Title: Get Swiss Federal and Cantonal Vote Results from Opendata.swiss
Description: Builds upon the real time data service as well as the archive for national votes <https://opendata.swiss/api/3/action/package_show?id=echtzeitdaten-am-abstimmungstag-zu-eidgenoessischen-abstimmungsvorlagen> and cantonal votes <https://opendata.swiss/api/3/action/package_show?id=echtzeitdaten-am-abstimmungstag-zu-kantonalen-abstimmungsvorlagen>. It brings the results of Swiss popular votes, aggregated at the geographical level of choice, into R. Additionally, it allows to retrieve data from the Swissvotes-Database, one of the most comprehensive data platforms on Swiss referendums and initiatives <https://swissvotes.ch/page/dataset/swissvotes_dataset.csv>.
Author: Thomas Lo Russo [cre, aut],
Thomas Willi [aut]
Maintainer: Thomas Lo Russo <th.lorusso@gmail.com>
Diff between swissdd versions 1.0.1 dated 2019-08-30 and 1.0.2 dated 2020-01-19
DESCRIPTION | 11 - MD5 | 24 +-- NAMESPACE | 2 R/get_results.R | 37 +++-- R/get_swissvotes.R |only R/json_to_dfr.R | 325 ++++++++++++++++++++++++--------------------- R/votedates.R | 2 R/zzz.R | 27 ++- man/available_votedates.Rd | 2 man/canton_json_to_dfr.Rd | 5 man/get_cantonalvotes.Rd | 11 + man/get_nationalvotes.Rd |only man/get_swissvotes.Rd | 26 +-- man/swiss_json_to_dfr.Rd | 2 14 files changed, 269 insertions(+), 205 deletions(-)
Title: Reliability Coefficients
Description: Derives point estimates with confidence intervals for Bennett et als S, Cohen's kappa, Conger's kappa, Fleiss' kappa, Gwet's AC, intraclass correlation coefficients, Krippendorff's alpha, Scott's pi, the standard error of measurement, and weighted kappa.
Author: Riccardo LoMartire
Maintainer: Riccardo LoMartire <lomartire@kth.se>
Diff between rel versions 1.3.1 dated 2017-05-12 and 1.4.0 dated 2020-01-19
rel-1.3.1/rel/R/plot.rel.R |only rel-1.3.1/rel/R/print.rel.R |only rel-1.3.1/rel/R/summary.rel.R |only rel-1.3.1/rel/man/plot.rel.Rd |only rel-1.3.1/rel/man/print.rel.Rd |only rel-1.3.1/rel/man/summary.rel.Rd |only rel-1.4.0/rel/DESCRIPTION | 10 +- rel-1.4.0/rel/MD5 | 43 ++++----- rel-1.4.0/rel/NEWS | 10 ++ rel-1.4.0/rel/R/bags.R | 50 ++++------- rel-1.4.0/rel/R/ckap.R | 145 ++++++++++++++------------------- rel-1.4.0/rel/R/ctab-internal.R |only rel-1.4.0/rel/R/gac.R | 88 +++++++------------- rel-1.4.0/rel/R/icc.R | 42 ++++----- rel-1.4.0/rel/R/kra.R | 109 ++++++++---------------- rel-1.4.0/rel/R/plot.rel-internal.R |only rel-1.4.0/rel/R/print.rel-internal.R |only rel-1.4.0/rel/R/rel-internal.R | 127 ---------------------------- rel-1.4.0/rel/R/sem.R | 46 +++++----- rel-1.4.0/rel/R/spi.R | 61 +++++-------- rel-1.4.0/rel/R/summary.rel-internal.R |only rel-1.4.0/rel/R/wgts-internal.R |only rel-1.4.0/rel/man/bags.Rd | 1 rel-1.4.0/rel/man/ckap.Rd | 1 rel-1.4.0/rel/man/gac.Rd | 1 rel-1.4.0/rel/man/kra.Rd | 9 +- rel-1.4.0/rel/man/rel-package.Rd | 6 - rel-1.4.0/rel/man/spi.Rd | 1 28 files changed, 270 insertions(+), 480 deletions(-)
Title: Access to Current and Historical Basketball Data
Description: Provides simple functions for accessing data/tables on
<http://www.basketball-reference.com>.
Author: Ryan Elmore [cre, aut],
Peter DeWitt [ctb]
Maintainer: Ryan Elmore <rtelmore@gmail.com>
Diff between ballr versions 0.2.5 dated 2020-01-10 and 0.2.6 dated 2020-01-19
DESCRIPTION | 6 +- MD5 | 10 ++-- inst/doc/use-ballr.R | 34 ++++++-------- inst/doc/use-ballr.Rmd | 39 +++++++--------- inst/doc/use-ballr.html | 115 +++++++++++++++++++++++++----------------------- vignettes/use-ballr.Rmd | 39 +++++++--------- 6 files changed, 118 insertions(+), 125 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.4.3 dated 2019-10-27 and 1.4.5 dated 2020-01-19
DESCRIPTION | 16 - LICENSE | 2 MD5 | 82 +++--- NAMESPACE | 1 NEWS.md | 13 - R/KFME_grid.R | 13 - R/RCzechia.R | 4 R/chr_uzemi.R | 3 R/downloader.R | 30 +- R/geocode.R | 34 +- R/kraje.R | 12 R/lesy.R | 3 R/obce_body.R | 1 R/obce_polygony.R | 6 R/okresy.R | 7 R/orp_polygony.R | 1 R/plochy.R | 1 R/reky.R | 1 R/republika.R | 8 R/revgeo.R | 24 + R/silnice.R | 1 R/union_sf.R | 41 +-- R/vyskopis.R | 8 R/zeleznice.R | 3 build/vignette.rds |binary inst/doc/vignette.R | 13 - inst/doc/vignette.Rmd | 5 inst/doc/vignette.html | 54 ++-- man/KFME_grid.Rd | 5 man/RCzechia-package.Rd | 4 man/geocode.Rd | 1 man/kraje.Rd | 1 man/obce_polygony.Rd | 3 man/okresy.Rd | 1 man/republika.Rd | 1 man/revgeo.Rd | 5 man/union_sf.Rd | 11 man/vyskopis.Rd | 1 man/zeleznice.Rd | 2 tests/testthat/test-1-data-structures.R | 415 ++++++++++++++++++-------------- tests/testthat/test-2-code.R | 39 ++- vignettes/vignette.Rmd | 5 42 files changed, 453 insertions(+), 428 deletions(-)
Title: Wizardry Code Offensive Programming
Description: Allows to change R coding from defensive programming (i.e. many input
parameter checks implementation required) to offensive
programming (none/reduced number of parameter checks required). Provides code
instrumentation to ease this change. Should reduce
the code size as many controls and type checks have no more reason to exist.
Should also speed up processing as many checks will be reduced to single check.
Author: Fabien Gelineau <neonira@gmail.com>
Maintainer: Fabien Gelineau <neonira@gmail.com>
Diff between wyz.code.offensiveProgramming versions 1.1.15 dated 2020-01-15 and 1.1.16 dated 2020-01-19
DESCRIPTION | 6 +++--- MD5 | 25 ++++++++++++++++--------- NAMESPACE | 2 ++ R/FunctionParameterTypeFactory.R | 3 ++- R/matchFunctionSignature.R |only R/packageFunctionsInformation.R | 4 +++- R/retrieveFunctionArgumentNames.R |only R/retrieveFunctionArguments.R | 8 -------- R/verifyFunctionArguments.R |only build/partial.rdb |binary inst/doc/release.Rmd | 6 ++++++ inst/doc/release.html | 24 ++++++++++++++++-------- man/matchFunctionSignature.Rd |only man/verifyFunctionArguments.Rd |only tests/testthat/test_matchFunctionSignature.R |only tests/testthat/test_verifyFunctionArguments.R |only vignettes/release.Rmd | 6 ++++++ 17 files changed, 54 insertions(+), 30 deletions(-)
More information about wyz.code.offensiveProgramming at CRAN
Permanent link
Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides:
'%.>%' dot-pipe (an 'S3' configurable pipe),
'let()'
(converts non-standard evaluation interfaces to parametric standard
evaluation interfaces, inspired by 'gtools:strmacro()' and 'base::bquote()'),
'build_frame()'/'draw_frame()' ('data.frame' example tools),
'qc()' (quoting concatenate),
':=' (named map builder),
and more.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 1.9.4 dated 2020-01-17 and 1.9.5 dated 2020-01-19
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 4 ++++ R/stop_if_dot_args.R | 2 +- inst/doc/CornerCases.html | 4 ++-- inst/doc/DebugFnW.html | 6 +++--- inst/doc/FrameTools.html | 4 ++-- inst/doc/Function_Objects.html | 4 ++-- inst/doc/Named_Arguments.html | 4 ++-- inst/doc/QuotingConcatinate.html | 4 ++-- inst/doc/SubstitutionModes.html | 4 ++-- inst/doc/bquote.html | 6 +++--- inst/doc/dot_pipe.html | 4 ++-- inst/doc/lambda.html | 4 ++-- inst/doc/let.html | 4 ++-- inst/doc/named_map_builder.html | 4 ++-- inst/doc/wrapr_applicable.html | 4 ++-- 17 files changed, 53 insertions(+), 49 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018) <doi:10.1111/2041-210X.13029>. Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer [aut, cre],
Dean Adams [aut]
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 0.5.0 dated 2019-12-19 and 0.5.1 dated 2020-01-19
DESCRIPTION | 7 ++++--- MD5 | 22 +++++++++++----------- NEWS.md | 12 +++++++++--- R/RRPP.support.code.r | 5 ++++- R/manova.update.r | 2 +- R/predict.lm.rrpp.r | 2 +- R/prep.lda.r | 2 +- inst/doc/ANOVA.vs.MANOVA.html | 4 ++-- inst/doc/Using.RRPP.html | 4 ++-- man/manova.update.Rd | 2 +- man/predict.lm.rrpp.Rd | 2 +- man/prep.lda.Rd | 2 +- 12 files changed, 38 insertions(+), 28 deletions(-)
Title: Implementation of Random Variables
Description: Implements random variables by means of S4 classes and methods.
Author: Matthias Kohl [cre, cph, aut],
Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RandVar versions 1.2.0 dated 2019-04-03 and 1.2.1 dated 2020-01-19
DESCRIPTION | 20 MD5 | 16 build/vignette.rds |binary inst/doc/RandVar.Rnw | 2 inst/doc/RandVar.pdf |binary man/0RandVar-package.Rd | 91 - tests/tests.R | 484 ++--- tests/tests.Rout.save | 4144 +++++++++++++++++++++++++----------------------- vignettes/RandVar.Rnw | 2 9 files changed, 2501 insertions(+), 2258 deletions(-)
Title: Extra Additive Terms for Generalized Additive Models for
Location Scale and Shape
Description: Interface for extra smooth functions including tensor products, neural networks and decision trees.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob Rigby, Vlasios Voudouris, Daniil Kiose
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.add versions 5.0-1 dated 2016-10-19 and 5.1-5 dated 2020-01-19
gamlss.add-5.0-1/gamlss.add/R/blag-3-1-12.R |only gamlss.add-5.0-1/gamlss.add/R/la-gamlss-3-1-12.R |only gamlss.add-5.0-1/gamlss.add/R/penLags-18-6-13.R |only gamlss.add-5.0-1/gamlss.add/man/blag.Rd |only gamlss.add-5.0-1/gamlss.add/man/la.Rd |only gamlss.add-5.0-1/gamlss.add/man/penLags.Rd |only gamlss.add-5.1-5/gamlss.add/DESCRIPTION | 15 +-- gamlss.add-5.1-5/gamlss.add/MD5 | 30 +++--- gamlss.add-5.1-5/gamlss.add/NAMESPACE | 35 ++++--- gamlss.add-5.1-5/gamlss.add/R/CentilesTwo.R |only gamlss.add-5.1-5/gamlss.add/R/ba.R | 82 ++++++++++++------ gamlss.add-5.1-5/gamlss.add/R/fk-gamlss.R | 1 gamlss.add-5.1-5/gamlss.add/R/ga_new.R | 41 ++++++--- gamlss.add-5.1-5/gamlss.add/R/nnet_gamlss.R | 2 gamlss.add-5.1-5/gamlss.add/R/tree_gamlss.R | 4 gamlss.add-5.1-5/gamlss.add/build |only gamlss.add-5.1-5/gamlss.add/man/centilesTwo.Rd |only gamlss.add-5.1-5/gamlss.add/man/ga.Rd | 60 +++++++------ gamlss.add-5.1-5/gamlss.add/man/gamlss.add-package.Rd |only gamlss.add-5.1-5/gamlss.add/man/gamlss.ga.Rd | 1 gamlss.add-5.1-5/gamlss.add/man/gamlss.nn.Rd | 2 21 files changed, 167 insertions(+), 106 deletions(-)
Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by
the help of model performance, variable importance, ICE profiles,
partial dependence (Friedman J. H. (2001)
<doi:10.1214/aos/1013203451>), accumulated local effects (Apley D. W.
(2016) <arXiv:1612.08468>), further effects plots, scatter plots,
interaction strength, and variable contribution breakdown (approximate
SHAP) for single observations (Gosiewska and Biecek (2019)
<arxiv:1903.11420>). All tools are implemented to work with case
weights and allow for stratified analysis. Furthermore, multiple
flashlights can be combined and analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between flashlight versions 0.5.0 dated 2019-12-05 and 0.6.0 dated 2020-01-19
flashlight-0.5.0/flashlight/R/zap_small.R |only flashlight-0.5.0/flashlight/man/zap_small.Rd |only flashlight-0.6.0/flashlight/DESCRIPTION | 26 flashlight-0.6.0/flashlight/MD5 | 81 - flashlight-0.6.0/flashlight/NAMESPACE | 16 flashlight-0.6.0/flashlight/NEWS.md | 26 flashlight-0.6.0/flashlight/R/add_shap.R |only flashlight-0.6.0/flashlight/R/ale_profile.R | 2 flashlight-0.6.0/flashlight/R/common_breaks.R |only flashlight-0.6.0/flashlight/R/flashlight.R | 13 flashlight-0.6.0/flashlight/R/is_flashlight.R | 17 flashlight-0.6.0/flashlight/R/light_breakdown.R | 27 flashlight-0.6.0/flashlight/R/light_check.R | 9 flashlight-0.6.0/flashlight/R/light_effects.R | 72 - flashlight-0.6.0/flashlight/R/light_importance.R | 176 +- flashlight-0.6.0/flashlight/R/light_interaction.R | 28 flashlight-0.6.0/flashlight/R/light_profile.R | 105 - flashlight-0.6.0/flashlight/R/light_scatter.R |only flashlight-0.6.0/flashlight/R/plot_light_effects.R | 10 flashlight-0.6.0/flashlight/R/plot_light_importance.R | 12 flashlight-0.6.0/flashlight/R/plot_light_profile.R | 2 flashlight-0.6.0/flashlight/R/plot_light_scatter.R |only flashlight-0.6.0/flashlight/R/predict_flashlight.R | 8 flashlight-0.6.0/flashlight/R/print_flashlight.R | 21 flashlight-0.6.0/flashlight/R/print_light.R | 8 flashlight-0.6.0/flashlight/R/residuals_flashlight.R | 2 flashlight-0.6.0/flashlight/R/response.R | 2 flashlight-0.6.0/flashlight/README.md | 7 flashlight-0.6.0/flashlight/inst/doc/flashlight.R | 110 - flashlight-0.6.0/flashlight/inst/doc/flashlight.Rmd | 301 ++-- flashlight-0.6.0/flashlight/inst/doc/flashlight.html | 998 +++++++-------- flashlight-0.6.0/flashlight/man/add_shap.Rd |only flashlight-0.6.0/flashlight/man/common_breaks.Rd |only flashlight-0.6.0/flashlight/man/flashlight.Rd | 7 flashlight-0.6.0/flashlight/man/is.flashlight.Rd | 15 flashlight-0.6.0/flashlight/man/light_breakdown.Rd | 2 flashlight-0.6.0/flashlight/man/light_check.Rd | 10 flashlight-0.6.0/flashlight/man/light_effects.Rd | 4 flashlight-0.6.0/flashlight/man/light_importance.Rd | 43 flashlight-0.6.0/flashlight/man/light_interaction.Rd | 7 flashlight-0.6.0/flashlight/man/light_profile.Rd | 13 flashlight-0.6.0/flashlight/man/light_scatter.Rd |only flashlight-0.6.0/flashlight/man/plot.light_effects.Rd | 5 flashlight-0.6.0/flashlight/man/plot.light_importance.Rd | 2 flashlight-0.6.0/flashlight/man/plot.light_scatter.Rd |only flashlight-0.6.0/flashlight/vignettes/biblio.bib |only flashlight-0.6.0/flashlight/vignettes/flashlight.Rmd | 301 ++-- 47 files changed, 1400 insertions(+), 1088 deletions(-)
Title: Hierarchical Modelling of Faecal Egg Counts
Description: An implementation of Bayesian hierarchical models
for faecal egg count data to assess anthelmintic
efficacy. Bayesian inference is done via MCMC sampling using 'Stan' <https://mc-stan.org/>.
