Sun, 19 Jan 2020

Package swissdd updated to version 1.0.2 with previous version 1.0.1 dated 2019-08-30

Title: Get Swiss Federal and Cantonal Vote Results from Opendata.swiss
Description: Builds upon the real time data service as well as the archive for national votes <https://opendata.swiss/api/3/action/package_show?id=echtzeitdaten-am-abstimmungstag-zu-eidgenoessischen-abstimmungsvorlagen> and cantonal votes <https://opendata.swiss/api/3/action/package_show?id=echtzeitdaten-am-abstimmungstag-zu-kantonalen-abstimmungsvorlagen>. It brings the results of Swiss popular votes, aggregated at the geographical level of choice, into R. Additionally, it allows to retrieve data from the Swissvotes-Database, one of the most comprehensive data platforms on Swiss referendums and initiatives <https://swissvotes.ch/page/dataset/swissvotes_dataset.csv>.
Author: Thomas Lo Russo [cre, aut], Thomas Willi [aut]
Maintainer: Thomas Lo Russo <th.lorusso@gmail.com>

Diff between swissdd versions 1.0.1 dated 2019-08-30 and 1.0.2 dated 2020-01-19

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Package rel updated to version 1.4.0 with previous version 1.3.1 dated 2017-05-12

Title: Reliability Coefficients
Description: Derives point estimates with confidence intervals for Bennett et als S, Cohen's kappa, Conger's kappa, Fleiss' kappa, Gwet's AC, intraclass correlation coefficients, Krippendorff's alpha, Scott's pi, the standard error of measurement, and weighted kappa.
Author: Riccardo LoMartire
Maintainer: Riccardo LoMartire <lomartire@kth.se>

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Package ballr updated to version 0.2.6 with previous version 0.2.5 dated 2020-01-10

Title: Access to Current and Historical Basketball Data
Description: Provides simple functions for accessing data/tables on <http://www.basketball-reference.com>.
Author: Ryan Elmore [cre, aut], Peter DeWitt [ctb]
Maintainer: Ryan Elmore <rtelmore@gmail.com>

Diff between ballr versions 0.2.5 dated 2020-01-10 and 0.2.6 dated 2020-01-19

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Package RCzechia updated to version 1.4.5 with previous version 1.4.3 dated 2019-10-27

Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>

Diff between RCzechia versions 1.4.3 dated 2019-10-27 and 1.4.5 dated 2020-01-19

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New package gratia with initial version 0.3.0
Package: gratia
Version: 0.3.0
Date: 2020-01-16
Title: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs Fitted Using 'mgcv'
Authors@R: c(person(given = "Gavin L.", family = "Simpson", email = "ucfagls@gmail.com", role = c("aut","cre"), comment = c(ORCID = "0000-0002-9084-8413")), person(given = "Henrik", family = "Singmann", role = "ctb", comment = c(ORCID = "0000-0002-4842-3657")))
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Depends: R (>= 3.6.0)
Imports: mgcv, ggplot2, tibble, dplyr, tidyr, rlang, cowplot, grid, mvnfast, purrr, stats, tools, grDevices
Suggests: testthat, vdiffr, MASS, scam, datasets
Description: Graceful 'ggplot'-based graphics and utility functions for working with generalized additive models (GAMs) fitted using the 'mgcv' package. Provides a reimplementation of the plot() method for GAMs that 'mgcv' provides, as well as 'tidyverse' compatible representations of estimated smooths.
License: MIT + file LICENSE
LazyData: true
URL: https://gavinsimpson.github.io/gratia
BugReports: https://github.com/gavinsimpson/gratia/issues
RoxygenNote: 7.0.2
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2020-01-17 16:09:17.810 UTC; gavin
Author: Gavin L. Simpson [aut, cre] (<https://orcid.org/0000-0002-9084-8413>), Henrik Singmann [ctb] (<https://orcid.org/0000-0002-4842-3657>)
Repository: CRAN
Date/Publication: 2020-01-19 20:20:03 UTC

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Package wyz.code.offensiveProgramming updated to version 1.1.16 with previous version 1.1.15 dated 2020-01-15

Title: Wizardry Code Offensive Programming
Description: Allows to change R coding from defensive programming (i.e. many input parameter checks implementation required) to offensive programming (none/reduced number of parameter checks required). Provides code instrumentation to ease this change. Should reduce the code size as many controls and type checks have no more reason to exist. Should also speed up processing as many checks will be reduced to single check.
Author: Fabien Gelineau <neonira@gmail.com>
Maintainer: Fabien Gelineau <neonira@gmail.com>

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Package wrapr updated to version 1.9.5 with previous version 1.9.4 dated 2020-01-17

Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides: '%.>%' dot-pipe (an 'S3' configurable pipe), 'let()' (converts non-standard evaluation interfaces to parametric standard evaluation interfaces, inspired by 'gtools:strmacro()' and 'base::bquote()'), 'build_frame()'/'draw_frame()' ('data.frame' example tools), 'qc()' (quoting concatenate), ':=' (named map builder), and more.
Author: John Mount [aut, cre], Nina Zumel [aut], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

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Package RRPP updated to version 0.5.1 with previous version 0.5.0 dated 2019-12-19

Title: Linear Model Evaluation with Randomized Residuals in a Permutation Procedure
Description: Linear model calculations are made for many random versions of data. Using residual randomization in a permutation procedure, sums of squares are calculated over many permutations to generate empirical probability distributions for evaluating model effects. This packaged is described by Collyer & Adams (2018) <doi:10.1111/2041-210X.13029>. Additionally, coefficients, statistics, fitted values, and residuals generated over many permutations can be used for various procedures including pairwise tests, prediction, classification, and model comparison. This package should provide most tools one could need for the analysis of high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer [aut, cre], Dean Adams [aut]
Maintainer: Michael Collyer <mlcollyer@gmail.com>

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Package RandVar updated to version 1.2.1 with previous version 1.2.0 dated 2019-04-03

Title: Implementation of Random Variables
Description: Implements random variables by means of S4 classes and methods.
Author: Matthias Kohl [cre, cph, aut], Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>

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Package gamlss.add updated to version 5.1-5 with previous version 5.0-1 dated 2016-10-19

Title: Extra Additive Terms for Generalized Additive Models for Location Scale and Shape
Description: Interface for extra smooth functions including tensor products, neural networks and decision trees.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob Rigby, Vlasios Voudouris, Daniil Kiose
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>

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Package flashlight updated to version 0.6.0 with previous version 0.5.0 dated 2019-12-05

Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by the help of model performance, variable importance, ICE profiles, partial dependence (Friedman J. H. (2001) <doi:10.1214/aos/1013203451>), accumulated local effects (Apley D. W. (2016) <arXiv:1612.08468>), further effects plots, scatter plots, interaction strength, and variable contribution breakdown (approximate SHAP) for single observations (Gosiewska and Biecek (2019) <arxiv:1903.11420>). All tools are implemented to work with case weights and allow for stratified analysis. Furthermore, multiple flashlights can be combined and analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>

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Package eggCounts updated to version 2.3 with previous version 2.2-1 dated 2019-09-26

Title: Hierarchical Modelling of Faecal Egg Counts
Description: An implementation of Bayesian hierarchical models for faecal egg count data to assess anthelmintic efficacy. Bayesian inference is done via MCMC sampling using 'Stan' <https://mc-stan.org/>.
Author: Craig Wang [aut, cre] (<https://orcid.org/0000-0003-1804-2463>), Michaela Paul [aut], Tea Isler [ctb], Reinhard Furrer [ctb] (<https://orcid.org/0000-0002-6319-2332>), Trustees of Columbia University [cph] (src/init.cpp, tools/make_cc.R, R/stanmodels.R)
Maintainer: Craig Wang <craig.wang@math.uzh.ch>

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Package distrMod updated to version 2.8.3 with previous version 2.8.2 dated 2019-05-02

Title: Object Oriented Implementation of Probability Models
Description: Implements S4 classes for probability models based on packages 'distr' and 'distrEx'.
Author: Matthias Kohl [aut, cph], Peter Ruckdeschel [cre, cph], R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>

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Package brms updated to version 2.11.1 with previous version 2.11.0 dated 2020-01-12

Title: Bayesian Regression Models using 'Stan'
Description: Fit Bayesian generalized (non-)linear multivariate multilevel models using 'Stan' for full Bayesian inference. A wide range of distributions and link functions are supported, allowing users to fit -- among others -- linear, robust linear, count data, survival, response times, ordinal, zero-inflated, hurdle, and even self-defined mixture models all in a multilevel context. Further modeling options include non-linear and smooth terms, auto-correlation structures, censored data, meta-analytic standard errors, and quite a few more. In addition, all parameters of the response distribution can be predicted in order to perform distributional regression. Prior specifications are flexible and explicitly encourage users to apply prior distributions that actually reflect their beliefs. Model fit can easily be assessed and compared with posterior predictive checks and leave-one-out cross-validation. References: Bürkner (2017) <doi:10.18637/jss.v080.i01>; Bürkner (2018) <doi:10.32614/RJ-2018-017>; Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>.
Author: Paul-Christian Bürkner [aut, cre]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>

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Package bigstatsr updated to version 1.1.2 with previous version 1.0.1 dated 2019-12-20

Title: Statistical Tools for Filebacked Big Matrices
Description: Easy-to-use, efficient, flexible and scalable statistical tools. Package bigstatsr provides and uses Filebacked Big Matrices via memory-mapping. It provides for instance matrix operations, Principal Component Analysis, sparse linear supervised models, utility functions and more <doi:10.1093/bioinformatics/bty185>.
Author: Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths]
Maintainer: Florian Privé <florian.prive.21@gmail.com>

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Package BayesianFROC updated to version 0.2.1 with previous version 0.2.0 dated 2019-10-25

Title: FROC Analysis by Bayesian Approaches
Description: Execute BayesianFROC::fit_GUI_Shiny() (or fit_GUI_Shiny_MRMC()) for a graphical user interface via Shiny. The free-response receiver operating characteristic (FROC) method developed by Chakraborty is a generalization of receiver operating characteristic analysis, but Chakraborty used a non-Bayesian approach. This package aims to reconstruct Chakraborty's technique using a Bayesian approach and to verify that our models fit practical datasets. We also develop hierarchical Bayesian models for comparing modalities with new methods. The ultimate aim of FROC analysis is to compare observer performances, which means comparing characteristics, such as area under the curve (AUC) or figure of merit (FOM). In this package, we only use the notion of AUC for modality comparison, where by "modality", we mean imaging methods such as Magnetic Resonance Imaging (MRI), Computed Tomography (CT), Positron Emission Tomography (PET), ..., etc. So there is a problem that which imaging method is better to detect lesions from shadows in radiographs. To solve modality comparison issues, this package provides new methods using hierarchical Bayesian models proposed by the author of this package. Using this package, one can obtain at least one conclusion that which imaging methods are better for finding lesions in radiographs with the case of your data. Fitting FROC statistical models is sometimes not so good, it can easily confirm by drawing FROC curves and comparing these curves and the points constructed by False Positive fractions (FPFs) and True Positive Fractions (TPFs), we can validate the goodness of fit intuitively. Such validation is also implemented by the Chi square goodness of fit statistics in the Bayesian context which means that the parameter is not deterministic, thus by integrating it with the posterior predictive measure, we get a desired value. To compare modalities (imaging methods: MRI, CT, PET, ... , etc), we evaluate AUCs for each modality. FROC is developed by Dev Chakraborty, his FROC model in his 1989 paper relies on the maximal likelihood methodology. The author modified and provided the alternative Bayesian FROC model. Strictly speaking, his model does not coincide with models in this package. In FROC context, we means by multiple reader and multiple case (MRMC) the case of the number of reader or modality is two or more. The MRMC data is available for functions of this package. I hope that medical researchers use not only the frequentist method but also alternative Bayesian methods. In medical research, many problems are considered under only frequentist methods, such as the notion of p-values. But p-value is sometimes misunderstood. Bayesian methods provide very simple, direct, intuitive answer for research questions. Combining frequentist methods with Bayesian methods, we can obtain more reliable answer for research questions. Please execute the following R scripts from the R (R studio) console, demo(demo_MRMC, package = "BayesianFROC"); demo(demo_srsc, package = "BayesianFROC"); demo(demo_stan, package = "BayesianFROC"); demo(demo_drawcurves_srsc, package = "BayesianFROC"); demo_Bayesian_FROC(); demo_Bayesian_FROC_without_pause(). References: Dev Chakraborty (1989) <doi:10.1118/1.596358> Maximum likelihood analysis of free - response receiver operating characteristic (FROC) data. Pre-print: Issei Tsunoda; Bayesian Models for free-response receiver operating characteristic analysis. See the vignettes for more details.
Author: Issei Tsunoda [aut, cre]
Maintainer: Issei Tsunoda <tsunoda.issei1111@gmail.com>

