test and item level and differential item functioning can also be conducted. A graphical user interface is also provided.
Author: Wenchao Ma [aut, cre, cph],
Jimmy de la Torre [aut, cph],
Miguel Sorrel [ctb],
Zhehan Jiang [ctb]
Maintainer: Wenchao Ma <wenchao.ma@ua.edu>
Diff between GDINA versions 2.7.3 dated 2019-08-19 and 2.7.8 dated 2020-01-15
DESCRIPTION | 9 +-- MD5 | 45 ++++++++-------- NEWS.md | 7 ++ R/GDI.R | 1 R/GDINA.R | 48 ++++++++++++------ R/GMSCDM.R | 16 +++--- R/extract.R | 1 R/plotIRF.GDINA.R | 7 ++ R/print.GDINA.R | 11 +--- R/s3GDINA.R | 2 R/score.R | 44 +++++++--------- R/simGDINA.R | 14 ++--- README.md | 9 ++- build/vignette.rds |binary inst/CITATION | 8 +-- inst/doc/GDINA.R | 16 +++--- inst/doc/GDINA.Rmd | 1 inst/doc/GDINA.html | 8 +-- man/GDINA.Rd | 48 ++++++++++++------ man/extract.Rd | 1 man/simGDINA.Rd | 12 ++-- src/util.cpp | 1 vignettes/GDINA.Rmd | 1 vignettes/OnlineExercises/sGDINA_analysis_example.Rmd |only 24 files changed, 181 insertions(+), 129 deletions(-)
Title: Mixed Effects Regression for Linear, Non-Linear and User-Defined
Models
Description: Fits linear, non-linear, and user-defined mixed effects regression models following
the framework developed by Crowther (2017) <arXiv:1710.02223>. 'merlin' can fit multivariate
outcome models of any type, each of which could be repeatedly measured (longitudinal), with
any number of levels, and with any number of random effects at each level. Standard
distributions/models available include the Bernoulli, Gaussian, Poisson, beta,
negative-binomial, and time-to-event/survival models include the exponential,
Gompertz, Royston-Parmar, Weibull and general hazard model. 'merlin' provides a
flexible predictor syntax, allowing the user to define variables, random effects,
spline and fractional polynomial functions, functions of
other outcome models, and any interaction between each of them. Non-linear and
time-dependent effects are seamlessly incorporated into the predictor. 'merlin'
allows multivariate normal random effects, which are integrated out using Gaussian
quadrature or Monte-Carlo integration. Note, 'merlin' is based on the 'Stata' package
of the same name, described in Crowther (2018) <arXiv:1806.01615>.
Author: Emma Martin [aut],
Alessandro Gasparini [aut],
Michael Crowther [aut, cre]
Maintainer: Michael Crowther <michael.crowther@le.ac.uk>
Diff between merlin versions 0.0.1 dated 2018-08-16 and 0.0.2 dated 2020-01-15
DESCRIPTION | 17 MD5 | 53 +- NAMESPACE | 17 NEWS.md | 13 R/data.R | 2 R/merlin.R | 413 ++++++++++-------- R/merlin_error_check.R | 4 R/merlin_initial_values.R | 5 R/mlsurv.R |only build/vignette.rds |binary inst/doc/merlin.R | 22 inst/doc/merlin.Rmd | 6 inst/doc/merlin.html | 561 ++++++++++++++++++------- man/coef.merlin.Rd |only man/coef.mlsurv.Rd |only man/logLik.merlin.Rd |only man/logLik.mlsurv.Rd |only man/merlin.Rd | 161 +++---- man/mlsurv.Rd |only man/pbc.Rd | 2 man/predict.merlin.Rd | 10 man/print.merlin.Rd |only man/print.mlsurv.Rd |only man/summary.merlin.Rd |only man/summary.mlsurv.Rd |only man/vcov.merlin.Rd |only man/vcov.mlsurv.Rd |only tests/testthat.R | 14 tests/testthat/test_error_code_checking.R | 666 ++++++++++++++++-------------- tests/testthat/test_fixed.R | 247 +++++------ tests/testthat/test_ghq.R | 654 +++++++++++++++++------------ tests/testthat/test_mci.R | 2 tests/testthat/test_mlsurv.R |only vignettes/merlin.Rmd | 6 34 files changed, 1712 insertions(+), 1163 deletions(-)
Title: Check User-Supplied Function Arguments
Description: For developers to check user-supplied function
arguments. It is designed to be simple, fast and customizable. Error
messages follow the tidyverse style guide.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>),
Ayla Pearson [ctb] (<https://orcid.org/0000-0001-7388-1222>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between chk versions 0.2.1 dated 2019-11-26 and 0.3.0 dated 2020-01-15
DESCRIPTION | 8 ++++---- MD5 | 23 +++++++++++++---------- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/chk-sorted.R |only README.md | 2 +- build/chk.pdf |binary build/vignette.rds |binary inst/doc/chk-families.html | 3 +-- inst/doc/chk.html | 3 +-- man/chk_not_any_na.Rd | 3 ++- man/chk_not_empty.Rd | 3 ++- man/chk_sorted.Rd |only tests/testthat/test-chk-sorted.R |only 14 files changed, 30 insertions(+), 21 deletions(-)
Title: Quantitative Classification by Association Rules
Description: CBA postprocessing algorithm that creates smaller models for datasets containing quantitative (numerical) attributes. Article describing QCBA is published in Tomas Kliegr (2017) <arXiv:1711.10166>.
Author: Tomas Kliegr
Maintainer: Tomas Kliegr <kliegr@gmail.com>
Diff between qCBA versions 0.3.1 dated 2018-01-12 and 0.4 dated 2020-01-15
qCBA-0.3.1/qCBA/man/arulesCBAModel2CustomCBAModel.Rd |only qCBA-0.3.1/qCBA/man/rcbaModel2CustomCBAModel.Rd |only qCBA-0.4/qCBA/DESCRIPTION | 14 qCBA-0.4/qCBA/MD5 | 27 - qCBA-0.4/qCBA/NAMESPACE | 5 qCBA-0.4/qCBA/NEWS | 8 qCBA-0.4/qCBA/R/rMARC.R | 258 +++++++--- qCBA-0.4/qCBA/inst/java/AC1.jar |binary qCBA-0.4/qCBA/java/src/eu/kliegr/ac1/R/RinterfacePredict.java | 70 ++ qCBA-0.4/qCBA/java/src/eu/kliegr/ac1/rule/TestRules.java | 25 qCBA-0.4/qCBA/java/src/eu/kliegr/ac1/rule/extend/ExtendRule.java | 3 qCBA-0.4/qCBA/java/src/eu/kliegr/ac1/rule/extend/ExtendRules.java | 6 qCBA-0.4/qCBA/man/arulesCBA2arcCBAModel.Rd |only qCBA-0.4/qCBA/man/predict.qCBARuleModel.Rd | 9 qCBA-0.4/qCBA/man/qcba.Rd | 13 qCBA-0.4/qCBA/man/rcbaModel2CBARuleModel.Rd |only qCBA-0.4/qCBA/man/sbrlModel2arcCBARuleModel.Rd |only 17 files changed, 352 insertions(+), 86 deletions(-)
Title: Process Map Token Replay Animation
Description: Provides animated process maps based on the 'procesmapR' package.
Cases stored in event logs created with with 'bupaR' S3 class eventlog() are
rendered as tokens (SVG shapes) and animated according to their occurrence
times on top of the process map. For rendering SVG animations ('SMIL') and the
'htmlwidget' package are used.
Author: Felix Mannhardt [aut, cre],
Gert Janssenswillen [ctb]
Maintainer: Felix Mannhardt <felix.mannhardt@sintef.no>
Diff between processanimateR versions 1.0.1 dated 2019-06-12 and 1.0.2 dated 2020-01-15
DESCRIPTION | 14 MD5 | 68 +-- NAMESPACE | 1 NEWS.md | 5 R/processanimateR.R | 21 + README.md | 14 build/vignette.rds |binary inst/doc/use-external-data-to-change-tokens.R | 4 inst/doc/use-external-data-to-change-tokens.html | 218 +++++++++--- inst/doc/use-shiny-selections.R | 4 inst/doc/use-shiny-selections.html | 13 inst/doc/use-timestamp-change-token-aes.R | 8 inst/doc/use-timestamp-change-token-aes.html | 203 ++++++++--- inst/doc/use-token_scales.R | 8 inst/doc/use-token_scales.html | 211 ++++++++--- inst/doc/use-with-shiny.R | 6 inst/doc/use-with-shiny.html | 13 inst/htmlwidgets/lib/modules/animation_playback_control.js | 54 +- inst/htmlwidgets/lib/modules/animation_renderer_graphviz.js | 10 inst/htmlwidgets/lib/modules/animation_renderer_leaflet.js | 7 inst/htmlwidgets/lib/modules/animation_scales.js | 19 - inst/htmlwidgets/processanimateR.js | 22 - man/activity_select_decoration.Rd | 7 man/animate_process.Rd | 41 +- man/attribution_osm.Rd | 32 - man/example_log.Rd | 26 - man/icon_circle.Rd | 32 - man/icon_marker.Rd | 32 - man/processanimaterOutput.Rd | 34 - man/renderProcessanimater.Rd | 36 - man/renderer_graphviz.Rd | 56 +-- man/renderer_leaflet.Rd | 22 - man/token_aes.Rd | 11 man/token_scale.Rd | 8 man/token_select_decoration.Rd | 50 +- 35 files changed, 865 insertions(+), 445 deletions(-)
More information about processanimateR at CRAN
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Title: Wizardry Code Offensive Programming
Description: Allows to change R coding from defensive programming (i.e. many input
parameter checks implementation required) to offensive
programming (none/reduced number of parameter checks required). Provides code
instrumentation to ease this change. Should reduce
the code size as many controls and type checks have no more reason to exist.