Author: Craig Wang [aut, cre] (<https://orcid.org/0000-0003-1804-2463>),
Michaela Paul [aut],
Tea Isler [ctb],
Reinhard Furrer [ctb] (<https://orcid.org/0000-0002-6319-2332>),
Trustees of Columbia University [cph] (src/init.cpp, tools/make_cc.R,
R/stanmodels.R)
Maintainer: Craig Wang <craig.wang@math.uzh.ch>
Diff between eggCounts versions 2.2-1 dated 2019-09-26 and 2.3 dated 2020-01-19
DESCRIPTION | 14 +++++++------- MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/fec_stan.R | 9 ++++----- R/fecr_stan.R | 16 +++++++--------- inst/doc/eggCounts_vignettes.pdf |binary man/eggCounts-package.Rd | 6 +++--- src/stan_files/indefficacy.stan | 4 ++-- src/stan_files/nb.stan | 2 +- src/stan_files/paired.stan | 4 ++-- src/stan_files/simple.stan | 4 ++-- src/stan_files/unpaired.stan | 4 ++-- src/stan_files/zinb.stan | 2 +- src/stan_files/zipaired.stan | 4 ++-- src/stan_files/ziunpaired.stan | 4 ++-- tests/testthat/test.R | 4 ++-- 17 files changed, 59 insertions(+), 56 deletions(-)
Title: Object Oriented Implementation of Probability Models
Description: Implements S4 classes for probability models based on packages 'distr' and
'distrEx'.
Author: Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrMod versions 2.8.2 dated 2019-05-02 and 2.8.3 dated 2020-01-19
DESCRIPTION | 16 +++++----- MD5 | 18 +++++------ build/vignette.rds |binary inst/MASKING | 30 ++++++++----------- inst/NEWS | 7 ++++ inst/doc/distrMod.R | 1 inst/doc/distrMod.pdf |binary man/0distrMod-package.Rd | 6 +-- man/isKerAinKerB.Rd | 3 + tests/Examples/distrMod-Ex.Rout.save | 55 +++++++++++++++++------------------ 10 files changed, 72 insertions(+), 64 deletions(-)
Title: Bayesian Regression Models using 'Stan'
Description: Fit Bayesian generalized (non-)linear multivariate multilevel models
using 'Stan' for full Bayesian inference. A wide range of distributions
and link functions are supported, allowing users to fit -- among others --
linear, robust linear, count data, survival, response times, ordinal,
zero-inflated, hurdle, and even self-defined mixture models all in a
multilevel context. Further modeling options include non-linear and
smooth terms, auto-correlation structures, censored data, meta-analytic
standard errors, and quite a few more. In addition, all parameters of the
response distribution can be predicted in order to perform distributional
regression. Prior specifications are flexible and explicitly encourage
users to apply prior distributions that actually reflect their beliefs.
Model fit can easily be assessed and compared with posterior predictive
checks and leave-one-out cross-validation. References: Bürkner (2017)
<doi:10.18637/jss.v080.i01>; Bürkner (2018) <doi:10.32614/RJ-2018-017>;
Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>.
Author: Paul-Christian Bürkner [aut, cre]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>
Diff between brms versions 2.11.0 dated 2020-01-12 and 2.11.1 dated 2020-01-19
brms-2.11.0/brms/R/formula-helpers.R |only brms-2.11.0/brms/R/syntax-helpers-ad.R |only brms-2.11.0/brms/R/syntax-helpers-gp.R |only brms-2.11.0/brms/R/syntax-helpers-re.R |only brms-2.11.0/brms/R/syntax-helpers-sm.R |only brms-2.11.0/brms/R/syntax-helpers-sp.R |only brms-2.11.1/brms/DESCRIPTION | 10 brms-2.11.1/brms/MD5 | 104 +- brms-2.11.1/brms/NAMESPACE | 2 brms-2.11.1/brms/NEWS.md | 13 brms-2.11.1/brms/R/brmsformula.R | 79 ++ brms-2.11.1/brms/R/data-helpers.R | 4 brms-2.11.1/brms/R/formula-ad.R |only brms-2.11.1/brms/R/formula-cs.R |only brms-2.11.1/brms/R/formula-gp.R |only brms-2.11.1/brms/R/formula-re.R |only brms-2.11.1/brms/R/formula-sm.R |only brms-2.11.1/brms/R/formula-sp.R |only brms-2.11.1/brms/R/kfold.R | 678 ++++++++--------- brms-2.11.1/brms/R/restructure.R | 9 brms-2.11.1/brms/R/summary.R | 6 brms-2.11.1/brms/inst/doc/brms_customfamilies.html | 66 - brms-2.11.1/brms/inst/doc/brms_distreg.html | 102 +- brms-2.11.1/brms/inst/doc/brms_families.html | 4 brms-2.11.1/brms/inst/doc/brms_missings.html | 54 - brms-2.11.1/brms/inst/doc/brms_monotonic.html | 150 +-- brms-2.11.1/brms/inst/doc/brms_multilevel.pdf |binary brms-2.11.1/brms/inst/doc/brms_multivariate.html | 190 ++-- brms-2.11.1/brms/inst/doc/brms_nonlinear.Rmd | 650 ++++++++-------- brms-2.11.1/brms/inst/doc/brms_nonlinear.html | 125 +-- brms-2.11.1/brms/inst/doc/brms_overview.pdf |binary brms-2.11.1/brms/inst/doc/brms_phylogenetics.html | 124 +-- brms-2.11.1/brms/man/addition-terms.Rd | 2 brms-2.11.1/brms/man/autocor.brmsfit.Rd | 52 - brms-2.11.1/brms/man/brm.Rd | 816 ++++++++++----------- brms-2.11.1/brms/man/brm_multiple.Rd | 342 ++++---- brms-2.11.1/brms/man/brmsfit-class.Rd | 130 +-- brms-2.11.1/brms/man/cor_ar.Rd | 102 +- brms-2.11.1/brms/man/cor_arma.Rd | 104 +- brms-2.11.1/brms/man/cor_brms.Rd | 58 - brms-2.11.1/brms/man/cor_car.Rd | 146 +-- brms-2.11.1/brms/man/cor_cosy.Rd | 64 - brms-2.11.1/brms/man/cor_fixed.Rd | 58 - brms-2.11.1/brms/man/cor_ma.Rd | 92 +- brms-2.11.1/brms/man/cor_sar.Rd | 118 +-- brms-2.11.1/brms/man/cs.Rd | 2 brms-2.11.1/brms/man/extract_draws.Rd | 218 ++--- brms-2.11.1/brms/man/gp.Rd | 280 +++---- brms-2.11.1/brms/man/gr.Rd | 2 brms-2.11.1/brms/man/make_standata.Rd | 220 ++--- brms-2.11.1/brms/man/me.Rd | 2 brms-2.11.1/brms/man/mi.Rd | 2 brms-2.11.1/brms/man/mm.Rd | 2 brms-2.11.1/brms/man/mmc.Rd | 2 brms-2.11.1/brms/man/mo.Rd | 2 brms-2.11.1/brms/man/s.Rd | 2 brms-2.11.1/brms/man/standata.brmsfit.Rd | 110 +- brms-2.11.1/brms/tests/testthat/tests.brmsterms.R | 176 ++-- brms-2.11.1/brms/vignettes/brms_nonlinear.Rmd | 650 ++++++++-------- 59 files changed, 3112 insertions(+), 3012 deletions(-)
Title: Statistical Tools for Filebacked Big Matrices
Description: Easy-to-use, efficient, flexible and scalable statistical tools.
Package bigstatsr provides and uses Filebacked Big Matrices via memory-mapping.
It provides for instance matrix operations, Principal Component Analysis,
sparse linear supervised models, utility functions and more
<doi:10.1093/bioinformatics/bty185>.
Author: Florian Privé [aut, cre],
Michael Blum [ths],
Hugues Aschard [ths]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigstatsr versions 1.0.1 dated 2019-12-20 and 1.1.2 dated 2020-01-19
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Title: FROC Analysis by Bayesian Approaches
Description: Execute BayesianFROC::fit_GUI_Shiny() (or fit_GUI_Shiny_MRMC()) for a graphical user interface via Shiny. The free-response receiver operating characteristic (FROC) method developed by Chakraborty is a generalization of receiver operating characteristic analysis, but Chakraborty used a non-Bayesian approach. This package aims to reconstruct Chakraborty's technique using a Bayesian approach and to verify that our models fit practical datasets. We also develop hierarchical Bayesian models for comparing modalities with new methods. The ultimate aim of FROC analysis is to compare observer performances, which means comparing characteristics, such as area under the curve (AUC) or figure of merit (FOM). In this package, we only use the notion of AUC for modality comparison, where by "modality", we mean imaging methods such as Magnetic Resonance Imaging (MRI), Computed Tomography (CT), Positron Emission Tomography (PET), ..., etc. So there is a problem that which imaging method is better to detect lesions from shadows in radiographs. To solve modality comparison issues, this package provides new methods using hierarchical Bayesian models proposed by the author of this package. Using this package, one can obtain at least one conclusion that which imaging methods are better for finding lesions in radiographs with the case of your data. Fitting FROC statistical models is sometimes not so good, it can easily confirm by drawing FROC curves and comparing these curves and the points constructed by False Positive fractions (FPFs) and True Positive Fractions (TPFs), we can validate the goodness of fit intuitively. Such validation is also implemented by the Chi square goodness of fit statistics in the Bayesian context which means that the parameter is not deterministic, thus by integrating it with the posterior predictive measure, we get a desired value. To compare modalities (imaging methods: MRI, CT, PET, ... , etc), we evaluate AUCs for each modality. FROC is developed by Dev Chakraborty, his FROC model in his 1989 paper relies on the maximal likelihood methodology. The author modified and provided the alternative Bayesian FROC model. Strictly speaking, his model does not coincide with models in this package. In FROC context, we means by multiple reader and multiple case (MRMC) the case of the number of reader or modality is two or more. The MRMC data is available for functions of this package. I hope that medical researchers use not only the frequentist method but also alternative Bayesian methods. In medical research, many problems are considered under only frequentist methods, such as the notion of p-values. But p-value is sometimes misunderstood. Bayesian methods provide very simple, direct, intuitive answer for research questions. Combining frequentist methods with Bayesian methods, we can obtain more reliable answer for research questions. Please execute the following R scripts from the R (R studio) console, demo(demo_MRMC, package = "BayesianFROC"); demo(demo_srsc, package = "BayesianFROC"); demo(demo_stan, package = "BayesianFROC"); demo(demo_drawcurves_srsc, package = "BayesianFROC"); demo_Bayesian_FROC(); demo_Bayesian_FROC_without_pause(). References: Dev Chakraborty (1989) <doi:10.1118/1.596358> Maximum likelihood analysis of free - response receiver operating characteristic (FROC) data. Pre-print: Issei Tsunoda; Bayesian Models for free-response receiver operating characteristic analysis. See the vignettes for more details.
Author: Issei Tsunoda [aut, cre]
Maintainer: Issei Tsunoda <tsunoda.issei1111@gmail.com>
Diff between BayesianFROC versions 0.2.0 dated 2019-10-25 and 0.2.1 dated 2020-01-19
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16 BayesianFROC-0.2.1/BayesianFROC/man/ppp_MRMC.Rd | 10 BayesianFROC-0.2.1/BayesianFROC/man/ppp_srsc.Rd | 45 BayesianFROC-0.2.1/BayesianFROC/man/replicate_MRMC_dataList.Rd | 70 BayesianFROC-0.2.1/BayesianFROC/man/replicate_model_MRMC.Rd | 91 BayesianFROC-0.2.1/BayesianFROC/man/sortAUC.Rd | 8 BayesianFROC-0.2.1/BayesianFROC/man/stanfitExtended.Rd | 11 BayesianFROC-0.2.1/BayesianFROC/man/summarize_MRMC.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/man/summary_AUC_comparison_MRMC.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/man/summary_AUC_comparison_MRMC_with_crayon.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/man/summary_AUC_comparison_MRMC_without_crayon.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/man/summary_EAP_CI_srsc.Rd | 8 BayesianFROC-0.2.1/BayesianFROC/man/the_row_number_of_logical_vector.Rd | 5 BayesianFROC-0.2.1/BayesianFROC/man/v.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/man/v_truth.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/man/validation.dataset_srsc.Rd | 73 BayesianFROC-0.2.1/BayesianFROC/man/validation.draw_srsc.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/man/z.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/man/z_truth.Rd | 2 BayesianFROC-0.2.1/BayesianFROC/vignettes/Very_Very_Very_Brief_Description_MRMC.Rmd |only 191 files changed, 7213 insertions(+), 7431 deletions(-)
Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with audio
and video in R. Generate high quality videos files by capturing images from the R graphics
device combined with custom audio stream. Also offers tools to convert between countless
audio / video formats, or convert images to video and vice versa. This package interfaces
directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between av versions 0.3 dated 2019-08-21 and 0.4.0 dated 2020-01-19
DESCRIPTION | 17 +++++++------ MD5 | 39 ++++++++++++++++++-------------- NAMESPACE | 24 +++++++++++++++++++ NEWS | 11 +++++++++ R/capture.R | 20 +++++++++++++++- R/encode.R | 22 ++++++++++++++++-- R/fft.R |only R/winfunc.R |only configure | 19 +++++++++++++-- man/av_video_images.Rd | 3 -- man/capturing.Rd | 38 ++++++++++++++++++++++++------- man/demo.Rd | 19 +++++++++++---- man/encoding.Rd | 43 ++++++++++++++++++++++++++++++----- man/formats.Rd | 9 ++++--- man/info.Rd | 9 ++++--- man/logging.Rd | 9 ++++--- man/read_audio.Rd |only man/winfunc.Rd |only src/Makevars.win | 12 +++++---- src/fft.c |only src/init.c | 8 ++++-- src/video.c | 56 +++++++++++++++++++++++++++++++++++----------- src/winfunc.c |only tests/testthat/test-fft.R |only 24 files changed, 278 insertions(+), 80 deletions(-)
Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library
'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Alessandro Gasparini [ctb] (<https://orcid.org/0000-0002-8319-7624>),
Benjie Gillam [ctb],
Claus Thorn Ekstrøm [ctb],
Daniel Anderson [ctb],
Dawei Lang [ctb],
Emi Tanaka [ctb],
Garrick Aden-Buie [ctb],
Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>),
John Little [ctb],
Joseph Casillas [ctb],
Lucy D'Agostino McGowan [ctb] (<https://orcid.org/0000-0001-7297-9359>),
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Michael Wayne Kearney [ctb],
Nan-Hung Hsieh [ctb],
Ole Petter Bang [ctb] (CSS in
rmarkdown/templates/xaringan/resources/default.css),
Patrick Schratz [ctb],
Paul Klemm [ctb] (<https://orcid.org/0000-0002-5985-1737>),
Paul Lemmens [ctb],
Sean Lopp [ctb],
Yongfu Liao [ctb],
Yue Jiang [ctb] (<https://orcid.org/0000-0002-9798-5517>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xaringan versions 0.13 dated 2019-10-30 and 0.14 dated 2020-01-19
DESCRIPTION | 34 +++++---- MD5 | 37 +++++----- R/render.R | 7 + README.md | 4 - build/vignette.rds |binary inst/doc/intro-en_US.Rhtml | 6 - inst/doc/intro-en_US.html | 6 - inst/doc/intro-zh_CN.Rhtml | 6 - inst/doc/intro-zh_CN.html | 6 - inst/examples/ki-demo.Rmd |only inst/examples/uol-demo.Rmd | 2 inst/rmarkdown/templates/xaringan/resources/default.html | 2 inst/rmarkdown/templates/xaringan/resources/ki-fonts.css |only inst/rmarkdown/templates/xaringan/resources/ki.css |only inst/rmarkdown/templates/xaringan/skeleton/skeleton.Rmd | 8 +- inst/rmarkdown/templates/xaringan_zh-CN/skeleton/skeleton.Rmd | 4 - man/decktape.Rd | 11 ++ man/inf_mr.Rd | 6 + man/moon_reader.Rd | 11 ++ vignettes/intro-en_US.Rhtml | 6 - vignettes/intro-zh_CN.Rhtml | 6 - 21 files changed, 91 insertions(+), 71 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jakub Nowosad [ctb],
Jannes Muenchow [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 2.3-1 dated 2019-09-17 and 2.3-2 dated 2020-01-19
DESCRIPTION | 10 +-- MD5 | 118 ++++++++++++++++++------------------- NEWS | 6 + R/grob_mod.R | 10 ++- R/meta_plot_items.R | 20 +++--- R/pkg.R | 2 R/preprocess_gt.R | 62 ++++++------------- R/preprocess_shapes.R | 11 ++- R/print_tmap.R | 18 +++++ R/process_facet_layout.R | 2 R/process_meta.R | 2 R/process_text.R | 6 - R/qtm.R | 5 - R/tm_layers.R | 5 - R/tm_layout.R | 20 +++--- R/tm_misc_elements.R | 4 - R/tm_shape.R | 4 - R/tmap_options.R | 12 ++- R/tmap_save.R | 7 +- R/tmap_style_catalogue.R | 2 R/view_tmap.R | 32 +++++----- build/vignette.rds |binary inst/doc/tmap-JSS-code.R | 38 ++++++------ inst/doc/tmap-JSS-code.html | 3 inst/doc/tmap-changes-v2.R | 12 +-- inst/doc/tmap-changes-v2.html | 3 inst/doc/tmap-getstarted.R | 32 +++++----- inst/doc/tmap-getstarted.Rmd | 2 inst/doc/tmap-getstarted.html | 4 - man/Shapes.Rd | 2 man/axis_labels.Rd | 2 man/print.tmap.Rd | 13 +++- man/qtm.Rd | 33 ++++++++-- man/theme_ps.Rd | 8 +- man/tm_add_legend.Rd | 26 ++++++-- man/tm_compass.Rd | 19 ++++-- man/tm_credits.Rd | 18 ++++- man/tm_facets.Rd | 31 ++++++--- man/tm_grid.Rd | 52 ++++++++++++---- man/tm_iso.Rd | 19 +++--- man/tm_layout.Rd | 112 +++++++++++++++++++++++++++-------- man/tm_lines.Rd | 57 +++++++++++++----- man/tm_logo.Rd | 10 ++- man/tm_minimap.Rd | 3 man/tm_polygons.Rd | 68 +++++++++++++++------ man/tm_raster.Rd | 69 +++++++++++++++++---- man/tm_scale_bar.Rd | 15 +++- man/tm_sf.Rd | 18 ++++- man/tm_shape.Rd | 26 +++++--- man/tm_symbols.Rd | 133 +++++++++++++++++++++++++++++++----------- man/tm_text.Rd | 79 ++++++++++++++++++------ man/tm_tiles.Rd | 2 man/tm_view.Rd | 22 +++++- man/tmap_animation.Rd | 13 +++- man/tmap_arrange.Rd | 20 ++++-- man/tmap_icons.Rd | 11 ++- man/tmap_leaflet.Rd | 10 ++- man/tmap_options.Rd | 20 +++++- man/tmap_save.Rd | 20 +++++- vignettes/tmap-getstarted.Rmd | 2 60 files changed, 943 insertions(+), 442 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible table modeling step, plus explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 1.4.1 dated 2020-01-08 and 1.4.2 dated 2020-01-19
DESCRIPTION | 12 ++++++------ MD5 | 28 ++++++++++++++-------------- NEWS.md | 5 +++++ R/db_ops.R | 10 +++++----- R/materialize.R | 4 +--- README.md | 36 +++++++++++++++++++++++++++++++++--- inst/doc/AssigmentPartitioner.html | 4 ++-- inst/doc/Parameterized_rquery.html | 4 ++-- inst/doc/PipeableSQL.html | 4 ++-- inst/doc/QueryGeneration.html | 4 ++-- inst/doc/R_mapping.html | 4 ++-- inst/doc/rquery_intro.html | 4 ++-- inst/doc/rquery_many_columns.html | 4 ++-- inst/doc/rquery_substitution.html | 4 ++-- inst/doc/sql_quoting.html | 4 ++-- 15 files changed, 82 insertions(+), 49 deletions(-)
Title: R Interface to the Pushbullet Messaging Service
Description: An R interface to the Pushbullet messaging service which
provides fast and efficient notifications (and file transfer) between
computers, phones and tablets. An account has to be registered at the
site <http://www.pushbullet.com> site to obtain a (free) API key.