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 BayesianFROC-0.2.1/BayesianFROC/DESCRIPTION                                                                     |   49 
 BayesianFROC-0.2.1/BayesianFROC/MD5                                                                             |  352 
 BayesianFROC-0.2.1/BayesianFROC/NAMESPACE                                                                       |    8 
 BayesianFROC-0.2.1/BayesianFROC/NEWS.md                                                                         |   36 
 BayesianFROC-0.2.1/BayesianFROC/R/AFROC.R                                                                       |   12 
 BayesianFROC-0.2.1/BayesianFROC/R/BayesianFROC.R                                                                |  891 +
 BayesianFROC-0.2.1/BayesianFROC/R/ConfirmConvergence.R                                                          |   21 
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 BayesianFROC-0.2.1/BayesianFROC/R/StartupMessage.R                                                              |    9 
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 BayesianFROC-0.2.1/BayesianFROC/R/create_dataset.R                                                              |   25 
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 BayesianFROC-0.2.1/BayesianFROC/R/ex.R                                                                          |   65 
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 BayesianFROC-0.2.1/BayesianFROC/R/fit_GUI_MRMC.R                                                                |    9 
 BayesianFROC-0.2.1/BayesianFROC/R/fit_GUI_MRMC_new.R                                                            |    2 
 BayesianFROC-0.2.1/BayesianFROC/R/fit_GUI_Shiny.R                                                               |   42 
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 BayesianFROC-0.2.1/BayesianFROC/R/pause.R                                                                       |    9 
 BayesianFROC-0.2.1/BayesianFROC/R/plotFROC.R                                                                    |   18 
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 BayesianFROC-0.2.1/BayesianFROC/R/sbc.R                                                                         |   30 
 BayesianFROC-0.2.1/BayesianFROC/R/sortAUC.R                                                                     |   15 
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 BayesianFROC-0.2.1/BayesianFROC/R/summary_EAP_CI_srsc.R                                                         |    6 
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 BayesianFROC-0.2.1/BayesianFROC/README.md                                                                       | 4525 ----------
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 BayesianFROC-0.2.1/BayesianFROC/man/AFROC.Rd                                                                    |    6 
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 BayesianFROC-0.2.1/BayesianFROC/man/Author_vs_classic_for_AUC.Rd                                                |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/ConfirmConvergence.Rd                                                       |   20 
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 BayesianFROC-0.2.1/BayesianFROC/man/DrawCurves.Rd                                                               |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/DrawCurves_MRMC.Rd                                                          |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/DrawCurves_MRMC_pairwise.Rd                                                 |   13 
 BayesianFROC-0.2.1/BayesianFROC/man/DrawCurves_MRMC_pairwise_BlackWhite.Rd                                      |    4 
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 BayesianFROC-0.2.1/BayesianFROC/man/DrawCurves_srsc.Rd                                                          |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/Draw_AUC.Rd                                                                 |    6 
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 BayesianFROC-0.2.1/BayesianFROC/man/TRUE.Counter.in.vector.Rd                                                   |   13 
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 BayesianFROC-0.2.1/BayesianFROC/man/check_rhat.Rd                                                               |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/convertFromJafroc.Rd                                                        |  204 
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 BayesianFROC-0.2.1/BayesianFROC/man/create_dataset.Rd                                                           |   25 
 BayesianFROC-0.2.1/BayesianFROC/man/data.bad.fit.Rd                                                             |    6 
 BayesianFROC-0.2.1/BayesianFROC/man/data.nonconverge.srsc.Rd                                                    |    6 
 BayesianFROC-0.2.1/BayesianFROC/man/dataList.Chakra.1.Rd                                                        |    6 
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 BayesianFROC-0.2.1/BayesianFROC/man/dataList.Chakra.4.Rd                                                        |    6 
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 BayesianFROC-0.2.1/BayesianFROC/man/ddddd.Rd                                                                    |    3 
 BayesianFROC-0.2.1/BayesianFROC/man/dddddd.Rd                                                                   |    5 
 BayesianFROC-0.2.1/BayesianFROC/man/ddddddd.Rd                                                                  |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/dz.Rd                                                                       |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/extractAUC.Rd                                                               |   14 
 BayesianFROC-0.2.1/BayesianFROC/man/extract_EAP_CI.Rd                                                           |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/extract_EAP_by_array.Rd                                                     |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/extract_estimates_MRMC.Rd                                                   |    4 
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 BayesianFROC-0.2.1/BayesianFROC/man/fit_GUI_MRMC.Rd                                                             |    7 
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 BayesianFROC-0.2.1/BayesianFROC/man/fit_MRMC_versionTWO.Rd                                                      |  114 
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 BayesianFROC-0.2.1/BayesianFROC/man/get_posterior_variance.Rd                                                   |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/ggplotFROC.EAP.Rd                                                           |  114 
 BayesianFROC-0.2.1/BayesianFROC/man/ggplotFROC.Rd                                                               |  114 
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 BayesianFROC-0.2.1/BayesianFROC/man/give_name_srsc_data.Rd                                                      |  110 
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 BayesianFROC-0.2.1/BayesianFROC/man/hits_creator_from_rate.Rd                                                   |   27 
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 BayesianFROC-0.2.1/BayesianFROC/man/make_true_parameter_MRMC.Rd                                                 |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/metadata_srsc_per_image.Rd                                                  |  110 
 BayesianFROC-0.2.1/BayesianFROC/man/metadata_to_DrawCurve_MRMC.Rd                                               |    6 
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 BayesianFROC-0.2.1/BayesianFROC/man/mu.Rd                                                                       |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/mu_truth.Rd                                                                 |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/p.Rd                                                                        |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/p_truth.Rd                                                                  |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/pause.Rd                                                                    |    9 
 BayesianFROC-0.2.1/BayesianFROC/man/plotFROC.Rd                                                                 |   19 
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 BayesianFROC-0.2.1/BayesianFROC/man/ppp.Rd                                                                      |   16 
 BayesianFROC-0.2.1/BayesianFROC/man/ppp_MRMC.Rd                                                                 |   10 
 BayesianFROC-0.2.1/BayesianFROC/man/ppp_srsc.Rd                                                                 |   45 
 BayesianFROC-0.2.1/BayesianFROC/man/replicate_MRMC_dataList.Rd                                                  |   70 
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 BayesianFROC-0.2.1/BayesianFROC/man/sortAUC.Rd                                                                  |    8 
 BayesianFROC-0.2.1/BayesianFROC/man/stanfitExtended.Rd                                                          |   11 
 BayesianFROC-0.2.1/BayesianFROC/man/summarize_MRMC.Rd                                                           |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/summary_AUC_comparison_MRMC.Rd                                              |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/summary_AUC_comparison_MRMC_with_crayon.Rd                                  |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/summary_AUC_comparison_MRMC_without_crayon.Rd                               |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/summary_EAP_CI_srsc.Rd                                                      |    8 
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 BayesianFROC-0.2.1/BayesianFROC/man/v.Rd                                                                        |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/v_truth.Rd                                                                  |    2 
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 BayesianFROC-0.2.1/BayesianFROC/man/validation.draw_srsc.Rd                                                     |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/z.Rd                                                                        |    2 
 BayesianFROC-0.2.1/BayesianFROC/man/z_truth.Rd                                                                  |    2 
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More information about BayesianFROC at CRAN
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Package av updated to version 0.4.0 with previous version 0.3 dated 2019-08-21

Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with audio and video in R. Generate high quality videos files by capturing images from the R graphics device combined with custom audio stream. Also offers tools to convert between countless audio / video formats, or convert images to video and vice versa. This package interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between av versions 0.3 dated 2019-08-21 and 0.4.0 dated 2020-01-19

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More information about av at CRAN
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Package xaringan updated to version 0.14 with previous version 0.13 dated 2019-10-30

Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library 'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Alessandro Gasparini [ctb] (<https://orcid.org/0000-0002-8319-7624>), Benjie Gillam [ctb], Claus Thorn Ekstrøm [ctb], Daniel Anderson [ctb], Dawei Lang [ctb], Emi Tanaka [ctb], Garrick Aden-Buie [ctb], Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>), John Little [ctb], Joseph Casillas [ctb], Lucy D'Agostino McGowan [ctb] (<https://orcid.org/0000-0001-7297-9359>), Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>), Michael Wayne Kearney [ctb], Nan-Hung Hsieh [ctb], Ole Petter Bang [ctb] (CSS in rmarkdown/templates/xaringan/resources/default.css), Patrick Schratz [ctb], Paul Klemm [ctb] (<https://orcid.org/0000-0002-5985-1737>), Paul Lemmens [ctb], Sean Lopp [ctb], Yongfu Liao [ctb], Yue Jiang [ctb] (<https://orcid.org/0000-0002-9798-5517>)
Maintainer: Yihui Xie <xie@yihui.name>

Diff between xaringan versions 0.13 dated 2019-10-30 and 0.14 dated 2020-01-19

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 man/inf_mr.Rd                                                 |    6 +
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More information about xaringan at CRAN
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Package tmap updated to version 2.3-2 with previous version 2.3-1 dated 2019-09-17

Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre], Joel Gombin [ctb], Sebastian Jeworutzki [ctb], Kent Russell [ctb], Richard Zijdeman [ctb], John Clouse [ctb], Robin Lovelace [ctb], Jakub Nowosad [ctb], Jannes Muenchow [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>

Diff between tmap versions 2.3-1 dated 2019-09-17 and 2.3-2 dated 2020-01-19

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Package rquery updated to version 1.4.2 with previous version 1.4.1 dated 2020-01-08

Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational algebra, and on production experience using 'SQL' and 'dplyr' at big data scale. The design represents an attempt to make 'SQL' more teachable by denoting composition by a sequential pipeline notation instead of nested queries or functions. The implementation delivers reliable high performance data processing on large data systems such as 'Spark', databases, and 'data.table'. Package features include: data processing trees or pipelines as observable objects (able to report both columns produced and columns used), optimized 'SQL' generation as an explicit user visible table modeling step, plus explicit query reasoning and checking.
Author: John Mount [aut, cre], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

Diff between rquery versions 1.4.1 dated 2020-01-08 and 1.4.2 dated 2020-01-19

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Package RPushbullet updated to version 0.3.3 with previous version 0.3.2 dated 2019-07-21

Title: R Interface to the Pushbullet Messaging Service
Description: An R interface to the Pushbullet messaging service which provides fast and efficient notifications (and file transfer) between computers, phones and tablets. An account has to be registered at the site <http://www.pushbullet.com> site to obtain a (free) API key.
Author: Dirk Eddelbuettel with contributions by Bill Evans, Mike Birdgeneau, Henrik Bengtsson, Seth Wenchel, Colin Gillespie and Chan-Yub Park
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RPushbullet versions 0.3.2 dated 2019-07-21 and 0.3.3 dated 2020-01-19

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 10 files changed, 68 insertions(+), 22 deletions(-)

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New package rchallenge with initial version 1.3.2
Package: rchallenge
Title: A Simple Data Science Challenge System
Version: 1.3.2
Authors@R: c(person("Adrien", "Todeschini", email = "adrien.todeschini@gmail.com", role=c("aut", "cre")), person("Robin", "Genuer", email = "robin.genuer@isped.u-bordeaux2.fr", role=c("ctb")))
Description: A simple data science challenge system using R Markdown and 'Dropbox' <https://www.dropbox.com/>. It requires no network configuration, does not depend on external platforms like e.g. 'Kaggle' <https://www.kaggle.com/> and can be easily installed on a personal computer.
URL: https://adrtod.github.io/rchallenge
BugReports: https://github.com/adrtod/rchallenge/issues
Depends: R (>= 3.2.0)
Imports: rmarkdown (>= 0.5.1), knitr (>= 1.6)
SystemRequirements: pandoc (>= 1.12.3) - http://johnmacfarlane.net/pandoc
License: GPL-2
LazyData: true
RoxygenNote: 7.0.2
Encoding: UTF-8
Suggests: testthat (>= 2.1.0)
NeedsCompilation: no
Packaged: 2020-01-14 11:25:32 UTC; adrien
Author: Adrien Todeschini [aut, cre], Robin Genuer [ctb]
Maintainer: Adrien Todeschini <adrien.todeschini@gmail.com>
Repository: CRAN
Date/Publication: 2020-01-19 18:30:03 UTC

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Package MomTrunc updated to version 5.63 with previous version 5.57 dated 2020-01-09

Title: Moments of Folded and Doubly Truncated Multivariate Distributions
Description: It computes arbitrary products moments (mean vector and variance-covariance matrix), for some double truncated (and folded) multivariate distributions. These distributions belong to the family of selection elliptical distributions, which includes well known skewed distributions as the unified skew-t distribution (SUT) and its particular cases as the extended skew-t (EST), skew-t (ST) and the symmetric student-t (T) distribution. Analogous normal cases unified skew-normal (SUN), extended skew-normal (ESN), skew-normal (SN), and symmetric normal (N) are also included. Density, probabilities and random deviates are also offered for these members. References used for this package: Arellano-Valle, R. B. & Genton, M. G. (2005). On fundamental skew distributions. Journal of Multivariate Analysis, 96, 93-116. Galarza C.E., Matos L.A., Dey D.K. & Lachos V.H. (2019) On Moments of Folded and Truncated Multivariate Extended Skew-Normal Distributions. Technical report. ID 19-14. University of Connecticut. <https://stat.uconn.edu/tech-reports-2019/>.
Author: Christian E. Galarza, Raymond Kan and Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>

Diff between MomTrunc versions 5.57 dated 2020-01-09 and 5.63 dated 2020-01-19

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More information about MomTrunc at CRAN
Permanent link

Package micropan updated to version 2.0 with previous version 1.2 dated 2018-02-15

Title: Microbial Pan-Genome Analysis
Description: A collection of functions for computations and visualizations of microbial pan-genomes.
Author: Lars Snipen and Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>

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More information about micropan at CRAN
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New package MethComp with initial version 1.30.0
Package: MethComp
Version: 1.30.0
Date: 2020-01-14
Title: Analysis of Agreement in Method Comparison Studies
Authors@R: c(person(given="Bendix", family="Carstensen", email="b@bxc.dk", role=c("aut")), person(given="Lyle", family="Gurrin", email="lgurrin@unimelb.edu.au", role=c("aut")), person(given="Claus Thorn", family="Ekstrøm", email="ekstrom@sund.ku.dk", role=c("aut", "cre")), person(given="Michal", family="Figurski", email="figurski@mail.med.upenn.edu", role=c("aut")))
Depends: R (>= 3.5)
Imports: coda, nlme, rjags
Suggests: lattice, lme4
Description: Methods (standard and advanced) for analysis of agreement between measurement methods. These cover Bland-Altman plots, Deming regression, Lin's Total deviation index, and difference-on-average regression. See Carstensen B. (2010) "Comparing Clinical Measurement Methods: A Practical Guide (Statistics in Practice)" <doi:10.1002/9780470683019> for more information.
License: GPL (>= 2)
Encoding: UTF-8
URL: http://BendixCarstensen.com/MethComp/
BugReports: https://github.com/ekstroem/MethComp/issues
SystemRequirements: JAGS (http://mcmc-jags.sourceforge.net)
NeedsCompilation: no
Repository: CRAN
ByteCompile: true
RoxygenNote: 7.0.2
Packaged: 2020-01-17 20:09:14 UTC; cld189
Author: Bendix Carstensen [aut], Lyle Gurrin [aut], Claus Thorn Ekstrøm [aut, cre], Michal Figurski [aut]
Maintainer: Claus Thorn Ekstrøm <ekstrom@sund.ku.dk>
Date/Publication: 2020-01-19 18:30:10 UTC