Should also speed up processing as many checks will be reduced to single check.
Author: Fabien Gelineau <neonira@gmail.com>
Maintainer: Fabien Gelineau <neonira@gmail.com>
Diff between wyz.code.offensiveProgramming versions 1.1.14 dated 2019-10-28 and 1.1.15 dated 2020-01-15
wyz.code.offensiveProgramming-1.1.14/wyz.code.offensiveProgramming/inst/doc/wyz.code.offensiveProgramming.R |only wyz.code.offensiveProgramming-1.1.14/wyz.code.offensiveProgramming/inst/doc/wyz.code.offensiveProgramming.Rmd |only wyz.code.offensiveProgramming-1.1.14/wyz.code.offensiveProgramming/inst/doc/wyz.code.offensiveProgramming.html |only wyz.code.offensiveProgramming-1.1.14/wyz.code.offensiveProgramming/vignettes/op-hexsticker-transparent.png |only wyz.code.offensiveProgramming-1.1.14/wyz.code.offensiveProgramming/vignettes/wyz.code.offensiveProgramming.Rmd |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/DESCRIPTION | 6 wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/MD5 | 48 ++- wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/NAMESPACE | 27 +- wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/R/FunctionParameterTypeFactory.R | 106 ++++---- wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/R/findFilesInPackage.R |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/R/getObjectClassKind.R | 3 wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/R/identifyOPInstrumentationLevel.R |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/R/outOfPackage.R | 7 wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/R/packageFunctionsInformation.R | 128 ++++++---- wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/R/retrievePackageFunctionNames.R |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/R/verifyObjectNames.R | 5 wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/build/partial.rdb |binary wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/build/vignette.rds |binary wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/inst/code-samples/classes/sample-classes.R | 121 ++++++++- wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/inst/doc/release.R |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/inst/doc/release.Rmd |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/inst/doc/release.html |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/man/findFilesInPackage.Rd |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/man/identifyOPInstrumentationLevel.Rd |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/man/retrievePackageFunctionNames.Rd |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/tests/testthat/test_FunctionParameterTypeFactory.R | 54 +++- wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/tests/testthat/test_findFilesInPackage.R |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/tests/testthat/test_getObjetFunctionArgumentNames.R | 1 wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/tests/testthat/test_identifyOPInstrumentationLevel.R |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/tests/testthat/test_retrieveFactory.R | 2 wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/tests/testthat/test_retrievePackageFunctionNames.R |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/tests/testthat/test_retrieveSupportedObjectInformation.R |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/vignettes/images |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/vignettes/release.Rmd |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/vignettes/style.css |only wyz.code.offensiveProgramming-1.1.15/wyz.code.offensiveProgramming/vignettes/vignette-common.R |only 36 files changed, 359 insertions(+), 149 deletions(-)
More information about wyz.code.offensiveProgramming at CRAN
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Title: Tools for Microscopy Imaging
Description: Tools for 3D imaging, mostly for biology/microscopy.
Read and write TIFF stacks. Functions for segmentation, filtering and analyzing 3D point patterns.
Author: Volker Schmid [aut, cre],
Priyanka Kukreja [ctb],
Fabian Scheipl [ctb]
Maintainer: Volker Schmid <stats@volkerschmid.de>
Diff between bioimagetools versions 1.1.3 dated 2018-04-11 and 1.1.4 dated 2020-01-15
bioimagetools-1.1.3/bioimagetools/src/Makevars |only bioimagetools-1.1.4/bioimagetools/DESCRIPTION | 19 bioimagetools-1.1.4/bioimagetools/MD5 | 81 - bioimagetools-1.1.4/bioimagetools/NEWS | 7 bioimagetools-1.1.4/bioimagetools/R/Kcross3D.R | 214 +-- bioimagetools-1.1.4/bioimagetools/R/L3cross3d.R | 56 bioimagetools-1.1.4/bioimagetools/R/bwlabel3d.R | 2 bioimagetools-1.1.4/bioimagetools/R/cNNTest.R | 82 - bioimagetools-1.1.4/bioimagetools/R/distance2border.R | 476 +++---- bioimagetools-1.1.4/bioimagetools/R/filterImage3d.R | 132 +- bioimagetools-1.1.4/bioimagetools/R/image.R | 243 +-- bioimagetools-1.1.4/bioimagetools/R/nearestclassdistances_c.R | 2 bioimagetools-1.1.4/bioimagetools/R/nearestneighbourdistribution.R | 54 bioimagetools-1.1.4/bioimagetools/R/outside.R | 68 - bioimagetools-1.1.4/bioimagetools/R/segment.R | 634 +++++----- bioimagetools-1.1.4/bioimagetools/R/segmentoutside.R | 178 +- bioimagetools-1.1.4/bioimagetools/R/spots.R | 75 - bioimagetools-1.1.4/bioimagetools/R/standardize.R | 88 - bioimagetools-1.1.4/bioimagetools/R/testColoc.R | 44 bioimagetools-1.1.4/bioimagetools/README.md | 10 bioimagetools-1.1.4/bioimagetools/build/vignette.rds |binary bioimagetools-1.1.4/bioimagetools/inst/doc/readwriteplot.R | 14 bioimagetools-1.1.4/bioimagetools/inst/doc/readwriteplot.html | 426 +++++- bioimagetools-1.1.4/bioimagetools/man/K.cross.3D.Rd | 18 bioimagetools-1.1.4/bioimagetools/man/L.cross.3D.Rd | 18 bioimagetools-1.1.4/bioimagetools/man/bwlabel3d.Rd | 2 bioimagetools-1.1.4/bioimagetools/man/cnnTest.Rd | 15 bioimagetools-1.1.4/bioimagetools/man/distance2border.Rd | 29 bioimagetools-1.1.4/bioimagetools/man/filterImage3d.Rd | 2 bioimagetools-1.1.4/bioimagetools/man/img.Rd | 14 bioimagetools-1.1.4/bioimagetools/man/nearest.neighbour.distribution.Rd | 26 bioimagetools-1.1.4/bioimagetools/man/nearestClassDistances.Rd | 15 bioimagetools-1.1.4/bioimagetools/man/outside.Rd | 2 bioimagetools-1.1.4/bioimagetools/man/plotNearestClassDistances.Rd | 10 bioimagetools-1.1.4/bioimagetools/man/readTIF.Rd | 3 bioimagetools-1.1.4/bioimagetools/man/segment.Rd | 30 bioimagetools-1.1.4/bioimagetools/man/segment.outside.Rd | 4 bioimagetools-1.1.4/bioimagetools/man/spots.Rd | 26 bioimagetools-1.1.4/bioimagetools/man/standardize.Rd | 5 bioimagetools-1.1.4/bioimagetools/man/table.n.Rd | 9 bioimagetools-1.1.4/bioimagetools/man/testColoc.Rd | 14 bioimagetools-1.1.4/bioimagetools/man/writeTIF.Rd | 11 42 files changed, 1778 insertions(+), 1380 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [ctb],
Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.7.15 dated 2018-11-09 and 1.7.16 dated 2020-01-15
DESCRIPTION | 8 +- MD5 | 26 ++++---- NEWS | 27 ++++++++ R/checker.R | 8 ++ R/gdbsource.R | 20 +++--- R/validation.R | 2 inst/examples/simple.cpp | 5 + inst/include/TMB.hpp | 10 +++ inst/include/convenience.hpp | 8 ++ inst/include/distributions_R.hpp | 12 ++- inst/include/dnorm.hpp | 7 -- inst/include/tmb_core.hpp | 83 +++++++++++++++++++------- inst/include/tmbutils/splines.hpp | 120 +++++++++++++++++++++++--------------- man/gdbsource.Rd | 3 14 files changed, 232 insertions(+), 107 deletions(-)
Title: Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Description: Enables quick calibration of radiocarbon dates under various
calibration curves (including user generated ones); age-depth modelling
as per the algorithm of Haslett and Parnell (2008) <DOI:10.1111/j.1467-9876.2008.00623.x>; Relative sea level
rate estimation incorporating time uncertainty in polynomial regression
models (Parnell and Gehrels 2015) <DOI:10.1002/9781118452547.ch32>; non-parametric phase modelling via
Gaussian mixtures as a means to determine the activity of a site
(and as an alternative to the Oxcal function SUM; currently
unpublished), and reverse calibration of dates from calibrated into
un-calibrated years (also unpublished).