Author: Dirk Eddelbuettel with contributions by Bill Evans, Mike Birdgeneau,
Henrik Bengtsson, Seth Wenchel, Colin Gillespie and Chan-Yub Park
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RPushbullet versions 0.3.2 dated 2019-07-21 and 0.3.3 dated 2020-01-19
ChangeLog | 23 ++++++++++++++++++++++- DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/init.R | 6 +++++- R/pushes.R | 11 ++++++++++- README.md | 2 +- inst/NEWS.Rd | 10 +++++++++- man/pbGetPosts.Rd | 2 +- man/pbPost.Rd | 5 +++++ tests/simpleTests.R | 3 +-- 10 files changed, 68 insertions(+), 22 deletions(-)
Title: Moments of Folded and Doubly Truncated Multivariate
Distributions
Description: It computes arbitrary products moments (mean vector and variance-covariance matrix), for some double truncated (and folded) multivariate distributions. These distributions belong to the family of selection elliptical distributions, which includes well known skewed distributions as the unified skew-t distribution (SUT) and its particular cases as the extended skew-t (EST), skew-t (ST) and the symmetric student-t (T) distribution. Analogous normal cases unified skew-normal (SUN), extended skew-normal (ESN), skew-normal (SN), and symmetric normal (N) are also included. Density, probabilities and random deviates are also offered for these members.
References used for this package:
Arellano-Valle, R. B. & Genton, M. G. (2005). On fundamental skew distributions. Journal of Multivariate Analysis, 96, 93-116.
Galarza C.E., Matos L.A., Dey D.K. & Lachos V.H. (2019) On Moments of Folded and Truncated Multivariate Extended Skew-Normal Distributions. Technical report. ID 19-14. University of Connecticut. <https://stat.uconn.edu/tech-reports-2019/>.
Author: Christian E. Galarza, Raymond Kan and Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between MomTrunc versions 5.57 dated 2020-01-09 and 5.63 dated 2020-01-19
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NAMESPACE | 5 +++-- R/AUX_hfuns.R | 4 ++-- R/AUX_qfuns.R | 10 +++++----- R/FN_cdf.R | 2 +- R/FN_mom.R | 2 +- R/TN_mean.R | 4 ++-- R/TN_mom.R | 3 ++- R/TN_mv_Kan.R | 47 +++++++++++++++++++++++++++++++---------------- R/USER_dmvEST.R | 10 ++++------ R/USER_pmvEST.R | 14 +++++++++++--- build/partial.rdb |binary src/my_functions.cpp | 30 ++++++++++++++++++++++++------ 14 files changed, 103 insertions(+), 62 deletions(-)
Title: Microbial Pan-Genome Analysis
Description: A collection of functions for computations and visualizations of microbial pan-genomes.
Author: Lars Snipen and Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>
Diff between micropan versions 1.2 dated 2018-02-15 and 2.0 dated 2020-01-19
micropan-1.2/micropan/R/RcppExports.R |only micropan-1.2/micropan/R/gff.R |only micropan-1.2/micropan/R/mpneumoniae.R |only micropan-1.2/micropan/R/orfs.R |only micropan-1.2/micropan/R/prodigal.R |only micropan-1.2/micropan/R/ssu.R |only micropan-1.2/micropan/R/trees.R |only micropan-1.2/micropan/data/Mpneumoniae.blast.clustering.rda |only micropan-1.2/micropan/data/Mpneumoniae.blast.distances.rda |only micropan-1.2/micropan/data/Mpneumoniae.blast.panmat.rda |only micropan-1.2/micropan/data/Mpneumoniae.domain.clustering.rda |only micropan-1.2/micropan/data/Mpneumoniae.domain.panmat.rda |only micropan-1.2/micropan/data/Mpneumoniae.table.rda |only micropan-1.2/micropan/inst/doc/casestudy.pdf |only micropan-1.2/micropan/inst/extdata/Example.gff.xz |only micropan-1.2/micropan/inst/extdata/Example_genome.fasta.xz |only micropan-1.2/micropan/inst/extdata/Example_proteins.fasta.xz |only micropan-1.2/micropan/inst/extdata/Example_proteins_GID1.fasta.xz |only micropan-1.2/micropan/inst/extdata/Example_proteins_GID2.fasta.xz |only micropan-1.2/micropan/inst/extdata/Example_proteins_GID3.fasta.xz |only micropan-1.2/micropan/inst/extdata/GID1_vs_GID1.txt.xz |only micropan-1.2/micropan/inst/extdata/GID1_vs_GID2.txt.xz |only micropan-1.2/micropan/inst/extdata/GID1_vs_GID3.txt.xz |only micropan-1.2/micropan/inst/extdata/GID1_vs_Pfam-A.hmm.txt.xz |only micropan-1.2/micropan/inst/extdata/GID2_vs_GID1.txt.xz |only micropan-1.2/micropan/inst/extdata/GID2_vs_GID2.txt.xz |only micropan-1.2/micropan/inst/extdata/GID2_vs_GID3.txt.xz |only micropan-1.2/micropan/inst/extdata/GID2_vs_Pfam-A.hmm.txt.xz |only micropan-1.2/micropan/inst/extdata/GID3_vs_GID1.txt.xz |only micropan-1.2/micropan/inst/extdata/GID3_vs_GID2.txt.xz |only micropan-1.2/micropan/inst/extdata/GID3_vs_GID3.txt.xz |only micropan-1.2/micropan/inst/extdata/GID3_vs_Pfam-A.hmm.txt.xz |only micropan-1.2/micropan/inst/extdata/Mpneumoniae.txt.xz |only micropan-1.2/micropan/man/barrnap.Rd |only micropan-1.2/micropan/man/blastAllAll.Rd |only micropan-1.2/micropan/man/findOrfs.Rd |only micropan-1.2/micropan/man/generic.Binomix.Rd |only micropan-1.2/micropan/man/generic.Panmat.Rd |only micropan-1.2/micropan/man/generic.Panpca.Rd |only micropan-1.2/micropan/man/generic.Pantree.Rd |only micropan-1.2/micropan/man/generic.Rarefac.Rd |only micropan-1.2/micropan/man/gff2fasta.Rd |only micropan-1.2/micropan/man/gffSignature.Rd |only micropan-1.2/micropan/man/lorfs.Rd |only micropan-1.2/micropan/man/mpneumoniae.Rd |only micropan-1.2/micropan/man/orfLength.Rd |only micropan-1.2/micropan/man/panTree.Rd |only micropan-1.2/micropan/man/panpca.Rd |only micropan-1.2/micropan/man/prodigal.Rd |only micropan-1.2/micropan/man/readBlastTable.Rd |only micropan-1.2/micropan/man/readGFF.Rd |only micropan-1.2/micropan/man/scores.loadings.Rd |only micropan-1.2/micropan/src |only micropan-2.0/micropan/DESCRIPTION | 17 micropan-2.0/micropan/MD5 | 171 ++--- micropan-2.0/micropan/NAMESPACE | 72 -- micropan-2.0/micropan/R/bclust.R | 207 ++---- micropan-2.0/micropan/R/bdist.R | 259 ++----- micropan-2.0/micropan/R/binomix.R | 321 +++------ micropan-2.0/micropan/R/blasting.R | 191 ++--- micropan-2.0/micropan/R/domainclust.R | 155 ++-- micropan-2.0/micropan/R/entrez.R | 144 ++-- micropan-2.0/micropan/R/extern.R | 42 - micropan-2.0/micropan/R/genomedistances.R | 145 ++-- micropan-2.0/micropan/R/hmmer3.R | 149 ++-- micropan-2.0/micropan/R/micropan.R | 3 micropan-2.0/micropan/R/panmat.R | 117 --- micropan-2.0/micropan/R/panpca.R | 339 +--------- micropan-2.0/micropan/R/panprep.R | 94 +- micropan-2.0/micropan/R/powerlaw.R | 81 +- micropan-2.0/micropan/R/rarefaction.R | 123 +-- micropan-2.0/micropan/R/xmpl.R |only micropan-2.0/micropan/R/xz.R | 65 - micropan-2.0/micropan/build/vignette.rds |binary micropan-2.0/micropan/data/xmpl.bclst.rda |only micropan-2.0/micropan/data/xmpl.bdist.rda |only micropan-2.0/micropan/data/xmpl.panmat.rda |only micropan-2.0/micropan/inst/doc/vignette.R | 12 micropan-2.0/micropan/inst/doc/vignette.Rnw | 81 -- micropan-2.0/micropan/inst/doc/vignette.pdf |binary micropan-2.0/micropan/inst/extdata/GID1_vs_GID1_.txt.xz |only micropan-2.0/micropan/inst/extdata/GID1_vs_microfam.hmm.txt.xz |only micropan-2.0/micropan/inst/extdata/GID2_vs_GID1_.txt.xz |only micropan-2.0/micropan/inst/extdata/GID2_vs_GID2_.txt.xz |only micropan-2.0/micropan/inst/extdata/GID2_vs_microfam.hmm.txt.xz |only micropan-2.0/micropan/inst/extdata/GID3_vs_GID1_.txt.xz |only micropan-2.0/micropan/inst/extdata/GID3_vs_GID2_.txt.xz |only micropan-2.0/micropan/inst/extdata/GID3_vs_GID3_.txt.xz |only micropan-2.0/micropan/inst/extdata/GID3_vs_microfam.hmm.txt.xz |only micropan-2.0/micropan/inst/extdata/microfam.hmm.h3f.xz |binary micropan-2.0/micropan/inst/extdata/microfam.hmm.h3i.xz |binary micropan-2.0/micropan/inst/extdata/microfam.hmm.h3m.xz |binary micropan-2.0/micropan/inst/extdata/microfam.hmm.h3p.xz |binary micropan-2.0/micropan/inst/extdata/xmpl.faa.xz |only micropan-2.0/micropan/inst/extdata/xmpl_GID1.faa.xz |only micropan-2.0/micropan/inst/extdata/xmpl_GID2.faa.xz |only micropan-2.0/micropan/inst/extdata/xmpl_GID3.faa.xz |only micropan-2.0/micropan/man/bClust.Rd | 155 ++-- micropan-2.0/micropan/man/bDist.Rd | 154 ++-- micropan-2.0/micropan/man/binomixEstimate.Rd | 251 +++---- micropan-2.0/micropan/man/blastpAllAll.Rd |only micropan-2.0/micropan/man/chao.Rd | 98 +- micropan-2.0/micropan/man/dClust.Rd | 154 ++-- micropan-2.0/micropan/man/distJaccard.Rd | 98 +- micropan-2.0/micropan/man/distManhattan.Rd | 140 ++-- micropan-2.0/micropan/man/entrezDownload.Rd | 121 +-- micropan-2.0/micropan/man/fluidity.Rd | 109 +-- micropan-2.0/micropan/man/geneWeights.Rd | 99 +- micropan-2.0/micropan/man/getAccessions.Rd | 99 +- micropan-2.0/micropan/man/heaps.Rd | 117 +-- micropan-2.0/micropan/man/hmmerCleanOverlap.Rd | 72 +- micropan-2.0/micropan/man/hmmerScan.Rd | 195 ++--- micropan-2.0/micropan/man/isOrtholog.Rd | 116 +-- micropan-2.0/micropan/man/micropan.Rd | 41 - micropan-2.0/micropan/man/panMatrix.Rd | 125 +-- micropan-2.0/micropan/man/panPca.Rd |only micropan-2.0/micropan/man/panPrep.Rd | 161 ++-- micropan-2.0/micropan/man/rarefaction.Rd | 111 +-- micropan-2.0/micropan/man/readHmmer.Rd | 87 +- micropan-2.0/micropan/man/xmpl.Rd |only micropan-2.0/micropan/man/xz.Rd | 137 ++-- micropan-2.0/micropan/vignettes/vignette.Rnw | 81 -- 122 files changed, 2379 insertions(+), 3130 deletions(-)
Title: Statistical Procedures for Agricultural Research
Description: Original idea was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, National Engineering University (UNI), Lima-Peru. Some experimental data for the examples come from the CIP and others research. Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.