More information about MethComp at CRAN
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New package disk.frame with initial version 0.3.2
Type: Package
Package: disk.frame
Title: Larger-than-RAM Disk-Based Data Manipulation Framework
Version: 0.3.2
Date: 2020-01-18
Authors@R: c( person("Dai", "ZJ", email = "zhuojia.dai@gmail.com", role = c("aut", "cre")), person("Jacky", "Poon", role = c("ctb")) )
Maintainer: Dai ZJ <zhuojia.dai@gmail.com>
Description: A disk-based data manipulation tool for working with large-than-RAM datasets. Aims to lower the barrier-to-entry for manipulating large datasets by adhering closely to popular and familiar data manipulation paradigms like dplyr verbs and data.table syntax.
License: MIT + file LICENSE
Imports: Rcpp (>= 0.12.13), glue (>= 1.3.1), rlang (>= 0.4.0), furrr (>= 0.1.0), future.apply (>= 1.3.0), fs (>= 1.3.1), jsonlite (>= 1.6), pryr (>= 0.1.4), stringr (>= 1.4.0), fst (>= 0.8.0), globals (>= 0.12.4), future (>= 1.14.0), data.table (>= 1.12.2), crayon (>= 1.3.4), bigreadr (>= 0.2.0), bit64
Depends: R (>= 3.4), dplyr (>= 0.8.3), purrr (>= 0.3.2)
Suggests: benchmarkme, testthat (>= 2.1.0), knitr, rmarkdown, nycflights13, magrittr, shiny, LaF, readr, rstudioapi, biglm, biglmm, speedglm, broom, learnr, ggplot2
LinkingTo: Rcpp
RoxygenNote: 7.0.2
VignetteBuilder: knitr
Encoding: UTF-8
URL: https://diskframe.com
BugReports: https://github.com/xiaodaigh/disk.frame/issues
NeedsCompilation: yes
Packaged: 2020-01-18 11:28:08 UTC; RTX2080
Author: Dai ZJ [aut, cre], Jacky Poon [ctb]
Repository: CRAN
Date/Publication: 2020-01-19 18:20:07 UTC

More information about disk.frame at CRAN
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Package agricolae updated to version 1.3-2 with previous version 1.3-1 dated 2019-04-04

Title: Statistical Procedures for Agricultural Research
Description: Original idea was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, National Engineering University (UNI), Lima-Peru. Some experimental data for the examples come from the CIP and others research. Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.
Author: Felipe de Mendiburu
Maintainer: Felipe de Mendiburu <fmendiburu@lamolina.edu.pe>

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More information about agricolae at CRAN
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Package adehabitatLT updated to version 0.3.25 with previous version 0.3.24 dated 2019-04-07

Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge <clement.calenge@ofb.gouv.fr>

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More information about adehabitatLT at CRAN
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Package xts updated to version 0.12-0 with previous version 0.11-2 dated 2018-11-05

Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ross Bennett [ctb], Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>

Diff between xts versions 0.11-2 dated 2018-11-05 and 0.12-0 dated 2020-01-19

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 xts-0.12-0/xts/src/diff.c                            |    3 
 xts-0.12-0/xts/src/init.c                            |   15 
 xts-0.12-0/xts/src/merge.c                           |   60 +-
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More information about xts at CRAN
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Package StanHeaders updated to version 2.21.0-1 with previous version 2.19.0 dated 2019-09-07

Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut], Joshua Pritikin [ctb], Andrew Gelman [aut], Bob Carpenter [aut], Matt Hoffman [aut], Daniel Lee [aut], Michael Betancourt [aut], Marcus Brubaker [aut], Jiqiang Guo [aut], Peter Li [aut], Allen Riddell [aut], Marco Inacio [aut], Mitzi Morris [aut], Jeffrey Arnold [aut], Rob Goedman [aut], Brian Lau [aut], Rob Trangucci [aut], Jonah Gabry [aut], Alp Kucukelbir [aut], Robert Grant [aut], Dustin Tran [aut], Michael Malecki [aut], Yuanjun Gao [aut], Trustees of Columbia University [cph], Lawrence Livermore National Security [cph] (CVODES), The Regents of the University of California [cph] (CVODES), Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between StanHeaders versions 2.19.0 dated 2019-09-07 and 2.21.0-1 dated 2020-01-19