Author: Andrew Parnell
Maintainer: Andrew Parnell <Andrew.Parnell@mu.ie>
Diff between Bchron versions 4.3.0 dated 2018-06-15 and 4.5.0 dated 2020-01-15
Bchron-4.3.0/Bchron/man/CreateCalCurve.Rd |only Bchron-4.5.0/Bchron/DESCRIPTION | 15 Bchron-4.5.0/Bchron/MD5 | 96 + Bchron-4.5.0/Bchron/NAMESPACE | 15 Bchron-4.5.0/Bchron/NEWS.md | 13 Bchron-4.5.0/Bchron/R/BchronCalibrate.R | 4 Bchron-4.5.0/Bchron/R/Bchronology.R | 2 Bchron-4.5.0/Bchron/R/CreateCalCurve.R | 17 Bchron-4.5.0/Bchron/R/choosePositions.BchronologyRun.R | 24 Bchron-4.5.0/Bchron/R/data.R | 20 Bchron-4.5.0/Bchron/R/plot.BchronCalibratedDates.R | 191 ++- Bchron-4.5.0/Bchron/R/plot.BchronRSLRun.R | 209 ++-- Bchron-4.5.0/Bchron/R/plot.BchronologyRun.R | 176 ++- Bchron-4.5.0/Bchron/R/summary.BchronologyRun.R | 6 Bchron-4.5.0/Bchron/R/utils-pipe.R |only Bchron-4.5.0/Bchron/build/vignette.rds |binary Bchron-4.5.0/Bchron/inst/CITATION | 2 Bchron-4.5.0/Bchron/inst/doc/Bchron.R | 252 +++-- Bchron-4.5.0/Bchron/inst/doc/Bchron.Rmd | 189 ++- Bchron-4.5.0/Bchron/inst/doc/Bchron.html | 726 ++++++++++----- Bchron-4.5.0/Bchron/man/Bchron.Rd | 1 Bchron-4.5.0/Bchron/man/BchronCalibrate.Rd | 17 Bchron-4.5.0/Bchron/man/BchronDensity.Rd | 17 Bchron-4.5.0/Bchron/man/BchronDensityFast.Rd | 12 Bchron-4.5.0/Bchron/man/BchronRSL.Rd | 11 Bchron-4.5.0/Bchron/man/Bchronology.Rd | 25 Bchron-4.5.0/Bchron/man/Glendalough.Rd | 2 Bchron-4.5.0/Bchron/man/Sluggan.Rd | 4 Bchron-4.5.0/Bchron/man/TestChronData.Rd | 2 Bchron-4.5.0/Bchron/man/TestRSLData.Rd | 2 Bchron-4.5.0/Bchron/man/choosePositions.Rd | 23 Bchron-4.5.0/Bchron/man/coreInfluence.Rd | 10 Bchron-4.5.0/Bchron/man/createCalCurve.Rd |only Bchron-4.5.0/Bchron/man/dateInfluence.Rd | 7 Bchron-4.5.0/Bchron/man/intcal13.Rd | 4 Bchron-4.5.0/Bchron/man/marine13.Rd | 4 Bchron-4.5.0/Bchron/man/normal.Rd | 2 Bchron-4.5.0/Bchron/man/pipe.Rd |only Bchron-4.5.0/Bchron/man/plot.BchronCalibratedDates.Rd | 31 Bchron-4.5.0/Bchron/man/plot.BchronDensityRun.Rd | 10 Bchron-4.5.0/Bchron/man/plot.BchronDensityRunFast.Rd | 3 Bchron-4.5.0/Bchron/man/plot.BchronRSLRun.Rd | 17 Bchron-4.5.0/Bchron/man/plot.BchronologyRun.Rd | 42 Bchron-4.5.0/Bchron/man/predict.BchronologyRun.Rd | 9 Bchron-4.5.0/Bchron/man/shcal13.Rd | 4 Bchron-4.5.0/Bchron/man/summary.BchronCalibratedDates.Rd | 3 Bchron-4.5.0/Bchron/man/summary.BchronDensityRun.Rd | 3 Bchron-4.5.0/Bchron/man/summary.BchronRSLRun.Rd | 8 Bchron-4.5.0/Bchron/man/summary.BchronologyRun.Rd | 13 Bchron-4.5.0/Bchron/man/unCalibrate.Rd | 9 Bchron-4.5.0/Bchron/vignettes/Bchron.Rmd | 189 ++- 51 files changed, 1568 insertions(+), 873 deletions(-)
Title: Quadratic Programming with Absolute Value Constraints
Description: Extends the quadprog package to solve quadratic programs with
absolute value constraints and absolute values in the objective function.
Author: Bob Harlow [aut, cre]
Maintainer: Bob Harlow <rharlow86@gmail.com>
Diff between quadprogXT versions 0.0.4 dated 2019-02-17 and 0.0.5 dated 2020-01-15
quadprogXT-0.0.4/quadprogXT/tests/testthat |only quadprogXT-0.0.4/quadprogXT/tests/testthat.R |only quadprogXT-0.0.5/quadprogXT/DESCRIPTION | 10 +++++----- quadprogXT-0.0.5/quadprogXT/MD5 | 19 +++++++++---------- quadprogXT-0.0.5/quadprogXT/R/normalizeConstraints.R | 2 +- quadprogXT-0.0.5/quadprogXT/R/solveQPXT.R | 9 +++++---- quadprogXT-0.0.5/quadprogXT/inst |only quadprogXT-0.0.5/quadprogXT/man/solveQPXT.Rd | 7 ++++--- quadprogXT-0.0.5/quadprogXT/tests/tinytest.R |only 9 files changed, 24 insertions(+), 23 deletions(-)
Title: Distance Sampling Survey Design
Description: Creates survey designs for distance sampling surveys. These
designs can be assessed for various effort and coverage statistics.
Once the user is satisfied with the design characteristics they can
generate a set of transects to use in their distance sampling survey.
Many of the designs implemented in this R package were first made
available in our 'Distance' for Windows software and are detailed in
Chapter 7 of Advanced Distance Sampling, Buckland et. al. (2008,
ISBN-13: 978-0199225873). Find out more about estimating animal/plant
abundance with distance sampling at <http://distancesampling.org/>.