Author: Felipe de Mendiburu
Maintainer: Felipe de Mendiburu <fmendiburu@lamolina.edu.pe>
Diff between agricolae versions 1.3-1 dated 2019-04-04 and 1.3-2 dated 2020-01-19
DESCRIPTION | 10 - MD5 | 110 +++++++-------- NAMESPACE | 1 NEWS | 295 +++++++++++++++++++++-------------------- R/order.group.R | 5 R/orderPvalue.R | 8 - R/plot.AMMI.R | 19 -- build/vignette.rds |binary data/CIC.rda |binary data/Chz2006.rda |binary data/ComasOxapampa.rda |binary data/DC.rda |binary data/Glycoalkaloids.rda |binary data/Hco2006.rda |binary data/LxT.rda |binary data/RioChillon.rda |binary data/clay.rda |binary data/corn.rda |binary data/cotton.rda |binary data/disease.rda |binary data/frijol.rda |binary data/genxenv.rda |binary data/grass.rda |binary data/greenhouse.rda |binary data/growth.rda |binary data/haynes.rda |binary data/heterosis.rda |binary data/huasahuasi.rda |binary data/markers.rda |binary data/melon.rda |binary data/natives.rda |binary data/pamCIP.rda |binary data/paracsho.rda |binary data/plots.rda |binary data/plrv.rda |binary data/potato.rda |binary data/ralstonia.rda |binary data/rice.rda |binary data/sinRepAmmi.rda |binary data/soil.rda |binary data/sweetpotato.rda |binary data/wilt.rda |binary data/yacon.rda |binary inst/doc/tutorial.R | 333 ++++++++++++++++++++++++----------------------- inst/doc/tutorial.Rnw | 74 +++++----- inst/doc/tutorial.pdf |binary man/agricolae-package.Rd | 4 man/bar.err.Rd | 4 man/bar.group.Rd | 13 - man/consensus.Rd | 1 man/order.group.Rd | 5 man/orderPvalue.Rd | 7 man/plotAMMI.Rd | 20 -- man/strip.plot.Rd | 3 man/waller.test.Rd | 3 vignettes/tutorial.Rnw | 74 +++++----- 56 files changed, 494 insertions(+), 495 deletions(-)
Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge <clement.calenge@ofb.gouv.fr>
Diff between adehabitatLT versions 0.3.24 dated 2019-04-07 and 0.3.25 dated 2020-01-19
adehabitatLT-0.3.24/adehabitatLT/build |only adehabitatLT-0.3.24/adehabitatLT/inst/doc/adehabitatLT.R |only adehabitatLT-0.3.24/adehabitatLT/inst/doc/adehabitatLT.Rnw |only adehabitatLT-0.3.25/adehabitatLT/DESCRIPTION | 10 - adehabitatLT-0.3.25/adehabitatLT/MD5 | 95 ++++++------- adehabitatLT-0.3.25/adehabitatLT/R/as.ltraj.r | 23 +++ adehabitatLT-0.3.25/adehabitatLT/R/rasterize.r | 5 adehabitatLT-0.3.25/adehabitatLT/inst/doc/adehabitatLT.pdf |binary adehabitatLT-0.3.25/adehabitatLT/man/Chi.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/Extract.ltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/as.ltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/burst.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/c.ltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/cutltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/fpt.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/gdltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/hbrown.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/hist.ltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/indmove.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/is.regular.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/is.sd.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/lavielle.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/ld.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/ltraj2sldf.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/mindistkeep.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/modpartltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/na.omit.ltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/offsetdate.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/plot.ltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/plotltr.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/qqchi.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/rasterize.ltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/redisltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/residenceTime.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/set.limits.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/setNA.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/sett0.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/showNAltraj.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/simm.bb.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/simm.brown.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/simm.crw.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/simm.levy.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/simm.mba.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/simm.mou.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/sliwinltr.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/subsample.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/testNM.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/trajdyn.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/typeII2typeI.Rd | 2 adehabitatLT-0.3.25/adehabitatLT/man/which.ltraj.Rd | 2 50 files changed, 118 insertions(+), 99 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.11-2 dated 2018-11-05 and 0.12-0 dated 2020-01-19
xts-0.11-2/xts/R/indexClass.R |only xts-0.11-2/xts/R/indexFormat.R |only xts-0.11-2/xts/R/indexTZ.R |only xts-0.11-2/xts/inst/unitTests/Makefile |only xts-0.11-2/xts/man/indexClass.Rd |only xts-0.11-2/xts/man/indexTZ.Rd |only xts-0.12-0/xts/DESCRIPTION | 6 xts-0.12-0/xts/MD5 | 128 ++--- xts-0.12-0/xts/NAMESPACE | 19 xts-0.12-0/xts/NEWS | 47 + xts-0.12-0/xts/R/Ops.xts.R | 36 - xts-0.12-0/xts/R/align.time.R | 4 xts-0.12-0/xts/R/all.equal.R |only xts-0.12-0/xts/R/bind.R | 11 xts-0.12-0/xts/R/coredata.xts.R | 22 xts-0.12-0/xts/R/endpoints.R | 10 xts-0.12-0/xts/R/first.R | 36 + xts-0.12-0/xts/R/index.R | 57 +- xts-0.12-0/xts/R/irts.R | 2 xts-0.12-0/xts/R/lag.xts.R | 6 xts-0.12-0/xts/R/last.R | 36 + xts-0.12-0/xts/R/matrix.R | 2 xts-0.12-0/xts/R/merge.R | 249 ---------- xts-0.12-0/xts/R/parse8601.R | 24 xts-0.12-0/xts/R/period.R | 8 xts-0.12-0/xts/R/periodicity.R | 2 xts-0.12-0/xts/R/plot.R | 6 xts-0.12-0/xts/R/print.R | 2 xts-0.12-0/xts/R/str.R | 4 xts-0.12-0/xts/R/tclass.R |only xts-0.12-0/xts/R/tformat.R |only xts-0.12-0/xts/R/toperiod.R | 16 xts-0.12-0/xts/R/ts.R | 2 xts-0.12-0/xts/R/tzone.R |only xts-0.12-0/xts/R/xts.R | 95 ++- xts-0.12-0/xts/R/xts.methods.R | 74 ++- xts-0.12-0/xts/R/zzz.R | 4 xts-0.12-0/xts/build/vignette.rds |binary xts-0.12-0/xts/inst/benchmarks/benchmark.binsearch.R |only xts-0.12-0/xts/inst/benchmarks/benchmark.eval.dots.R |only xts-0.12-0/xts/inst/doc/xts-faq.R | 2 xts-0.12-0/xts/inst/doc/xts-faq.Rnw | 2 xts-0.12-0/xts/inst/doc/xts-faq.pdf |binary xts-0.12-0/xts/inst/doc/xts.R | 6 xts-0.12-0/xts/inst/doc/xts.Rnw | 10 xts-0.12-0/xts/inst/doc/xts.pdf |binary xts-0.12-0/xts/inst/include/xts.h | 30 - xts-0.12-0/xts/inst/unitTests/runit.Ops.R | 465 +++++++++++++++++++ xts-0.12-0/xts/inst/unitTests/runit.all.equal.R |only xts-0.12-0/xts/inst/unitTests/runit.diff.R | 7 xts-0.12-0/xts/inst/unitTests/runit.endpoints.R | 11 xts-0.12-0/xts/inst/unitTests/runit.first-last.R | 45 + xts-0.12-0/xts/inst/unitTests/runit.index.R |only xts-0.12-0/xts/inst/unitTests/runit.matrix.R | 8 xts-0.12-0/xts/inst/unitTests/runit.merge.R | 11 xts-0.12-0/xts/inst/unitTests/runit.parseISO8601.R |only xts-0.12-0/xts/inst/unitTests/runit.subset.R | 58 ++ xts-0.12-0/xts/inst/unitTests/runit.tclass.R |only xts-0.12-0/xts/inst/unitTests/runit.tformat.R |only xts-0.12-0/xts/inst/unitTests/runit.tzone.R |only xts-0.12-0/xts/inst/unitTests/runit.xts.R | 138 +++++ xts-0.12-0/xts/man/plot.xts.Rd | 8 xts-0.12-0/xts/man/subset.xts.Rd | 2 xts-0.12-0/xts/man/tclass.Rd |only xts-0.12-0/xts/man/tzone.Rd |only xts-0.12-0/xts/man/xts.Rd | 2 xts-0.12-0/xts/man/xtsAPI.Rd | 12 xts-0.12-0/xts/src/attr.c | 20 xts-0.12-0/xts/src/diff.c | 3 xts-0.12-0/xts/src/init.c | 15 xts-0.12-0/xts/src/merge.c | 60 +- xts-0.12-0/xts/src/rbind.c | 7 xts-0.12-0/xts/src/runSum.c | 2 xts-0.12-0/xts/vignettes/xts-faq.Rnw | 2 xts-0.12-0/xts/vignettes/xts.Rnw | 10 75 files changed, 1249 insertions(+), 595 deletions(-)
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.19.0 dated 2019-09-07 and 2.21.0-1 dated 2020-01-19
StanHeaders-2.19.0/StanHeaders/inst/include/src/stan/io/json |only StanHeaders-2.19.0/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar_def.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar_inst.cpp |only StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/fwd/scal/meta/ad_promotable.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/opencl/add.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/opencl/constants.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/opencl/kernels/zeros.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/opencl/lower_tri_inverse.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/opencl/subtract.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/opencl/transpose.hpp |only 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StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver.hpp |only StanHeaders-2.19.0/StanHeaders/inst/include/stan/math/rev/scal/meta/ad_promotable.hpp |only StanHeaders-2.21.0-1/StanHeaders/DESCRIPTION | 15 StanHeaders-2.21.0-1/StanHeaders/MD5 | 3443 +++++----- StanHeaders-2.21.0-1/StanHeaders/NAMESPACE | 1 StanHeaders-2.21.0-1/StanHeaders/R |only StanHeaders-2.21.0-1/StanHeaders/build/vignette.rds |binary StanHeaders-2.21.0-1/StanHeaders/inst/CITATION | 6 StanHeaders-2.21.0-1/StanHeaders/inst/doc/stanmath.R | 35 StanHeaders-2.21.0-1/StanHeaders/inst/doc/stanmath.Rmd | 56 StanHeaders-2.21.0-1/StanHeaders/inst/doc/stanmath.html | 432 - StanHeaders-2.21.0-1/StanHeaders/inst/include/kinsol |only StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/analyze/mcmc/autocovariance.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/analyze/mcmc/compute_effective_sample_size.hpp | 292 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StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/cmd_line.hpp | 519 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/dump.hpp | 1470 ++-- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/empty_var_context.hpp | 184 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/ends_with.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/is_whitespace.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/program_reader.hpp | 79 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/random_var_context.hpp | 479 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/read_line.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/reader.hpp | 139 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/stan_csv_reader.hpp | 667 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/starts_with.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/trim_spaces.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/util.hpp | 51 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/validate_zero_buf.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/var_context.hpp | 485 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/writer.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_is_data_vis.hpp | 152 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_is_data_vis_def.hpp | 68 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_order_id_vis.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_order_id_vis_def.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_set_is_data_vis.hpp | 136 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_set_is_data_vis_def.hpp | 70 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_total_dims_vis.hpp | 138 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_total_dims_vis_def.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_vis.hpp | 360 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_bounds_vis.hpp | 264 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_is_specialized_vis.hpp | 267 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_offset_multiplier_vis_def.hpp | 60 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/ends_with.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/ends_with_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/fun_name_exists.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/fun_name_exists_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/generate_expression.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_ccdf.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_ccdf_def.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_cdf.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_cdf_def.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_prob_fun.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_prob_fun_def.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_ccdf_suffix.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_ccdf_suffix_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_cdf_suffix.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_cdf_suffix_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_lp_suffix.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_lp_suffix_def.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_def.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis.hpp | 386 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis_def.hpp | 296 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_prob_fun_suffix.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_prob_fun_suffix_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_rng_suffix.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_rng_suffix_def.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_vis.hpp | 418 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_vis_def.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/infer_type_indexing.hpp | 25 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/infer_type_indexing_def.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_assignable.hpp | 43 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_assignable_def.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_multi_index.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_multi_index_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_multi_index_vis.hpp | 110 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_multi_index_vis_def.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_vis.hpp | 94 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_vis_def.hpp | 98 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_no_op_statement_vis.hpp | 304 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_no_op_statement_vis_def.hpp | 134 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nonempty.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nonempty_def.hpp | 18 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_space.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_space_def.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined_def.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined_prob_function.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined_prob_function_def.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/num_index_op_dims.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/print_scope.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/print_scope_def.hpp | 66 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/promote_primitive.hpp | 58 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/promote_primitive_def.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type_vis.hpp | 415 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type_vis_def.hpp | 208 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_ccdf_suffix.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_cdf_suffix.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_prob_fun_suffix.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/template.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis.hpp | 428 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis_def.hpp | 186 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg1_vis.hpp | 362 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg1_vis_def.hpp | 219 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg2_vis.hpp | 367 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg2_vis_def.hpp | 219 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/write_bare_expr_type.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/write_bare_expr_type_def.hpp | 61 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/write_block_var_type.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/write_idx_vis_def.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/nil.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver.hpp | 104 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_control.hpp | 149 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_control_def.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_def.hpp | 23 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/assgn.hpp | 155 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/assgn_def.hpp | 41 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/binary_op.hpp | 88 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/binary_op_def.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/block_var_decl_def.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/break_continue_statement.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/break_continue_statement_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_op.hpp | 113 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_op_def.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_statement.hpp | 66 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_statement_def.hpp | 18 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/distribution.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/expression.hpp | 151 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/expression_def.hpp | 104 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_array_statement.hpp | 77 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_array_statement_def.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_matrix_statement.hpp | 77 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_matrix_statement_def.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_statement.hpp | 76 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_statement_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/fun.hpp | 91 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/fun_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_def.hpp | 109 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_def_def.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_defs.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_defs_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/idx.hpp | 143 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/idx_def.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/increment_log_prob_statement.hpp | 54 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/increment_log_prob_statement_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/index_op.hpp | 85 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/index_op_sliced.hpp | 87 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/index_op_sliced_def.hpp | 18 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal.hpp | 52 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal_def.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_1d.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_1d_def.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode.hpp | 145 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_control.hpp | 190 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_control_def.hpp | 38 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_def.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/lb_idx.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/lb_idx_def.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/local_var_decl_def.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/lub_idx.hpp | 63 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/lub_idx_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/map_rect.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/map_rect_def.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_expr.hpp | 78 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_expr_def.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/multi_idx.hpp | 38 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/multi_idx_def.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/no_op_statement.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/omni_idx.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/omni_idx_def.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/print_statement.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/print_statement_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/printable.hpp | 104 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/printable_def.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/program.hpp | 177 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/program_def.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/range.hpp | 92 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/range_def.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/reject_statement.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/reject_statement_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/return_statement.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/return_statement_def.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_expr.hpp | 78 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_expr_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/sample.hpp | 111 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/sample_def.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/statement.hpp | 414 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/statement_def.hpp | 53 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/statements.hpp | 70 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/statements_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/ub_idx.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/ub_idx_def.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/unary_op.hpp | 74 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/unary_op_def.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/uni_idx.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/uni_idx_def.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/var_decl.hpp | 152 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/var_decl_def.hpp | 45 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/variable.hpp | 72 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/variable_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/variable_dims.hpp | 65 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/variable_dims_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/while_statement.hpp | 65 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/while_statement_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/origin_block.hpp | 160 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/scope.hpp | 294 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/scope_def.hpp | 173 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signature_t.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signatures.hpp | 813 +- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signatures_def.hpp | 921 +- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/bare_array_type_def.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/block_array_type_def.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/cholesky_factor_corr_block_type.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/cholesky_factor_cov_block_type.hpp | 87 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/double_block_type_def.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/double_type.hpp | 58 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/double_type_def.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/ill_formed_type.hpp | 47 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/ill_formed_type_def.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/int_block_type_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/int_type.hpp | 59 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/int_type_def.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/local_array_type_def.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/local_var_type.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/local_var_type_def.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_block_type_def.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_local_type.hpp | 83 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_type.hpp | 58 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_type_def.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_block_type_def.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_local_type_def.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_type.hpp | 58 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_type_def.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/vector_block_type_def.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/vector_type.hpp | 58 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/vector_type_def.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/void_type.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/void_type_def.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/variable_map.hpp | 167 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/variable_map_def.hpp | 65 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/compile_functions.hpp | 83 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/compiler.hpp | 75 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/function_signatures.h | 139 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/constants.hpp | 84 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/expression_visgen.hpp | 603 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/fun_scalar_type.hpp | 90 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_arg_decl.hpp | 50 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_array_builder_adds.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_bare_type.hpp | 99 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_block_var.hpp | 89 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_catch_throw_located.hpp | 51 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_class_decl.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_class_decl_end.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_comment.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_constrained_param_names_method.hpp | 65 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_constructor.hpp | 217 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_cpp.hpp | 88 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_data_var_ctor.hpp | 52 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_data_var_init.hpp | 85 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_destructor.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_dims_method.hpp | 94 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_expression.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_fun_inst_templ_params.hpp | 103 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function.hpp | 71 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_arguments.hpp | 118 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_body.hpp | 75 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_functor.hpp | 83 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_inline_return_type.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation.hpp | 86 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation_body.hpp | 110 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation_name.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiations.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_name.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_template_parameters.hpp | 106 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_functions.hpp | 38 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_functor_arguments.hpp | 68 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_globals.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_idx.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_idx_user.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_idxs.hpp | 65 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_idxs_user.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_include.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_includes.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_indent.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_indexed_expr.hpp | 128 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_indexed_expr_user.hpp | 54 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_initializer.hpp | 87 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_line_number.hpp | 41 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_local_var_decl_inits.hpp | 122 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_log_prob.hpp | 204 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_member_var_decls.hpp | 64 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_member_var_decls_all.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_model_name_method.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_model_typedef.hpp | 38 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_namespace_end.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_namespace_start.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_param_names_array.hpp | 77 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_param_names_method.hpp | 53 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_param_var.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_printable.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_private_decl.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_program_reader_fun.hpp | 53 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_propto_default_function.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_propto_default_function_body.hpp | 53 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_public_decl.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_quoted_expression.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_quoted_string.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_read_transform_params.hpp | 101 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_real_var_type.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_register_mpi.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_set_param_ranges.hpp | 89 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_standalone_functions.hpp | 82 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_statement.hpp | 43 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_statements.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_transform_inits_method.hpp | 302 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_try.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_typedef.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_typedefs.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_unconstrained_param_names_array.hpp | 80 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_unconstrained_param_names_method.hpp | 68 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_using.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_using_namespace.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_usings.hpp | 38 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_usings_standalone_functions.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_block_var.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_context_size.hpp | 82 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_nonnegative.hpp | 62 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_tparam_inits.hpp | 93 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_var_decl.hpp | 116 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_var_dims.hpp | 69 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_var_constructor.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_var_fill_define.hpp | 61 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_version_comment.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_void_statement.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_write_array_method.hpp | 283 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_write_block_var.hpp | 41 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/get_block_var_dims.hpp | 55 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/get_typedef_var_type.hpp | 41 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/get_verbose_var_type.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/idx_user_visgen.hpp | 82 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/idx_visgen.hpp | 92 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/is_numbered_statement_vis.hpp | 68 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/printable_visgen.hpp | 64 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/statement_visgen.hpp | 699 +- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/visgen.hpp | 100 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_begin_all_dims_col_maj_loop.hpp | 139 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_begin_all_dims_row_maj_loop.hpp | 139 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_begin_array_dims_loop.hpp | 68 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_begin_param_elements_loop.hpp | 147 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_constraints_fn.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_end_loop.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_nested_resize_loop_begin.hpp | 108 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_resize_var_idx.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_decl_arg.hpp | 130 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_decl_type.hpp | 70 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_all_dims.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_all_dims_msg.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_array_dims.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar.hpp | 54 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar_def.hpp | 93 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/block_var_decls_grammar_def.hpp | 284 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/block_var_decls_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/common_adaptors_def.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar.hpp | 51 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar_def.hpp | 58 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar.hpp | 70 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar_def.hpp | 157 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar.hpp | 72 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_def.hpp | 167 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar.hpp | 91 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_def.hpp | 158 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_inst.cpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/iterator_typedefs.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar.hpp | 115 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar_def.hpp | 248 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar.hpp | 110 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_def.hpp | 252 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions_def.cpp | 439 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar.hpp | 52 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar_def.hpp | 92 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar.hpp | 190 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_def.hpp | 612 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar.hpp | 169 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_def.hpp | 654 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar.hpp | 21 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar_def.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar_inst.cpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/parser.hpp | 186 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/rethrow_located.hpp | 284 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/base_adaptation.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/base_adapter.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/base_mcmc.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/chains.hpp | 1052 +-- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/covar_adaptation.hpp | 54 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/fixed_param_sampler.hpp | 21 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/base_hmc.hpp | 337 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp | 173 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp | 97 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/dense_e_point.hpp | 113 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp | 88 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/diag_e_point.hpp | 108 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/ps_point.hpp | 134 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/softabs_metric.hpp | 354 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/softabs_point.hpp | 55 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/unit_e_metric.hpp | 85 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/unit_e_point.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/base_integrator.hpp | 25 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/base_leapfrog.hpp | 228 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/expl_leapfrog.hpp | 50 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/impl_leapfrog.hpp | 173 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_dense_e_nuts.hpp | 79 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp | 79 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_softabs_nuts.hpp | 66 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_unit_e_nuts.hpp | 66 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp | 626 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/dense_e_nuts.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/diag_e_nuts.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/softabs_nuts.