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 StanHeaders-2.21.0-1/StanHeaders/DESCRIPTION                                                                        |   15 
 StanHeaders-2.21.0-1/StanHeaders/MD5                                                                                | 3443 +++++-----
 StanHeaders-2.21.0-1/StanHeaders/NAMESPACE                                                                          |    1 
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 StanHeaders-2.21.0-1/StanHeaders/inst/CITATION                                                                      |    6 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/callbacks/logger.hpp                                         |  182 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/callbacks/stream_logger.hpp                                  |  134 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/callbacks/stream_writer.hpp                                  |  191 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/callbacks/tee_writer.hpp                                     |  106 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/callbacks/writer.hpp                                         |   86 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/command/stanc_helper.hpp                                     |  221 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/array_var_context.hpp                                     |  626 +
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/chained_var_context.hpp                                   |  107 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/cmd_line.hpp                                              |  519 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/dump.hpp                                                  | 1470 ++--
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/empty_var_context.hpp                                     |  184 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/ends_with.hpp                                             |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/is_whitespace.hpp                                         |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/program_reader.hpp                                        |   79 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/random_var_context.hpp                                    |  479 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/read_line.hpp                                             |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/reader.hpp                                                |  139 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/stan_csv_reader.hpp                                       |  667 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/starts_with.hpp                                           |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/trim_spaces.hpp                                           |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/util.hpp                                                  |   51 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/validate_zero_buf.hpp                                     |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/var_context.hpp                                           |  485 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/io/writer.hpp                                                |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_is_data_vis.hpp                       |  152 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_is_data_vis_def.hpp                   |   68 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_order_id_vis.hpp                      |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_order_id_vis_def.hpp                  |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_set_is_data_vis.hpp                   |  136 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_set_is_data_vis_def.hpp               |   70 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_total_dims_vis.hpp                    |  138 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_total_dims_vis_def.hpp                |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_vis.hpp                               |  360 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_bounds_vis.hpp                       |  264 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_is_specialized_vis.hpp               |  267 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_offset_multiplier_vis_def.hpp        |   60 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/ends_with.hpp                                   |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/ends_with_def.hpp                               |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/fun_name_exists.hpp                             |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/fun_name_exists_def.hpp                         |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/generate_expression.hpp                         |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_ccdf.hpp                                    |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_ccdf_def.hpp                                |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_cdf.hpp                                     |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_cdf_def.hpp                                 |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_prob_fun.hpp                                |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/get_prob_fun_def.hpp                            |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_ccdf_suffix.hpp                             |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_ccdf_suffix_def.hpp                         |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_cdf_suffix.hpp                              |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_cdf_suffix_def.hpp                          |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_lp_suffix.hpp                               |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_lp_suffix_def.hpp                           |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var.hpp                           |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_def.hpp                       |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis.hpp                       |  386 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis_def.hpp                   |  296 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_prob_fun_suffix.hpp                         |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_prob_fun_suffix_def.hpp                     |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_rng_suffix.hpp                              |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_rng_suffix_def.hpp                          |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var.hpp                                     |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_def.hpp                                 |   14 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_assignable_def.hpp                           |   44 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_space.hpp                                    |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_space_def.hpp                                |   10 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined_def.hpp                         |   36 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined_prob_function.hpp               |   30 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/num_index_op_dims.hpp                           |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/print_scope.hpp                                 |   22 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type.hpp                                |   35 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_ccdf_suffix.hpp                           |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_cdf_suffix.hpp                            |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_prob_fun_suffix.hpp                       |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/template.hpp                                    |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis.hpp                              |  428 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis_def.hpp                          |  186 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg1_vis.hpp                           |  362 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg1_vis_def.hpp                       |  219 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg2_vis.hpp                           |  367 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg2_vis_def.hpp                       |  219 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/write_bare_expr_type.hpp                        |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/write_bare_expr_type_def.hpp                    |   61 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/write_block_var_type.hpp                        |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/write_idx_vis_def.hpp                           |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/nil.hpp                                             |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver.hpp                             |  104 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_control.hpp                     |  149 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_control_def.hpp                 |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_def.hpp                         |   23 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/assgn.hpp                                      |  155 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/assgn_def.hpp                                  |   41 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/binary_op.hpp                                  |   88 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/binary_op_def.hpp                              |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/block_var_decl_def.hpp                         |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/break_continue_statement.hpp                   |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/break_continue_statement_def.hpp               |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_op.hpp                             |  113 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_op_def.hpp                         |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_statement.hpp                      |   66 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_statement_def.hpp                  |   18 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/distribution.hpp                               |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/expression.hpp                                 |  151 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/expression_def.hpp                             |  104 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_array_statement.hpp                        |   77 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_array_statement_def.hpp                    |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_matrix_statement.hpp                       |   77 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_matrix_statement_def.hpp                   |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_statement.hpp                              |   76 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/for_statement_def.hpp                          |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/fun.hpp                                        |   91 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/fun_def.hpp                                    |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_def.hpp                          |  109 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_def_def.hpp                      |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_defs.hpp                         |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_defs_def.hpp                     |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/idx.hpp                                        |  143 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/idx_def.hpp                                    |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/increment_log_prob_statement.hpp               |   54 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/increment_log_prob_statement_def.hpp           |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/index_op.hpp                                   |   85 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/index_op_sliced.hpp                            |   87 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/index_op_sliced_def.hpp                        |   18 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal.hpp                                |   52 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal_def.hpp                            |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_1d.hpp                               |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_1d_def.hpp                           |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode.hpp                              |  145 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_control.hpp                      |  190 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_control_def.hpp                  |   38 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_def.hpp                          |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/lb_idx.hpp                                     |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/lb_idx_def.hpp                                 |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/local_var_decl_def.hpp                         |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/lub_idx.hpp                                    |   63 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/lub_idx_def.hpp                                |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/map_rect.hpp                                   |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/map_rect_def.hpp                               |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_expr.hpp                                |   78 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_expr_def.hpp                            |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/multi_idx.hpp                                  |   38 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/multi_idx_def.hpp                              |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/no_op_statement.hpp                            |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/omni_idx.hpp                                   |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/omni_idx_def.hpp                               |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/print_statement.hpp                            |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/print_statement_def.hpp                        |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/printable.hpp                                  |  104 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/printable_def.hpp                              |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/program.hpp                                    |  177 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/program_def.hpp                                |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/range.hpp                                      |   92 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/range_def.hpp                                  |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/reject_statement.hpp                           |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/reject_statement_def.hpp                       |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/return_statement.hpp                           |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/return_statement_def.hpp                       |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_expr.hpp                            |   78 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_expr_def.hpp                        |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/sample.hpp                                     |  111 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/sample_def.hpp                                 |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/statement.hpp                                  |  414 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/statement_def.hpp                              |   53 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/statements.hpp                                 |   70 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/statements_def.hpp                             |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/ub_idx.hpp                                     |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/ub_idx_def.hpp                                 |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/unary_op.hpp                                   |   74 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/unary_op_def.hpp                               |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/uni_idx.hpp                                    |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/uni_idx_def.hpp                                |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/var_decl.hpp                                   |  152 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/var_decl_def.hpp                               |   45 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/variable.hpp                                   |   72 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/variable_def.hpp                               |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/variable_dims.hpp                              |   65 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/variable_dims_def.hpp                          |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/while_statement.hpp                            |   65 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/while_statement_def.hpp                        |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/origin_block.hpp                                    |  160 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/scope.hpp                                           |  294 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/scope_def.hpp                                       |  173 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signature_t.hpp                       |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signatures.hpp                        |  813 +-
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signatures_def.hpp                    |  921 +-
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/bare_array_type_def.hpp                        |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/block_array_type_def.hpp                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/cholesky_factor_corr_block_type.hpp            |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/cholesky_factor_cov_block_type.hpp             |   87 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/double_block_type_def.hpp                      |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/double_type.hpp                                |   58 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/double_type_def.hpp                            |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/ill_formed_type.hpp                            |   47 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/ill_formed_type_def.hpp                        |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/int_block_type_def.hpp                         |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/int_type.hpp                                   |   59 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/int_type_def.hpp                               |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/local_array_type_def.hpp                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/local_var_type.hpp                             |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/local_var_type_def.hpp                         |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_block_type_def.hpp                      |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_local_type.hpp                          |   83 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_type.hpp                                |   58 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_type_def.hpp                            |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_block_type_def.hpp                  |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_local_type_def.hpp                  |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_type.hpp                            |   58 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_type_def.hpp                        |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/vector_block_type_def.hpp                      |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/vector_type.hpp                                |   58 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/vector_type_def.hpp                            |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/void_type.hpp                                  |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/type/void_type_def.hpp                              |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/variable_map.hpp                                    |  167 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/ast/variable_map_def.hpp                                |   65 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/compile_functions.hpp                                   |   83 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/compiler.hpp                                            |   75 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/function_signatures.h                                   |  139 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/constants.hpp                                 |   84 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/expression_visgen.hpp                         |  603 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/fun_scalar_type.hpp                           |   90 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_arg_decl.hpp                         |   50 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_array_builder_adds.hpp               |   39 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_bare_type.hpp                        |   99 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_block_var.hpp                        |   89 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_catch_throw_located.hpp              |   51 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_class_decl.hpp                       |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_class_decl_end.hpp                   |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_comment.hpp                          |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_constrained_param_names_method.hpp   |   65 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_constructor.hpp                      |  217 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_cpp.hpp                              |   88 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_data_var_ctor.hpp                    |   52 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_data_var_init.hpp                    |   85 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_destructor.hpp                       |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_dims_method.hpp                      |   94 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_expression.hpp                       |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_fun_inst_templ_params.hpp            |  103 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function.hpp                         |   71 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_arguments.hpp               |  118 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_body.hpp                    |   75 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_functor.hpp                 |   83 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_inline_return_type.hpp      |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation.hpp           |   86 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation_body.hpp      |  110 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation_name.hpp      |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiations.hpp          |   39 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_name.hpp                    |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_function_template_parameters.hpp     |  106 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_functions.hpp                        |   38 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_functor_arguments.hpp                |   68 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_globals.hpp                          |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_idx.hpp                              |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_idx_user.hpp                         |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_idxs.hpp                             |   65 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_idxs_user.hpp                        |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_include.hpp                          |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_includes.hpp                         |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_indent.hpp                           |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_indexed_expr.hpp                     |  128 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_indexed_expr_user.hpp                |   54 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_initializer.hpp                      |   87 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_line_number.hpp                      |   41 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_local_var_decl_inits.hpp             |  122 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_log_prob.hpp                         |  204 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_member_var_decls.hpp                 |   64 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_member_var_decls_all.hpp             |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_model_name_method.hpp                |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_model_typedef.hpp                    |   38 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_namespace_end.hpp                    |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_namespace_start.hpp                  |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_param_names_array.hpp                |   77 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_param_names_method.hpp               |   53 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_param_var.hpp                        |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_printable.hpp                        |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_private_decl.hpp                     |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_program_reader_fun.hpp               |   53 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_propto_default_function.hpp          |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_propto_default_function_body.hpp     |   53 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_public_decl.hpp                      |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_quoted_expression.hpp                |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_quoted_string.hpp                    |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_read_transform_params.hpp            |  101 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_real_var_type.hpp                    |   39 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_register_mpi.hpp                     |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_set_param_ranges.hpp                 |   89 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_standalone_functions.hpp             |   82 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_statement.hpp                        |   43 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_statements.hpp                       |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_transform_inits_method.hpp           |  302 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_try.hpp                              |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_typedef.hpp                          |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_typedefs.hpp                         |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_unconstrained_param_names_array.hpp  |   80 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_unconstrained_param_names_method.hpp |   68 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_using.hpp                            |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_using_namespace.hpp                  |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_usings.hpp                           |   38 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_usings_standalone_functions.hpp      |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_block_var.hpp               |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_context_size.hpp            |   82 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_nonnegative.hpp             |   62 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_tparam_inits.hpp            |   93 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_var_decl.hpp                |  116 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_var_dims.hpp                |   69 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_var_constructor.hpp                  |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_var_fill_define.hpp                  |   61 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_version_comment.hpp                  |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_void_statement.hpp                   |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_write_array_method.hpp               |  283 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/generate_write_block_var.hpp                  |   41 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/get_block_var_dims.hpp                        |   55 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/get_typedef_var_type.hpp                      |   41 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/get_verbose_var_type.hpp                      |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/idx_user_visgen.hpp                           |   82 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/idx_visgen.hpp                                |   92 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/is_numbered_statement_vis.hpp                 |   68 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/printable_visgen.hpp                          |   64 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/statement_visgen.hpp                          |  699 +-
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/visgen.hpp                                    |  100 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_begin_all_dims_col_maj_loop.hpp         |  139 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_begin_all_dims_row_maj_loop.hpp         |  139 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_begin_array_dims_loop.hpp               |   68 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_begin_param_elements_loop.hpp           |  147 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_constraints_fn.hpp                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_end_loop.hpp                            |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_nested_resize_loop_begin.hpp            |  108 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_resize_var_idx.hpp                      |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_decl_arg.hpp                        |  130 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_decl_type.hpp                       |   70 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_all_dims.hpp                    |   49 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_all_dims_msg.hpp                |   49 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_array_dims.hpp                  |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar.hpp                          |   54 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar_def.hpp                      |   93 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp                     |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/block_var_decls_grammar_def.hpp                |  284 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/block_var_decls_grammar_inst.cpp               |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/common_adaptors_def.hpp                        |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar.hpp                       |   51 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar_def.hpp                   |   58 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar_inst.cpp                  |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar.hpp                         |   70 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar_def.hpp                     |  157 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar_inst.cpp                    |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar.hpp                          |   72 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_def.hpp                      |  167 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_inst.cpp                     |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar.hpp                            |   91 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_def.hpp                        |  158 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_inst.cpp                       |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/iterator_typedefs.hpp                          |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar.hpp                    |  115 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar_def.hpp                |  248 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar_inst.cpp               |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar.hpp                            |  110 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_def.hpp                        |  252 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_inst.cpp                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions.hpp                           |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions_def.cpp                       |  439 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar.hpp                        |   52 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar_def.hpp                    |   92 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp                   |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar.hpp                          |  190 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_def.hpp                      |  612 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_inst.cpp                     |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar.hpp                               |  169 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_def.hpp                           |  654 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_inst.cpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar.hpp                         |   21 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar_def.hpp                     |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar_inst.cpp                    |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/parser.hpp                                              |  186 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/lang/rethrow_located.hpp                                     |  284 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/base_adaptation.hpp                                     |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/base_adapter.hpp                                        |   39 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/base_mcmc.hpp                                           |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/chains.hpp                                              | 1052 +--
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/covar_adaptation.hpp                                    |   54 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/fixed_param_sampler.hpp                                 |   21 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/base_hmc.hpp                                        |  337 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp                   |  173 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp                     |   97 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/dense_e_point.hpp                      |  113 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp                      |   88 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/diag_e_point.hpp                       |  108 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/ps_point.hpp                           |  134 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/softabs_metric.hpp                     |  354 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/softabs_point.hpp                      |   55 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/unit_e_metric.hpp                      |   85 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/unit_e_point.hpp                       |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/base_integrator.hpp                     |   25 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/base_leapfrog.hpp                       |  228 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/expl_leapfrog.hpp                       |   50 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/impl_leapfrog.hpp                       |  173 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_dense_e_nuts.hpp                         |   79 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp                          |   79 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_softabs_nuts.hpp                         |   66 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_unit_e_nuts.hpp                          |   66 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp                                  |  626 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/dense_e_nuts.hpp                               |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/diag_e_nuts.hpp                                |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/softabs_nuts.hpp                               |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/unit_e_nuts.hpp                                |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_dense_e_nuts_classic.hpp         |   84 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_diag_e_nuts_classic.hpp          |   86 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_unit_e_nuts_classic.hpp          |   67 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/base_nuts_classic.hpp                  |  368 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/dense_e_nuts_classic.hpp               |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/diag_e_nuts_classic.hpp                |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/unit_e_nuts_classic.hpp                |   37 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_dense_e_static_hmc.hpp                 |   92 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_diag_e_static_hmc.hpp                  |   87 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_softabs_static_hmc.hpp                 |   72 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_unit_e_static_hmc.hpp                  |   74 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/base_static_hmc.hpp                          |  237 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/dense_e_static_hmc.hpp                       |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/diag_e_static_hmc.hpp                        |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/softabs_static_hmc.hpp                       |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/unit_e_static_hmc.hpp                        |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_dense_e_static_uniform.hpp     |   88 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_diag_e_static_uniform.hpp      |   87 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_softabs_static_uniform.hpp     |   63 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_unit_e_static_uniform.hpp      |   74 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/base_static_uniform.hpp              |  281 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/dense_e_static_uniform.hpp           |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/diag_e_static_uniform.hpp            |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/softabs_static_uniform.hpp           |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/unit_e_static_uniform.hpp            |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_dense_e_xhmc.hpp                         |   85 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_diag_e_xhmc.hpp                          |   85 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_softabs_xhmc.hpp                         |   66 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_unit_e_xhmc.hpp                          |   67 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/base_xhmc.hpp                                  |  522 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/dense_e_xhmc.hpp                               |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/diag_e_xhmc.hpp                                |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/softabs_xhmc.hpp                               |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/unit_e_xhmc.hpp                                |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/sample.hpp                                              |   83 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_adaptation.hpp                                 |  169 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_adapter.hpp                                    |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_covar_adapter.hpp                              |   57 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_var_adapter.hpp                                |   58 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/var_adaptation.hpp                                      |   52 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/mcmc/windowed_adaptation.hpp                                 |  231 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/finite_diff_grad.hpp                                   |   95 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/grad_hess_log_prob.hpp                                 |  120 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/grad_tr_mat_times_hessian.hpp                          |   25 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/gradient.hpp                                           |   50 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/gradient_dot_vector.hpp                                |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/hessian.hpp                                            |   25 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/hessian_times_vector.hpp                               |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/deep_copy.hpp                                 |  112 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/index.hpp                                     |  193 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/index_list.hpp                                |  123 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/lvalue.hpp                                    |  877 +-
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/rvalue.hpp                                    |  700 --
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/rvalue_at.hpp                                 |  130 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/rvalue_index_size.hpp                         |  118 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/indexing/rvalue_return.hpp                             |  410 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/log_prob_grad.hpp                                      |  165 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/log_prob_propto.hpp                                    |  178 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/model_base.hpp                                         |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/model_base_crtp.hpp                                    |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/model_functional.hpp                                   |   39 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/model_header.hpp                                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/prob_grad.hpp                                          |  113 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/standalone_functions_header.hpp                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/model/test_gradients.hpp                                     |  174 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/bfgs.hpp                                        |  785 +-
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/bfgs_linesearch.hpp                             |  547 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/bfgs_update.hpp                                 |  111 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/lbfgs_update.hpp                                |  206 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/optimization/newton.hpp                                      |  124 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/diagnose/defaults.hpp                               |  137 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/diagnose/diagnose.hpp                               |  100 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/error_codes.hpp                                     |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/experimental/advi/defaults.hpp                      |  630 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/experimental/advi/fullrank.hpp                      |  152 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/experimental/advi/meanfield.hpp                     |  152 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/optimize/bfgs.hpp                                   |  325 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/optimize/defaults.hpp                               |  624 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/optimize/lbfgs.hpp                                  |  329 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/optimize/newton.hpp                                 |  207 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/defaults.hpp                                 |  969 +-
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/fixed_param.hpp                              |  130 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_dense_e.hpp                         |  241 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp                   |  299 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_diag_e.hpp                          |  239 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp                    |  295 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_unit_e.hpp                          |  116 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_unit_e_adapt.hpp                    |  138 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_dense_e.hpp                       |  238 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_dense_e_adapt.hpp                 |  300 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_diag_e.hpp                        |  238 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_diag_e_adapt.hpp                  |  298 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_unit_e.hpp                        |  115 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_unit_e_adapt.hpp                  |  139 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/sample/standalone_gqs.hpp                           |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/create_rng.hpp                                 |   55 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/create_unit_e_dense_inv_metric.hpp             |   54 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/create_unit_e_diag_inv_metric.hpp              |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/experimental_message.hpp                       |   49 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/generate_transitions.hpp                       |  127 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/gq_writer.hpp                                  |  165 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/initialize.hpp                                 |   95 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/mcmc_writer.hpp                                |   49 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/read_dense_inv_metric.hpp                      |   67 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/read_diag_inv_metric.hpp                       |   68 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/run_adaptive_sampler.hpp                       |  157 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/run_sampler.hpp                                |  130 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/validate_dense_inv_metric.hpp                  |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/services/util/validate_diag_inv_metric.hpp                   |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/advi.hpp                                         | 1043 +--
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/base_family.hpp                                  |  196 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/families/normal_fullrank.hpp                     |  970 +-
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/families/normal_meanfield.hpp                    |  848 +-
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/variational/print_progress.hpp                               |   87 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/src/stan/version.hpp                                                  |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/arr.hpp                                                 |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/arr/fun/log_sum_exp.hpp                                 |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/arr/fun/sum.hpp                                         |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/arr/fun/to_fvar.hpp                                     |   37 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/core/fvar.hpp                                           |   43 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat.hpp                                                 |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/Eigen_NumTraits.hpp                             |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/columns_dot_product.hpp                         |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/columns_dot_self.hpp                            |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/crossprod.hpp                                   |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/determinant.hpp                                 |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/divide.hpp                                      |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/dot_product.hpp                                 |   38 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/dot_self.hpp                                    |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/inverse.hpp                                     |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_determinant.hpp                             |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_softmax.hpp                                 |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_sum_exp.hpp                                 |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left.hpp                                |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left_ldlt.hpp                           |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left_tri_low.hpp                        |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_right.hpp                               |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_right_tri_low.hpp                       |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply.hpp                                    |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply_lower_tri_self_transpose.hpp           |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/qr_Q.hpp                                        |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/qr_R.hpp                                        |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/quad_form_sym.hpp                               |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/rows_dot_product.hpp                            |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/rows_dot_self.hpp                               |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/softmax.hpp                                     |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/squared_distance.hpp                            |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/sum.hpp                                         |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/tcrossprod.hpp                                  |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/to_fvar.hpp                                     |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/typedefs.hpp                                    |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/fun/unit_vector_constrain.hpp                       |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/functor/gradient.hpp                                |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/functor/hessian.hpp                                 |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/functor/jacobian.hpp                                |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/meta/operands_and_partials.hpp                      |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/mat/vectorize/apply_scalar_unary.hpp                    |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/meta.hpp                                                |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal.hpp                                                |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi_approx.hpp                                 |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/abs.hpp                                        |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/acos.hpp                                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/acosh.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/asin.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/asinh.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan2.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atanh.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/bessel_first_kind.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/bessel_second_kind.hpp                         |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/beta.hpp                                       |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/binary_log_loss.hpp                            |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/binomial_coefficient_log.hpp                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/cbrt.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/ceil.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/cos.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/cosh.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/digamma.hpp                                    |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/erf.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/erfc.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/exp.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/exp2.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/expm1.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fabs.hpp                                       |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/falling_factorial.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fdim.hpp                                       |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/floor.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fma.hpp                                        |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmax.hpp                                       |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmin.hpp                                       |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmod.hpp                                       |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_p.hpp                                    |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_q.hpp                                    |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/grad_inc_beta.hpp                              |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/hypot.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inc_beta.hpp                                   |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv.hpp                                        |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_Phi.hpp                                    |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_cloglog.hpp                                |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_logit.hpp                                  |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_sqrt.hpp                                   |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_square.hpp                                 |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/is_inf.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/is_nan.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lbeta.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/ldexp.hpp                                      |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lgamma.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lmgamma.hpp                                    |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log.hpp                                        |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log10.hpp                                      |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m.hpp                                      |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_exp.hpp                                  |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_inv_logit.hpp                            |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p_exp.hpp                                  |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log2.hpp                                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_diff_exp.hpp                               |   25 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_falling_factorial.hpp                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_inv_logit.hpp                              |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_inv_logit_diff.hpp                         |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_mix.hpp                                    |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_rising_factorial.hpp                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_sum_exp.hpp                                |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/logit.hpp                                      |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/modified_bessel_first_kind.hpp                 |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/modified_bessel_second_kind.hpp                |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/multiply_log.hpp                               |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/owens_t.hpp                                    |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/pow.hpp                                        |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/primitive_value.hpp                            |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/rising_factorial.hpp                           |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/round.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/sin.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/sinh.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/sqrt.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/square.hpp                                     |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/tan.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/tanh.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/tgamma.hpp                                     |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/to_fvar.hpp                                    |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/trigamma.hpp                                   |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/trunc.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/value_of.hpp                                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/value_of_rec.hpp                               |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/meta/is_fvar.hpp                                   |   21 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/meta/operands_and_partials.hpp                     |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/fwd/scal/meta/partials_type.hpp                             |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/memory/stack_alloc.hpp                                      |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/arr.hpp                                                 |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat.hpp                                                 |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/fun/typedefs.hpp                                    |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian.hpp                |   23 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian_auto.hpp           |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/grad_tr_mat_times_hessian.hpp               |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/gradient_dot_vector.hpp                     |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/hessian.hpp                                 |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/hessian_times_vector.hpp                    |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/mat/functor/partial_derivative.hpp                      |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/mix/meta.hpp                                                |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/buffer_types.hpp                                     |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/cholesky_decompose.hpp                               |   89 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/copy.hpp                                             |  256 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/copy_triangular.hpp                                  |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/diagonal_multiply.hpp                                |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_diagonal_zeros.hpp                         |   23 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_invalid_matrix_view.hpp                    |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_matching_dims.hpp                          |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_nan.hpp                                    |   27 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_square.hpp                                 |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_symmetric.hpp                              |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/err/check_triangular.hpp                             |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/identity.hpp                                         |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/is_matrix_cl.hpp                                     |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernel_cl.hpp                                        |  321 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/add.hpp                                      |   75 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/bernoulli_logit_glm_lpmf.hpp                 |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/check_diagonal_zeros.hpp                     |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/check_nan.hpp                                |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/check_symmetric.hpp                          |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/cholesky_decompose.hpp                       |   45 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/copy.hpp                                     |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/copy_triangular.hpp                          |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/device_functions                             |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/diag_inv.hpp                                 |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/divide_columns.hpp                           |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/helpers.hpp                                  |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/identity.hpp                                 |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/inv_lower_tri_multiply.hpp                   |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/matrix_multiply.hpp                          |  323 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/multiply_transpose.hpp                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/neg_binomial_2_log_glm_lpmf.hpp              |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/neg_rect_lower_tri_multiply.hpp              |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/normal_id_glm_lpdf.hpp                       |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/ordered_logistic_glm_lpmf.hpp                |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/pack.hpp                                     |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/poisson_log_glm_lpmf.hpp                     |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/scalar_mul.hpp                               |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/scalar_mul_diagonal.hpp                      |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/sub_block.hpp                                |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/subtract.hpp                                 |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/transpose.hpp                                |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/triangular_transpose.hpp                     |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/kernels/unpack.hpp                                   |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/matrix_cl.hpp                                        |  536 +
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/matrix_cl_view.hpp                                   |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/multiply.hpp                                         |  135 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/multiply_transpose.hpp                               |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/opencl.hpp                                           |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/stringify.hpp                                        |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/sub_block.hpp                                        |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/tri_inverse.hpp                                      |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/value_type.hpp                                       |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/opencl/zeros.hpp                                            |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr.hpp                                                |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/check_matching_sizes.hpp                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/check_nonzero_size.hpp                         |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/check_ordered.hpp                              |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/is_matching_size.hpp                           |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/is_nonzero_size.hpp                            |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/err/is_ordered.hpp                                 |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/array_builder.hpp                              |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/common_type.hpp                                |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/dot.hpp                                        |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/dot_self.hpp                                   |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/fill.hpp                                       |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/inverse_softmax.hpp                            |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/log_sum_exp.hpp                                |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_elements.hpp                           |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_scalar.hpp                             |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_scalar_type.hpp                        |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/rep_array.hpp                                  |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/scaled_add.hpp                                 |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/sort_asc.hpp                                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/sort_desc.hpp                                  |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/sub.hpp                                        |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/sum.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/value_of.hpp                                   |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/value_of_rec.hpp                               |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/vec_concat.hpp                                 |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_observer.hpp                   |  136 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_system.hpp                     |   98 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_1d.hpp                           |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp                     |   77 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/VectorBuilderHelper.hpp                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/index_type.hpp                                |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/is_constant.hpp                               |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/is_vector.hpp                                 |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/scalar_type.hpp                               |   25 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/arr/meta/value_type.hpp                                |   12 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/core.hpp                                               |only