Author: Laura Marshall <lhm@st-andrews.ac.uk>
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>
Diff between dssd versions 0.1.0 dated 2019-08-05 and 0.2.0 dated 2020-01-15
dssd-0.1.0/dssd/inst/extdata/AreaRProjStrata.sbn |only dssd-0.1.0/dssd/inst/extdata/AreaRProjStrata.sbx |only dssd-0.1.0/dssd/inst/extdata/AreaRStrata.sbn |only dssd-0.1.0/dssd/inst/extdata/AreaRStrata.sbx |only dssd-0.2.0/dssd/DESCRIPTION | 21 + dssd-0.2.0/dssd/MD5 | 116 ++++++---- dssd-0.2.0/dssd/NAMESPACE | 6 dssd-0.2.0/dssd/NEWS | 25 +- dssd-0.2.0/dssd/R/Class.Constructors.R | 130 ++++++++--- dssd-0.2.0/dssd/R/Coverage.Grid.R | 3 dssd-0.2.0/dssd/R/Line.Transect.Design.R | 55 +++- dssd-0.2.0/dssd/R/Line.Transect.R | 18 + dssd-0.2.0/dssd/R/Point.Transect.Design.R | 21 + dssd-0.2.0/dssd/R/Point.Transect.R | 7 dssd-0.2.0/dssd/R/Region.R | 38 +-- dssd-0.2.0/dssd/R/Segment.Transect.Design.R |only dssd-0.2.0/dssd/R/Segment.Transect.R |only dssd-0.2.0/dssd/R/Survey.Design.R | 93 ++++++-- dssd-0.2.0/dssd/R/calculate.trackline.segl.R |only dssd-0.2.0/dssd/R/check.line.design.R | 46 +++- dssd-0.2.0/dssd/R/check.point.design.R | 24 +- dssd-0.2.0/dssd/R/dssd-package.R |only dssd-0.2.0/dssd/R/generate.random.points.R | 18 - dssd-0.2.0/dssd/R/generate.segmented.grid.R |only dssd-0.2.0/dssd/R/generic.functions.R | 49 +++- dssd-0.2.0/dssd/R/line.coords.as.dataframe.R |only dssd-0.2.0/dssd/R/point.coords.as.dataframe.R |only dssd-0.2.0/dssd/R/run.coverage.R | 15 - dssd-0.2.0/dssd/R/write.transects.R | 158 +++++++++++++- dssd-0.2.0/dssd/build/vignette.rds |binary dssd-0.2.0/dssd/inst/doc/GettingStarted.R | 10 dssd-0.2.0/dssd/inst/doc/GettingStarted.Rmd | 29 +- dssd-0.2.0/dssd/inst/doc/GettingStarted.html | 42 +-- dssd-0.2.0/dssd/inst/doc/MultiStrataVignette.R |only dssd-0.2.0/dssd/inst/doc/MultiStrataVignette.Rmd |only dssd-0.2.0/dssd/inst/doc/MultiStrataVignette.html |only dssd-0.2.0/dssd/inst/extdata/AreaRProjStrata.dbf |binary dssd-0.2.0/dssd/inst/extdata/AreaRProjStrata.shp |binary dssd-0.2.0/dssd/inst/extdata/AreaRProjStrata.shx |binary dssd-0.2.0/dssd/inst/extdata/AreaRStrata.dbf |binary dssd-0.2.0/dssd/inst/extdata/AreaRStrata.shp |binary dssd-0.2.0/dssd/inst/extdata/Strata.dbf |only dssd-0.2.0/dssd/inst/extdata/Strata.prj |only dssd-0.2.0/dssd/inst/extdata/Strata.sbx |only dssd-0.2.0/dssd/inst/extdata/Strata.shp |only dssd-0.2.0/dssd/inst/extdata/Strata.shx |only dssd-0.2.0/dssd/inst/extdata/vigresults/GSdesign.robj |binary dssd-0.2.0/dssd/inst/extdata/vigresults/design_seg.robj |only dssd-0.2.0/dssd/inst/extdata/vigresults/design_zz_sp.robj |only dssd-0.2.0/dssd/man/Line.Transect-class.Rd | 2 dssd-0.2.0/dssd/man/Line.Transect.Design-class.Rd | 8 dssd-0.2.0/dssd/man/Point.Transect.Design-class.Rd | 4 dssd-0.2.0/dssd/man/Segment.Transect-class.Rd |only dssd-0.2.0/dssd/man/Segment.Transect.Design-class.Rd |only dssd-0.2.0/dssd/man/Survey.Design-class.Rd | 19 + dssd-0.2.0/dssd/man/dssd-package.Rd |only dssd-0.2.0/dssd/man/generate.transects-methods.Rd | 49 +++- dssd-0.2.0/dssd/man/get.coverage-methods.Rd | 12 - dssd-0.2.0/dssd/man/make.coverage.Rd | 6 dssd-0.2.0/dssd/man/make.design.Rd | 103 ++++++--- dssd-0.2.0/dssd/man/make.region.Rd | 2 dssd-0.2.0/dssd/man/plot.Coverage.Grid-methods.Rd | 3 dssd-0.2.0/dssd/man/plot.Region-methods.Rd | 14 - dssd-0.2.0/dssd/man/plot.Survey.Design-methods.Rd | 16 + dssd-0.2.0/dssd/man/plot.Transect-methods.Rd | 8 dssd-0.2.0/dssd/man/run.coverage.Rd | 14 + dssd-0.2.0/dssd/man/write.transects.Rd | 87 ++++++- dssd-0.2.0/dssd/tests/testthat/test-SegmentedDesign.r |only dssd-0.2.0/dssd/tests/testthat/test-UserInput.r | 41 +++ dssd-0.2.0/dssd/tests/testthat/test-xdonttest.R |only dssd-0.2.0/dssd/vignettes/GettingStarted.Rmd | 29 +- dssd-0.2.0/dssd/vignettes/MultiStrataVignette.Rmd |only dssd-0.2.0/dssd/vignettes/images/efficiencystrats.png |only 73 files changed, 1016 insertions(+), 325 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', and 'SQLite'). Also includes support for
fetching data as 'ffdf' objects. Uses 'Java Database Connectivity' ('JDBC') to connect to databases (except SQLite).
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] (SQL Server JDBC driver),
PostgreSQL Global Development Group [cph] (PostgreSQL JDBC driver),
Oracle Inc. [cph] (Oracle JDBC driver),
Amazon Inc. [cph] (RedShift JDBC driver)
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 2.4.1 dated 2019-07-18 and 2.4.2 dated 2020-01-15
DESCRIPTION | 12 MD5 | 132 NAMESPACE | 2 NEWS.md | 14 R/Compression.R | 2 R/Connect.R | 4 R/DBI.R | 2 R/DatabaseConnector.R | 2 R/InsertTable.R | 176 R/ListTables.R | 2 R/RStudio.R | 4 R/Sql.R | 4 build/DatabaseConnector.pdf |13459 +++++----- build/vignette.rds |binary inst/doc/UsingDatabaseConnector.pdf |binary man/DatabaseConnector.Rd | 1 man/DatabaseConnectorConnection-class.Rd | 18 man/DatabaseConnectorDbiConnection-class.Rd | 18 man/DatabaseConnectorDriver-class.Rd | 18 man/DatabaseConnectorDriver.Rd | 20 man/DatabaseConnectorJdbcConnection-class.Rd | 18 man/DatabaseConnectorResult-class.Rd | 18 man/connect.Rd | 398 man/createConnectionDetails.Rd | 354 man/createZipFile.Rd | 3 man/dbAppendTable-DatabaseConnectorConnection-character-data.frame-method.Rd | 64 man/dbClearResult-DatabaseConnectorResult-method.Rd | 28 man/dbColumnInfo-DatabaseConnectorResult-method.Rd | 30 man/dbConnect-DatabaseConnectorDriver-method.Rd | 1 man/dbCreateTable-DatabaseConnectorConnection-character-data.frame-method.Rd | 60 man/dbDisconnect-DatabaseConnectorConnection-method.Rd | 35 man/dbExecute-DatabaseConnectorConnection-character-method.Rd | 46 man/dbExistsTable-DatabaseConnectorConnection-character-method.Rd | 40 man/dbFetch-DatabaseConnectorResult-method.Rd | 37 man/dbGetQuery-DatabaseConnectorConnection-character-method.Rd | 48 man/dbGetRowCount-DatabaseConnectorResult-method.Rd | 37 man/dbGetRowsAffected-DatabaseConnectorResult-method.Rd | 35 man/dbGetStatement-DatabaseConnectorResult-method.Rd | 37 man/dbHasCompleted-DatabaseConnectorResult-method.Rd | 35 man/dbIsValid-DatabaseConnectorDbiConnection-method.Rd | 84 man/dbIsValid-DatabaseConnectorJdbcConnection-method.Rd | 84 man/dbListFields-DatabaseConnectorConnection-character-method.Rd | 40 man/dbListTables-DatabaseConnectorConnection-method.Rd | 40 man/dbQuoteIdentifier-DatabaseConnectorConnection-character-method.Rd | 42 man/dbQuoteString-DatabaseConnectorConnection-character-method.Rd | 38 man/dbReadTable-DatabaseConnectorConnection-character-method.Rd | 57 man/dbRemoveTable-DatabaseConnectorConnection-character-method.Rd | 49 man/dbSendQuery-DatabaseConnectorDbiConnection-character-method.Rd | 56 man/dbSendQuery-DatabaseConnectorJdbcConnection-character-method.Rd | 56 man/dbSendStatement-DatabaseConnectorConnection-character-method.Rd | 60 man/dbUnloadDriver-DatabaseConnectorDriver-method.Rd | 29 man/dbWriteTable-DatabaseConnectorConnection-character-data.frame-method.Rd | 54 man/disconnect.Rd | 54 man/executeSql.Rd | 12 man/getTableNames.Rd | 54 man/insertTable.Rd | 16 man/jdbcDrivers.Rd | 106 man/lowLevelExecuteSql.Rd | 30 man/lowLevelQuerySql.Rd | 54 man/lowLevelQuerySql.ffdf.Rd | 58 man/querySql.Rd | 8 man/querySql.ffdf.Rd | 8 man/renderTranslateExecuteSql.Rd | 15 man/renderTranslateQuerySql.Rd | 9 man/renderTranslateQuerySql.ffdf.Rd | 9 man/show-DatabaseConnectorConnection-method.Rd | 11 man/show-DatabaseConnectorDriver-method.Rd | 11 67 files changed, 8464 insertions(+), 7894 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: Management of Deterministic and Stochastic Projects
Description: Management problems of deterministic and stochastic projects. It obtains the duration of a project and the appropriate slack for each activity in a deterministic context. In addition it obtains a schedule of activities' time (Castro, Gómez & Tejada (2007) <doi:10.1016/j.orl.2007.01.003>). It also allows the management of resources. When the project is done, and the actual duration for each activity is known, then it can know how long the project is delayed and make a fair delivery of the delay between each activity (Bergantiños, Valencia-Toledo & Vidal-Puga (2018) <doi:10.1016/j.dam.2017.08.012>). In a stochastic context it can estimate the average duration of the project and plot the density of this duration, as well as, the density of the early and last times of the chosen activities. As in the deterministic case, it can make a distribution of the delay generated by observing the project already carried out.