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/unit_e_nuts.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_dense_e_nuts_classic.hpp | 84 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_diag_e_nuts_classic.hpp | 86 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_unit_e_nuts_classic.hpp | 67 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/base_nuts_classic.hpp | 368 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/dense_e_nuts_classic.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/diag_e_nuts_classic.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/unit_e_nuts_classic.hpp | 37 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_dense_e_static_hmc.hpp | 92 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_diag_e_static_hmc.hpp | 87 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_softabs_static_hmc.hpp | 72 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_unit_e_static_hmc.hpp | 74 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/base_static_hmc.hpp | 237 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/dense_e_static_hmc.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/diag_e_static_hmc.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/softabs_static_hmc.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/unit_e_static_hmc.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_dense_e_static_uniform.hpp | 88 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_diag_e_static_uniform.hpp | 87 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_softabs_static_uniform.hpp | 63 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_unit_e_static_uniform.hpp | 74 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/base_static_uniform.hpp | 281 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/dense_e_static_uniform.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/diag_e_static_uniform.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/softabs_static_uniform.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/unit_e_static_uniform.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_dense_e_xhmc.hpp | 85 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_diag_e_xhmc.hpp | 85 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_softabs_xhmc.hpp | 66 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_unit_e_xhmc.hpp | 67 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/base_xhmc.hpp | 522 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/dense_e_xhmc.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/diag_e_xhmc.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/softabs_xhmc.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/unit_e_xhmc.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/sample.hpp | 83 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_adaptation.hpp | 169 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_adapter.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_covar_adapter.hpp | 57 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_var_adapter.hpp | 58 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/var_adaptation.hpp | 52 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/windowed_adaptation.hpp | 231 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/finite_diff_grad.hpp | 95 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/grad_hess_log_prob.hpp | 120 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/grad_tr_mat_times_hessian.hpp | 25 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/gradient.hpp | 50 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/gradient_dot_vector.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/hessian.hpp | 25 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/hessian_times_vector.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/deep_copy.hpp | 112 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/index.hpp | 193 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/index_list.hpp | 123 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/lvalue.hpp | 877 +- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/rvalue.hpp | 700 -- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/rvalue_at.hpp | 130 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/rvalue_index_size.hpp | 118 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/rvalue_return.hpp | 410 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/log_prob_grad.hpp | 165 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/log_prob_propto.hpp | 178 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/model_base.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/model_base_crtp.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/model_functional.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/model_header.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/prob_grad.hpp | 113 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/standalone_functions_header.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/test_gradients.hpp | 174 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/bfgs.hpp | 785 +- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/bfgs_linesearch.hpp | 547 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/bfgs_update.hpp | 111 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/lbfgs_update.hpp | 206 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/newton.hpp | 124 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/diagnose/defaults.hpp | 137 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/diagnose/diagnose.hpp | 100 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/error_codes.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/experimental/advi/defaults.hpp | 630 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/experimental/advi/fullrank.hpp | 152 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/experimental/advi/meanfield.hpp | 152 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/optimize/bfgs.hpp | 325 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/optimize/defaults.hpp | 624 - StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/optimize/lbfgs.hpp | 329 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/optimize/newton.hpp | 207 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/defaults.hpp | 969 +- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/fixed_param.hpp | 130 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_dense_e.hpp | 241 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp | 299 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_diag_e.hpp | 239 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp | 295 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_unit_e.hpp | 116 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_unit_e_adapt.hpp | 138 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_dense_e.hpp | 238 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_dense_e_adapt.hpp | 300 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_diag_e.hpp | 238 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_diag_e_adapt.hpp | 298 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_unit_e.hpp | 115 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_unit_e_adapt.hpp | 139 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/standalone_gqs.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/create_rng.hpp | 55 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/create_unit_e_dense_inv_metric.hpp | 54 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/create_unit_e_diag_inv_metric.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/experimental_message.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/generate_transitions.hpp | 127 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/gq_writer.hpp | 165 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/initialize.hpp | 95 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/mcmc_writer.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/read_dense_inv_metric.hpp | 67 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/read_diag_inv_metric.hpp | 68 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/run_adaptive_sampler.hpp | 157 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/run_sampler.hpp | 130 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/validate_dense_inv_metric.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/validate_diag_inv_metric.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/advi.hpp | 1043 +-- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/base_family.hpp | 196 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/families/normal_fullrank.hpp | 970 +- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/families/normal_meanfield.hpp | 848 +- StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/print_progress.hpp | 87 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/version.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/arr.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/arr/fun/log_sum_exp.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/arr/fun/sum.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/arr/fun/to_fvar.hpp | 37 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/core/fvar.hpp | 43 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/Eigen_NumTraits.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/columns_dot_product.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/columns_dot_self.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/crossprod.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/determinant.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/divide.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/dot_product.hpp | 38 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/dot_self.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/inverse.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_determinant.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_softmax.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_sum_exp.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left_ldlt.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left_tri_low.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_right.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_right_tri_low.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply_lower_tri_self_transpose.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/qr_Q.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/qr_R.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/quad_form_sym.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/rows_dot_product.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/rows_dot_self.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/softmax.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/squared_distance.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/sum.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/tcrossprod.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/to_fvar.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/typedefs.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/unit_vector_constrain.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/functor/gradient.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/functor/hessian.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/functor/jacobian.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/meta/operands_and_partials.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/vectorize/apply_scalar_unary.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/meta.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi_approx.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/abs.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/acos.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/acosh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/asin.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/asinh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan2.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atanh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/bessel_first_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/bessel_second_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/beta.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/binary_log_loss.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/binomial_coefficient_log.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/cbrt.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/ceil.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/cos.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/cosh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/digamma.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/erf.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/erfc.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/exp.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/exp2.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/expm1.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fabs.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/falling_factorial.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fdim.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/floor.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fma.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmax.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmin.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmod.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_p.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_q.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/grad_inc_beta.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/hypot.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inc_beta.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_Phi.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_cloglog.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_logit.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_sqrt.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_square.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/is_inf.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/is_nan.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lbeta.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/ldexp.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lgamma.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lmgamma.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log10.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_exp.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_inv_logit.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p_exp.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log2.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_diff_exp.hpp | 25 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_falling_factorial.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_inv_logit.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_inv_logit_diff.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_mix.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_rising_factorial.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_sum_exp.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/logit.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/modified_bessel_first_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/modified_bessel_second_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/multiply_log.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/owens_t.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/pow.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/primitive_value.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/rising_factorial.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/round.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/sin.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/sinh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/sqrt.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/square.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/tan.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/tanh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/tgamma.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/to_fvar.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/trigamma.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/trunc.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/value_of.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/value_of_rec.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/meta/is_fvar.hpp | 21 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/meta/operands_and_partials.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/meta/partials_type.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/memory/stack_alloc.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/arr.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/fun/typedefs.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian.hpp | 23 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian_auto.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/grad_hessian.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/grad_tr_mat_times_hessian.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/gradient_dot_vector.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/hessian.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/hessian_times_vector.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/partial_derivative.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/meta.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/scal.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/buffer_types.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/cholesky_decompose.hpp | 89 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/copy.hpp | 256 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/copy_triangular.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/diagonal_multiply.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_diagonal_zeros.hpp | 23 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_invalid_matrix_view.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_mat_size_one.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_matching_dims.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_nan.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_opencl.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_square.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_symmetric.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_triangular.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_vector.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/identity.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/is_matrix_cl.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernel_cl.hpp | 321 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/add.hpp | 75 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/bernoulli_logit_glm_lpmf.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/categorical_logit_glm_lpmf.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/check_diagonal_zeros.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/check_nan.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/check_symmetric.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/cholesky_decompose.hpp | 45 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/copy.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/copy_triangular.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/device_functions |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/diag_inv.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/divide_columns.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/fill.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/gp_exp_quad_cov.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/helpers.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/identity.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/inv_lower_tri_multiply.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/matrix_multiply.hpp | 323 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/multiply_transpose.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/neg_binomial_2_log_glm_lpmf.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/neg_rect_lower_tri_multiply.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/normal_id_glm_lpdf.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/ordered_logistic_glm_lpmf.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/pack.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/poisson_log_glm_lpmf.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/rep_matrix.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/scalar_mul.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/scalar_mul_diagonal.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/sub_block.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/subtract.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/transpose.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/triangular_transpose.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/unpack.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/matrix_cl.hpp | 536 + StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/matrix_cl_view.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/multiply.hpp | 135 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/multiply_transpose.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/opencl.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/opencl_context.hpp | 83 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/prim |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/scalar_type.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/stringify.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/sub_block.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/tri_inverse.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/triangular_transpose.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/value_type.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/zeros.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/check_matching_sizes.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/check_nonzero_size.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/check_ordered.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/is_matching_size.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/is_nonzero_size.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/is_ordered.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/array_builder.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/common_type.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/dot.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/dot_self.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/fill.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/inverse_softmax.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/log_sum_exp.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_elements.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_scalar.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_scalar_type.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/rep_array.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/scaled_add.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/sort_asc.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/sort_desc.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/sub.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/sum.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/value_of.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/value_of_rec.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/vec_concat.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_observer.hpp | 136 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_system.hpp | 98 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_1d.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp | 77 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/VectorBuilderHelper.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/index_type.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/is_constant.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/is_vector.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/scalar_type.hpp | 25 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/value_type.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/core |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/core.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/eigen_plugins.h |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor_corr.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_column_index.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_consistent_size_mvt.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_consistent_sizes_mvt.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_corr_matrix.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cov_matrix.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_finite.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_flag_sundials.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_ldlt_factor.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_lower_triangular.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_matching_dims.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_multiplicable.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_nonempty.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_ordered.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_definite.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_semidefinite.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_positive_ordered.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_range.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_row_index.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_simplex.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_spsd_matrix.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_square.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_std_vector_index.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_symmetric.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_unit_vector.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_vector.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/constraint_tolerance.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_cholesky_factor.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_cholesky_factor_corr.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_column_index.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_corr_matrix.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_ldlt_factor.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_lower_triangular.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_mat_finite.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_matching_dims.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_pos_definite.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_square.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_symmetric.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_unit_vector.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/validate_non_negative_index.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/Eigen.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/LDLT_factor.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/MatrixExponential.h | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/accumulator.hpp | 23 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/add.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/add_diag.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/append_array.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/append_col.hpp | 45 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/append_row.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/assign.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/autocorrelation.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/chol2inv.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_constrain.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_free.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_decompose.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_factor_constrain.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_factor_free.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/common_type.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/corr_matrix_constrain.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/corr_matrix_free.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_exp_quad.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_constrain.hpp | 25 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_constrain_lkj.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_free.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_free_lkj.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_u.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_v.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_w.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_matrix_times_vector.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_to_dense_matrix.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cumulative_sum.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_post_multiply.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_pre_multiply.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/digamma.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/dims.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/distance.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/divide.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/divide_columns.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/dot_product.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/elt_divide.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/elt_multiply.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/exp2.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_U.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_cov_matrix.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/get_lp.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_dot_prod_cov.hpp | 38 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_exp_quad_cov.hpp | 588 + StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_exponential_cov.hpp | 89 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_matern32_cov.hpp | 99 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_matern52_cov.hpp | 138 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_periodic_cov.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/head.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/initialize.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/inverse_spd.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/log2.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/log_mix.hpp | 126 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/log_sum_exp.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/make_nu.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_pade.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/max.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_ldlt.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_spd.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_tri.hpp | 99 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_tri_low.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_ldlt.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_spd.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_tri.hpp | 47 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_tri_low.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mean.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/min.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/multiply.hpp | 60 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/num_elements.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/ordered_constrain.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/ordered_free.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/positive_ordered_constrain.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/positive_ordered_free.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/prod.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_elements.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_scalar.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_scalar_type.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_Q.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_R.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_thin_Q.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_thin_R.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/quad_form_diag.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/rank.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_L.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_matrix.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_row_vector.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_vector.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/resize.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sd.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/segment.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/simplex_constrain.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/simplex_free.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_asc.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_desc.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/stan_print.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sub_col.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sub_row.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/subtract.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/tail.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/tcrossprod.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_array_1d.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_array_2d.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_matrix.hpp | 53 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_row_vector.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_vector.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_gen_inv_quad_form_ldlt.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_gen_quad_form.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_inv_quad_form_ldlt.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/typedefs.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/unit_vector_constrain.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/unit_vector_free.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/value_of.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/value_of_rec.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/variance.hpp | 18 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/welford_var_estimator.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient_auto.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian.hpp | 83 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian_auto.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian_helper.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_combine.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp | 130 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_mpi.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_reduce.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/mpi_parallel_call.hpp | 37 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/append_return_type.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/as_array_or_scalar.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/as_column_vector_or_scalar.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/as_scalar.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/broadcast_array.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/index_type.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/is_constant.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/is_eigen.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/operands_and_partials.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/scalar_type.hpp | 59 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/seq_view.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/value_type.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp | 73 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_rng.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_glm_lpmf.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_log.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_lpmf.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_rng.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp | 103 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_rng.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_log.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_lpdf.hpp | 45 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_rng.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_lpdf.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_rng.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_lpdf.hpp | 59 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_rng.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_lpdf.hpp | 83 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_rng.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_log.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_lpdf.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_lpdf.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_rng.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_lpdf.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_lpdf.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_log.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_lpdf.hpp | 70 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_rng.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_lpdf.hpp | 47 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_rng.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_rng.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_lpdf.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_rng.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_log.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_lpmf.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_rng.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_log.