Title: Multiple Imputation by Chained Equations with Random Forests
Description: Multiple Imputation has been shown to
be a flexible method to impute missing values by
Van Buuren (2007) <doi:10.1177/0962280206074463>.
Expanding on this, random forests have been shown
to be an accurate model by Stekhoven and Buhlmann
<arXiv:1105.0828> to impute missing values in datasets.
They have the added benefits of returning out of bag
error and variable importance estimates, as well as
being simple to run in parallel.
Author: Sam Wilson [aut, cre]
Maintainer: Sam Wilson <samwilson303@gmail.com>
Diff between miceRanger versions 1.1.0 dated 2020-01-19 and 1.2.0 dated 2020-01-20
DESCRIPTION | 14 ++-- MD5 | 65 +++++++++++++---------- NAMESPACE | 5 + NEWS.md | 11 +++ R/addDatasets.R | 20 ++++--- R/addIterations.R | 23 +++++--- R/amputeData.R | 1 R/completeData.R | 15 +++-- R/miceRanger.R | 101 +++++++++++++++++++++--------------- R/plotCorrelations.R | 43 +++++++-------- R/plotDistributions.R | 34 +++--------- R/plotImputationVariance.R | 57 +++++++++++--------- R/plotModelError.R | 27 ++++----- R/plotVarConvergence.R | 31 ++++++----- R/plotVarImportance.R | 17 ++++-- R/runIterations.R | 19 +++++- data/sampleMiceDefs.RData |binary inst/doc/usingMiceRanger.html | 10 +-- man/addDatasets.Rd | 4 - man/addIterations.Rd | 4 - man/completeData.Rd | 7 +- man/miceRanger.Rd | 48 +++++++---------- man/plotCorrelations.Rd | 26 ++++----- man/plotDistributions.Rd | 7 +- man/plotImputationVariance.Rd | 8 -- man/plotModelError.Rd | 6 +- man/plotVarConvergence.Rd | 8 +- man/plotVarImportance.Rd | 4 - tests |only vignettes/mmEffectsCloseBimodal.png |only vignettes/mmEffectsFarBimodal.png |only vignettes/mmEffectsInteger.png |only vignettes/mmEffectsSkewed.png |only 33 files changed, 342 insertions(+), 273 deletions(-)
Title: A General Multivariate Imputation Framework
Description: Multivariate Expectation-Maximization (EM) based imputation framework that offers several different algorithms. These include regularisation methods like Lasso and Ridge regression, tree-based models and dimensionality reduction methods like PCA and PLS.
Author: Steffen Moritz [aut, cre] (<https://orcid.org/0000-0002-0085-1804>),
Lingbing Feng [aut],
Gen Nowak [ctb],
Alan. H. Welsh [ctb],
Terry. J. O'Neill [ctb]
Maintainer: Steffen Moritz <steffen.moritz10@gmail.com>
Diff between imputeR versions 2.1 dated 2018-10-14 and 2.2 dated 2020-01-20
imputeR-2.1/imputeR/man/rdaC.Rd |only imputeR-2.2/imputeR/DESCRIPTION | 14 +++++++------- imputeR-2.2/imputeR/MD5 | 26 +++++++++++++++----------- imputeR-2.2/imputeR/NAMESPACE | 1 - imputeR-2.2/imputeR/NEWS.md | 6 ++++++ imputeR-2.2/imputeR/R/funs.R | 1 - imputeR-2.2/imputeR/R/impute.R | 6 +----- imputeR-2.2/imputeR/R/methods.R | 33 --------------------------------- imputeR-2.2/imputeR/README.md | 3 ++- imputeR-2.2/imputeR/man/SimIm.Rd | 2 -- imputeR-2.2/imputeR/man/figures |only imputeR-2.2/imputeR/man/impute.Rd | 4 ++-- imputeR-2.2/imputeR/man/orderbox.Rd | 4 ++-- 13 files changed, 35 insertions(+), 65 deletions(-)
Title: A Simple S3 Class for Representing Vectors of Binary Data
('BLOBS')
Description: R's raw vector is useful for storing a single
binary object. What if you want to put a vector of them in a data
frame? The 'blob' package provides the blob object, a list of raw
vectors, suitable for use as a column in data frame.
Author: Hadley Wickham [aut],
Kirill Müller [cre],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between blob versions 1.2.0 dated 2019-07-09 and 1.2.1 dated 2020-01-20
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- NAMESPACE | 1 - NEWS.md | 6 ++++++ R/coerce.R | 8 +++----- R/format.R | 6 +++++- R/prettyunits.R |only man/vec_ptype2.blob.Rd | 4 ++-- tests/testthat/blob.txt | 2 +- tests/testthat/test-format.R | 4 ++-- 10 files changed, 33 insertions(+), 25 deletions(-)
Title: 3D Brain Visualization
Description: In neuroscience, 'AFNI/SUMA' is a great tool to visualize 3D brain.
However, it takes efforts to interact and share the viewer to others. In
addition, 'AFNI/SUMA' doesn't support Windows platform. In the 'EEG/iEEG'
field, it's hard to have multiple cortical electrodes mapped to a template
brain for group analysis. Therefore this package is written aimed at
providing a fast, stable, interactive and easy to share tool based on 'Three.js',
a 'WebGL' engine to render 3D objects in the web browser such that we can
display brain surfaces on webpage interactively. This package translates R
objects to JavaScript objects via 'JSON' format, and provides 'R-Shiny' interface
to manipulate geometries interactively. The visualizations can also serve as
standalone widgets that can be easily shared across different platforms.
Along with 'rave', another package developed by Beauchamp's lab at Baylor
College Medicine, this package provides solutions to easily map surface
electrodes from multiple subjects to one template 141 brain.
Author: Zhengjia Wang [aut, cre, cph],
John Magnotti [aut],
Brian Metzger [aut],
Elizabeth Nesbitt [res],
Michael Beauchamp [aut, dtc, fnd]
Maintainer: Zhengjia Wang <zhengjia.wang@rice.edu>
Diff between threeBrain versions 0.1.4 dated 2019-10-18 and 0.1.5 dated 2020-01-20
DESCRIPTION | 21 MD5 | 71 NAMESPACE | 3 NEWS.md | 18 R/aaa.R | 15 R/cache_afni_suma.R |only R/cache_fs.R |only R/cache_subject.R |only R/class_animations.R | 69 R/class_brain.R | 45 R/class_multibrain.R | 23 R/class_proxy.R |only R/fs_brain.R | 35 R/fs_brain2.R |only R/geom_abstract.R | 4 R/geom_datacube.R | 4 R/geom_datacube2.R | 4 R/geom_free.R | 55 R/loaders.R | 13 R/py_installer.R | 2 R/threejs_brain.R | 59 R/utils.R | 220 + R/zzz.R | 1 inst/htmlwidgets/lib/dipterixThreeBrain-1.0.1/dipterix.css | 35 inst/htmlwidgets/lib/dipterixThreeBrain-1.0.1/main.js | 2424 +++++++++++-- man/BlankGeom.Rd | 6 man/brain_proxy.Rd |only man/brain_setup.Rd | 10 man/check_freesurfer_path.Rd | 11 man/freesurfer_brain.Rd | 35 man/geom_freemesh.Rd | 11 man/geom_sphere.Rd | 11 man/get_digest_header.Rd |only man/import_from_freesurfer.Rd |only man/merge_brain.Rd | 9 man/read_fs_labels.Rd |only man/save_brain.Rd | 12 man/template_subject.Rd | 17 man/three_scatter.Rd | 20 man/threejsBrainOutput.Rd | 3 man/threejs_brain.Rd | 54 41 files changed, 2797 insertions(+), 523 deletions(-)
Title: Exponentially Modified Gaussian (EMG) Distribution
Description: Provides basic distribution functions for a mixture model of a Gaussian and exponential distribution.