Author: Juan Carlos Gonçalves Dosantos [aut, cre],
Ignacio García Jurado [aut],
Julián Costa Bouzas [aut]
Maintainer: Juan Carlos Gonçalves Dosantos <juan.carlos.goncalves@udc.es>
Diff between ProjectManagement versions 1.2.3 dated 2019-12-12 and 1.2.4 dated 2020-01-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/function_pert_calendario.R | 4 ++-- R/function_pert_demora.R | 4 ++-- R/function_pert_estocastico.R | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
More information about ProjectManagement at CRAN
Permanent link
Title: Versatile Curation of Table Metadata
Description: The 'yamlet' package implements a file-based
mechanism for documenting datasets. It reads and writes
YAML-formatted metadata and applies it as data
item attributes. Data and metadata are stored independently
but can be coordinated by using similar file paths with
different extensions. The 'yamlet' dialect is valid 'YAML',
but some conventions are chosen to improve readability.
Defaults and conventions can be over-ridden by the user.
See ?yamlet and ?decorate.data.frame.
See ?read_yamlet ?write_yamlet, and ?io_csv.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.2.1 dated 2019-12-13 and 0.3.1 dated 2020-01-15
yamlet-0.2.1/yamlet/inst/extdata/yamlet.csv |only yamlet-0.2.1/yamlet/inst/extdata/yamlet.yaml |only yamlet-0.2.1/yamlet/man/deflate.Rd |only yamlet-0.2.1/yamlet/man/deflate.default.Rd |only yamlet-0.2.1/yamlet/man/deflate.list.Rd |only yamlet-0.3.1/yamlet/DESCRIPTION | 30 yamlet-0.3.1/yamlet/MD5 | 110 ++- yamlet-0.3.1/yamlet/NAMESPACE | 29 yamlet-0.3.1/yamlet/R/agplot.R |only yamlet-0.3.1/yamlet/R/io_csv.R |only yamlet-0.3.1/yamlet/R/io_table.R |only yamlet-0.3.1/yamlet/R/io_yamlet.R |only yamlet-0.3.1/yamlet/R/package.R | 14 yamlet-0.3.1/yamlet/R/yamlet.R | 664 +++++++++++++-------- yamlet-0.3.1/yamlet/build |only yamlet-0.3.1/yamlet/inst/doc |only yamlet-0.3.1/yamlet/inst/extdata/phenobarb.csv |only yamlet-0.3.1/yamlet/inst/extdata/phenobarb.yaml |only yamlet-0.3.1/yamlet/inst/extdata/quinidine.csv |only yamlet-0.3.1/yamlet/inst/extdata/quinidine.yaml |only yamlet-0.3.1/yamlet/man/agplot.Rd | 70 +- yamlet-0.3.1/yamlet/man/as.character.yam.Rd | 79 +- yamlet-0.3.1/yamlet/man/as.character.yamlet.Rd | 82 +- yamlet-0.3.1/yamlet/man/as_lab.Rd | 51 - yamlet-0.3.1/yamlet/man/as_lab.list.Rd | 93 +- yamlet-0.3.1/yamlet/man/as_yam.Rd | 54 - yamlet-0.3.1/yamlet/man/as_yam.character.Rd | 79 +- yamlet-0.3.1/yamlet/man/as_yam.yamlet.Rd | 83 +- yamlet-0.3.1/yamlet/man/as_yamlet.Rd | 67 +- yamlet-0.3.1/yamlet/man/as_yamlet.character.Rd | 99 +-- yamlet-0.3.1/yamlet/man/as_yamlet.data.frame.Rd | 61 + yamlet-0.3.1/yamlet/man/as_yamlet.yam.Rd | 73 +- yamlet-0.3.1/yamlet/man/as_yamlet.yamlet.Rd |only yamlet-0.3.1/yamlet/man/decorate.Rd | 89 +- yamlet-0.3.1/yamlet/man/decorate.character.Rd | 156 +++- yamlet-0.3.1/yamlet/man/decorate.data.frame.Rd | 100 +-- yamlet-0.3.1/yamlet/man/decorate.list.Rd | 106 ++- yamlet-0.3.1/yamlet/man/decorations.Rd | 66 +- yamlet-0.3.1/yamlet/man/decorations.data.frame.Rd | 93 +- yamlet-0.3.1/yamlet/man/encode.yamlet.Rd | 64 +- yamlet-0.3.1/yamlet/man/io_csv.Rd |only yamlet-0.3.1/yamlet/man/io_csv.character.Rd |only yamlet-0.3.1/yamlet/man/io_csv.data.frame.Rd |only yamlet-0.3.1/yamlet/man/io_table.Rd |only yamlet-0.3.1/yamlet/man/io_table.character.Rd |only yamlet-0.3.1/yamlet/man/io_table.data.frame.Rd |only yamlet-0.3.1/yamlet/man/io_yamlet.Rd |only yamlet-0.3.1/yamlet/man/io_yamlet.character.Rd |only yamlet-0.3.1/yamlet/man/io_yamlet.data.frame.Rd |only yamlet-0.3.1/yamlet/man/io_yamlet.yamlet.Rd |only yamlet-0.3.1/yamlet/man/isConditional.Rd |only yamlet-0.3.1/yamlet/man/isConditional.character.Rd |only yamlet-0.3.1/yamlet/man/isConditional.default.Rd |only yamlet-0.3.1/yamlet/man/isLevels.Rd |only yamlet-0.3.1/yamlet/man/isLevels.character.Rd |only yamlet-0.3.1/yamlet/man/isLevels.default.Rd |only yamlet-0.3.1/yamlet/man/list2encoding.Rd | 64 +- yamlet-0.3.1/yamlet/man/print.ag.Rd | 123 ++- yamlet-0.3.1/yamlet/man/print.yamlet.Rd |only yamlet-0.3.1/yamlet/man/read_yamlet.Rd |only yamlet-0.3.1/yamlet/man/reexports.Rd | 30 yamlet-0.3.1/yamlet/man/singularity.Rd |only yamlet-0.3.1/yamlet/man/sub-.yamlet.Rd | 64 +- yamlet-0.3.1/yamlet/man/to_yamlet.NULL.Rd | 58 - yamlet-0.3.1/yamlet/man/to_yamlet.Rd | 58 - yamlet-0.3.1/yamlet/man/to_yamlet.character.Rd | 63 + yamlet-0.3.1/yamlet/man/to_yamlet.default.Rd | 63 + yamlet-0.3.1/yamlet/man/to_yamlet.list.Rd | 62 + yamlet-0.3.1/yamlet/man/unnest.Rd |only yamlet-0.3.1/yamlet/man/unnest.default.Rd |only yamlet-0.3.1/yamlet/man/unnest.list.Rd |only yamlet-0.3.1/yamlet/man/write_yamlet.Rd |only yamlet-0.3.1/yamlet/man/yamlet.Rd | 189 +++-- yamlet-0.3.1/yamlet/tests |only yamlet-0.3.1/yamlet/vignettes |only 75 files changed, 1865 insertions(+), 1321 deletions(-)
Title: Serialize R Objects to JSON, JavaScript Object Notation
Description: This is a package that allows conversion to and from
data in Javascript object notation (JSON) format.
This allows R objects to be inserted into Javascript/ECMAScript/ActionScript code
and allows R programmers to read and convert JSON content to R objects.
This is an alternative to rjson package. Originally, that was too slow for converting large R objects to JSON
and was not extensible. rjson's performance is now similar to this package, and perhaps slightly faster in some cases.
This package uses methods and is readily extensible by defining methods for different classes,
vectorized operations, and C code and callbacks to R functions for deserializing JSON objects to R.
The two packages intentionally share the same basic interface. This package (RJSONIO) has many additional
options to allow customizing the generation and processing of JSON content.
This package uses libjson rather than implementing yet another JSON parser. The aim is to support
other general projects by building on their work, providing feedback and benefit from their ongoing development.