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/eigen_plugins.h                                    |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor.hpp                      |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor_corr.hpp                 |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_column_index.hpp                         |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_consistent_size_mvt.hpp                  |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_consistent_sizes_mvt.hpp                 |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_corr_matrix.hpp                          |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cov_matrix.hpp                           |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_finite.hpp                               |    6 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_lower_triangular.hpp                     |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_matching_dims.hpp                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_multiplicable.hpp                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_nonempty.hpp                             |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_ordered.hpp                              |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_definite.hpp                         |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_semidefinite.hpp                     |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_positive_ordered.hpp                     |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_range.hpp                                |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_row_index.hpp                            |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_simplex.hpp                              |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_spsd_matrix.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_square.hpp                               |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_std_vector_index.hpp                     |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_symmetric.hpp                            |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_unit_vector.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/check_vector.hpp                               |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/constraint_tolerance.hpp                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_cholesky_factor.hpp                         |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_cholesky_factor_corr.hpp                    |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_column_index.hpp                            |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_corr_matrix.hpp                             |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_ldlt_factor.hpp                             |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_lower_triangular.hpp                        |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_mat_finite.hpp                              |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_matching_dims.hpp                           |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_pos_definite.hpp                            |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_square.hpp                                  |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_symmetric.hpp                               |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/is_unit_vector.hpp                             |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/err/validate_non_negative_index.hpp                |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/Eigen.hpp                                      |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/LDLT_factor.hpp                                |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/MatrixExponential.h                            |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/accumulator.hpp                                |   23 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/add.hpp                                        |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/add_diag.hpp                                   |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/append_array.hpp                               |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/append_col.hpp                                 |   45 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/append_row.hpp                                 |   39 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/assign.hpp                                     |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/autocorrelation.hpp                            |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/chol2inv.hpp                                   |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_constrain.hpp                    |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_free.hpp                         |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_decompose.hpp                         |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_factor_constrain.hpp                  |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_factor_free.hpp                       |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/common_type.hpp                                |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/corr_matrix_constrain.hpp                      |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/corr_matrix_free.hpp                           |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_exp_quad.hpp                               |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_constrain.hpp                       |   25 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_constrain_lkj.hpp                   |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_free.hpp                            |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_free_lkj.hpp                        |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_u.hpp                              |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_v.hpp                              |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_w.hpp                              |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_matrix_times_vector.hpp                    |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_to_dense_matrix.hpp                        |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cumulative_sum.hpp                             |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_post_multiply.hpp                         |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_pre_multiply.hpp                          |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/digamma.hpp                                    |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/dims.hpp                                       |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/distance.hpp                                   |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/divide.hpp                                     |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/divide_columns.hpp                             |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/dot_product.hpp                                |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/elt_divide.hpp                                 |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/elt_multiply.hpp                               |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/exp2.hpp                                       |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_U.hpp                                   |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_cov_matrix.hpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/get_lp.hpp                                     |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_dot_prod_cov.hpp                            |   38 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_exp_quad_cov.hpp                            |  588 +
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_exponential_cov.hpp                         |   89 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_matern32_cov.hpp                            |   99 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_matern52_cov.hpp                            |  138 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_periodic_cov.hpp                            |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/head.hpp                                       |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/initialize.hpp                                 |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/inverse_spd.hpp                                |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/log2.hpp                                       |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/log_mix.hpp                                    |  126 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/log_sum_exp.hpp                                |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/make_nu.hpp                                    |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp                             |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp                  |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_pade.hpp                            |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/max.hpp                                        |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left.hpp                               |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_ldlt.hpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_spd.hpp                           |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_tri.hpp                           |   99 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_tri_low.hpp                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right.hpp                              |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_ldlt.hpp                         |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_spd.hpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_tri.hpp                          |   47 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_tri_low.hpp                      |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/mean.hpp                                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/min.hpp                                        |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/multiply.hpp                                   |   60 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/num_elements.hpp                               |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/ordered_constrain.hpp                          |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/ordered_free.hpp                               |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/positive_ordered_constrain.hpp                 |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/positive_ordered_free.hpp                      |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/prod.hpp                                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_elements.hpp                           |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_scalar.hpp                             |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_scalar_type.hpp                        |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_Q.hpp                                       |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_R.hpp                                       |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_thin_Q.hpp                                  |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_thin_R.hpp                                  |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/quad_form_diag.hpp                             |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/rank.hpp                                       |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_L.hpp                                |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_matrix.hpp                                 |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_row_vector.hpp                             |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_vector.hpp                                 |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/resize.hpp                                     |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sd.hpp                                         |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/segment.hpp                                    |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/simplex_constrain.hpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/simplex_free.hpp                               |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices.hpp                               |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_asc.hpp                           |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_desc.hpp                          |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/stan_print.hpp                                 |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sub_col.hpp                                    |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sub_row.hpp                                    |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/subtract.hpp                                   |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/tail.hpp                                       |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/tcrossprod.hpp                                 |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_array_1d.hpp                                |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_array_2d.hpp                                |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_matrix.hpp                                  |   53 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_row_vector.hpp                              |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_vector.hpp                                  |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_gen_inv_quad_form_ldlt.hpp               |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_gen_quad_form.hpp                        |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_inv_quad_form_ldlt.hpp                   |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/typedefs.hpp                                   |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/unit_vector_constrain.hpp                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/unit_vector_free.hpp                           |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/value_of.hpp                                   |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/value_of_rec.hpp                               |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/variance.hpp                                   |   18 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp                    |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/welford_var_estimator.hpp                      |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient.hpp                   |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient_auto.hpp              |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian.hpp                    |   83 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian_auto.hpp               |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian_helper.hpp             |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect.hpp                               |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_combine.hpp                       |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp                    |  130 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_mpi.hpp                           |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_reduce.hpp                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/functor/mpi_parallel_call.hpp                      |   37 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/append_return_type.hpp                        |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/as_array_or_scalar.hpp                        |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/as_column_vector_or_scalar.hpp                |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/as_scalar.hpp                                 |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/broadcast_array.hpp                           |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/index_type.hpp                                |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/is_constant.hpp                               |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/is_eigen.hpp                                  |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/operands_and_partials.hpp                     |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/scalar_type.hpp                               |   59 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/seq_view.hpp                                  |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/value_type.hpp                                |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_log.hpp                   |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp                  |   73 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_rng.hpp                   |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_log.hpp                           |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_glm_lpmf.hpp                |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_log.hpp                     |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp                    |   36 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_rng.hpp                     |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_lpmf.hpp                          |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_rng.hpp                           |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_log.hpp                             |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp                            |  103 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_rng.hpp                             |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_log.hpp                      |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_lpdf.hpp                     |   45 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_rng.hpp                      |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_log.hpp                           |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_lpdf.hpp                          |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_rng.hpp                           |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_log.hpp                     |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_lpdf.hpp                    |   59 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_rng.hpp                     |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_log.hpp                              |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_lpdf.hpp                             |   83 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_rng.hpp                              |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_log.hpp                               |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_lpdf.hpp                              |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_log.hpp                    |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_lpdf.hpp                   |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_rng.hpp                    |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_log.hpp                     |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_lpdf.hpp                    |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_log.hpp                              |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_lpdf.hpp                             |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_log.hpp                 |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_lpdf.hpp                |   70 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_rng.hpp                 |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_log.hpp                          |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp                         |   39 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_log.hpp                     |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_lpdf.hpp                    |   47 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_rng.hpp                     |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_rng.hpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_log.hpp                       |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_lpdf.hpp                      |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_rng.hpp                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_log.hpp                           |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_lpmf.hpp                          |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_rng.hpp                           |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_log.hpp                |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp               |  103 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/normal_id_glm_log.hpp                         |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/normal_id_glm_lpdf.hpp                        |  137 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_glm_lpmf.hpp                 |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_log.hpp                      |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_lpmf.hpp                     |   49 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_rng.hpp                      |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_log.hpp                        |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_lpmf.hpp                       |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_rng.hpp                        |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp                       |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp                      |   65 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_log.hpp                               |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_lpdf.hpp                              |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_rng.hpp                               |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/mat/vectorize/apply_scalar_unary.hpp                   |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/meta.hpp                                               |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal.hpp                                               |   41 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_2F1_converges.hpp                       |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_3F2_converges.hpp                       |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_bounded.hpp                             |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_size.hpp                     |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_sizes.hpp                    |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_finite.hpp                              |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater.hpp                             |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater_or_equal.hpp                    |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less.hpp                                |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less_or_equal.hpp                       |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_nonnegative.hpp                         |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_not_nan.hpp                             |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive.hpp                            |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_finite.hpp                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_size_match.hpp                          |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error.hpp                              |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error_vec.hpp                          |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument_vec.hpp                      |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_less_or_equal.hpp                          |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_not_nan.hpp                                |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_positive.hpp                               |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_scal_finite.hpp                            |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/is_size_match.hpp                             |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/out_of_range.hpp                              |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/system_error.hpp                              |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/F32.hpp                                       |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi.hpp                                       |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi_approx.hpp                                |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/abs.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/acosh.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/as_bool.hpp                                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/asinh.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/atanh.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_first_kind.hpp                         |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_second_kind.hpp                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/beta.hpp                                      |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/binary_log_loss.hpp                           |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/binomial_coefficient_log.hpp                  |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/boost_policy.hpp                              |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/cbrt.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/choose.hpp                                    |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/common_type.hpp                               |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/constants.hpp                                 |   57 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/corr_constrain.hpp                            |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/corr_free.hpp                                 |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/digamma.hpp                                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/distance.hpp                                  |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/divide.hpp                                    |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/erf.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/erfc.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/exp.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/exp2.hpp                                      |   18 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/expm1.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/falling_factorial.hpp                         |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fdim.hpp                                      |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fill.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/finite_diff_stepsize.hpp                      |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fma.hpp                                       |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fmax.hpp                                      |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/fmin.hpp                                      |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/gamma_p.hpp                                   |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/gamma_q.hpp                                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_2F1.hpp                                  |   21 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_F32.hpp                                  |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_inc_beta.hpp                             |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_beta.hpp                         |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_gamma.hpp                        |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_lower_inc_gamma.hpp                  |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/hypot.hpp                                     |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/ibeta.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/identity_constrain.hpp                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/identity_free.hpp                             |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/if_else.hpp                                   |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta.hpp                                  |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_dda.hpp                              |   43 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_ddb.hpp                              |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_ddz.hpp                              |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/int_step.hpp                                  |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_Phi.hpp                                   |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_cloglog.hpp                               |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_logit.hpp                                 |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_sqrt.hpp                                  |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_square.hpp                                |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_any_nan.hpp                                |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_inf.hpp                                    |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_integer.hpp                                |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nan.hpp                                    |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nonpositive_integer.hpp                    |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_uninitialized.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lb_constrain.hpp                              |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lb_free.hpp                                   |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lbeta.hpp                                     |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/ldexp.hpp                                     |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lgamma.hpp                                    |   67 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lmgamma.hpp                                   |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/locscale_constrain.hpp                        |   23 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/locscale_free.hpp                             |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m.hpp                                     |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_exp.hpp                                 |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_inv_logit.hpp                           |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p_exp.hpp                                 |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log2.hpp                                      |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_diff_exp.hpp                              |   21 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_falling_factorial.hpp                     |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit.hpp                             |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit_diff.hpp                        |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_mix.hpp                                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_modified_bessel_first_kind.hpp            |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_rising_factorial.hpp                      |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_sum_exp.hpp                               |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_and.hpp                               |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_eq.hpp                                |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_gt.hpp                                |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_gte.hpp                               |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_lt.hpp                                |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_lte.hpp                               |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_negation.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_neq.hpp                               |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_or.hpp                                |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/logit.hpp                                     |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lub_constrain.hpp                             |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/lub_free.hpp                                  |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_first_kind.hpp                |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_second_kind.hpp               |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/modulus.hpp                                   |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/multiply_log.hpp                              |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/offset_multiplier_constrain.hpp               |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/offset_multiplier_free.hpp                    |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/owens_t.hpp                                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/positive_constrain.hpp                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/positive_free.hpp                             |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/primitive_value.hpp                           |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/prob_constrain.hpp                            |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/prob_free.hpp                                 |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_elements.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_scalar.hpp                            |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_scalar_type.hpp                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/rising_factorial.hpp                          |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/round.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/sign.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/size_zero.hpp                                 |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/sqrt.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/square.hpp                                    |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/squared_distance.hpp                          |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/step.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/sum.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/tgamma.hpp                                    |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/trigamma.hpp                                  |   23 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/trunc.hpp                                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/ub_constrain.hpp                              |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/ub_free.hpp                                   |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of.hpp                                  |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of_rec.hpp                              |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/StdVectorBuilder.hpp                         |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorBuilder.hpp                            |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorBuilderHelper.hpp                      |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/ad_promotable.hpp                            |  146 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/bool_constant.hpp                            |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/child_type.hpp                               |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/conjunction.hpp                              |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_fvar.hpp                            |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_std_vector.hpp                      |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_vector.hpp                          |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/disjunction.hpp                              |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/include_summand.hpp                          |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/index_type.hpp                               |   18 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_constant.hpp                              |   21 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_eigen.hpp                                 |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_fvar.hpp                                  |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_var.hpp                                   |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_var_or_arithmetic.hpp                     |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_vector.hpp                                |   77 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/is_vector_like.hpp                           |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/operands_and_partials.hpp                    |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/partials_return_type.hpp                     |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/partials_type.hpp                            |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/promote_args.hpp                             |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/require_generics.hpp                         |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/return_type.hpp                              |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_seq_view.hpp                          |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_type.hpp                              |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_type_pre.hpp                          |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/value_type.hpp                               |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_ccdf_log.hpp                       |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf.hpp                            |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf_log.hpp                        |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lccdf.hpp                          |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lcdf.hpp                           |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_log.hpp                            |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_log.hpp                      |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_lpmf.hpp                     |   45 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_rng.hpp                      |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp                           |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_rng.hpp                            |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_ccdf_log.hpp                   |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf.hpp                        |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf_log.hpp                    |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lccdf.hpp                      |   34 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_log.hpp                        |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lpmf.hpp                       |  140 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp                        |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_ccdf_log.hpp                            |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf.hpp                                 |   64 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf_log.hpp                             |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lccdf.hpp                               |   50 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lcdf.hpp                                |   50 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_log.hpp                                 |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lpdf.hpp                                |   95 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_ccdf_log.hpp                 |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_cdf_log.hpp                  |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lccdf.hpp                    |   53 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lcdf.hpp                     |   52 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_log.hpp                      |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lpdf.hpp                     |   71 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_rng.hpp                      |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_rng.hpp                                 |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_ccdf_log.hpp                        |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf.hpp                             |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf_log.hpp                         |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lccdf.hpp                           |   36 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lcdf.hpp                            |   36 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_log.hpp                             |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_log.hpp                       |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_lpmf.hpp                      |   51 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lpmf.hpp                            |   50 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_rng.hpp                             |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_ccdf_log.hpp                          |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf.hpp                               |   49 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf_log.hpp                           |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lccdf.hpp                             |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lcdf.hpp                              |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_log.hpp                               |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lpdf.hpp                              |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_rng.hpp                               |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_ccdf_log.hpp                      |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf.hpp                           |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf_log.hpp                       |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lccdf.hpp                         |   37 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lcdf.hpp                          |   37 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_log.hpp                           |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lpdf.hpp                          |   74 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_rng.hpp                           |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_ccdf_log.hpp              |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf.hpp                   |   44 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lccdf.hpp                 |   37 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_log.hpp                   |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lpdf.hpp                  |   56 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_rng.hpp                   |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_ccdf_log.hpp                  |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf.hpp                       |   48 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lccdf.hpp                     |   39 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lpdf.hpp                      |   53 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_rng.hpp                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_ccdf_log.hpp                     |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf.hpp                          |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf_log.hpp                      |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lccdf.hpp                        |   31 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lcdf.hpp                         |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_log.hpp                          |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lpdf.hpp                         |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_rng.hpp                          |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_ccdf_log.hpp                         |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf.hpp                              |   44 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf_log.hpp                          |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lccdf.hpp                            |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lcdf.hpp                             |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_log.hpp                              |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lpdf.hpp                             |   85 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_rng.hpp                              |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_ccdf_log.hpp                           |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf.hpp                                |   56 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf_log.hpp                            |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lccdf.hpp                              |   49 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lpdf.hpp                               |   69 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_rng.hpp                                |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_ccdf_log.hpp                          |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf.hpp                               |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf_log.hpp                           |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lccdf.hpp                             |   31 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_log.hpp                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_lpmf.hpp                      |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_rng.hpp                       |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_ccdf_log.hpp                  |    6 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lpdf.hpp                           |   86 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_ccdf_log.hpp                        |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf.hpp                             |   51 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf_log.hpp                         |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lccdf.hpp                           |   36 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_ccdf_log.hpp                       |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf.hpp                            |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf_log.hpp                        |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lccdf.hpp                          |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lcdf.hpp                           |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_log.hpp                            |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lpdf.hpp                           |   88 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_rng.hpp                            |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp                  |    4 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_lpmf.hpp                  |   63 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_rng.hpp                       |    4 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf.hpp                         |   48 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_log.hpp                         |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lpmf.hpp                        |   93 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_rng.hpp                         |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_ccdf_log.hpp                          |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf.hpp                               |   55 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf_log.hpp                           |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lccdf.hpp                             |   40 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_log.hpp                               |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lpdf.hpp                              |   51 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_rng.hpp                               |    4 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_ccdf_log.hpp                          |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf.hpp                               |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf_log.hpp                           |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lccdf.hpp                             |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lcdf.hpp                              |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_log.hpp                               |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lpdf.hpp                              |   81 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_ccdf_log.hpp                   |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf.hpp                        |   66 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lpdf.hpp                       |   68 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_rng.hpp                        |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_ccdf_log.hpp                         |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf.hpp                              |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf_log.hpp                          |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lccdf.hpp                            |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lcdf.hpp                             |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log.hpp                              |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_log.hpp                          |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_lpmf.hpp                         |   56 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_rng.hpp                          |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lpmf.hpp                             |   46 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_rng.hpp                              |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_ccdf_log.hpp                        |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf.hpp                             |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf_log.hpp                         |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lccdf.hpp                           |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lcdf.hpp                            |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_log.hpp                             |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lpdf.hpp                            |   45 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_rng.hpp                             |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_ccdf_log.hpp           |    4 
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 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lpdf.hpp               |   93 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_rng.hpp                |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_ccdf_log.hpp                     |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf.hpp                          |   50 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf_log.hpp                      |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lccdf.hpp                        |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lcdf.hpp                         |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_log.hpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lpdf.hpp                         |   56 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_rng.hpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/std_normal_log.hpp                           |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/std_normal_lpdf.hpp                          |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_ccdf_log.hpp                       |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf.hpp                            |   85 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf_log.hpp                        |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lccdf.hpp                          |   60 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lcdf.hpp                           |   64 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_log.hpp                            |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lpdf.hpp                           |   78 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_rng.hpp                            |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_ccdf_log.hpp                         |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf.hpp                              |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf_log.hpp                          |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lccdf.hpp                            |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lcdf.hpp                             |   34 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_log.hpp                              |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lpdf.hpp                             |   51 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_rng.hpp                              |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_log.hpp                            |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_lpdf.hpp                           |   60 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_rng.hpp                            |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_ccdf_log.hpp                         |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf.hpp                              |   51 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf_log.hpp                          |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lccdf.hpp                            |   36 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lcdf.hpp                             |   36 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_log.hpp                              |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lpdf.hpp                             |   91 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_rng.hpp                              |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_log.hpp                               |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_lpdf.hpp                              |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr.hpp                                                 |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/fun/log_sum_exp.hpp                                 |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/fun/sum.hpp                                         |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/fun/to_var.hpp                                      |   21 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/functor/coupled_ode_system.hpp                      |  509 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/arr/functor/integrate_1d.hpp                            |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core.hpp                                                |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/autodiffstackstorage.hpp                           |  136 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/build_vari_array.hpp                               |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/chainable_alloc.hpp                                |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/chainablestack.hpp                                 |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/empty_nested.hpp                                   |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/gevv_vvv_vari.hpp                                  |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/grad.hpp                                           |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/init_chainablestack.hpp                            |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/matrix_vari.hpp                                    |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/nested_size.hpp                                    |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_addition.hpp                              |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_divide_equal.hpp                          |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_division.hpp                              |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_minus_equal.hpp                           |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_multiplication.hpp                        |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_multiply_equal.hpp                        |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_plus_equal.hpp                            |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_subtraction.hpp                           |   17 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_unary_decrement.hpp                       |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_unary_increment.hpp                       |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_unary_negative.hpp                        |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/operator_unary_plus.hpp                            |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/precomputed_gradients.hpp                          |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/print_stack.hpp                                    |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/recover_memory.hpp                                 |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/recover_memory_nested.hpp                          |   29 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/set_zero_all_adjoints.hpp                          |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp                   |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/start_nested.hpp                                   |   14 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/stored_gradient_vari.hpp                           |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/var.hpp                                            |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/vari.hpp                                           |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/core/vector_vari.hpp                                    |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat.hpp                                                 |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp                             |  185 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_alloc.hpp                                  |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_factor.hpp                                 |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/cholesky_decompose.hpp                          |   79 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/columns_dot_product.hpp                         |   18 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/columns_dot_self.hpp                            |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/cov_exp_quad.hpp                                |   43 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/crossprod.hpp                                   |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/determinant.hpp                                 |   40 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/divide.hpp                                      |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/dot_product.hpp                                 |  100 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/dot_self.hpp                                    |   36 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/gp_exp_quad_cov.hpp                             |   56 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp                             |   35 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/grad.hpp                                        |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/initialize_variable.hpp                         |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/inverse.hpp                                     |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant.hpp                             |   25 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant_ldlt.hpp                        |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant_spd.hpp                         |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_softmax.hpp                                 |   62 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/log_sum_exp.hpp                                 |   26 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/matrix_exp_multiply.hpp                         |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left.hpp                                |  225 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp                           |  133 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_spd.hpp                            |  182 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_tri.hpp                            |  354 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/multiply.hpp                                    |  371 -
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/multiply_lower_tri_self_transpose.hpp           |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/ordered_constrain.hpp                           |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/positive_ordered_constrain.hpp                  |    7 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/quad_form.hpp                                   |   23 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/quad_form_sym.hpp                               |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/rows_dot_product.hpp                            |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/scale_matrix_exp_multiply.hpp                   |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/sd.hpp                                          |   48 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/simplex_constrain.hpp                           |    6 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/softmax.hpp                                     |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/squared_distance.hpp                            |   69 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/stan_print.hpp                                  |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/sum.hpp                                         |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/tcrossprod.hpp                                  |   19 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/to_var.hpp                                      |   75 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_gen_inv_quad_form_ldlt.hpp                |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_gen_quad_form.hpp                         |   36 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp                    |   78 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_quad_form.hpp                             |   22 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/typedefs.hpp                                    |   27 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/unit_vector_constrain.hpp                       |   28 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/variance.hpp                                    |   39 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/adj_jac_apply.hpp                           |   24 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_fp.hpp                       |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_newton.hpp                   |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_powell.hpp                   |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_system.hpp                          |   33 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_integrator.hpp                       |   92 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_ode_data.hpp                         |   32 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_utils.hpp                            |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/gradient.hpp                                |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_forward_system.hpp                     |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_integrator.hpp                         |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_system.hpp                             |   15 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_dae.hpp                           |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp                     |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_bdf.hpp                       |   11 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/jacobian.hpp                                |   21 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/kinsol_data.hpp                             |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/kinsol_solve.hpp                            |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/map_rect_concurrent.hpp                     |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/functor/map_rect_reduce.hpp                         |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/meta/operands_and_partials.hpp                      |   30 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/mat/vectorize/apply_scalar_unary.hpp                    |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/meta.hpp                                                |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal.hpp                                                |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/Phi.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/Phi_approx.hpp                                 |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/abs.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/acos.hpp                                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/acosh.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/as_bool.hpp                                    |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/asin.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/asinh.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/atan.hpp                                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/atan2.hpp                                      |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/atanh.hpp                                      |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/bessel_first_kind.hpp                          |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/bessel_second_kind.hpp                         |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/beta.hpp                                       |only
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/binary_log_loss.hpp                            |    8 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_fpclassify.hpp                           |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isfinite.hpp                             |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isnormal.hpp                             |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/calculate_chain.hpp                            |    3 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/cbrt.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/ceil.hpp                                       |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/cos.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/cosh.hpp                                       |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/digamma.hpp                                    |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/erf.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/erfc.hpp                                       |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/exp.hpp                                        |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/exp2.hpp                                       |    4 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/expm1.hpp                                      |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fabs.hpp                                       |   10 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/falling_factorial.hpp                          |    1 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fdim.hpp                                       |   16 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/floor.hpp                                      |    5 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fma.hpp                                        |   42 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fmax.hpp                                       |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fmin.hpp                                       |   20 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/fmod.hpp                                       |   12 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_p.hpp                                    |   13 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_q.hpp                                    |    2 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/grad_inc_beta.hpp                              |    9 
 StanHeaders-2.21.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/hypot.hpp                                      |    1 
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Package mlr3verse updated to version 0.1.1 with previous version 0.1.0 dated 2019-12-15