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp | 103 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/normal_id_glm_log.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/normal_id_glm_lpdf.hpp | 137 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_glm_lpmf.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_log.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_lpmf.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_rng.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_log.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_lpmf.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp | 65 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_log.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_lpdf.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_rng.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/vectorize/apply_scalar_unary.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/meta.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal.hpp | 41 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_2F1_converges.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_3F2_converges.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_bounded.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_size.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_sizes.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_finite.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater_or_equal.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less_or_equal.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_nonnegative.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_not_nan.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_finite.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_size_match.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error_vec.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument_vec.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_less_or_equal.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_not_nan.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_positive.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_scal_finite.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_size_match.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/out_of_range.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/system_error.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/F32.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi_approx.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/abs.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/acosh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/as_bool.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/asinh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/atanh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_first_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_second_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/beta.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/binary_log_loss.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/binomial_coefficient_log.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/boost_policy.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/cbrt.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/choose.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/common_type.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/constants.hpp | 57 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/corr_constrain.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/corr_free.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/digamma.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/distance.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/divide.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/erf.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/erfc.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/exp.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/exp2.hpp | 18 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/expm1.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/falling_factorial.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fdim.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fill.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/finite_diff_stepsize.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fma.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fmax.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fmin.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/gamma_p.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/gamma_q.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_2F1.hpp | 21 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_F32.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_inc_beta.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_beta.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_gamma.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_lower_inc_gamma.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/hypot.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/ibeta.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/identity_constrain.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/identity_free.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/if_else.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_dda.hpp | 43 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_ddb.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_ddz.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/int_step.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_Phi.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_cloglog.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_logit.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_sqrt.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_square.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_any_nan.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_inf.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_integer.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nan.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nonpositive_integer.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_uninitialized.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lb_constrain.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lb_free.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lbeta.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/ldexp.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lgamma.hpp | 67 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lmgamma.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/locscale_constrain.hpp | 23 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/locscale_free.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_exp.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_inv_logit.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p_exp.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log2.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_diff_exp.hpp | 21 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_falling_factorial.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit_diff.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_mix.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_modified_bessel_first_kind.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_rising_factorial.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_sum_exp.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_and.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_eq.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_gt.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_gte.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_lt.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_lte.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_negation.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_neq.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_or.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logit.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lub_constrain.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lub_free.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_first_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_second_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/modulus.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/multiply_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/offset_multiplier_constrain.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/offset_multiplier_free.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/owens_t.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/positive_constrain.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/positive_free.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/primitive_value.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/prob_constrain.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/prob_free.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_elements.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_scalar.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_scalar_type.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/rising_factorial.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/round.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/sign.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/size_zero.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/sqrt.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/square.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/squared_distance.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/step.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/sum.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/tgamma.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/trigamma.hpp | 23 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/trunc.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/ub_constrain.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/ub_free.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of_rec.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/StdVectorBuilder.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorBuilder.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorBuilderHelper.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/ad_promotable.hpp | 146 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/bool_constant.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/child_type.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/conjunction.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_fvar.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_std_vector.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_vector.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/disjunction.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/include_summand.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/index_type.hpp | 18 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_constant.hpp | 21 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_eigen.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_fvar.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_var.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_var_or_arithmetic.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_vector.hpp | 77 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_vector_like.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/operands_and_partials.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/partials_return_type.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/partials_type.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/promote_args.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/require_generics.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/return_type.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_seq_view.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_type.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_type_pre.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/value_type.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_ccdf_log.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf_log.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lccdf.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lcdf.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_log.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_lpmf.hpp | 45 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_ccdf_log.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf_log.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lccdf.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lcdf.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_log.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lpmf.hpp | 140 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf.hpp | 64 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lccdf.hpp | 50 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lcdf.hpp | 50 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lpdf.hpp | 95 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lccdf.hpp | 53 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lcdf.hpp | 52 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lpdf.hpp | 71 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_rng.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_ccdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lccdf.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lcdf.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_log.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_log.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_lpmf.hpp | 51 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lpmf.hpp | 50 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lccdf.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lcdf.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_log.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lpdf.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_ccdf_log.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf_log.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lccdf.hpp | 37 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lcdf.hpp | 37 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_log.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lpdf.hpp | 74 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lccdf.hpp | 37 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lcdf.hpp | 37 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lpdf.hpp | 56 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_ccdf_log.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf_log.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lccdf.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lcdf.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_log.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lpdf.hpp | 53 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_rng.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_ccdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lccdf.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lcdf.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_log.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lpdf.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lccdf.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lcdf.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_log.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lpdf.hpp | 85 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf.hpp | 56 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lccdf.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lcdf.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lpdf.hpp | 69 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lccdf.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lcdf.hpp | 31 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_log.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lpdf.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_rng.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_log.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_lpmf.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_rng.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_ccdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_cdf.hpp | 53 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_cdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lccdf.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lcdf.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lpdf.hpp | 73 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf.hpp | 65 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lccdf.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lcdf.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_log.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lpdf.hpp | 86 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf.hpp | 51 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lccdf.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lcdf.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_log.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lpdf.hpp | 72 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_rng.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lccdf.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lcdf.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_log.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lpdf.hpp | 88 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf.hpp | 44 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lcdf.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_lpmf.hpp | 63 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lpmf.hpp | 67 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp | 45 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lcdf.hpp | 49 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lpmf.hpp | 93 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf.hpp | 55 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lccdf.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lcdf.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_log.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lpdf.hpp | 51 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_sufficient_log.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_sufficient_lpdf.hpp | 45 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lccdf.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lcdf.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_log.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lpdf.hpp | 81 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf.hpp | 66 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lccdf.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lcdf.hpp | 37 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_log.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lpdf.hpp | 68 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_rng.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_ccdf_log.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf_log.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lccdf.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lcdf.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_log.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_lpmf.hpp | 56 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lpmf.hpp | 46 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_ccdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lccdf.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lcdf.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lpdf.hpp | 45 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf.hpp | 59 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lccdf.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lcdf.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_log.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lpdf.hpp | 93 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf.hpp | 50 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lccdf.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lcdf.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lpdf.hpp | 56 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_rng.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/std_normal_log.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/std_normal_lpdf.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_ccdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf.hpp | 85 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf_log.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lccdf.hpp | 60 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lcdf.hpp | 64 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_log.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lpdf.hpp | 78 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lccdf.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lcdf.hpp | 34 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_log.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lpdf.hpp | 51 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_rng.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_log.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_lpdf.hpp | 60 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_rng.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_ccdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf.hpp | 51 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf_log.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lccdf.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lcdf.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_log.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lpdf.hpp | 91 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_rng.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_log.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_lpdf.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/fun/log_sum_exp.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/fun/sum.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/fun/to_var.hpp | 21 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/functor/coupled_ode_system.hpp | 509 - StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/functor/integrate_1d.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/autodiffstackstorage.hpp | 136 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/build_vari_array.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/chainable_alloc.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/chainablestack.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/empty_nested.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/gevv_vvv_vari.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/grad.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/init_chainablestack.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/matrix_vari.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/nested_size.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_addition.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_divide_equal.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_division.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_minus_equal.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_multiplication.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_multiply_equal.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_plus_equal.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_subtraction.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_unary_decrement.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_unary_increment.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_unary_negative.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_unary_plus.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/precomputed_gradients.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/print_stack.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/recover_memory.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/recover_memory_nested.hpp | 29 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/set_zero_all_adjoints.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/start_nested.hpp | 14 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/stored_gradient_vari.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/var.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/vari.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/vector_vari.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp | 185 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_alloc.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_factor.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/cholesky_decompose.hpp | 79 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/columns_dot_product.hpp | 18 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/columns_dot_self.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/cov_exp_quad.hpp | 43 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/crossprod.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/determinant.hpp | 40 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/divide.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/dot_product.hpp | 100 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/dot_self.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/gp_exp_quad_cov.hpp | 56 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp | 35 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/grad.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/initialize_variable.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/inverse.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant.hpp | 25 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant_ldlt.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant_spd.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_softmax.hpp | 62 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_sum_exp.hpp | 26 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/matrix_exp_multiply.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left.hpp | 225 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp | 133 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_spd.hpp | 182 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_tri.hpp | 354 - StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/multiply.hpp | 371 - StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/multiply_lower_tri_self_transpose.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/ordered_constrain.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/positive_ordered_constrain.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/quad_form.hpp | 23 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/quad_form_sym.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/rows_dot_product.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/scale_matrix_exp_multiply.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/sd.hpp | 48 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/simplex_constrain.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/softmax.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/squared_distance.hpp | 69 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/stan_print.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/sum.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/tcrossprod.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/to_var.hpp | 75 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_gen_inv_quad_form_ldlt.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_gen_quad_form.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp | 78 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_quad_form.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/typedefs.hpp | 27 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/unit_vector_constrain.hpp | 28 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/variance.hpp | 39 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/adj_jac_apply.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_fp.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_newton.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_powell.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_system.hpp | 33 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_integrator.hpp | 92 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_ode_data.hpp | 32 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_utils.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/gradient.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_forward_system.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_integrator.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_system.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_dae.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_bdf.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/jacobian.hpp | 21 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/kinsol_data.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/kinsol_solve.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/map_rect_concurrent.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/map_rect_reduce.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/meta/operands_and_partials.hpp | 30 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/vectorize/apply_scalar_unary.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/meta.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/Phi.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/Phi_approx.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/abs.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/acos.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/acosh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/as_bool.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/asin.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/asinh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/atan.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/atan2.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/atanh.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/bessel_first_kind.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/bessel_second_kind.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/beta.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/binary_log_loss.hpp | 8 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_fpclassify.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isfinite.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isnormal.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/calculate_chain.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/cbrt.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/ceil.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/cos.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/cosh.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/digamma.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/erf.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/erfc.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/exp.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/exp2.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/expm1.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fabs.hpp | 10 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/falling_factorial.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fdim.hpp | 16 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/floor.hpp | 5 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fma.hpp | 42 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fmax.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fmin.hpp | 20 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fmod.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_p.hpp | 13 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_q.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/grad_inc_beta.hpp | 9 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/hypot.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/ibeta.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/if_else.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/inc_beta.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/inv.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_Phi.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_cloglog.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_logit.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_sqrt.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_square.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/is_inf.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/is_nan.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/is_uninitialized.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/lbeta.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/ldexp.hpp |only StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/lgamma.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/lmgamma.hpp | 6 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log10.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_exp.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_inv_logit.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1p.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1p_exp.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log2.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_diff_exp.hpp | 24 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_falling_factorial.hpp | 15 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_inv_logit.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_inv_logit_diff.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_mix.hpp | 17 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_rising_factorial.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_sum_exp.hpp | 18 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/logit.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/modified_bessel_first_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/modified_bessel_second_kind.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/multiply_log.hpp | 22 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/owens_t.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/pow.hpp | 36 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/primitive_value.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/rising_factorial.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/round.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/sin.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/sinh.hpp | 2 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/sqrt.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/square.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/squared_distance.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/step.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/tan.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/tanh.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/tgamma.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/to_var.hpp | 19 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/trigamma.hpp | 3 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/trunc.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/value_of.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/value_of_rec.hpp | 1 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/meta/is_var.hpp | 12 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/meta/operands_and_partials.hpp | 4 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/meta/partials_type.hpp | 11 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/version.hpp | 7 StanHeaders-2.21.0-1/StanHeaders/man |only StanHeaders-2.21.0-1/StanHeaders/src/kinsol |only StanHeaders-2.21.0-1/StanHeaders/vignettes/stanmath.Rmd | 56 1748 files changed, 42447 insertions(+), 43142 deletions(-)
Title: Easily Install and Load the 'mlr3' Package Family
Description: The 'mlr3' package family is a set of packages for
machine-learning purposes built in a modular fashion. This wrapper
package is aimed to simplify the installation and loading of the core
'mlr3' packages. Get more information about the 'mlr3' project at
<https://mlr3book.mlr-org.com/>.
Author: Patrick Schratz [cre, aut] (<https://orcid.org/0000-0003-0748-6624>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>
Diff between mlr3verse versions 0.1.0 dated 2019-12-15 and 0.1.1 dated 2020-01-19
DESCRIPTION | 10 ++--- MD5 | 14 ++++---- NAMESPACE | 1 NEWS.md | 6 ++- R/mlr3verse_info.R | 7 ++-- R/zzz.R | 1 README.md | 81 +++++++++++++++++++++++++++-------------------- man/mlr3verse-package.Rd | 2 - 8 files changed, 72 insertions(+), 50 deletions(-)
Title: Formal Concept Analysis
Description: Provides tools to perform fuzzy formal concept analysis, presented in Wille (1982) <doi:10.1007/978-3-642-01815-2_23> and in Ganter and Obiedkov (2016) <doi:10.1007/978-3-662-49291-8>.
It provides functions to load and save a formal context, extract its concept lattice and implications.
In addition, one can use the implications to compute semantic closures of fuzzy sets and, thus, build recommendation systems.
Author: Domingo Lopez Rodriguez [aut, cre]
(<https://orcid.org/0000-0002-0172-1585>),
Angel Mora [aut],
Jesus Dominguez [aut],
Ana Villalon [aut],
Ian Johnson [ctb]
Maintainer: Domingo Lopez Rodriguez <dominlopez@uma.es>
Diff between fcaR versions 1.0.2 dated 2020-01-12 and 1.0.3 dated 2020-01-19
DESCRIPTION | 6 ++-- MD5 | 18 +++++++------- NEWS.md | 4 +++ README.md | 15 +++++++---- inst/doc/arules.html | 2 - inst/doc/implications.html | 4 +-- src/implication_tree.cpp | 2 - src/nextclosure.cpp | 36 ++++++++++++---------------- src/subsetting.cpp | 14 +++++------ src/vector_operations.cpp | 57 ++++++++++++++++++++++++++++++++------------- 10 files changed, 93 insertions(+), 65 deletions(-)
Title: A Framework for Coalescent Simulation
Description: Coalescent simulators can rapidly simulate biological sequences
evolving according to a given model of evolution.
You can use this package to specify such models, to conduct the simulations
and to calculate additional statistics from the results.
It relies on existing simulators for doing the simulation, and currently
supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites
mutation models by combining the simulators with the program 'seq-gen'.