Author: CRAN Team [ctb, cre] (de facto maintainer since 2014),
Duncan Temple Lang [aut] (<https://orcid.org/0000-0003-0159-1546>),
Jonathan Wallace [aut] (aka ninja9578, author of included libjson
sources)
Maintainer: CRAN Team <CRAN@r-project.org>
Diff between RJSONIO versions 1.3-1.3 dated 2019-10-03 and 1.3-1.4 dated 2020-01-15
DESCRIPTION | 25 +++++++++++++------------ MD5 | 6 +++--- inst/doc/Changes.html | 40 ++++++++++++++++++++-------------------- inst/doc/overview.html | 5 ++--- 4 files changed, 38 insertions(+), 38 deletions(-)
Title: Visualisation Toolbox for 'easystats' and Extra Geoms, Themes
and Color Palettes for 'ggplot2'
Description: Provides plotting utilities supporting easystats-packages (<https://github.com/easystats/easystats>)
and some extra themes, geoms, and scales for 'ggplot2'. Color scales are
based on <https://www.materialui.co/colors>.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, inv] (<https://orcid.org/0000-0001-5375-9967>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between see versions 0.3.0 dated 2019-11-19 and 0.4.0 dated 2020-01-15
DESCRIPTION | 10 MD5 | 96 +++--- NAMESPACE | 8 NEWS.md | 21 + R/coord_radar.R | 6 R/data_plot.R | 18 + R/geom_point2.R | 2 R/plot.bayesfactor_models.R | 19 - R/plot.compare_performance.R |only R/plot.equivalence_test.R | 2 R/plot.estimate_density.R | 9 R/plot.hdi.R | 21 + R/plot.p_direction.R | 10 R/plot.p_significance.R | 10 R/plot.parameters_model.R | 27 + R/plot.parameters_pca.R | 1 R/plot.point_estimates.R | 14 R/plot.rope.R | 8 R/plot.si.R |only R/plots.R | 14 R/theme_radar.R |only man/add_plot_attributes.Rd | 78 ++--- man/coord_radar.Rd | 72 ++-- man/data_plot.Rd | 627 ++++++++++++++++++++++++------------------- man/flat_colors.Rd | 46 +-- man/geom_point2.Rd | 76 ++--- man/geom_poolpoint.Rd | 101 +++--- man/geom_violindot.Rd | 171 ++++++----- man/geom_violinhalf.Rd | 160 +++++----- man/ggplot2-ggproto.Rd | 18 - man/material_colors.Rd | 46 +-- man/metro_colors.Rd | 46 +-- man/palette_flat.Rd | 44 +-- man/palette_material.Rd | 44 +-- man/palette_metro.Rd | 44 +-- man/palette_pizza.Rd | 46 +-- man/palette_social.Rd | 44 +-- man/pizza_colors.Rd | 32 +- man/plots.Rd | 64 ++-- man/reexports.Rd | 30 +- man/scale_color_flat.Rd | 160 +++++----- man/scale_color_material.Rd | 186 +++++++----- man/scale_color_metro.Rd | 181 +++++++----- man/scale_color_pizza.Rd | 173 ++++++----- man/scale_color_social.Rd | 186 +++++++----- man/social_colors.Rd | 46 +-- man/theme_abyss.Rd | 124 ++++---- man/theme_blackboard.Rd | 124 ++++---- man/theme_lucid.Rd | 124 ++++---- man/theme_modern.Rd | 124 ++++---- man/theme_radar.Rd |only 51 files changed, 1968 insertions(+), 1545 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-10 0.3.0
2019-10-04 0.2.7
2019-07-10 0.2.6
2019-06-22 0.2.5
2019-02-20 0.2.2
2019-01-23 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-13 1.0.1
2010-11-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-22 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-17 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-03 0.8-7
2012-02-26 0.8-5
2011-10-23 0.8-4
2011-03-06 0.8-3
2011-01-08 0.8-2
2010-08-16 0.8.1
2010-02-11 0.8.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-19 1.1
2014-03-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-13 2.2
2014-06-19 2.1
2013-04-04 2.0
2012-07-06 1.3
2012-03-05 1.2
2012-02-06 1.1
2010-12-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-21 3.0
2014-05-10 2.1
2014-05-03 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-10 2.0.4
2014-12-11 2.0.3
2011-10-10 2.0.2
2011-03-21 2.0.1
2009-03-04 2.0.0
2008-10-22 1.5.7
2008-10-10 1.5.6
2008-09-11 1.5.5
2008-07-07 1.5.4
2008-07-05 1.5.3
2008-04-22 1.2.5
2008-04-02 1.2.4
2008-02-29 1.2.2
2008-01-14 1.2.1
2007-12-07 1.2.0
2007-05-07 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-14 0.1.1
2017-06-12 0.1.0
Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics,
performing raster-based analysis, processing MODFLOW-based models,
selecting subsets using a genetic algorithm, creating interactive web maps,
accessing color palettes, etc. Used to support packages and scripts written
by researchers at the United States Geological Survey (USGS)
Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre] (<https://orcid.org/0000-0001-9032-8912>)
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inlmisc versions 0.4.8 dated 2019-09-23 and 0.4.9 dated 2020-01-15
inlmisc-0.4.8/inlmisc/inst/raw |only inlmisc-0.4.9/inlmisc/DESCRIPTION | 8 inlmisc-0.4.9/inlmisc/MD5 | 184 +-- inlmisc-0.4.9/inlmisc/NAMESPACE | 2 inlmisc-0.4.9/inlmisc/NEWS.md | 329 ++--- inlmisc-0.4.9/inlmisc/R/AddPoints.R | 1 inlmisc-0.4.9/inlmisc/R/FindOptimalSubset.R | 26 inlmisc-0.4.9/inlmisc/R/PlotMap.R | 15 inlmisc-0.4.9/inlmisc/R/SetHinge.R | 2 inlmisc-0.4.9/inlmisc/R/sysdata.rda |binary inlmisc-0.4.9/inlmisc/README.md | 11 inlmisc-0.4.9/inlmisc/inst/CITATION | 15 inlmisc-0.4.9/inlmisc/inst/misc/preamble.tex | 1 inlmisc-0.4.9/inlmisc/inst/rmarkdown/templates/usgs_article/skeleton/usgs.sty | 1 inlmisc-0.4.9/inlmisc/man/AddColorKey.Rd | 181 +-- inlmisc-0.4.9/inlmisc/man/AddGradientLegend.Rd | 152 +- inlmisc-0.4.9/inlmisc/man/AddInsetMap.Rd | 149 +- inlmisc-0.4.9/inlmisc/man/AddIntervals.Rd | 151 +- inlmisc-0.4.9/inlmisc/man/AddNorthArrow.Rd | 109 - inlmisc-0.4.9/inlmisc/man/AddPoints.Rd | 379 +++--- inlmisc-0.4.9/inlmisc/man/AddScaleBar.Rd | 146 +- inlmisc-0.4.9/inlmisc/man/AddWebMapElements.Rd | 253 ++-- inlmisc-0.4.9/inlmisc/man/BuildVignettes.Rd | 90 - inlmisc-0.4.9/inlmisc/man/BumpDisconnectCells.Rd | 117 +- inlmisc-0.4.9/inlmisc/man/BumpRiverStage.Rd | 84 - inlmisc-0.4.9/inlmisc/man/CreateWebMap.Rd | 126 +- inlmisc-0.4.9/inlmisc/man/Deprecated.Rd | 40 inlmisc-0.4.9/inlmisc/man/EncodeChromosome.Rd | 94 - inlmisc-0.4.9/inlmisc/man/ExportRasterStack.Rd | 140 +- inlmisc-0.4.9/inlmisc/man/ExtractAlongTransect.Rd | 164 +- inlmisc-0.4.9/inlmisc/man/FindOptimalSubset.Rd | 316 +++-- inlmisc-0.4.9/inlmisc/man/FindPolyNodes.Rd | 56 - inlmisc-0.4.9/inlmisc/man/FormatPval.Rd | 105 + inlmisc-0.4.9/inlmisc/man/GetColors.Rd | 489 ++++---- inlmisc-0.4.9/inlmisc/man/GetDaysInMonth.Rd | 54 inlmisc-0.4.9/inlmisc/man/GetInsetLocation.Rd | 127 +- inlmisc-0.4.9/inlmisc/man/GetRegionOfInterest.Rd | 144 +- inlmisc-0.4.9/inlmisc/man/Grid2Polygons.Rd | 312 ++--- inlmisc-0.4.9/inlmisc/man/IsColor.Rd | 58 - inlmisc-0.4.9/inlmisc/man/IsPackageInstalled.Rd | 58 - inlmisc-0.4.9/inlmisc/man/POSIXct2Character.Rd | 102 - inlmisc-0.4.9/inlmisc/man/PlotCrossSection.Rd | 444 ++++---- inlmisc-0.4.9/inlmisc/man/PlotGraph.Rd | 365 +++--- inlmisc-0.4.9/inlmisc/man/PlotMap.Rd | 549 +++++----- inlmisc-0.4.9/inlmisc/man/PrintFigure.Rd | 198 +-- inlmisc-0.4.9/inlmisc/man/PrintPackageHelp.Rd | 148 +- inlmisc-0.4.9/inlmisc/man/PrintTable.Rd | 320 +++-- inlmisc-0.4.9/inlmisc/man/ReadCodeChunks.Rd | 84 - inlmisc-0.4.9/inlmisc/man/ReadModflowBinary.Rd | 150 +- inlmisc-0.4.9/inlmisc/man/RecreateLibrary.Rd | 308 ++--- inlmisc-0.4.9/inlmisc/man/ReplaceInTemplate.Rd | 92 - inlmisc-0.4.9/inlmisc/man/RmSmallCellChunks.Rd | 78 - inlmisc-0.4.9/inlmisc/man/SetHinge.Rd | 326 +++-- inlmisc-0.4.9/inlmisc/man/SetPolygons.Rd | 143 +- inlmisc-0.4.9/inlmisc/man/SummariseBudget.Rd | 130 +- inlmisc-0.4.9/inlmisc/man/ToScientific.Rd | 152 +- inlmisc-0.4.9/inlmisc/man/figures/table01.pdf |binary inlmisc-0.4.9/inlmisc/man/figures/table01.svg | 2 inlmisc-0.4.9/inlmisc/man/figures/table02.pdf |binary inlmisc-0.4.9/inlmisc/man/figures/table02.svg | 2 inlmisc-0.4.9/inlmisc/man/figures/table03.pdf |binary inlmisc-0.4.9/inlmisc/man/figures/table03.svg | 2 inlmisc-0.4.9/inlmisc/man/figures/table04.pdf |binary inlmisc-0.4.9/inlmisc/man/figures/table04.svg | 2 inlmisc-0.4.9/inlmisc/man/figures/table05.pdf |binary inlmisc-0.4.9/inlmisc/man/figures/table05.svg | 2 inlmisc-0.4.9/inlmisc/man/usgs_article.Rd | 68 - 67 files changed, 4239 insertions(+), 4117 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-09 2.0-7.3
2019-08-02 2.0-7.2
2019-07-21 2.0-7.1
2018-07-02 2.0-7
2018-01-05 2.0-6
2017-09-17 2.0-5
2017-08-24 2.0-4
2017-08-20 2.0-3
2015-06-11 2.0-2
2013-03-04 2.0-0
2013-01-30 1.9-1
2012-11-06 1.9-0
2012-07-10 1.8-5
2011-07-05 1.8-1
2011-03-23 1.8-0
2010-10-29 1.7-0
2010-08-13 1.6-0
2010-01-14 1.5-1
2009-12-30 1.5-0
2009-10-16 1.4-0
2009-05-28 1.3-0
2009-04-20 1.2-0
2009-02-23 1.1-1
2009-02-10 1.1-0
2008-12-06 1.0-1
2008-10-16 1.0-0
Title: Exemplar Data Sets for Student Growth Percentiles (SGP) Analyses
Description: Data sets utilized by the 'SGP' package as exemplars for users to conduct their own student growth percentiles (SGP) analyses.