Title: Easily Install and Load the 'mlr3' Package Family
Description: The 'mlr3' package family is a set of packages for machine-learning purposes built in a modular fashion. This wrapper package is aimed to simplify the installation and loading of the core 'mlr3' packages. Get more information about the 'mlr3' project at <https://mlr3book.mlr-org.com/>.
Author: Patrick Schratz [cre, aut] (<https://orcid.org/0000-0003-0748-6624>), Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>

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New package optpart with initial version 3.0-3
Package: optpart
Version: 3.0-3
Title: Optimal Partitioning of Similarity Relations
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Depends: cluster, labdsv, MASS, plotrix
Suggests: tree
Description: Contains a set of algorithms for creating partitions and coverings of objects largely based on operations on (dis)similarity relations (or matrices). There are several iterative re-assignment algorithms optimizing different goodness-of-clustering criteria. In addition, there are covering algorithms 'clique' which derives maximal cliques, and 'maxpact' which creates a covering of maximally compact sets. Graphical analyses and conversion routines are also included.
License: GPL (>= 2)
URL: http://ecology.msu.montana.edu/labdsv/R
NeedsCompilation: yes
Packaged: 2020-01-17 13:31:54 UTC; dvrbts
Repository: CRAN
Date/Publication: 2020-01-19 17:10:02 UTC