Author: Paul Staab [aut, cre],
Dirk Metzler [aut, ths],
Jorge E. Amaya Romero [ctb]
Maintainer: Paul Staab <develop@paulstaab.de>
Diff between coala versions 0.5.3 dated 2019-07-09 and 0.6.0 dated 2020-01-19
coala-0.5.3/coala/R/import_popgenome.R |only coala-0.5.3/coala/inst/doc/coala-data-import.R |only coala-0.5.3/coala/man/as.segsites.GENOME.Rd |only coala-0.5.3/coala/man/as.segsites.Rd |only coala-0.5.3/coala/tests/testthat/test-import-popgenome.R |only coala-0.6.0/coala/DESCRIPTION | 16 - coala-0.6.0/coala/MD5 | 113 ++++++------- coala-0.6.0/coala/NAMESPACE | 5 coala-0.6.0/coala/NEWS.md | 9 + coala-0.6.0/coala/R/model.R | 1 coala-0.6.0/coala/R/model_build.R | 2 coala-0.6.0/coala/R/segsites.R | 32 --- coala-0.6.0/coala/R/sumstat.R | 9 - coala-0.6.0/coala/build/vignette.rds |binary coala-0.6.0/coala/inst/doc/coala-abc.R | 10 - coala-0.6.0/coala/inst/doc/coala-abc.html | 13 - coala-0.6.0/coala/inst/doc/coala-data-import.Rmd | 64 ------- coala-0.6.0/coala/inst/doc/coala-data-import.html | 126 --------------- coala-0.6.0/coala/inst/doc/coala-examples.R | 10 - coala-0.6.0/coala/inst/doc/coala-examples.html | 19 +- coala-0.6.0/coala/inst/doc/coala-extend.R | 4 coala-0.6.0/coala/inst/doc/coala-extend.html | 11 - coala-0.6.0/coala/inst/doc/coala-install.R | 6 coala-0.6.0/coala/inst/doc/coala-install.html | 13 - coala-0.6.0/coala/inst/doc/coala-intro.R | 36 ++-- coala-0.6.0/coala/inst/doc/coala-intro.html | 30 +-- coala-0.6.0/coala/man/calc_sumstats_from_data.Rd | 17 +- coala-0.6.0/coala/man/coal_model.Rd | 4 coala-0.6.0/coala/man/feat_growth.Rd | 21 +- coala-0.6.0/coala/man/feat_ignore_singletons.Rd | 18 +- coala-0.6.0/coala/man/feat_migration.Rd | 28 ++- coala-0.6.0/coala/man/feat_mutation.Rd | 31 ++- coala-0.6.0/coala/man/feat_outgroup.Rd | 19 +- coala-0.6.0/coala/man/feat_pop_merge.Rd | 18 +- coala-0.6.0/coala/man/feat_recombination.Rd | 18 +- coala-0.6.0/coala/man/feat_selection.Rd | 36 ++-- coala-0.6.0/coala/man/feat_size_change.Rd | 20 +- coala-0.6.0/coala/man/feat_unphased.Rd | 18 +- coala-0.6.0/coala/man/get_features.Rd | 3 coala-0.6.0/coala/man/locus_trio.Rd | 7 coala-0.6.0/coala/man/segsites.Rd | 3 coala-0.6.0/coala/man/simulate.coalmodel.Rd | 3 coala-0.6.0/coala/man/simulator_ms.Rd | 7 coala-0.6.0/coala/man/simulator_msms.Rd | 10 - coala-0.6.0/coala/man/simulator_scrm.Rd | 7 coala-0.6.0/coala/man/simulator_seqgen.Rd | 6 coala-0.6.0/coala/man/sumstat_class.Rd | 118 +++++++++++++- coala-0.6.0/coala/man/sumstat_dna.Rd | 22 +- coala-0.6.0/coala/man/sumstat_file.Rd | 22 +- coala-0.6.0/coala/man/sumstat_four_gamete.Rd | 28 ++- coala-0.6.0/coala/man/sumstat_ihh.Rd | 31 ++- coala-0.6.0/coala/man/sumstat_jsfs.Rd | 30 ++- coala-0.6.0/coala/man/sumstat_mcmf.Rd | 31 ++- coala-0.6.0/coala/man/sumstat_nucleotide_div.Rd | 26 +-- coala-0.6.0/coala/man/sumstat_omega.Rd | 32 ++- coala-0.6.0/coala/man/sumstat_seg_sites.Rd | 21 +- coala-0.6.0/coala/man/sumstat_sfs.Rd | 25 +- coala-0.6.0/coala/man/sumstat_tajimas_d.Rd | 28 ++- coala-0.6.0/coala/man/sumstat_trees.Rd | 22 +- coala-0.6.0/coala/vignettes/coala-data-import.Rmd | 64 ------- 60 files changed, 645 insertions(+), 678 deletions(-)
Title: Variable Importance Plots
Description: A general framework for constructing variable importance plots from
various types of machine learning models in R. Aside from some standard model-
specific variable importance measures, this package also provides model-
agnostic approaches that can be applied to any supervised learning algorithm.
These include 1) an efficient permutation-based variable importance measure,
2) variable importance based on Shapley values (Strumbelj and Kononenko,
2014) <doi:10.1007/s10115-013-0679-x>, and 3) the variance-based
approach described in Greenwell et al. (2018) <arXiv:1805.04755>. A
variance-based method for quantifying the relative strength of interaction
effects is also included (see the previous reference for details).
Author: Brandon Greenwell [aut, cre] (<https://orcid.org/0000-0002-8120-0084>),
Brad Boehmke [aut] (<https://orcid.org/0000-0002-3611-8516>),
Bernie Gray [aut] (<https://orcid.org/0000-0001-9190-6032>)
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between vip versions 0.1.3 dated 2019-07-03 and 0.2.0 dated 2020-01-19
vip-0.1.3/vip/R/get_predictions.R |only vip-0.1.3/vip/R/vi_ice.R |only vip-0.1.3/vip/R/vi_pdp.R |only vip-0.1.3/vip/man/vi_ice.Rd |only vip-0.1.3/vip/man/vi_pdp.Rd |only vip-0.2.0/vip/DESCRIPTION | 36 ++-- vip-0.2.0/vip/MD5 | 86 ++++++--- vip-0.2.0/vip/NAMESPACE | 25 ++ vip-0.2.0/vip/NEWS.md | 66 +++++++ vip-0.2.0/vip/R/add_sparklines.R | 18 +- vip-0.2.0/vip/R/gen_friedman.R |only vip-0.2.0/vip/R/get_feature_names.R | 202 ++++++++++++++++++++--- vip-0.2.0/vip/R/get_training_data.R | 164 +++++++++++++++--- vip-0.2.0/vip/R/metrics.R | 245 ++++++++++++++++++--------- vip-0.2.0/vip/R/utils.R | 8 vip-0.2.0/vip/R/vi.R | 96 +++++++--- vip-0.2.0/vip/R/vi_firm.R |only vip-0.2.0/vip/R/vi_model.R | 138 +++++++++++++-- vip-0.2.0/vip/R/vi_permute.R | 140 ++++++++------- vip-0.2.0/vip/R/vi_shap.R |only vip-0.2.0/vip/R/vint.R | 24 +- vip-0.2.0/vip/R/vip.R | 289 ++++++++++++++++++++++++--------- vip-0.2.0/vip/README.md | 72 +++++++- vip-0.2.0/vip/inst |only vip-0.2.0/vip/man/add_sparklines.Rd | 10 - vip-0.2.0/vip/man/bin.Rd |only vip-0.2.0/vip/man/deprecated.Rd |only vip-0.2.0/vip/man/figures/one-pkg.png |only vip-0.2.0/vip/man/gen_friedman.Rd |only vip-0.2.0/vip/man/get_feature_names.Rd | 2 vip-0.2.0/vip/man/get_formula.Rd |only vip-0.2.0/vip/man/metrics.Rd |only vip-0.2.0/vip/man/vi.Rd | 63 +++++-- vip-0.2.0/vip/man/vi_firm.Rd |only vip-0.2.0/vip/man/vi_model.Rd | 54 ++++-- vip-0.2.0/vip/man/vi_permute.Rd | 55 +++--- vip-0.2.0/vip/man/vi_shap.Rd |only vip-0.2.0/vip/man/vint.Rd | 34 ++- vip-0.2.0/vip/man/vip.Rd | 144 ++++++++++++---- vip-0.2.0/vip/tests |only vip-0.2.0/vip/tools/one-pkg.png |only 41 files changed, 1472 insertions(+), 499 deletions(-)
Title: Radiation and Photovoltaic Systems
Description: Calculation methods of solar radiation and performance of photovoltaic systems from daily and intradaily irradiation data sources.
Author: Oscar Perpiñán Lamigueiro [cre, aut]
(<https://orcid.org/0000-0002-4134-7196>)
Maintainer: Oscar Perpiñán Lamigueiro <oscar.perpinan@upm.es>
Diff between solaR versions 0.44 dated 2016-04-16 and 0.45 dated 2020-01-19
DESCRIPTION | 13 - MD5 | 74 +++---- R/calcGef.R | 4 R/fProd.R | 421 ++++++++++++++++++++++++++----------------- R/markovG0.R | 2 README.md | 2 man/HQCurve.Rd | 4 man/NmgSFB.Rd | 18 - man/calcG0.Rd | 98 +++++----- man/calcGef.Rd | 80 ++++---- man/calcShd.Rd | 32 +-- man/calcSol.Rd | 16 - man/compare-methods.Rd | 16 - man/compareLosses-methods.Rd | 14 - man/corrFdKt.Rd | 24 +- man/defunct.Rd | 2 man/fBTd.Rd | 20 +- man/fCompD.Rd | 45 ++-- man/fCompI.Rd | 32 +-- man/fInclin.Rd | 9 man/fProd.Rd | 12 - man/fPump.Rd | 38 +-- man/fSolD.Rd | 50 ++--- man/fSolI.Rd | 36 +-- man/fSombra.Rd | 43 ++-- man/fTheta.Rd | 20 +- man/local2UTC.Rd | 24 +- man/mergesolaR-methods.Rd | 14 - man/optimShd.Rd | 135 ++++++------- man/prodGCPV.Rd | 197 ++++++++++++-------- man/prodPVPS.Rd | 16 - man/readBD.Rd | 34 +-- man/readG0dm.Rd | 13 - man/sample2Diff.Rd | 4 man/solaR.theme.Rd | 10 - man/window-methods.Rd | 4 man/writeSolar.Rd | 48 ++-- man/xyplot-methods.Rd | 6 38 files changed, 892 insertions(+), 738 deletions(-)
Title: Small Molecule Octet/BLI Kinetics Experiment
Description: Bio-Layer Interferometry (BLI) is a technology to determine the binding kinetics between biomolecules. BLI signals are small and noisy when small molecules are investigated as ligands (analytes). We develop this package to process and analyze the BLI data acquired on Octet Red96 from Fortebio more accurately.
Sun Q., Li X., et al (2020) <doi:10.1038/s41467-019-14238-3>.
In this new version, we organize the BLI experiment data and analysis methods into a S4 class with self-explaining structure.
Author: Qingan Sun, Xiaojun Li, James C Sacchettini
Maintainer: Qingan Sun <quinsun@gmail.com>
Diff between smoke versions 1.0.1 dated 2019-12-16 and 2.0.0 dated 2020-01-19
smoke-1.0.1/smoke/R/smoke.R |only smoke-1.0.1/smoke/data/data.raw.RData |only smoke-1.0.1/smoke/man/data.raw.Rd |only smoke-1.0.1/smoke/man/doubleRef.Rd |only smoke-1.0.1/smoke/man/estKinetics.Rd |only smoke-1.0.1/smoke/man/readTraces.Rd |only smoke-1.0.1/smoke/man/scaLoad.Rd |only smoke-2.0.0/smoke/DESCRIPTION | 18 +++--- smoke-2.0.0/smoke/MD5 | 73 ++++++++++++++++++++----- smoke-2.0.0/smoke/NAMESPACE | 31 +++++++++- smoke-2.0.0/smoke/R/bliClass.R |only smoke-2.0.0/smoke/R/bliMethod.R |only smoke-2.0.0/smoke/R/bliMethodAlignLoad.R |only smoke-2.0.0/smoke/R/bliMethodBaseline.R |only smoke-2.0.0/smoke/R/bliMethodDoubleBlank.R |only smoke-2.0.0/smoke/R/bliMethodEstimate.R |only smoke-2.0.0/smoke/R/bliMethodFitKinetics.R |only smoke-2.0.0/smoke/build/partial.rdb |binary smoke-2.0.0/smoke/data/bli.RData |only smoke-2.0.0/smoke/data/datalist | 2 smoke-2.0.0/smoke/inst |only smoke-2.0.0/smoke/man/Bli-class.Rd |only smoke-2.0.0/smoke/man/Bli.Rd |only smoke-2.0.0/smoke/man/alignLoad-methods.Rd |only smoke-2.0.0/smoke/man/alignLoad.Rd |only smoke-2.0.0/smoke/man/baseline-methods.Rd |only smoke-2.0.0/smoke/man/baseline.Rd |only smoke-2.0.0/smoke/man/bliData.Rd |only smoke-2.0.0/smoke/man/doubleBlank-methods.Rd |only smoke-2.0.0/smoke/man/doubleBlank.Rd |only smoke-2.0.0/smoke/man/estimate-methods.Rd |only smoke-2.0.0/smoke/man/estimate.Rd |only smoke-2.0.0/smoke/man/fitKinetics-methods.Rd |only smoke-2.0.0/smoke/man/fitKinetics.Rd | 65 +++++++--------------- smoke-2.0.0/smoke/man/initialize-methods.Rd |only smoke-2.0.0/smoke/man/kOff0-methods.Rd |only smoke-2.0.0/smoke/man/kOff0.Rd |only smoke-2.0.0/smoke/man/kOff0_--methods.Rd |only smoke-2.0.0/smoke/man/kOff0_-.Rd |only smoke-2.0.0/smoke/man/kOn0-methods.Rd |only smoke-2.0.0/smoke/man/kOn0.Rd |only smoke-2.0.0/smoke/man/kOn0_--methods.Rd |only smoke-2.0.0/smoke/man/kOn0_-.Rd |only smoke-2.0.0/smoke/man/kinetics-methods.Rd |only smoke-2.0.0/smoke/man/kinetics.Rd |only smoke-2.0.0/smoke/man/ligand-methods.Rd |only smoke-2.0.0/smoke/man/ligand.Rd |only smoke-2.0.0/smoke/man/ligand_--methods.Rd |only smoke-2.0.0/smoke/man/ligand_-.Rd |only smoke-2.0.0/smoke/man/nls-class.Rd |only smoke-2.0.0/smoke/man/plotKinetics-methods.Rd |only smoke-2.0.0/smoke/man/plotKinetics.Rd |only smoke-2.0.0/smoke/man/plotResiduals-methods.Rd |only smoke-2.0.0/smoke/man/plotResiduals.Rd |only smoke-2.0.0/smoke/man/plotTraces-methods.Rd |only smoke-2.0.0/smoke/man/plotTraces.Rd |only smoke-2.0.0/smoke/man/show-methods.Rd |only smoke-2.0.0/smoke/man/smoke-package.Rd | 19 ++++-- smoke-2.0.0/smoke/man/status-methods.Rd |only smoke-2.0.0/smoke/man/status.Rd |only smoke-2.0.0/smoke/man/tExp-methods.Rd |only smoke-2.0.0/smoke/man/tExp.Rd |only smoke-2.0.0/smoke/man/tExp_--methods.Rd |only smoke-2.0.0/smoke/man/tExp_-.Rd |only smoke-2.0.0/smoke/man/traces-methods.Rd |only smoke-2.0.0/smoke/man/traces.Rd |only smoke-2.0.0/smoke/man/traces_--methods.Rd |only smoke-2.0.0/smoke/man/traces_-.Rd |only 68 files changed, 134 insertions(+), 74 deletions(-)
Title: Comprehensive and Easy to Use Quality Control of GWAS Results
Description: When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.