Author: Shawn Garbett, Mark Kozdoba
Maintainer: Shawn Garbett <Shawn@Garbett.org>
Diff between emg versions 1.0.7 dated 2018-05-17 and 1.0.8 dated 2020-01-20
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 3 ++- R/emg.mle.R | 12 +++++++++--- 4 files changed, 19 insertions(+), 12 deletions(-)
Title: Simulating Survival Data from Change-Point Hazard Distributions
Description: Simulates time-to-event data
with type I right censoring using two methods: the inverse CDF
method and our proposed memoryless method. The latter method
takes advantage of the memoryless property of survival and
simulates a separate distribution between change-points. We
include two parametric distributions: exponential and Weibull.
Inverse CDF method draws on the work of Rainer Walke (2010),
<https://www.demogr.mpg.de/papers/technicalreports/tr-2010-003.pdf>.
Author: Camille Hochheimer [aut, cre]
Maintainer: Camille Hochheimer <hochheimercj@vcu.edu>
Diff between cpsurvsim versions 1.1.0 dated 2019-06-03 and 1.2.0 dated 2020-01-20
DESCRIPTION | 16 ++--- MD5 | 28 ++++----- NAMESPACE | 2 R/expfns.R | 97 ++++++++++++++++++---------------- R/weibullfns.R | 111 +++++++++++++++++++++------------------ build/vignette.rds |binary inst/doc/cpsurvsim-vignette.R | 2 inst/doc/cpsurvsim-vignette.html | 13 +++- man/cpsurvsim.Rd | 57 +++++++++----------- man/exp_cdfsim.Rd | 82 ++++++++++++++-------------- man/exp_icdf.Rd | 67 +++++++++++------------ man/exp_memsim.Rd | 80 ++++++++++++++-------------- man/weib_cdfsim.Rd | 88 +++++++++++++++--------------- man/weib_icdf.Rd | 70 ++++++++++++------------ man/weib_memsim.Rd | 88 +++++++++++++++--------------- 15 files changed, 413 insertions(+), 388 deletions(-)
Title: Variable Importance Plots
Description: A general framework for constructing variable importance plots from
various types of machine learning models in R. Aside from some standard model-
specific variable importance measures, this package also provides model-
agnostic approaches that can be applied to any supervised learning algorithm.
These include 1) an efficient permutation-based variable importance measure,
2) variable importance based on Shapley values (Strumbelj and Kononenko,
2014) <doi:10.1007/s10115-013-0679-x>, and 3) the variance-based
approach described in Greenwell et al. (2018) <arXiv:1805.04755>. A
variance-based method for quantifying the relative strength of interaction
effects is also included (see the previous reference for details).
Author: Brandon Greenwell [aut, cre] (<https://orcid.org/0000-0002-8120-0084>),
Brad Boehmke [aut] (<https://orcid.org/0000-0002-3611-8516>),
Bernie Gray [aut] (<https://orcid.org/0000-0001-9190-6032>)
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between vip versions 0.2.0 dated 2020-01-19 and 0.2.1 dated 2020-01-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/tinytest/test_pkg_h2o.R | 3 +++ tests/tinytest.R | 3 +-- 4 files changed, 10 insertions(+), 8 deletions(-)
Title: Tools for Temporal Social Network Analysis
Description: Temporal SNA tools for continuous- and discrete-time longitudinal networks having vertex, edge, and attribute dynamics stored in the 'networkDynamic' format. This work was supported by grant R01HD68395 from the National Institute of Health.
Author: Skye Bender-deMoll [aut, cre],
Martina Morris [aut],
James Moody [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between tsna versions 0.3.0 dated 2019-05-29 and 0.3.1 dated 2020-01-20
ChangeLog | 2 DESCRIPTION | 8 - MD5 | 12 - build/vignette.rds |binary inst/doc/tsna_vignette.R | 132 ++++++++-------- inst/doc/tsna_vignette.html | 352 +++++++++++++++++++++++++------------------- tests/statsWrapper_tests.R | 4 7 files changed, 284 insertions(+), 226 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Andrew Dunning [ctb] (<https://orcid.org/0000-0003-0464-5036>),
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Barret Schloerke [ctb],
Christophe Dervieux [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Jeff Allen [ctb],
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>),
Malcolm Barrett [ctb],
Rob Hyndman [ctb],
Romain Lesur [ctb],
Roy Storey [ctb],
Ruben Arslan [ctb],
Sergio Oller [ctb],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs),
Benct Philip Jonsson [ctb, cph] (pagebreak lua filter),
Albert Krewinkel [ctb, cph] (pagebreak lua filter)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 2.0 dated 2019-12-12 and 2.1 dated 2020-01-20
rmarkdown-2.0/rmarkdown/inst/rmd/h/pandoc/elevate-section-attrs.js |only rmarkdown-2.1/rmarkdown/DESCRIPTION | 12 rmarkdown-2.1/rmarkdown/MD5 | 65 +-- rmarkdown-2.1/rmarkdown/NEWS.md | 20 + rmarkdown-2.1/rmarkdown/R/html_dependencies.R | 13 rmarkdown-2.1/rmarkdown/R/html_document.R | 5 rmarkdown-2.1/rmarkdown/R/html_document_base.R | 2 rmarkdown-2.1/rmarkdown/R/output_format.R | 15 rmarkdown-2.1/rmarkdown/R/pdf_document.R | 11 rmarkdown-2.1/rmarkdown/R/render.R | 1 rmarkdown-2.1/rmarkdown/R/shiny.R | 4 rmarkdown-2.1/rmarkdown/R/slidy_presentation.R | 5 rmarkdown-2.1/rmarkdown/R/util.R | 28 - rmarkdown-2.1/rmarkdown/build/vignette.rds |binary rmarkdown-2.1/rmarkdown/inst/doc/lua-filters.html | 182 +++++----- rmarkdown-2.1/rmarkdown/inst/doc/pandoc.html | 21 - rmarkdown-2.1/rmarkdown/inst/doc/rmarkdown.html | 21 - rmarkdown-2.1/rmarkdown/inst/rmarkdown/templates/html_vignette/resources/vignette.css | 6 rmarkdown-2.1/rmarkdown/inst/rmd/h/default.html | 2 rmarkdown-2.1/rmarkdown/inst/rmd/h/pandoc/header-attrs.js |only rmarkdown-2.1/rmarkdown/inst/rmd/ioslides/default.html | 2 rmarkdown-2.1/rmarkdown/man/beamer_presentation.Rd | 3 rmarkdown-2.1/rmarkdown/man/context_document.Rd | 3 rmarkdown-2.1/rmarkdown/man/github_document.Rd | 3 rmarkdown-2.1/rmarkdown/man/html_document.Rd | 8 rmarkdown-2.1/rmarkdown/man/html_fragment.Rd | 8 rmarkdown-2.1/rmarkdown/man/html_vignette.Rd | 3 rmarkdown-2.1/rmarkdown/man/ioslides_presentation.Rd | 3 rmarkdown-2.1/rmarkdown/man/md_document.Rd | 3 rmarkdown-2.1/rmarkdown/man/output_format.Rd | 3 rmarkdown-2.1/rmarkdown/man/pdf_document.Rd | 3 rmarkdown-2.1/rmarkdown/man/powerpoint_presentation.Rd | 3 rmarkdown-2.1/rmarkdown/man/slidy_presentation.Rd | 10 rmarkdown-2.1/rmarkdown/man/word_document.Rd | 3 rmarkdown-2.1/rmarkdown/tests/testthat/test-yml-parsing.R |only 35 files changed, 273 insertions(+), 198 deletions(-)
Title: Psychometric Functions from the Waller Lab
Description: Computes fungible coefficients and Monte Carlo data. Underlying theory for these functions is described in the following publications:
Waller, N. (2008). Fungible Weights in Multiple Regression. Psychometrika, 73(4), 691-703, <DOI:10.1007/s11336-008-9066-z>.