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Package fcaR updated to version 1.0.3 with previous version 1.0.2 dated 2020-01-12

Title: Formal Concept Analysis
Description: Provides tools to perform fuzzy formal concept analysis, presented in Wille (1982) <doi:10.1007/978-3-642-01815-2_23> and in Ganter and Obiedkov (2016) <doi:10.1007/978-3-662-49291-8>. It provides functions to load and save a formal context, extract its concept lattice and implications. In addition, one can use the implications to compute semantic closures of fuzzy sets and, thus, build recommendation systems.
Author: Domingo Lopez Rodriguez [aut, cre] (<https://orcid.org/0000-0002-0172-1585>), Angel Mora [aut], Jesus Dominguez [aut], Ana Villalon [aut], Ian Johnson [ctb]
Maintainer: Domingo Lopez Rodriguez <dominlopez@uma.es>

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Package coala updated to version 0.6.0 with previous version 0.5.3 dated 2019-07-09

Title: A Framework for Coalescent Simulation
Description: Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. You can use this package to specify such models, to conduct the simulations and to calculate additional statistics from the results. It relies on existing simulators for doing the simulation, and currently supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites mutation models by combining the simulators with the program 'seq-gen'.
Author: Paul Staab [aut, cre], Dirk Metzler [aut, ths], Jorge E. Amaya Romero [ctb]
Maintainer: Paul Staab <develop@paulstaab.de>

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Package vip updated to version 0.2.0 with previous version 0.1.3 dated 2019-07-03

Title: Variable Importance Plots
Description: A general framework for constructing variable importance plots from various types of machine learning models in R. Aside from some standard model- specific variable importance measures, this package also provides model- agnostic approaches that can be applied to any supervised learning algorithm. These include 1) an efficient permutation-based variable importance measure, 2) variable importance based on Shapley values (Strumbelj and Kononenko, 2014) <doi:10.1007/s10115-013-0679-x>, and 3) the variance-based approach described in Greenwell et al. (2018) <arXiv:1805.04755>. A variance-based method for quantifying the relative strength of interaction effects is also included (see the previous reference for details).
Author: Brandon Greenwell [aut, cre] (<https://orcid.org/0000-0002-8120-0084>), Brad Boehmke [aut] (<https://orcid.org/0000-0002-3611-8516>), Bernie Gray [aut] (<https://orcid.org/0000-0001-9190-6032>)
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>

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Package solaR updated to version 0.45 with previous version 0.44 dated 2016-04-16

Title: Radiation and Photovoltaic Systems
Description: Calculation methods of solar radiation and performance of photovoltaic systems from daily and intradaily irradiation data sources.
Author: Oscar Perpiñán Lamigueiro [cre, aut] (<https://orcid.org/0000-0002-4134-7196>)
Maintainer: Oscar Perpiñán Lamigueiro <oscar.perpinan@upm.es>

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Package smoke updated to version 2.0.0 with previous version 1.0.1 dated 2019-12-16

Title: Small Molecule Octet/BLI Kinetics Experiment
Description: Bio-Layer Interferometry (BLI) is a technology to determine the binding kinetics between biomolecules. BLI signals are small and noisy when small molecules are investigated as ligands (analytes). We develop this package to process and analyze the BLI data acquired on Octet Red96 from Fortebio more accurately. Sun Q., Li X., et al (2020) <doi:10.1038/s41467-019-14238-3>. In this new version, we organize the BLI experiment data and analysis methods into a S4 class with self-explaining structure.
Author: Qingan Sun, Xiaojun Li, James C Sacchettini
Maintainer: Qingan Sun <quinsun@gmail.com>

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More information about smoke at CRAN
Permanent link

New package seagull with initial version 1.0.3
Package: seagull
Type: Package
Title: Lasso, Group Lasso, and Sparse-Group Lasso for Mixed Models
Version: 1.0.3
Date: 2020-01-14
Authors@R: c(person("Jan", "Klosa", role = c("aut", "cre"), email = "klosa@fbn-dummerstorf.de"), person("Noah", "Simon", role = "ths"), person("Dörte", "Wittenburg", role = "ths"))
Maintainer: Jan Klosa <klosa@fbn-dummerstorf.de>
Description: Proximal gradient descent solver for the operators lasso, group lasso, and sparse-group lasso. The implementation involves backtracking line search and warm starts. Input data needs to be clustered/grouped for the (sparse-)group lasso before calling these algorithms.
License: GPL (>= 2)
URL: https://github.com/jklosa/seagull
BugReports: https://github.com/jklosa/seagull/issues
Depends: R (>= 3.5.0)
Encoding: UTF-8
LazyData: true
Imports: Rcpp (>= 1.0.3)
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 7.0.2
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2020-01-14 15:34:19 UTC; klosa
Author: Jan Klosa [aut, cre], Noah Simon [ths], Dörte Wittenburg [ths]
Repository: CRAN
Date/Publication: 2020-01-19 16:20:02 UTC

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New package miceRanger with initial version 1.1.0
Package: miceRanger
Title: Multiple Imputation by Chained Equations with Random Forests
Version: 1.1.0
Authors@R: person(given = "Sam", family = "Wilson", role = c("aut","cre"), email = "samwilson303@gmail.com")
Maintainer: Sam Wilson <samwilson303@gmail.com>
Description: Multiple Imputation has been shown to be a flexible method to impute missing values by Van Buuren (2007) <doi:10.1177/0962280206074463>. Expanding on this, random forests have been shown to be an accurate model by Stekhoven and Buhlmann <arXiv:1105.0828> to impute missing values in datasets. They have the added benefits of returning out of bag error and variable importance estimates, as well as being simple to run in parallel.
Encoding: UTF-8
LazyData: true
License: MIT + file LICENSE
Depends: R (>= 3.5.0)
Imports: ranger, data.table, stats, FNN, ggplot2, gridExtra, crayon, corrplot, ggpubr, DescTools, foreach
Suggests: knitr, rmarkdown, doParallel
RoxygenNote: 7.0.2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-01-14 14:43:41 UTC; SamWilson
Author: Sam Wilson [aut, cre]
Repository: CRAN
Date/Publication: 2020-01-19 16:20:06 UTC

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New package isoboost with initial version 1.0.0
Package: isoboost
Title: Isotonic Boosting Classification Rules
Version: 1.0.0
Date: 2020-01-14
Authors@R: c( person("David", "Conde", email = "dconde@eio.uva.es", role = c("aut", "cre")), person("Miguel A.", "Fernandez", email = "miguelaf@eio.uva.es", role = "aut"), person("Cristina", "Rueda", email = "cristina.rueda@uva.es", role = "aut"), person("Bonifacio", "Salvador", email = "bosal@eio.uva.es", role = "aut"))
Description: In classification problems a monotone relation between some predictors and the classes may be assumed. In this package 'isoboost' we propose new boosting algorithms, based on LogitBoost, that incorporate this isotonicity information, yielding more accurate and easily interpretable rules.
Imports: Iso, isotone, rpart
License: GPL-2 | GPL-3
NeedsCompilation: no
Packaged: 2020-01-14 15:24:09 UTC; davidconde
Author: David Conde [aut, cre], Miguel A. Fernandez [aut], Cristina Rueda [aut], Bonifacio Salvador [aut]
Maintainer: David Conde <dconde@eio.uva.es>
Repository: CRAN
Date/Publication: 2020-01-19 16:30:03 UTC

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Package GWASinspector updated to version 1.4.2 with previous version 1.3.4 dated 2019-12-01

Title: Comprehensive and Easy to Use Quality Control of GWAS Results
Description: When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.
Author: Alireza Ani [aut, cre], Peter J. van der Most [aut], Ahmad Vaez [aut], Ilja M. Nolte [aut]
Maintainer: Alireza Ani <a.ani@umcg.nl>

Diff between GWASinspector versions 1.3.4 dated 2019-12-01 and 1.4.2 dated 2020-01-19

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New package BAS with initial version 1.5.4
Package: BAS
Version: 1.5.4
Date: 2020-1-8
Title: Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling
Authors@R: c(person("Merlise", "Clyde", email="clyde@duke.edu", role=c("aut","cre", "cph"), comment=c("ORCID=0000-0002-3595-1872") ), person("Michael", "Littman", role="ctb"), person("Quanli", "Wang", role="ctb"), person("Joyee", "Ghosh", role="ctb"), person("Yingbo", "Li", role="ctb"), person("Don", "van de Bergh", role="ctb"))
Depends: R (>= 3.0)
Imports: stats, graphics, utils, grDevices
Suggests: MASS, knitr, ggplot2, GGally, rmarkdown, roxygen2, dplyr, glmbb, pkgdown, testthat, covr
Description: Package for Bayesian Variable Selection and Model Averaging in linear models and generalized linear models using stochastic or deterministic sampling without replacement from posterior distributions. Prior distributions on coefficients are from Zellner's g-prior or mixtures of g-priors corresponding to the Zellner-Siow Cauchy Priors or the mixture of g-priors from Liang et al (2008) <DOI:10.1198/016214507000001337> for linear models or mixtures of g-priors from Li and Clyde (2019) <DOI:10.1080/01621459.2018.1469992> in generalized linear models. Other model selection criteria include AIC, BIC and Empirical Bayes estimates of g. Sampling probabilities may be updated based on the sampled models using Sampling w/out Replacement or an efficient MCMC algorithm which samples models using the BAS tree structure as an efficient hash table. Uniform priors over all models or beta-binomial prior distributions on model size are allowed, and for large p truncated priors on the model space may be used to enforce sampling models that are full rank. The user may force variables to always be included in addition to imposing constraints that higher order interactions are included only if their parents are included in the model. Details behind the sampling algorithm are provided in Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>. This material is based upon work supported by the National Science Foundation under Grant DMS-1106891. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
License: GPL (>= 3)
URL: https://www.r-project.org, https://github.com/merliseclyde/BAS
BugReports: https://github.com/merliseclyde/BAS/issues
Repository: CRAN
NeedsCompilation: yes
ByteCompile: yes
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.0.2
Packaged: 2020-01-15 14:03:07 UTC; mclyde
Author: Merlise Clyde [aut, cre, cph] (ORCID=0000-0002-3595-1872), Michael Littman [ctb], Quanli Wang [ctb], Joyee Ghosh [ctb], Yingbo Li [ctb], Don van de Bergh [ctb]
Maintainer: Merlise Clyde <clyde@duke.edu>
Date/Publication: 2020-01-19 17:00:05 UTC

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Package APML0 updated to version 0.10 with previous version 0.9 dated 2018-04-23

Title: Augmented and Penalized Minimization Method L0
Description: Fit linear, logistic and Cox models regularized with L0, lasso (L1), elastic-net (L1 and L2), or net (L1 and Laplacian) penalty, and their adaptive forms, such as adaptive lasso / elastic-net and net adjusting for signs of linked coefficients. It solves L0 penalty problem by simultaneously selecting regularization parameters and performing hard-thresholding or selecting number of non-zeros. This augmented and penalized minimization method provides an approximation solution to the L0 penalty problem, but runs as fast as L1 regularization problem. The package uses one-step coordinate descent algorithm and runs extremely fast by taking into account the sparsity structure of coefficients. It could deal with very high dimensional data and has superior selection performance.
Author: Xiang Li, Shanghong Xie, Donglin Zeng and Yuanjia Wang
Maintainer: Xiang Li <spiritcoke@gmail.com>