Author: Alireza Ani [aut, cre],
Peter J. van der Most [aut],
Ahmad Vaez [aut],
Ilja M. Nolte [aut]
Maintainer: Alireza Ani <a.ani@umcg.nl>
Diff between GWASinspector versions 1.3.4 dated 2019-12-01 and 1.4.2 dated 2020-01-19
GWASinspector-1.3.4/GWASinspector/R/exampleConfig.R |only GWASinspector-1.3.4/GWASinspector/inst/extdata/sample.txt.gz |only GWASinspector-1.3.4/GWASinspector/man/man.plot.Rd |only GWASinspector-1.3.4/GWASinspector/man/sample.inspector.Rd |only GWASinspector-1.4.2/GWASinspector/ChangeLog | 8 GWASinspector-1.4.2/GWASinspector/DESCRIPTION | 8 GWASinspector-1.4.2/GWASinspector/MD5 | 107 ++- GWASinspector-1.4.2/GWASinspector/NAMESPACE | 4 GWASinspector-1.4.2/GWASinspector/NEWS | 7 GWASinspector-1.4.2/GWASinspector/R/GWASinspector.R | 4 GWASinspector-1.4.2/GWASinspector/R/aaa.R | 2 GWASinspector-1.4.2/GWASinspector/R/alleleMatch.R | 269 +--------- GWASinspector-1.4.2/GWASinspector/R/altReferenceRelatedFucntions.R | 4 GWASinspector-1.4.2/GWASinspector/R/calculationFunctions.R | 12 GWASinspector-1.4.2/GWASinspector/R/checkConfigFile.R | 24 GWASinspector-1.4.2/GWASinspector/R/class_definition.R | 25 GWASinspector-1.4.2/GWASinspector/R/compare_GWASs.R | 4 GWASinspector-1.4.2/GWASinspector/R/demoConfig.R |only GWASinspector-1.4.2/GWASinspector/R/excelReportFunctions.R | 149 +++-- GWASinspector-1.4.2/GWASinspector/R/fileFunctions.R | 2 GWASinspector-1.4.2/GWASinspector/R/headerRelatedFunctions.R | 5 GWASinspector-1.4.2/GWASinspector/R/histPlotFunction.R | 1 GWASinspector-1.4.2/GWASinspector/R/loggerFunctions.R | 39 - GWASinspector-1.4.2/GWASinspector/R/manh_plot.R | 157 +++++ GWASinspector-1.4.2/GWASinspector/R/manhattanPlotFunction.R | 176 +++++- GWASinspector-1.4.2/GWASinspector/R/multiStudyFunctions.R | 4 GWASinspector-1.4.2/GWASinspector/R/processColumns.R | 24 GWASinspector-1.4.2/GWASinspector/R/processInputFile.R | 60 +- GWASinspector-1.4.2/GWASinspector/R/rSQLiteFunctions.R | 18 GWASinspector-1.4.2/GWASinspector/R/reportRelatedFunctions.R | 147 ++--- GWASinspector-1.4.2/GWASinspector/R/result_inspector.R | 2 GWASinspector-1.4.2/GWASinspector/R/run_inspector.R | 11 GWASinspector-1.4.2/GWASinspector/R/sample_inspector.R | 4 GWASinspector-1.4.2/GWASinspector/R/saveFilesFunctions.R | 31 - GWASinspector-1.4.2/GWASinspector/R/setup_inspector.R | 5 GWASinspector-1.4.2/GWASinspector/R/studyFunctions.R | 51 + GWASinspector-1.4.2/GWASinspector/R/suppFunctions.R | 27 - GWASinspector-1.4.2/GWASinspector/R/terminationFunctions.R | 16 GWASinspector-1.4.2/GWASinspector/R/uploadInputFile.R | 6 GWASinspector-1.4.2/GWASinspector/R/validate.R | 2 GWASinspector-1.4.2/GWASinspector/R/variantMatching.R |only GWASinspector-1.4.2/GWASinspector/R/variantMatchingFunctions.R | 51 + GWASinspector-1.4.2/GWASinspector/R/variantModifierFunctions.R | 17 GWASinspector-1.4.2/GWASinspector/R/zzz.R | 5 GWASinspector-1.4.2/GWASinspector/inst/doc/GWASinspector.R | 2 GWASinspector-1.4.2/GWASinspector/inst/doc/GWASinspector.Rmd | 2 GWASinspector-1.4.2/GWASinspector/inst/doc/GWASinspector.html | 6 GWASinspector-1.4.2/GWASinspector/inst/extdata/alt_headers.txt | 6 GWASinspector-1.4.2/GWASinspector/inst/extdata/config.ini | 20 GWASinspector-1.4.2/GWASinspector/inst/extdata/demo.txt.gz |only GWASinspector-1.4.2/GWASinspector/inst/rmd/mainReport.rmd | 39 - GWASinspector-1.4.2/GWASinspector/inst/rmd/mainReport_extra.rmd | 63 -- GWASinspector-1.4.2/GWASinspector/inst/rmd/multiFileReport.rmd | 9 GWASinspector-1.4.2/GWASinspector/inst/rmd/multiFileReport_alone_extra.rmd | 10 GWASinspector-1.4.2/GWASinspector/inst/rmd/multiFileReport_extra.rmd | 9 GWASinspector-1.4.2/GWASinspector/man/GWASinspector.Rd | 4 GWASinspector-1.4.2/GWASinspector/man/demo.inspector.Rd |only GWASinspector-1.4.2/GWASinspector/man/manhattan.plot.Rd |only GWASinspector-1.4.2/GWASinspector/vignettes/GWASinspector.Rmd | 2 59 files changed, 940 insertions(+), 720 deletions(-)
Title: Augmented and Penalized Minimization Method L0
Description: Fit linear, logistic and Cox models regularized with L0, lasso (L1), elastic-net (L1 and L2), or net (L1 and Laplacian) penalty, and their adaptive forms, such as adaptive lasso / elastic-net and net adjusting for signs of linked coefficients. It solves L0 penalty problem by simultaneously selecting regularization parameters and performing hard-thresholding or selecting number of non-zeros. This augmented and penalized minimization method provides an approximation solution to the L0 penalty problem, but runs as fast as L1 regularization problem. The package uses one-step coordinate descent algorithm and runs extremely fast by taking into account the sparsity structure of coefficients. It could deal with very high dimensional data and has superior selection performance.
Author: Xiang Li, Shanghong Xie, Donglin Zeng and Yuanjia Wang
Maintainer: Xiang Li <spiritcoke@gmail.com>
Diff between APML0 versions 0.9 dated 2018-04-23 and 0.10 dated 2020-01-19
DESCRIPTION | 10 MD5 | 26 R/APML0.R | 10 R/RcppExports.R | 52 + R/net_cox.R | 391 +++++++----- R/net_lm.R | 429 ++++++++----- R/net_logit.R | 388 ++++++------ inst/include/APML0.h | 18 inst/include/APML0_RcppExports.h | 1003 +++++++++++++++++-------------- man/APML0-package.Rd | 22 man/APML0.Rd | 78 +- man/print.APML0.Rd | 2 src/APML0.cpp | 1225 +++++++++++++++++++++++---------------- src/RcppExports.cpp | 398 ++++++++++-- 14 files changed, 2465 insertions(+), 1587 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-08 0.1.0
More information about opentripplanner at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-09 1.0.1
2018-05-24 1.0.0
2018-02-13 0.3.1
2017-12-22 0.3.0
2017-10-31 0.2.1
2017-10-12 0.2.0
2017-08-20 0.1.1
2017-08-15 0.1.0
Title: Stan Models for the Paired Comparison Factor Model
Description: Provides convenience functions and pre-programmed Stan models
related to the paired comparison factor model. Its purpose is to make fitting
paired comparison data using Stan easy.
Author: Joshua N. Pritikin [aut, cre] (<https://orcid.org/0000-0002-9862-5484>),
Daniel C. Furr [ctb],
Trustees of Columbia University [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between pcFactorStan versions 1.2.0 dated 2019-10-11 and 1.3.0 dated 2020-01-19
DESCRIPTION | 8 - MD5 | 48 +++---- inst/doc/manual.R | 8 - inst/doc/manual.Rmd | 8 - inst/doc/manual.html | 246 ++++++++++++++++++--------------------- man/calibrateItems.Rd | 10 + man/generateCovItems.Rd | 10 - man/generateFactorItems.Rd | 19 ++- man/generateItem.Rd | 7 - man/generateSingleFactorItems.Rd | 10 - man/parDistributionCustom.Rd | 14 +- man/parInterval.Rd | 8 - man/prepCleanData.Rd | 7 - man/prepData.Rd | 7 - man/prepFactorModel.Rd | 10 - man/prepSingleFactorModel.Rd | 9 - man/responseCurve.Rd | 17 ++ man/roundRobinGraph.Rd | 3 man/twoLevelGraph.Rd | 3 src/stan_files/factor.stan | 4 src/stan_files/factor1.stan | 4 src/stan_files/factor1_ll.stan | 4 src/stan_files/factor_ll.stan | 4 tools/genStan | 4 vignettes/manual.Rmd | 8 - 25 files changed, 256 insertions(+), 224 deletions(-)
Title: Dynamic Generation and Quality Checks of Formula Objects
Description: Many statistical models and analyses in R are implemented through formula objects. The formulaic package creates a unified approach for programmatically and dynamically generating formula objects. Users may specify the outcome and inputs of a model directly, search for variables to include based upon naming patterns, incorporate interactions, and identify variables to exclude. A wide range of quality checks are implemented to identify issues such as misspecified variables, duplication, a lack of contrast in the inputs, and a large number of levels in categorical data. Variables that do not meet these quality checks can be automatically excluded from the model. These issues are documented and reported in a manner that provides greater accountability and useful information to guide an investigation of the data.
Author: David Shilane [aut],
Caffrey Lee [aut, ctb],
Zichen Huang [aut, ctb],
Anderson Nelson [aut, ctb, cre]
Maintainer: Anderson Nelson <an2908@columbia.edu>
Diff between formulaic versions 0.0.5 dated 2019-12-16 and 0.0.6 dated 2020-01-19
DESCRIPTION | 18 +++---- MD5 | 19 ++++---- NEWS.md | 4 + R/create.formula.R | 5 +- build/vignette.rds |binary inst/doc/Introduction-to-formulaic.R | 18 +++---- inst/doc/Introduction-to-formulaic.Rmd | 18 +++---- inst/doc/Introduction-to-formulaic.html | 76 ++++++++++++++++---------------- tests/testthat/test-create_formula.R | 65 ++++++++++++++++++++++++--- tests/testthat/test-reduce-formula.R |only vignettes/Introduction-to-formulaic.Rmd | 18 +++---- 11 files changed, 152 insertions(+), 89 deletions(-)
Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities,
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 1.2.2 dated 2019-11-03 and 1.2.3 dated 2020-01-19
DESCRIPTION | 14 ++--- MD5 | 92 +++++++++++++++++----------------- NEWS.md | 4 + R/GainCurve.R | 4 - R/run_WVPlots_tests.R | 3 - inst/doc/WVPlots_concept.R | 16 ++--- inst/doc/WVPlots_concept.html | 9 +-- inst/doc/WVPlots_examples.R | 68 ++++++++++++------------- inst/doc/WVPlots_examples.html | 13 ++-- man/BinaryYScatterPlot.Rd | 13 ++++ man/ClevelandDotPlot.Rd | 12 +++- man/ConditionalSmoothedScatterPlot.Rd | 16 ++++- man/DiscreteDistribution.Rd | 3 - man/DoubleDensityPlot.Rd | 11 +++- man/DoubleHistogramPlot.Rd | 11 +++- man/GainCurvePlot.Rd | 16 ++++- man/GainCurvePlotC.Rd | 16 ++++- man/GainCurvePlotWithNotation.Rd | 23 ++++++-- man/HexBinPlot.Rd | 14 ++++- man/LiftCurvePlot.Rd | 15 ++++- man/LogLogPlot.Rd | 15 ++++- man/PRPlot.Rd | 3 - man/PRTPlot.Rd | 14 ++++- man/PairPlot.Rd | 12 +++- man/PlotDistCountBinomial.Rd | 14 ++++- man/PlotDistCountNormal.Rd | 14 ++++- man/PlotDistDensityBeta.Rd | 12 +++- man/PlotDistDensityNormal.Rd | 14 ++++- man/PlotDistHistBeta.Rd | 14 ++++- man/ROCPlot.Rd | 19 +++++-- man/ROCPlotPair.Rd | 17 +++++- man/ROCPlotPair2.Rd | 23 +++++++- man/ScatterBoxPlot.Rd | 13 ++++ man/ScatterBoxPlotH.Rd | 13 ++++ man/ScatterHist.Rd | 27 +++++++-- man/ScatterHistC.Rd | 14 ++++- man/ScatterHistN.Rd | 15 ++++- man/ShadedDensity.Rd | 13 ++++ man/ShadedDensityCenter.Rd | 12 +++- man/ShadowHist.Rd | 16 ++++- man/ShadowPlot.Rd | 13 ++++ man/WVPlots.Rd | 1 man/plot_Keras_fit_trajectory.Rd | 23 ++++++-- man/plot_fit_trajectory.Rd | 20 +++++-- man/plotlyROC.Rd | 11 +++- man/reexports.Rd | 2 man/run_WVPlots_tests.Rd | 20 ++++--- 47 files changed, 536 insertions(+), 221 deletions(-)
Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <http://curl.haxx.se/libcurl/>
Provides functions to allow one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: CRAN Team [ctb, cre] (de facto maintainer since 2013),
Duncan Temple Lang [aut] (<https://orcid.org/0000-0003-0159-1546>)
Maintainer: CRAN Team <CRAN@r-project.org>
Diff between RCurl versions 1.95-4.13 dated 2020-01-16 and 1.98-1.1 dated 2020-01-19
DESCRIPTION | 25 ++++++++++----- MD5 | 58 ++++++++++++++++++------------------ R/aclassesEnums.R | 18 +++++------ R/curl.S | 68 +++++++++++++++++++++---------------------- R/mime.R | 2 - R/urlExists.R | 10 +++++- R/xbits.R | 10 +++--- inst/doc/cookies.xml | 3 + man/MultiCURLHandle-class.Rd | 2 - man/basicHeaderGatherer.Rd | 2 - man/basicTextGatherer.Rd | 6 +-- man/binaryBuffer.Rd | 7 ++-- man/chunkToLineReader.Rd | 2 - man/curlEscape.Rd | 2 - man/curlGlobalInit.Rd | 2 - man/curlOptions.Rd | 2 - man/curlPerform.Rd | 4 +- man/curlSetOpt.Rd | 2 - man/curlVersion.Rd | 2 - man/dynCurlReader.Rd | 5 +-- man/getBinaryURL.Rd | 25 +++++++++------ man/getBitIndicators.Rd | 2 - man/getCurlHandle.Rd | 2 - man/getCurlInfo.Rd | 4 +- man/getURIAsynchronous.Rd | 2 - man/getURL.Rd | 7 +--- man/merge.list.Rd | 2 - man/scp.Rd | 6 +-- man/url.exists.Rd | 7 ++-- src/curl.c | 2 - 30 files changed, 155 insertions(+), 136 deletions(-)
Title: Bayesian Estimation of Generalized Graded Unfolding Model
Parameters
Description: Provides a Metropolis-coupled Markov chain Monte Carlo sampler,
post-processing and parameter estimation functions, and plotting utilities
for the generalized graded unfolding model of Roberts, Donoghue, and
Laughlin (2000) <doi:10.1177/01466216000241001>.
Author: JBrandon Duck-Mayr [aut, cre] (<https://orcid.org/0000-0002-2231-1294>),
Jacob Montgomery [aut],
Patrick Silva [ctb],
Luwei Ying [ctb]
Maintainer: JBrandon Duck-Mayr <j.duckmayr@gmail.com>
Diff between bggum versions 1.0.1 dated 2020-01-09 and 1.0.2 dated 2020-01-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/ggumMCMC.Rd | 2 +- tests/testthat/test_ggum_simulation.R | 6 ++---- 4 files changed, 10 insertions(+), 12 deletions(-)
Title: Reads Fixed-Width ASCII Data Files (.txt or .dat) that Have
Accompanying Setup Files (.sps or .sas)
Description: Lets you open a fixed-width ASCII file (.txt or
.dat) that has an accompanying setup file (.sps or .sas). These file
combinations are sometimes referred to as .txt+.sps, .txt+.sas,
.dat+.sps, or .dat+.sas. This will only run in a txt-sps or txt-sas
pair in which the setup file contains instructions to open that text
file. It will NOT open other text files, .sav, .sas, or .por data
files. Fixed-width ASCII files with setup files are common in older
(pre-2000) government data.
Author: Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>)
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between asciiSetupReader versions 2.2.0 dated 2019-10-08 and 2.3.0 dated 2020-01-19
DESCRIPTION | 12 MD5 | 62 +- NAMESPACE | 2 NEWS.md | 6 R/helper.R | 9 R/parse_setup.R | 13 R/read_ascii_setup_addin.R | 9 R/spss.R | 1 R/utils.R | 10 build/vignette.rds |binary inst/doc/Introduction_to_asciiSetupReader.R | 12 inst/doc/Introduction_to_asciiSetupReader.html | 125 +++-- inst/doc/making-an-sps-file.R | 12 inst/doc/making-an-sps-file.html | 117 +++-- inst/doc/parsing-an-sps-or-sas-file.R | 12 inst/doc/parsing-an-sps-or-sas-file.html | 209 ++++----- inst/testdata/monitoring_the_future_1979_sps.zip |only inst/testdata/monitoring_the_future_1989_sps.zip |only inst/testdata/monitoring_the_future_1990_sps.zip |only inst/testdata/monitoring_the_future_1991_sps.zip |only inst/testdata/monitoring_the_future_1992_sps.zip |only inst/testdata/monitoring_the_future_1993_sps.zip |only inst/testdata/monitoring_the_future_1999_sps.zip |only inst/testdata/monitoring_the_future_2002_sps.zip |only inst/testdata/monitoring_the_future_2003_sps.zip |only inst/testdata/monitoring_the_future_2004_sps.zip |only man/make_sps_setup.Rd | 126 ++--- man/parse_setup.Rd | 80 +-- man/read_ascii_setup.Rd | 139 +++--- man/read_ascii_setup_addin.Rd | 36 - man/sas_ascii_reader.Rd | 155 +++--- man/spss_ascii_reader.Rd | 163 +++---- tests/testthat/setup.R | 58 ++ tests/testthat/test-parse-value-labels-sps.R | 526 +++++++++++++++++++++++ tests/testthat/test-parser-missing-sps.R | 233 ++++++++++ tests/testthat/test-parser-sps.R | 425 +++++++++++++++++- tests/testthat/test-silent.R | 12 37 files changed, 1939 insertions(+), 625 deletions(-)
More information about asciiSetupReader at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-09 1.4.1.0
2018-04-23 1.4.0.0
2018-02-05 1.2.3.0
2018-01-16 1.2.2.0
2018-01-05 1.2.1.0
2018-01-04 1.2.0.0
2017-12-19 1.0.0.0