Waller, N. & Jones, J. (2009). Locating the Extrema of Fungible Regression Weights.
Psychometrika, 74(4), 589-602, <DOI:10.1007/s11336-008-9087-7>.
Waller, N. G. (2016). Fungible Correlation Matrices:
A Method for Generating Nonsingular, Singular, and Improper Correlation Matrices for
Monte Carlo Research. Multivariate Behavioral Research, 51(4), 554-568, <DOI:10.1080/00273171.2016.1178566>.
Jones, J. A. & Waller, N. G. (2015). The normal-theory and asymptotic distribution-free (ADF)
covariance matrix of standardized regression coefficients: theoretical extensions
and finite sample behavior. Psychometrika, 80, 365-378, <DOI:10.1007/s11336-013-9380-y>.
Waller, N. G. (2018). Direct Schmid-Leiman transformations and rank-deficient loadings matrices. Psychometrika, 83, 858-870. <DOI:10.1007/s11336-017-9599-0>.
Author: Niels Waller [aut, cre],
Jeff Jones [ctb],
Casey Giordano [ctb]
Maintainer: Niels Waller <nwaller@umn.edu>
Diff between fungible versions 1.95 dated 2019-12-17 and 1.95.2 dated 2020-01-20
fungible-1.95.2/fungible/DESCRIPTION | 8 fungible-1.95.2/fungible/MD5 | 69 fungible-1.95.2/fungible/NAMESPACE | 3 fungible-1.95.2/fungible/R/Boruch70.R |only fungible-1.95.2/fungible/R/Jackson67.R |only fungible-1.95.2/fungible/R/Malmi79.R |only fungible-1.95.2/fungible/R/Thurstone41.R |only fungible-1.95.2/fungible/R/faIB.R |only fungible-1.95.2/fungible/R/faMB.R | 2071 +++++++++++++----------- fungible-1.95.2/fungible/R/print.faMB.R |only fungible-1.95.2/fungible/R/summary.faMB.R |only fungible-1.95.2/fungible/data/Boruch70.rda |only fungible-1.95.2/fungible/data/Jackson67.rda |only fungible-1.95.2/fungible/data/Malmi79.rda |only fungible-1.95.2/fungible/data/Thurstone41.rda |only fungible-1.95.2/fungible/inst/CITATION | 8 fungible-1.95.2/fungible/man/BiFAD.Rd | 3 fungible-1.95.2/fungible/man/Boruch70.Rd |only fungible-1.95.2/fungible/man/Box26.Rd | 3 fungible-1.95.2/fungible/man/GenerateBoxData.Rd | 3 fungible-1.95.2/fungible/man/Jackson67.Rd |only fungible-1.95.2/fungible/man/Ledermann.Rd | 3 fungible-1.95.2/fungible/man/Malmi79.Rd |only fungible-1.95.2/fungible/man/SLi.Rd | 3 fungible-1.95.2/fungible/man/SchmidLeiman.Rd | 3 fungible-1.95.2/fungible/man/Thurstone41.Rd |only fungible-1.95.2/fungible/man/faAlign.Rd | 3 fungible-1.95.2/fungible/man/faEKC.Rd | 3 fungible-1.95.2/fungible/man/faIB.Rd |only fungible-1.95.2/fungible/man/faMB.Rd | 335 +-- fungible-1.95.2/fungible/man/faMain.Rd | 3 fungible-1.95.2/fungible/man/faScores.Rd | 3 fungible-1.95.2/fungible/man/faSort.Rd | 3 fungible-1.95.2/fungible/man/faStandardize.Rd | 3 fungible-1.95.2/fungible/man/faX.Rd | 3 fungible-1.95.2/fungible/man/fals.Rd | 3 fungible-1.95.2/fungible/man/fapa.Rd | 3 fungible-1.95.2/fungible/man/fareg.Rd | 3 fungible-1.95.2/fungible/man/orderFactors.Rd | 3 fungible-1.95.2/fungible/man/print.faMB.Rd |only fungible-1.95.2/fungible/man/print.faMain.Rd | 3 fungible-1.95.2/fungible/man/promaxQ.Rd | 3 fungible-1.95.2/fungible/man/summary.faMB.Rd |only fungible-1.95.2/fungible/man/summary.faMain.Rd | 5 fungible-1.95/fungible/inst/news |only 45 files changed, 1432 insertions(+), 1124 deletions(-)
Title: A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Description: A rich toolkit of using the whole building simulation program
'EnergyPlus'(<https://energyplus.net>), which enables programmatic
navigation, modification of 'EnergyPlus' models and makes it less painful to
do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>)
Maintainer: Hongyuan Jia <hongyuan.jia@bears-berkeley.sg>
Diff between eplusr versions 0.10.4 dated 2019-11-05 and 0.11.0 dated 2020-01-20
DESCRIPTION | 20 LICENSE | 4 MD5 | 206 - NAMESPACE | 24 NEWS.md | 1500 ++++++------ R/assertions.R | 1116 ++++----- R/constants.R | 25 R/diagram.R | 102 R/eplusr.R | 82 R/epw.R | 1867 ++++++++------- R/err.R | 198 + R/format.R | 2429 +++++++++---------- R/group.R |only R/idd.R | 895 +++++-- R/idd_object.R | 1726 +++++++++----- R/idf.R | 3772 +++++++++++++++++-------------- R/idf_object.R | 1964 +++++++++------- R/impl-epw.R | 40 R/impl-idd.R | 15 R/impl-iddobj.R | 216 - R/impl-idf.R | 582 +++- R/impl-idfobj.R | 634 ++--- R/impl-sql.R | 985 ++++---- R/impl.R | 6 R/install.R | 307 ++ R/job.R | 1463 +++++++----- R/param.R | 1165 +++------ R/parse.R | 87 R/rdd.R | 229 + R/run.R | 234 + R/sql.R | 736 +++--- R/sysdata.rda |binary R/transition.R |only R/units.R | 1242 +++++----- R/utils.R | 70 R/validate.R | 38 R/zzz.R | 22 README.md | 276 +- build/vignette.rds |binary inst/CITATION | 18 inst/doc/eplusr.R | 770 +++--- inst/doc/eplusr.Rmd | 44 inst/doc/eplusr.html | 3200 +++++++++++++------------- inst/extdata/1ZoneUncontrolled.idf | 894 +++---- man/EplusGroupJob.Rd |only man/EplusJob.Rd | 1290 ++++++++-- man/EplusSql.Rd | 805 +++++- man/Epw.Rd | 2037 +++++++++++++--- man/Idd.Rd | 1183 ++++++++- man/IddObject.Rd | 2691 ++++++++++++++++++---- man/Idf.Rd | 4496 +++++++++++++++++++++++++++---------- man/IdfObject.Rd | 2049 +++++++++++++--- man/ParametricJob.Rd | 742 ++++-- man/as.character.IddObject.Rd | 4 man/as.character.Idf.Rd | 14 man/as.character.IdfObject.Rd | 4 man/clean_wd.Rd | 15 man/custom_validate.Rd | 22 man/download_weather.Rd | 12 man/dt_to_load.Rd |only man/empty_idf.Rd | 3 man/eplus_job.Rd | 8 man/eplus_sql.Rd | 2 man/eplusr-package.Rd | 40 man/eplusr_option.Rd | 9 man/figures/class_structure.png |binary man/figures/logo.svg | 954 +++---- man/format.IddObject.Rd | 4 man/format.Idf.Rd | 14 man/format.IdfObject.Rd | 4 man/group_job.Rd |only man/idd_object.Rd | 1 man/idf_object.Rd | 4 man/install_eplus.Rd | 76 man/level_checks.Rd | 6 man/param_job.Rd | 8 man/rdd.Rd | 20 man/rdd_to_load.Rd |only man/read_epw.Rd | 7 man/read_err.Rd | 17 man/run_model.Rd | 54 man/transition.Rd |only man/use_idd.Rd | 16 man/version_updater.Rd |only tests/testthat.R | 10 tests/testthat/files |only tests/testthat/helper-cnd.R | 12 tests/testthat/helper-copy.R | 46 tests/testthat/helper-text.R | 226 - tests/testthat/helper-transition.R |only tests/testthat/test-idfobj.R | 721 ++--- tests/testthat/test_assert.R | 202 - tests/testthat/test_epw.R | 61 tests/testthat/test_format.R | 870 +++---- tests/testthat/test_group.R |only tests/testthat/test_idd.R | 28 tests/testthat/test_iddobj.R | 504 ++-- tests/testthat/test_idf.R | 25 tests/testthat/test_impl-idd.R | 6 tests/testthat/test_impl-idf.R | 99 tests/testthat/test_install.R |only tests/testthat/test_job.R | 32 tests/testthat/test_options.R | 54 tests/testthat/test_param.R | 102 tests/testthat/test_parse.R | 61 tests/testthat/test_rdd.R |only tests/testthat/test_sql.R | 70 tests/testthat/test_transition.R |only tests/testthat/test_utils.R | 34 vignettes/eplusr.Rmd | 44 110 files changed, 31237 insertions(+), 17784 deletions(-)