Author: Damian W. Betebenner [aut, cre],
Adam R. Van Iwaarden [aut],
Ben Domingue [aut]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between SGPdata versions 21.0-0.0 dated 2019-01-04 and 23.0-0.0 dated 2020-01-15
DESCRIPTION | 14 +++---- MD5 | 30 ++++++++------- R/zzz.R | 2 - build/vignette.rds |binary data/sgpData.rda |binary data/sgpData_INSTRUCTOR_NUMBER.rda |binary data/sgpData_LONG.rda |binary data/sgptData_LONG.rda |binary inst/CITATION | 8 ++-- inst/NEWS | 8 ++++ inst/doc/SGPdata.Rmd | 2 - inst/doc/SGPdata.html | 64 +++++++++++++++++++++++--------- man/SGPdata-package.Rd | 4 +- man/sgpData.Rd | 4 +- vignettes/SGPdata.Rmd | 2 - vignettes/releases/SGPdata-22.0-0.0.Rmd |only vignettes/releases/SGPdata-23.0-0.0.Rmd |only 17 files changed, 88 insertions(+), 50 deletions(-)
Title: Amazon Web Services Software Development Kit
Description: Interface to Amazon Web Services <https://aws.amazon.com>,
including storage, database, and compute services, such as 'Simple
Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda'
functions-as-a-service.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws versions 0.1.5 dated 2019-10-21 and 0.1.6 dated 2020-01-15
paws-0.1.5/paws/NEWS.md |only paws-0.1.6/paws/DESCRIPTION | 20 paws-0.1.6/paws/MD5 | 271 +- paws-0.1.6/paws/NAMESPACE | 268 +- paws-0.1.6/paws/R/paws.R | 1639 ++++++++++------- paws-0.1.6/paws/man/acm.Rd | 124 - paws-0.1.6/paws/man/acmpca.Rd | 156 - paws-0.1.6/paws/man/apigateway.Rd | 338 +-- paws-0.1.6/paws/man/apigatewaymanagementapi.Rd | 106 - paws-0.1.6/paws/man/apigatewayv2.Rd | 212 +- paws-0.1.6/paws/man/applicationautoscaling.Rd | 192 + paws-0.1.6/paws/man/applicationinsights.Rd | 166 - paws-0.1.6/paws/man/appmesh.Rd | 174 - paws-0.1.6/paws/man/athena.Rd | 160 - paws-0.1.6/paws/man/autoscaling.Rd | 226 +- paws-0.1.6/paws/man/autoscalingplans.Rd | 128 - paws-0.1.6/paws/man/backup.Rd | 182 - paws-0.1.6/paws/man/batch.Rd | 160 - paws-0.1.6/paws/man/budgets.Rd | 198 +- paws-0.1.6/paws/man/clouddirectory.Rd | 236 +- paws-0.1.6/paws/man/cloudformation.Rd | 228 +- paws-0.1.6/paws/man/cloudfront.Rd | 186 - paws-0.1.6/paws/man/cloudhsm.Rd | 144 - paws-0.1.6/paws/man/cloudhsmv2.Rd | 116 - 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paws-0.1.6/paws/man/servicecatalog.Rd | 262 +- paws-0.1.6/paws/man/servicediscovery.Rd | 144 - paws-0.1.6/paws/man/servicequotas.Rd | 146 - paws-0.1.6/paws/man/ses.Rd | 248 +- paws-0.1.6/paws/man/sfn.Rd | 170 - paws-0.1.6/paws/man/shield.Rd | 138 - paws-0.1.6/paws/man/simpledb.Rd | 110 - paws-0.1.6/paws/man/sns.Rd | 182 - paws-0.1.6/paws/man/sqs.Rd | 190 - paws-0.1.6/paws/man/ssm.Rd | 370 +-- paws-0.1.6/paws/man/storagegateway.Rd | 356 +-- paws-0.1.6/paws/man/sts.Rd | 296 +-- paws-0.1.6/paws/man/support.Rd | 216 +- paws-0.1.6/paws/man/swf.Rd | 190 - paws-0.1.6/paws/man/textract.Rd | 106 - paws-0.1.6/paws/man/transcribeservice.Rd | 113 - paws-0.1.6/paws/man/translate.Rd | 106 - paws-0.1.6/paws/man/waf.Rd | 260 +- paws-0.1.6/paws/man/wafregional.Rd | 270 +- 137 files changed, 14461 insertions(+), 13685 deletions(-)
Title: Meditation Timer
Description: A simple meditation timer that logs session information.
Author: Jason C. Fisher [aut, cre] (<https://orcid.org/0000-0001-9032-8912>)
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between meditate versions 0.1.2 dated 2019-12-15 and 0.1.3 dated 2020-01-15
DESCRIPTION | 9 +++--- MD5 | 22 +++++++++------- NAMESPACE | 1 NEWS.md | 10 ++++++- R/Meditate.R | 70 ++++++++++++++++++++++++++++++++++++++++------------ R/PlotMandala.R |only R/ReadSessions.R | 17 +++++------- R/sysdata.rda |binary README.md | 20 +++++++++----- man/Meditate.Rd | 21 ++++++++++++++- man/PlotMandala.Rd |only man/ReadSessions.Rd | 4 +- man/figures |only 13 files changed, 123 insertions(+), 51 deletions(-)
Title: Estimation of the log Likelihood of the Saturated Model
Description: When the values of the outcome variable Y are either 0 or 1, the function lsm() calculates the estimation of the log likelihood in the saturated model. This model is characterized by Llinas (2006, ISSN:2389-8976) in section 2.3 through the assumptions 1 and 2. The function LogLik() works (almost perfectly) when the number of independent variables K is high, but for small K it calculates wrong values in some cases. For this reason, when Y is dichotomous and the data are grouped in J populations, it is recommended to use the function lsm() because it works very well for all K.
Author: Humberto Llinas [aut],
Omar Fabregas [aut],
Jorge Villalba [aut, cre]
Maintainer: Jorge Villalba <jlvia1191@gmail.com>
Diff between lsm versions 0.1.8 dated 2018-08-30 and 0.1.9 dated 2020-01-15
DESCRIPTION | 12 +- LICENSE | 10 - MD5 | 14 +- NAMESPACE | 55 ++++++++- R/lsm.R | 310 +++++++++++++++++++++++++++++++++++++++++++---------- README.md | 120 ++++++-------------- man/confint.lsm.Rd |only man/lsm.Rd | 149 ++++++++++++++++--------- man/summary.lsm.Rd |only 9 files changed, 455 insertions(+), 215 deletions(-)
Title: Local Interpretable (Model-Agnostic) Visual Explanations
Description: Interpretability of complex machine learning models is a growing concern.