Diff between APML0 versions 0.9 dated 2018-04-23 and 0.10 dated 2020-01-19

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 R/net_cox.R                      |  391 +++++++-----
 R/net_lm.R                       |  429 ++++++++-----
 R/net_logit.R                    |  388 ++++++------
 inst/include/APML0.h             |   18 
 inst/include/APML0_RcppExports.h | 1003 +++++++++++++++++--------------
 man/APML0-package.Rd             |   22 
 man/APML0.Rd                     |   78 +-
 man/print.APML0.Rd               |    2 
 src/APML0.cpp                    | 1225 +++++++++++++++++++++++----------------
 src/RcppExports.cpp              |  398 ++++++++++--
 14 files changed, 2465 insertions(+), 1587 deletions(-)

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Package vamc (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-10-08 0.1.0

Permanent link
New package statgenGWAS with initial version 1.0.1
Package: statgenGWAS
Type: Package
Title: Genome Wide Association Studies
Version: 1.0.1
Date: 2020-01-14
Authors@R: c(person(given = "Bart-Jan", family = "van Rossum", email = "bart-jan.vanrossum@wur.nl", role = c("aut", "cre")), person(given = "Willem", family = "Kruijer", role = "aut", comment = c(ORCID = "0000-0001-7179-1733")), person(given = "Fred", family = "van Eeuwijk", role = "ctb", comment = c(ORCID = "0000-0003-3672-2921")), person(given = "Martin", family = "Boer", role = "ctb"), person(given = "Marcos", family = "Malosetti", role = "ctb", comment = c(ORCID = "0000-0002-8150-1397")), person(given = "Daniela", family = "Bustos-Korts", role = "ctb", comment = c(ORCID = "0000-0003-3827-6726")), person(given = "Emilie", family = "Millet", role = "ctb", comment = c(ORCID = "0000-0002-2913-4892")), person(given = "Joao", family = "Paulo", role = "ctb", comment = c(ORCID = "0000-0002-4180-0763")), person(given = "Maikel", family = "Verouden", role = "ctb", comment = c(ORCID = "0000-0002-4893-3323")), person(given = "Ron", family = "Wehrens", role = "ctb", comment = c(ORCID = "0000-0002-8798-5599")), person(given = "Choazhi", family = "Zheng", role = "ctb", comment = c(ORCID = "0000-0001-6030-3933")) )
Description: Fast single trait Genome Wide Association Studies (GWAS). One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
Depends: R (>= 3.5)
Imports: data.table, ggplot2 (>= 3.0.0), sommer (>= 3.7.3), Rcpp
Suggests: knitr, rmarkdown, officer, rvg, tinytest
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2020-01-14 10:53:44 UTC; rossu027
Author: Bart-Jan van Rossum [aut, cre], Willem Kruijer [aut] (<https://orcid.org/0000-0001-7179-1733>), Fred van Eeuwijk [ctb] (<https://orcid.org/0000-0003-3672-2921>), Martin Boer [ctb], Marcos Malosetti [ctb] (<https://orcid.org/0000-0002-8150-1397>), Daniela Bustos-Korts [ctb] (<https://orcid.org/0000-0003-3827-6726>), Emilie Millet [ctb] (<https://orcid.org/0000-0002-2913-4892>), Joao Paulo [ctb] (<https://orcid.org/0000-0002-4180-0763>), Maikel Verouden [ctb] (<https://orcid.org/0000-0002-4893-3323>), Ron Wehrens [ctb] (<https://orcid.org/0000-0002-8798-5599>), Choazhi Zheng [ctb] (<https://orcid.org/0000-0001-6030-3933>)
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Repository: CRAN
Date/Publication: 2020-01-19 15:30:02 UTC

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New package opentripplanner with initial version 0.2.0.3
Package: opentripplanner
Title: Setup and connect to 'OpenTripPlanner'
Version: 0.2.0.3
Authors@R: c( person("Malcolm", "Morgan", email = "m.morgan1@leeds.ac.uk", role = c("aut","cre"), comment = c(ORCID = "0000-0002-9488-9183")), person("Marcus", "Young", email = "M.A.Young@soton.ac.uk", role = "aut", comment = c(ORCID = "0000-0003-4627-1116")), person("Robin", "Lovelace", email = "rob00x@gmail.com", role = "aut", comment = c(ORCID = "0000-0001-5679-6536")), person("Layik", "Hama", email = "layik.hama@gmail.com", role = "ctb", comment = c(ORCID = "0000-0003-1912-4890")) )
Maintainer: Malcolm Morgan <m.morgan1@leeds.ac.uk>
Description: Setup and connect to 'OpenTripPlanner' (OTP) <http://www.opentripplanner.org/>. OTP is an open source platform for multi-modal and multi-agency journey planning written in 'Java'. The package allows you to manage a local version or connect to remote OTP server e.g. <https://api.digitransit.fi:443/routing/v1/routers/hsl>. This package has been peer-reviewed by rOpenSci (v. 0.2.0.0).
Language: EN-GB
License: GPL-3
URL: https://github.com/ropensci/opentripplanner, https://docs.ropensci.org/opentripplanner/
BugReports: https://github.com/ropensci/opentripplanner/issues
Encoding: UTF-8
LazyData: true
Imports: checkmate, dplyr, geodist, googlePolylines, httr, jsonlite, pbapply, sf
RoxygenNote: 7.0.2
Suggests: covr, knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-01-06 22:49:38 UTC; malcolm
Author: Malcolm Morgan [aut, cre] (<https://orcid.org/0000-0002-9488-9183>), Marcus Young [aut] (<https://orcid.org/0000-0003-4627-1116>), Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>), Layik Hama [ctb] (<https://orcid.org/0000-0003-1912-4890>)
Repository: CRAN
Date/Publication: 2020-01-19 15:20:02 UTC

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New package NGSSEML with initial version 1.0
Package: NGSSEML
Type: Package
Title: Non-Gaussian State-Space with Exact Marginal Likelihood
Version: 1.0
Date: 2020-01-14
Author: Thiago Rezende dos Santos <thiagords@est.ufmg.br>, Dani Gamerman <dani@im.ufrj.br>, Glaura da Conceicao Franco <glaura@est.ufmg.br>
Maintainer: T. R. dos Santos <thiagords@est.ufmg.br>
Description: Due to a large quantity of non-Gaussian time series and reliability data, the R-package non-Gaussian state-space with exact marginal likelihood is useful for modeling and forecasting non-Gaussian time series and reliability data via non-Gaussian state-space models with the exact marginal likelihood easily, see Gamerman, Santos and Franco (2013) <doi:10.1111/jtsa.12039> and Santos, Gamerman and Franco (2017) <doi:10.1109/TR.2017.2670142>. The package gives codes for formulating and specifying the non-Gaussian state-space models in the R language. Inferences for the parameters of the model can be made under the classical and Bayesian. Furthermore, prediction, filtering, and smoothing procedures can be used to perform inferences for the latent parameters. Applications include, e.g., count, volatility, piecewise exponential, and software reliability data.
License: GPL (>= 2)
URL: https://github.com/hadht/NGSSEML-R-Package
Imports: mvtnorm, fields, compiler, dlm, car, interp
Depends: R (>= 1.9.0), R (>= 3.5.0), R (>= 3.5.0), R (>= 3.5.0), R (>= 3.5.0), R (>= 3.5.0), R (>= 3.5.0)
Collate: 'FilteringF.r' 'gridfunction.r' 'GridP.r' 'LikeF.r' 'LikeF2.r' 'ngssm.bayes.r' 'ngssm.mle.r' 'NumFail.r' 'PlotF.r' 'Prediction.r' 'PriorF.r' 'ProdXtChi.r' 'SmoothingF.r' 'TTime.r'
NeedsCompilation: no
Packaged: 2020-01-14 12:46:43 UTC; Windows 8
Repository: CRAN
Date/Publication: 2020-01-19 15:40:03 UTC

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New package LassoNet with initial version 0.8.3
Package: LassoNet
Type: Package
Title: 3CoSE Algorithm
Version: 0.8.3
Date: 2019-12-17
Author: Jonas Striaukas [aut, trl, cre] and Matthias Weber [aut]
Maintainer: Jonas Striaukas <jonas.striaukas@gmail.com>
Description: Contains functions to estimate a penalized regression model using 3CoSE algorithm, see Weber, Striaukas, Schumacher Binder (2018) <doi:10.2139/ssrn.3211163>.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.5)
Suggests: snowfall
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2020-01-14 12:37:39 UTC; striaukas
Repository: CRAN
Date/Publication: 2020-01-19 15:30:08 UTC

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New package centrifugeR with initial version 0.1.3
Package: centrifugeR
Type: Package
Title: Balancing Centrifuge Rotors
Version: 0.1.3
Authors@R: person("Duy Nghia", "Pham", email = "nghiapham@yandex.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1349-1710"))
Description: Find the numbers of tubes that can be loaded in centrifuge rotors and give the instructions on how to balance these tubes in cases of equal or unequal masses. The methods of the package are constructed based on Sivek (2010) <doi:10.1515/integ.2010.031> and Peil and Hauryliuk (2010) <arXiv:1004.3671>.
Depends: R (>= 3.6.0)
Imports: pracma (>= 2.2.9), grDevices, graphics, utils
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.0.2
NeedsCompilation: no
Packaged: 2020-01-14 12:44:02 UTC; Nghia Pham
Author: Duy Nghia Pham [aut, cre] (<https://orcid.org/0000-0003-1349-1710>)
Maintainer: Duy Nghia Pham <nghiapham@yandex.com>
Repository: CRAN
Date/Publication: 2020-01-19 15:30:05 UTC

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Package edgarWebR (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-01-09 1.0.1
2018-05-24 1.0.0
2018-02-13 0.3.1
2017-12-22 0.3.0
2017-10-31 0.2.1
2017-10-12 0.2.0
2017-08-20 0.1.1
2017-08-15 0.1.0

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Package pcFactorStan updated to version 1.3.0 with previous version 1.2.0 dated 2019-10-11

Title: Stan Models for the Paired Comparison Factor Model
Description: Provides convenience functions and pre-programmed Stan models related to the paired comparison factor model. Its purpose is to make fitting paired comparison data using Stan easy.
Author: Joshua N. Pritikin [aut, cre] (<https://orcid.org/0000-0002-9862-5484>), Daniel C. Furr [ctb], Trustees of Columbia University [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>

Diff between pcFactorStan versions 1.2.0 dated 2019-10-11 and 1.3.0 dated 2020-01-19

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Package formulaic updated to version 0.0.6 with previous version 0.0.5 dated 2019-12-16

Title: Dynamic Generation and Quality Checks of Formula Objects
Description: Many statistical models and analyses in R are implemented through formula objects. The formulaic package creates a unified approach for programmatically and dynamically generating formula objects. Users may specify the outcome and inputs of a model directly, search for variables to include based upon naming patterns, incorporate interactions, and identify variables to exclude. A wide range of quality checks are implemented to identify issues such as misspecified variables, duplication, a lack of contrast in the inputs, and a large number of levels in categorical data. Variables that do not meet these quality checks can be automatically excluded from the model. These issues are documented and reported in a manner that provides greater accountability and useful information to guide an investigation of the data.
Author: David Shilane [aut], Caffrey Lee [aut, ctb], Zichen Huang [aut, ctb], Anderson Nelson [aut, ctb, cre]
Maintainer: Anderson Nelson <an2908@columbia.edu>

Diff between formulaic versions 0.0.5 dated 2019-12-16 and 0.0.6 dated 2020-01-19

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Package WVPlots updated to version 1.2.3 with previous version 1.2.2 dated 2019-11-03

Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'. Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions, conditioned scatter plot with marginal densities, box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre], Nina Zumel [aut], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

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Package RCurl updated to version 1.98-1.1 with previous version 1.95-4.13 dated 2020-01-16

Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <http://curl.haxx.se/libcurl/> Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
Author: CRAN Team [ctb, cre] (de facto maintainer since 2013), Duncan Temple Lang [aut] (<https://orcid.org/0000-0003-0159-1546>)
Maintainer: CRAN Team <CRAN@r-project.org>

Diff between RCurl versions 1.95-4.13 dated 2020-01-16 and 1.98-1.1 dated 2020-01-19

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Package bggum updated to version 1.0.2 with previous version 1.0.1 dated 2020-01-09

Title: Bayesian Estimation of Generalized Graded Unfolding Model Parameters
Description: Provides a Metropolis-coupled Markov chain Monte Carlo sampler, post-processing and parameter estimation functions, and plotting utilities for the generalized graded unfolding model of Roberts, Donoghue, and Laughlin (2000) <doi:10.1177/01466216000241001>.
Author: JBrandon Duck-Mayr [aut, cre] (<https://orcid.org/0000-0002-2231-1294>), Jacob Montgomery [aut], Patrick Silva [ctb], Luwei Ying [ctb]
Maintainer: JBrandon Duck-Mayr <j.duckmayr@gmail.com>

Diff between bggum versions 1.0.1 dated 2020-01-09 and 1.0.2 dated 2020-01-19

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Package asciiSetupReader updated to version 2.3.0 with previous version 2.2.0 dated 2019-10-08

Title: Reads Fixed-Width ASCII Data Files (.txt or .dat) that Have Accompanying Setup Files (.sps or .sas)
Description: Lets you open a fixed-width ASCII file (.txt or .dat) that has an accompanying setup file (.sps or .sas). These file combinations are sometimes referred to as .txt+.sps, .txt+.sas, .dat+.sps, or .dat+.sas. This will only run in a txt-sps or txt-sas pair in which the setup file contains instructions to open that text file. It will NOT open other text files, .sav, .sas, or .por data files. Fixed-width ASCII files with setup files are common in older (pre-2000) government data.
Author: Jacob Kaplan [aut, cre] (<https://orcid.org/0000-0002-0601-0387>)
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>

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Package JuniperKernel (with last version 1.4.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-07-09 1.4.1.0
2018-04-23 1.4.0.0
2018-02-05 1.2.3.0
2018-01-16 1.2.2.0
2018-01-05 1.2.1.0
2018-01-04 1.2.0.0
2017-12-19 1.0.0.0

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