Title: Learning Discrete Bayesian Network Classifiers from Data
Description: State-of-the art algorithms for learning discrete Bayesian network classifiers from data, including a number of those described in Bielza & Larranaga (2014) <doi:10.1145/2576868>, with functions for prediction, model evaluation and inspection.
Author: Mihaljevic Bojan [aut, cre],
Bielza Concha [aut],
Larranaga Pedro [aut],
Wickham Hadley [ctb] (some code extracted from memoise package)
Maintainer: Mihaljevic Bojan <bmihaljevic@fi.upm.es>
Diff between bnclassify versions 0.4.3 dated 2019-11-29 and 0.4.4 dated 2020-01-20
DESCRIPTION | 6 +- MD5 | 50 ++++++++++++------------ NEWS.md | 3 + R/wrap-gRain.R | 80 +++++++++++++++++++-------------------- build/vignette.rds |binary data/car.RData |binary data/voting.RData |binary inst/doc/methods.pdf |binary inst/doc/overview.pdf |binary inst/doc/usage.R | 6 +- inst/doc/usage.pdf |binary inst/doc/usage.rmd | 8 +-- man/bnc.Rd | 5 +- man/greedy_wrapper.Rd | 9 ++-- man/makeRLearner.bnc.Rd | 2 man/predictLearner.bnc.Rd | 2 man/trainLearner.bnc.Rd | 2 tests/testthat/test-anb-bn.R | 5 +- tests/testthat/test-cv.R | 9 ++-- tests/testthat/test-infer-anb.R | 41 ++++++++++--------- tests/testthat/test-infer.R | 44 ++++++++++++--------- tests/testthat/test-learn-aode.r | 16 ++++--- tests/testthat/test-predict.R | 16 ++++--- tests/testthat/test-update.R | 26 ++++++------ tests/testthat/test-wrap-grain.R | 54 +++++++++++++------------- vignettes/usage.rmd | 8 +-- 26 files changed, 211 insertions(+), 181 deletions(-)
Title: Exploratory Analysis of Genetic and Genomic Data
Description: Toolset for the exploration of genetic and genomic data. Adegenet
provides formal (S4) classes for storing and handling various genetic data,
including genetic markers with varying ploidy and hierarchical population
structure ('genind' class), alleles counts by populations ('genpop'), and
genome-wide SNP data ('genlight'). It also implements original multivariate
methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance
and similarity measures, and several spatial methods. A range of both empirical
and simulated datasets is also provided to illustrate various methods.
Author: Thibaut Jombart, Zhian N. Kamvar, Caitlin Collins, Roman Lustrik, Marie-
Pauline Beugin, Brian J. Knaus, Peter Solymos, Vladimir Mikryukov, Klaus Schliep, Tiago Maié, Libor Morkovsky, Ismail Ahmed, Anne Cori, Federico Calboli, RJ Ewing, Frédéric Michaud, Rebecca DeCamp
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between adegenet versions 2.1.1 dated 2018-02-02 and 2.1.2 dated 2020-01-20
ChangeLog | 64 +++++++++++----- DESCRIPTION | 12 +-- MD5 | 152 ++++++++++++++++++++-------------------- NAMESPACE | 11 ++ R/AIC.snapclust.R | 22 ----- R/AICc.snapclust.R | 22 ----- R/BIC.snapclust.R | 22 ----- R/KIC.snapclust.R | 23 ------ R/SNPbin.R | 5 + R/accessors.R | 15 ++- R/adegenet.package.R | 81 --------------------- R/basicMethods.R | 22 ++++- R/colorplot.R | 1 R/compoplot.R | 5 - R/dapc.R | 22 +++++ R/datasets.R | 46 ++++++++++++ R/export_to_mvmapper.R | 15 +-- R/find.clust.R | 14 ++- R/gengraph.R | 24 +++--- R/glFunctions.R | 6 + R/glHandle.R | 30 +++---- R/handling.R | 102 +++++++++++++++++++------- R/haploGen.R | 16 ++++ R/import.R | 66 +++++++++++------ R/loadingplot.R | 4 - R/monmonier.R | 5 + R/mutations.R | 4 + R/pairDist.R | 20 ++--- R/seqTrack.R | 9 ++ R/setAs.R | 9 ++ R/showmekittens.R | 17 ++++ R/snapclust.R | 51 ------------- R/snapclust.choose.k.R | 47 +----------- R/snpposi.R | 16 +++- R/spca.R | 16 ++++ R/xvalDapc.R | 13 +++ R/zzz.R | 32 ++++---- README.md | 2 data/H3N2.rda |binary data/dapcIllus.rda |binary data/eHGDP.rda |binary data/hybridtoy.RData |binary data/microbov.rda |binary data/nancycats.rda |binary data/rupica.RData |binary data/sim2pop.rda |binary data/spcaIllus.rda |binary data/swallowtails.rda |binary man/AIC.snapclust.Rd | 22 ----- man/AICc.Rd | 22 ----- man/BIC.snapclust.Rd | 22 ----- man/KIC.Rd | 23 ------ man/accessors.Rd | 23 +++++- man/adegenet.package.Rd | 1 man/chooseCN.Rd | 17 +++- man/compoplot.Rd | 19 +++-- man/df2genind.Rd | 23 +++++- man/export_to_mvmapper.Rd | 15 +-- man/genind.Rd | 37 ++++++--- man/genind2genpop.Rd | 9 +- man/hybridize.Rd | 13 ++- man/makefreq.Rd | 8 +- man/new.genind.Rd | 14 ++- man/new.genpop.Rd | 10 ++ man/read.PLINK.Rd | 11 ++ man/read.snp.Rd | 10 ++ man/read.structure.Rd | 19 +++-- man/scaleGen.Rd | 28 ++++--- man/seppop.Rd | 9 +- man/snapclust.Rd | 69 ++++-------------- man/snapclust.choose.k.Rd | 49 +----------- man/swallowtails.Rd |only man/tab.Rd | 8 +- man/web.Rd | 5 - tests/testthat/Rplots.pdf |only tests/testthat/test-seppop.R | 20 +++++ tests/testthat/test_accessors.R | 64 +++++++++++----- tests/testthat/test_import.R | 1 78 files changed, 853 insertions(+), 761 deletions(-)
Title: Clustering and Classification Inference with U-Statistics
Description: Clustering and classification inference for high dimension low sample size (HDLSS)
data with U-statistics. The package contains implementations of nonparametric statistical
tests for sample homogeneity, group separation, clustering, and classification of
multivariate data. The methods have high statistical power and are tailored for data
in which the dimension L is much larger than sample size n. See Gabriela B. Cybis,
Marcio Valk and Sílvia RC Lopes (2018) <doi:10.1080/00949655.2017.1374387> and Marcio
Valk and Gabriela B. Cybis (2018) <arXiv:1805.12179>.