This package helps to understand key factors that drive the
decision made by complicated predictive model (so called black box model).
This is achieved through local approximations that are either based on
additive regression like model or CART like model that allows for
higher interactions. The methodology is based on Tulio Ribeiro, Singh, Guestrin (2016) <doi:10.1145/2939672.2939778>.
More details can be found in Staniak, Biecek (2018) <doi:10.32614/RJ-2018-072>.
Author: Mateusz Staniak [cre, aut],
Przemysław Biecek [aut]
Maintainer: Mateusz Staniak <mateusz.staniak@math.uni.wroc.pl>
Diff between live versions 1.5.12 dated 2019-12-17 and 1.5.13 dated 2020-01-15
DESCRIPTION | 6 - MD5 | 20 +++--- NEWS.md | 4 + README.md | 90 +++++++++++++-------------- inst/doc/wine_quality.R | 14 +++- inst/doc/wine_quality.Rmd | 14 +++- inst/doc/wine_quality.html | 18 +++-- tests/testthat.R | 102 ++++++++++++++++-------------- tests/testthat/test_explaining.R | 129 +++++++++++++++++++-------------------- tests/testthat/test_shortcut.R | 15 ++-- vignettes/wine_quality.Rmd | 14 +++- 11 files changed, 232 insertions(+), 194 deletions(-)
Title: Distributed Storage and List
Description: An abstract DList class helps storing large list-type objects in a distributed manner. Corresponding high-level functions and methods for handling distributed storage (DStorage) and lists allows for processing such DLists on distributed systems efficiently. In doing so it uses a well defined storage backend implemented based on the DStorage class.
Author: Ingo Feinerer [aut],
Stefan Theussl [aut, cre],
Christian Buchta [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-project.org>
Diff between DSL versions 0.1-6.1 dated 2019-07-02 and 0.1-7 dated 2020-01-15
DESCRIPTION | 12 +++++------- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/HDFS.R | 2 +- R/utils.R | 2 +- build/vignette.rds |binary inst/doc/DSL.pdf |binary src/init.c | 4 +--- 8 files changed, 16 insertions(+), 20 deletions(-)
Title: Storage Management in 'Azure'
Description: Manage storage in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/services/storage>. On the admin side, 'AzureStor' includes features to create, modify and delete storage accounts. On the client side, it includes an interface to blob storage, file storage, and 'Azure Data Lake Storage Gen2': upload and download files and blobs; list containers and files/blobs; create containers; and so on. Authenticated access to storage is supported, via either a shared access key or a shared access signature (SAS). Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureStor versions 3.0.1 dated 2019-12-05 and 3.1.0 dated 2020-01-15
DESCRIPTION | 8 - MD5 | 55 +++++---- NAMESPACE | 8 + NEWS.md | 16 ++ R/adls_client_funcs.R | 24 +++- R/az_storage.R | 12 +- R/azcopy.R | 223 +++++++++++---------------------------- R/azcopy_auth.R |only R/azcopy_path.R |only R/blob_client_funcs.R | 23 +++- R/client_generics.R | 22 +++ R/file_client_funcs.R | 24 +++- R/storage_utils.R | 20 +-- R/transfer_generics.R | 50 ++++---- README.md | 1 inst/doc/intro.html | 1 inst/doc/intro.rmd | 1 man/adls.Rd | 14 ++ man/az_storage.Rd | 2 man/azcopy.Rd | 42 ++++++- man/blob.Rd | 14 ++ man/file.Rd | 14 ++ man/file_transfer.Rd | 26 ++-- man/generics.Rd | 12 ++ tests/testthat/test02_blob.R | 4 tests/testthat/test03_file.R | 4 tests/testthat/test04_adls.R | 4 tests/testthat/test05_generics.R | 12 ++ tests/testthat/test09_azcopy.R |only vignettes/intro.rmd | 1 30 files changed, 372 insertions(+), 265 deletions(-)
Title: Key and Secret Management in 'Azure'
Description: Manage keys, certificates, secrets, and storage accounts in Microsoft's 'Key Vault' service: <https://azure.microsoft.com/services/key-vault>. Provides facilities to store and retrieve secrets, use keys to encrypt, decrypt, sign and verify data, and manage certificates. Integrates with the 'AzureAuth' package to enable authentication with a certificate, and with the 'openssl' package for importing and exporting cryptographic objects. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureKeyVault versions 1.0.2 dated 2019-10-15 and 1.0.3 dated 2020-01-15
DESCRIPTION | 6 - MD5 | 25 ++-- NEWS.md | 4 R/AzureKeyVault.R | 2 R/add_methods.R | 188 +++++++++++++++++++++++++++++-- R/az_vault.R | 13 ++ inst/doc/intro.html | 216 ++++++++++++++++++------------------ man/AzureKeyVault.Rd | 2 man/az_key_vault.Rd | 2 man/create_key_vault.Rd | 19 +++ man/delete_key_vault.Rd | 21 ++- man/list_deleted_key_vaults.Rd |only man/purge_key_vault.Rd |only tests/testthat/test01_resource.R | 1 tests/testthat/test01a_softdelete.R |only 15 files changed, 359 insertions(+), 140 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-23 1.2.1
2018-01-10 1.2
2015-10-26 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-18 1.2
2012-10-12 1.1
2012-10-08 1.0-1
2012-10-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-10 2.5.2
2018-08-10 2.5.1
2015-05-04 2.5
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel, Khanh Nguyen (2009-2010), Terry Leitch (since 2016)
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.10 dated 2019-08-07 and 0.4.11 dated 2020-01-15
RQuantLib-0.4.10/RQuantLib/R/unitTest.R |only RQuantLib-0.4.10/RQuantLib/inst/unitTests |only RQuantLib-0.4.10/RQuantLib/tests/doRUnit.R |only RQuantLib-0.4.11/RQuantLib/ChangeLog | 40 ++++++++++++++++++++++++- RQuantLib-0.4.11/RQuantLib/DESCRIPTION | 10 +++--- RQuantLib-0.4.11/RQuantLib/MD5 | 36 ++++++++++------------ RQuantLib-0.4.11/RQuantLib/configure | 18 +++++------ RQuantLib-0.4.11/RQuantLib/configure.ac | 2 - RQuantLib-0.4.11/RQuantLib/data/tsQuotes.RData |binary RQuantLib-0.4.11/RQuantLib/data/vcube.RData |binary RQuantLib-0.4.11/RQuantLib/inst/NEWS.Rd | 10 ++++++ RQuantLib-0.4.11/RQuantLib/inst/tinytest |only RQuantLib-0.4.11/RQuantLib/src/calendars.cpp | 3 + RQuantLib-0.4.11/RQuantLib/src/utils.cpp | 22 ++++++++----- RQuantLib-0.4.11/RQuantLib/src/vanilla.cpp | 6 +-- RQuantLib-0.4.11/RQuantLib/tests/tinytest.R |only 16 files changed, 101 insertions(+), 46 deletions(-)
Title: Models for Non Linear Causality Detection in Time Series
Description: Models for non-linear time series analysis and causality detection. The main functionalities of this package consist of an implementation of the classical causality test (C.W.J.Granger 1980) <doi:10.1016/0165-1889(80)90069-X>, and a non-linear version of it based on feed-forward neural networks. This package contains also an implementation of the Transfer Entropy <doi:10.1103/PhysRevLett.85.461>, and the continuous Transfer Entropy using an approximation based on the k-nearest neighbors <doi:10.1103/PhysRevE.69.066138>. There are also some other useful tools, like the VARNN (Vector Auto-Regressive Neural Network) prediction model, the Augmented test of stationarity, and the discrete and continuous entropy and mutual information.
Author: Youssef Hmamouche [aut, cre],
Sylvain Barthelemy [cph]
Maintainer: Youssef Hmamouche <hmamoucheyussef@gmail.com>
Diff between NlinTS versions 1.3.7 dated 2019-01-22 and 1.3.8 dated 2020-01-15
DESCRIPTION | 14 ++-- MD5 | 28 ++++----- R/modues.R | 25 ++------ build/partial.rdb |binary inst/REFERENCES.bib | 6 - inst/include/Cmatrixoperations.h | 8 +- inst/include/Operateurs.h | 10 +-- inst/include/nsEntropy.h | 20 +++--- man/NlinTS-package.rd | 4 - man/nlin_causality.test.Rd | 5 - man/varmlp.Rd | 9 -- src/Cmatrixoperations.cpp | 119 +++++++++++++++++++-------------------- src/Struct.cpp | 94 +++++++++++++++--------------- src/Tests.cpp | 61 +++++++++---------- src/nsEntropy.cpp | 78 ++++++++----------------- 15 files changed, 223 insertions(+), 258 deletions(-)