Author: Gabriela Cybis [aut, cre],
Marcio Valk [aut],
Kazuki Yokoyama [ctb]
Maintainer: Gabriela Cybis <gcybis@gmail.com>
Diff between uclust versions 0.1.0 dated 2019-02-11 and 0.2.0 dated 2020-01-20
DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++------------ NAMESPACE | 1 + NEWS.md | 7 ++++++- R/Bn.R | 2 +- R/BnClustSig.R | 37 ++++++++++++++++++++++++------------- R/Utest.R | 2 +- R/boot_sigma.R | 3 ++- R/is_homo.R | 2 +- R/uhclust.R | 6 +++--- man/plot_uhclust.Rd | 9 +++++++-- man/rep_optimBn.Rd |only man/uclust.Rd | 1 + man/uhclust.Rd | 5 ++--- 14 files changed, 66 insertions(+), 42 deletions(-)
Title: Query 'R' Data Frames with 'SQL'
Description: Use 'SQL' 'SELECT' statements to query 'R' data frames.
Author: Ian Cook [aut, cre],
Cloudera [cph]
Maintainer: Ian Cook <ian@cloudera.com>
Diff between tidyquery versions 0.1.0 dated 2019-09-19 and 0.2.0 dated 2020-01-20
DESCRIPTION | 17 - MD5 | 36 ++- NAMESPACE | 15 + NEWS.md | 9 R/compat.R | 33 +++ R/join.R |only R/query.R | 341 ++++++++++++++++++++++++++---------- R/quote.R | 4 R/remove.R | 2 R/replace.R | 34 +-- R/show_dplyr.R |only R/unscope.R | 2 README.md | 125 +++++++++---- man/query.Rd | 10 - man/show_dplyr.Rd |only tests/testthat/setup-load_data.R | 37 ++- tests/testthat/test-dbplyr.R |only tests/testthat/test-dtplyr.R |only tests/testthat/test-errors.R |only tests/testthat/test-examples.R | 124 +++++++++++++ tests/testthat/test-joins.R |only tests/testthat/test-select_simple.R | 24 ++ tests/testthat/test-show_dplyr.R |only 23 files changed, 626 insertions(+), 187 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to help safely and efficiently organize Monte Carlo simulations in R.
The package controls the structure and back-end of Monte Carlo simulations
by utilizing a general generate-analyse-summarise strategy. The functions provided control
common simulation issues such as re-simulating non-convergent results, support parallel
back-end and MPI distributed computations, save and restore temporary files,
aggregate results across independent nodes, and provide native support for debugging.
For a pedagogical introduction to the package refer to
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>.
Author: Phil Chalmers [aut, cre] (<https://orcid.org/0000-0001-5332-2810>),
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 1.14 dated 2019-06-28 and 2.0.1 dated 2020-01-20
SimDesign-1.14/SimDesign/R/postSummarise.R |only SimDesign-1.14/SimDesign/R/subset.SimDesign.R |only SimDesign-1.14/SimDesign/man/subset.SimDesign.Rd |only SimDesign-2.0.1/SimDesign/DESCRIPTION | 13 SimDesign-2.0.1/SimDesign/MD5 | 180 SimDesign-2.0.1/SimDesign/NAMESPACE | 111 SimDesign-2.0.1/SimDesign/R/Attach.R | 150 SimDesign-2.0.1/SimDesign/R/Design.R |only SimDesign-2.0.1/SimDesign/R/Serlin2000.R | 162 SimDesign-2.0.1/SimDesign/R/SimAnova.R | 240 - SimDesign-2.0.1/SimDesign/R/SimBoot.R | 158 SimDesign-2.0.1/SimDesign/R/SimClean.R | 164 SimDesign-2.0.1/SimDesign/R/SimDesign.R | 179 SimDesign-2.0.1/SimDesign/R/SimExtract.R |only SimDesign-2.0.1/SimDesign/R/SimFunctions.R | 294 - SimDesign-2.0.1/SimDesign/R/SimResults.R | 162 SimDesign-2.0.1/SimDesign/R/SimShiny.R | 345 - SimDesign-2.0.1/SimDesign/R/add_missing.R | 205 - SimDesign-2.0.1/SimDesign/R/aggregate_simulations.R | 228 - SimDesign-2.0.1/SimDesign/R/analysis.R | 314 - SimDesign-2.0.1/SimDesign/R/boot_predict.R | 260 - SimDesign-2.0.1/SimDesign/R/functions.R | 736 +-- SimDesign-2.0.1/SimDesign/R/rbind.SimDesign.R |only SimDesign-2.0.1/SimDesign/R/reSummarise.R |only SimDesign-2.0.1/SimDesign/R/rejectionSampling.R | 355 - SimDesign-2.0.1/SimDesign/R/rgenerate.R | 1866 ++++----- SimDesign-2.0.1/SimDesign/R/rtruncate.R | 192 - SimDesign-2.0.1/SimDesign/R/runSimulation.R | 2247 +++++------ SimDesign-2.0.1/SimDesign/R/summary_functions.R | 1723 ++++----- SimDesign-2.0.1/SimDesign/R/util.R | 232 - SimDesign-2.0.1/SimDesign/R/zzz.R | 8 SimDesign-2.0.1/SimDesign/build/partial.rdb |binary SimDesign-2.0.1/SimDesign/build/vignette.rds |binary SimDesign-2.0.1/SimDesign/inst/doc/Catch_errors.R | 141 SimDesign-2.0.1/SimDesign/inst/doc/Catch_errors.Rmd | 259 - SimDesign-2.0.1/SimDesign/inst/doc/Catch_errors.html | 2091 +++++++++-- SimDesign-2.0.1/SimDesign/inst/doc/Fixed_obj_fun.R | 172 SimDesign-2.0.1/SimDesign/inst/doc/Fixed_obj_fun.Rmd | 275 - SimDesign-2.0.1/SimDesign/inst/doc/Fixed_obj_fun.html | 2015 +++++++++- SimDesign-2.0.1/SimDesign/inst/doc/Parallel-computing.R | 94 SimDesign-2.0.1/SimDesign/inst/doc/Parallel-computing.Rmd | 297 - SimDesign-2.0.1/SimDesign/inst/doc/Parallel-computing.html | 2005 ++++++++-- SimDesign-2.0.1/SimDesign/inst/doc/Saving-results.R | 218 - SimDesign-2.0.1/SimDesign/inst/doc/Saving-results.Rmd | 378 +- SimDesign-2.0.1/SimDesign/inst/doc/Saving-results.html | 2367 +++++++++--- SimDesign-2.0.1/SimDesign/inst/doc/SimDesign-intro.R | 192 - SimDesign-2.0.1/SimDesign/inst/doc/SimDesign-intro.Rmd | 547 +- SimDesign-2.0.1/SimDesign/inst/doc/SimDesign-intro.html | 2456 +++++++++---- SimDesign-2.0.1/SimDesign/man/Analyse.Rd | 150 SimDesign-2.0.1/SimDesign/man/Attach.Rd | 147 SimDesign-2.0.1/SimDesign/man/BF_sim.Rd | 70 SimDesign-2.0.1/SimDesign/man/BF_sim_alternative.Rd | 70 SimDesign-2.0.1/SimDesign/man/ECR.Rd | 194 - SimDesign-2.0.1/SimDesign/man/EDR.Rd | 97 SimDesign-2.0.1/SimDesign/man/Generate.Rd | 186 SimDesign-2.0.1/SimDesign/man/IRMSE.Rd | 175 SimDesign-2.0.1/SimDesign/man/MAE.Rd | 143 SimDesign-2.0.1/SimDesign/man/MSRSE.Rd | 165 SimDesign-2.0.1/SimDesign/man/RAB.Rd | 89 SimDesign-2.0.1/SimDesign/man/RD.Rd | 110 SimDesign-2.0.1/SimDesign/man/RE.Rd | 103 SimDesign-2.0.1/SimDesign/man/RMSE.Rd | 191 - SimDesign-2.0.1/SimDesign/man/Serlin2000.Rd | 116 SimDesign-2.0.1/SimDesign/man/SimAnova.Rd | 104 SimDesign-2.0.1/SimDesign/man/SimBoot.Rd | 140 SimDesign-2.0.1/SimDesign/man/SimClean.Rd | 133 SimDesign-2.0.1/SimDesign/man/SimDesign.Rd | 63 SimDesign-2.0.1/SimDesign/man/SimExtract.Rd |only SimDesign-2.0.1/SimDesign/man/SimFunctions.Rd | 140 SimDesign-2.0.1/SimDesign/man/SimResults.Rd | 136 SimDesign-2.0.1/SimDesign/man/SimShiny.Rd | 190 - SimDesign-2.0.1/SimDesign/man/Summarise.Rd | 107 SimDesign-2.0.1/SimDesign/man/add_missing.Rd | 204 - SimDesign-2.0.1/SimDesign/man/aggregate_simulations.Rd | 125 SimDesign-2.0.1/SimDesign/man/bias.Rd | 205 - SimDesign-2.0.1/SimDesign/man/boot_predict.Rd | 229 - SimDesign-2.0.1/SimDesign/man/createDesign.Rd |only SimDesign-2.0.1/SimDesign/man/quiet.Rd | 92 SimDesign-2.0.1/SimDesign/man/rHeadrick.Rd | 184 SimDesign-2.0.1/SimDesign/man/rValeMaurelli.Rd | 128 SimDesign-2.0.1/SimDesign/man/rbind.SimDesign.Rd |only SimDesign-2.0.1/SimDesign/man/reSummarise.Rd | 179 SimDesign-2.0.1/SimDesign/man/rejectionSampling.Rd | 290 - SimDesign-2.0.1/SimDesign/man/rint.Rd | 110 SimDesign-2.0.1/SimDesign/man/rinvWishart.Rd | 94 SimDesign-2.0.1/SimDesign/man/rmgh.Rd | 114 SimDesign-2.0.1/SimDesign/man/rmvnorm.Rd | 90 SimDesign-2.0.1/SimDesign/man/rmvt.Rd | 102 SimDesign-2.0.1/SimDesign/man/rtruncate.Rd | 164 SimDesign-2.0.1/SimDesign/man/runSimulation.Rd | 1411 +++---- SimDesign-2.0.1/SimDesign/tests/tests/test-SimDesign.R | 1049 ++--- SimDesign-2.0.1/SimDesign/vignettes/Catch_errors.Rmd | 259 - SimDesign-2.0.1/SimDesign/vignettes/Fixed_obj_fun.Rmd | 275 - SimDesign-2.0.1/SimDesign/vignettes/Parallel-computing.Rmd | 297 - SimDesign-2.0.1/SimDesign/vignettes/Saving-results.Rmd | 378 +- SimDesign-2.0.1/SimDesign/vignettes/SimDesign-intro.Rmd | 547 +- 96 files changed, 20211 insertions(+), 13365 deletions(-)
Title: Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Description: Reading and writing data stored by some versions of
'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',
and for reading and writing some 'dBase' files.
Author: R Core Team [aut, cph, cre],
Roger Bivand [ctb, cph],
Vincent J. Carey [ctb, cph],
Saikat DebRoy [ctb, cph],
Stephen Eglen [ctb, cph],
Rajarshi Guha [ctb, cph],
Swetlana Herbrandt [ctb],
Nicholas Lewin-Koh [ctb, cph],
Mark Myatt [ctb, cph],
Michael Nelson [ctb],
Ben Pfaff [ctb],
Brian Quistorff [ctb],
Frank Warmerdam [ctb, cph],
Stephen Weigand [ctb, cph],
Free Software Foundation, Inc. [cph]
Maintainer: R Core Team <R-core@R-project.org>
Diff between foreign versions 0.8-74 dated 2019-12-26 and 0.8-75 dated 2020-01-20
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/dbfopen.c | 10 ++++++++++ src/stataread.c | 2 +- 5 files changed, 25 insertions(+), 9 deletions(-)
Title: Stable and Interpretable RUle Set
Description: A regression and classification algorithm based on random forests, which takes the form of a short list of rules. SIRUS combines the simplicity of decision trees with the predictivity of random forests for problems with low order interactions. The core aggregation principle of random forests is kept, but instead of aggregating predictions, SIRUS selects the most frequent nodes of the forest to form a stable rule ensemble model. The algorithm is fully described in the following article: Benard C., Biau G., da Veiga S., Scornet E. (2019) <arXiv:1908.06852>. This R package is a fork from the project ranger (<https://github.com/imbs-hl/ranger>).
Author: Clement Benard [aut, cre], Marvin N. Wright [ctb, cph]
Maintainer: Clement Benard <clement.benard@safrangroup.com>
Diff between sirus versions 0.1.2 dated 2019-09-02 and 0.2.1 dated 2020-01-20
DESCRIPTION | 16 MD5 | 26 - NAMESPACE | 2 R/sirus.R | 344 +++++++++++++--- R/sirus_utility.R | 899 +++++++++++++++++++++++--------------------- README.md | 8 man/sirus.cv.Rd | 27 - man/sirus.fit.Rd | 21 - man/sirus.plot.cv.Rd | 8 man/sirus.predict.Rd | 2 src/Forest.cpp | 51 -- src/Tree.cpp | 21 + src/Tree.h | 6 tests/testthat/test_sirus.R | 2 14 files changed, 848 insertions(+), 585 deletions(-)
Title: Analysis of Large-Scale Toxico-Genomic Data
Description: Contains a set of functions to perform large-scale analysis of
toxico-genomic data. A member of the BHK lab's Gx suite of software, this
package provides a standardized data structure to hold information relevant
to annotation, visualization and statistical analysis of toxico-genomic data.
This package is in early release, and more features will be added over the
next few months.
Author: Sisira Nair [aut],
Esther Yoo [aut],
Christopher Eeles [aut],
Amy Tang [aut],
Nehme El-Hachem [aut],
Petr Smirnov [aut],
Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Diff between ToxicoGx versions 0.1.0 dated 2020-01-14 and 0.1.1 dated 2020-01-20
ToxicoGx-0.1.0/ToxicoGx/NEWS |only ToxicoGx-0.1.0/ToxicoGx/vignettes/output |only ToxicoGx-0.1.1/ToxicoGx/DESCRIPTION | 12 - ToxicoGx-0.1.1/ToxicoGx/MD5 | 31 +--- ToxicoGx-0.1.1/ToxicoGx/NEWS.md | 20 ++- ToxicoGx-0.1.1/ToxicoGx/build/vignette.rds |binary ToxicoGx-0.1.1/ToxicoGx/data/TGGATESsmall.rda |binary ToxicoGx-0.1.1/ToxicoGx/inst/doc/toxicoGxCaseStudies.R | 14 +- ToxicoGx-0.1.1/ToxicoGx/inst/doc/toxicoGxCaseStudies.Rmd | 87 ++++++-------- ToxicoGx-0.1.1/ToxicoGx/inst/doc/toxicoGxCaseStudies.pdf |binary ToxicoGx-0.1.1/ToxicoGx/vignettes/toxicoGxCaseStudies.Rmd | 87 ++++++-------- 11 files changed, 117 insertions(+), 134 deletions(-)
Title: Genome Wide Association Studies
Description: Fast single trait Genome Wide Association Studies (GWAS). One of a
series of statistical genetic packages for streamlining the analysis of
typical plant breeding experiments developed by Biometris.
Author: Bart-Jan van Rossum [aut, cre],
Willem Kruijer [aut] (<https://orcid.org/0000-0001-7179-1733>),
Fred van Eeuwijk [ctb] (<https://orcid.org/0000-0003-3672-2921>),
Martin Boer [ctb],
Marcos Malosetti [ctb] (<https://orcid.org/0000-0002-8150-1397>),
Daniela Bustos-Korts [ctb] (<https://orcid.org/0000-0003-3827-6726>),
Emilie Millet [ctb] (<https://orcid.org/0000-0002-2913-4892>),
Joao Paulo [ctb] (<https://orcid.org/0000-0002-4180-0763>),
Maikel Verouden [ctb] (<https://orcid.org/0000-0002-4893-3323>),
Ron Wehrens [ctb] (<https://orcid.org/0000-0002-8798-5599>),
Choazhi Zheng [ctb] (<https://orcid.org/0000-0001-6030-3933>)
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenGWAS versions 1.0.1 dated 2020-01-19 and 1.0.2 dated 2020-01-20
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/GWAS.html | 46 ++++++++++++++++++++++++---------------------- src/EMMA.cpp | 11 ++++++----- 5 files changed, 42 insertions(+), 35 deletions(-)
Title: Setup and connect to 'OpenTripPlanner'
Description: Setup and connect to 'OpenTripPlanner' (OTP) <http://www.opentripplanner.org/>.
OTP is an open source platform for multi-modal and multi-agency
journey planning written in 'Java'. The package allows you to manage a local version or
connect to remote OTP server.
This package has been peer-reviewed by rOpenSci (v. 0.2.0.0).
Author: Malcolm Morgan [aut, cre] (<https://orcid.org/0000-0002-9488-9183>),
Marcus Young [aut] (<https://orcid.org/0000-0003-4627-1116>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>),
Layik Hama [ctb] (<https://orcid.org/0000-0003-1912-4890>)
Maintainer: Malcolm Morgan <m.morgan1@leeds.ac.uk>
Diff between opentripplanner versions 0.2.0.3 dated 2020-01-19 and 0.2.0.4 dated 2020-01-20
DESCRIPTION | 8 MD5 | 72 - NAMESPACE | 26 NEWS.md |only R/opentripplanner-package.R | 16 R/otp-config.R | 1396 +++++++++++++++---------------- R/otp-connect.R | 350 +++---- R/otp-download.R | 140 +-- R/otp-geocode.R | 200 ++-- R/otp-isochrone.R | 208 ++-- R/otp-plan.R | 1366 +++++++++++++++--------------- R/otp-setup.R | 694 +++++++-------- README.md | 251 ++--- build/vignette.rds |binary inst/CITATION | 40 inst/doc/advanced_features.R | 220 ++-- inst/doc/advanced_features.Rmd | 456 +++++----- inst/doc/advanced_features.html | 981 ++++++++++----------- inst/doc/known_issues.Rmd | 126 +- inst/doc/known_issues.html | 594 ++++++------- inst/doc/opentripplanner.R | 124 +- inst/doc/opentripplanner.Rmd | 468 +++++----- inst/doc/opentripplanner.html | 949 ++++++++++----------- inst/doc/prerequisites.R | 4 inst/doc/prerequisites.Rmd | 214 ++-- inst/doc/prerequisites.html | 646 +++++++------- tests/testthat.R | 8 tests/testthat/lucene |only tests/testthat/test_01_internal_funcs.R | 324 +++---- tests/testthat/test_02_without_OTP.R | 414 ++++----- tests/testthat/test_03_with_OTP.R | 442 ++++----- tests/testthat/test_04_with_public_API.R | 88 - vignettes/advanced_features.Rmd | 456 +++++----- vignettes/known_issues.Rmd | 126 +- vignettes/opentripplanner.Rmd | 468 +++++----- vignettes/prerequisites.Rmd | 214 ++-- 36 files changed, 6049 insertions(+), 6040 deletions(-)
More information about opentripplanner at CRAN
Permanent link
Title: Track Changes in Data
Description: A framework that allows for easy logging of changes in data.
Main features: start tracking changes by adding a single line of code to
an existing script. Track changes in multiple datasets, using multiple
loggers. Add custom-built loggers or use loggers offered by other
packages.
Author: Mark van der Loo [aut, cre] (<https://orcid.org/0000-0002-9807-4686>)
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between lumberjack versions 1.1.2 dated 2020-01-09 and 1.1.3 dated 2020-01-20
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS | 3 +++ R/cellwise.R | 6 +++--- R/expression_logger.R | 6 +++--- R/filedump.R | 28 ++++++++++++++-------------- R/simple.R | 12 ++++++------ inst/doc/using_lumberjack.pdf |binary inst/tinytest/test_cellwise.R | 2 ++ inst/tinytest/test_expressionlogger.R | 1 + inst/tinytest/test_filedump.R | 2 ++ inst/tinytest/test_simple.R | 1 + 12 files changed, 49 insertions(+), 40 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.umass.edu/landeco/research/fragstats/fragstats.html>)
and new ones from the current literature on landscape metrics.
This package supports 'raster' spatial objects and takes
RasterLayer, RasterStacks, RasterBricks or lists of RasterLayer from the
'raster' package as input arguments. It further provides utility functions
to visualize patches, select metrics and building blocks to develop new
metrics.
Author: Maximillian H.K. Hesselbarth [aut, cre]
(<https://orcid.org/0000-0003-1125-9918>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
Sebastian Hanss [aut] (<https://orcid.org/0000-0002-3990-4897>),
Laura J. Graham [ctb] (Input on package structure),
Jeffrey Hollister [ctb] (Input on package structure),
Kimberly A. With [ctb] (Input on package structure),
Florian Privé [ctb] (Original author of underlying C++ code for
get_nearestneighbour() function),
Matt Strimas-Mackey [ctb] (Bugfix in sample_metrics())
Maintainer: Maximillian H.K. Hesselbarth <maximilian.hesselbarth@uni-goettingen.de>
Diff between landscapemetrics versions 1.4.1 dated 2020-01-12 and 1.4.2 dated 2020-01-20
DESCRIPTION | 6 MD5 | 708 ++-- NAMESPACE | 1886 +++++----- NEWS.md | 306 - R/RcppExports.R | 210 - R/calculate_correlation.R | 364 +- R/calculate_lsm.R | 928 ++--- R/check_landscape.R | 336 - R/construct_buffer.R | 374 +- R/data.R | 250 - R/data_info.R | 82 R/extract_lsm.R | 866 ++-- R/get_adjacencies.R | 386 +- R/get_boundaries.R | 524 +- R/get_circumscribingcircle.R | 402 +- R/get_nearestneighbour.R | 452 +- R/get_patches.R | 672 +-- R/get_unique_values.R | 500 +- R/landscapemetrics-package.R | 110 R/list_lsm.R | 410 +- R/lsm_c_ai.R | 358 +- R/lsm_c_area_cv.R | 310 - R/lsm_c_area_mn.R | 312 - R/lsm_c_area_sd.R | 310 - R/lsm_c_ca.R | 308 - R/lsm_c_cai_cv.R | 348 - R/lsm_c_cai_mn.R | 342 - R/lsm_c_cai_sd.R | 346 - R/lsm_c_circle_cv.R | 330 - R/lsm_c_circle_mn.R | 324 - R/lsm_c_circle_sd.R | 324 - R/lsm_c_clumpy.R | 400 +- R/lsm_c_cohesion.R | 372 +- R/lsm_c_contig_cv.R | 328 - R/lsm_c_contig_mn.R | 326 - R/lsm_c_contig_sd.R | 328 - R/lsm_c_core_cv.R | 342 - R/lsm_c_core_mn.R | 336 - R/lsm_c_core_sd.R | 340 - R/lsm_c_cpland.R | 368 +- R/lsm_c_dcad.R | 364 +- R/lsm_c_dcore_cv.R | 346 - R/lsm_c_dcore_mn.R | 338 - R/lsm_c_dcore_sd.R | 348 - R/lsm_c_division.R | 326 - R/lsm_c_ed.R | 372 +- R/lsm_c_enn_cv.R | 334 - R/lsm_c_enn_mn.R | 336 - R/lsm_c_enn_sd.R | 336 - R/lsm_c_frac_cv.R | 318 - R/lsm_c_frac_mn.R | 310 - R/lsm_c_frac_sd.R | 316 - R/lsm_c_gyrate_cv.R | 320 - R/lsm_c_gyrate_mn.R | 320 - R/lsm_c_gyrate_sd.R | 318 - R/lsm_c_iji.R | 362 +- R/lsm_c_lpi.R | 314 - R/lsm_c_lsi.R | 376 +- R/lsm_c_mesh.R | 330 - R/lsm_c_ndca.R | 344 - R/lsm_c_nlsi.R | 400 +- R/lsm_c_np.R | 324 - R/lsm_c_pafrac.R | 412 +- R/lsm_c_para_cv.R | 310 - R/lsm_c_para_mn.R | 310 - R/lsm_c_para_sd.R | 312 - R/lsm_c_pd.R | 330 - R/lsm_c_pladj.R | 312 - R/lsm_c_pland.R | 302 - R/lsm_c_shape_cv.R | 320 - R/lsm_c_shape_mn.R | 318 - R/lsm_c_shape_sd.R | 320 - R/lsm_c_split.R | 326 - R/lsm_c_tca.R | 338 - R/lsm_c_te.R | 503 +- R/lsm_l_ai.R | 316 - R/lsm_l_area_cv.R | 308 - R/lsm_l_area_mn.R | 314 - R/lsm_l_area_sd.R | 312 - R/lsm_l_cai_cv.R | 376 +- R/lsm_l_cai_mn.R | 372 +- R/lsm_l_cai_sd.R | 376 +- R/lsm_l_circle_cv.R | 322 - R/lsm_l_circle_mn.R | 318 - R/lsm_l_circle_sd.R | 324 - R/lsm_l_cohesion.R | 344 - R/lsm_l_condent.R | 368 +- R/lsm_l_contag.R | 360 +- R/lsm_l_contig_cv.R | 328 - R/lsm_l_contig_mn.R | 326 - R/lsm_l_contig_sd.R | 328 - R/lsm_l_core_cv.R | 370 +- R/lsm_l_core_mn.R | 366 +- R/lsm_l_core_sd.R | 368 +- R/lsm_l_dcad.R | 388 +- R/lsm_l_dcore_cv.R | 376 +- R/lsm_l_dcore_mn.R | 370 +- R/lsm_l_dcore_sd.R | 374 +- R/lsm_l_division.R | 320 - R/lsm_l_ed.R | 362 +- R/lsm_l_enn_cv.R | 332 - R/lsm_l_enn_mn.R | 332 - R/lsm_l_enn_sd.R | 332 - R/lsm_l_ent.R | 322 - R/lsm_l_frac_cv.R | 316 - R/lsm_l_frac_mn.R | 314 - R/lsm_l_frac_sd.R | 314 - R/lsm_l_gyrate_cv.R | 322 - R/lsm_l_gyrate_mn.R | 318 - R/lsm_l_gyrate_sd.R | 320 - R/lsm_l_iji.R | 366 +- R/lsm_l_joinent.R | 350 - R/lsm_l_lpi.R | 308 - R/lsm_l_lsi.R | 368 +- R/lsm_l_mesh.R | 318 - R/lsm_l_msidi.R | 320 - R/lsm_l_msiei.R | 310 - R/lsm_l_mutinf.R | 366 +- R/lsm_l_ndca.R | 368 +- R/lsm_l_np.R | 290 - R/lsm_l_pafrac.R | 396 +- R/lsm_l_para_cv.R | 310 - R/lsm_l_para_mn.R | 310 - R/lsm_l_para_sd.R | 310 - R/lsm_l_pd.R | 336 - R/lsm_l_pladj.R | 302 - R/lsm_l_pr.R | 266 - R/lsm_l_prd.R | 306 - R/lsm_l_rpr.R | 328 - R/lsm_l_shape_cv.R | 318 - R/lsm_l_shape_mn.R | 316 - R/lsm_l_shape_sd.R | 316 - R/lsm_l_shdi.R | 294 - R/lsm_l_shei.R | 294 - R/lsm_l_sidi.R | 302 - R/lsm_l_siei.R | 306 - R/lsm_l_split.R | 314 - R/lsm_l_ta.R | 294 - R/lsm_l_tca.R | 364 +- R/lsm_l_te.R | 397 +- R/lsm_p_area.R | 366 +- R/lsm_p_cai.R | 418 +- R/lsm_p_circle.R | 462 +- R/lsm_p_contig.R | 444 +- R/lsm_p_core.R | 474 +- R/lsm_p_enn.R | 482 +- R/lsm_p_frac.R | 356 +- R/lsm_p_gyrate.R | 422 +- R/lsm_p_ncore.R | 578 +-- R/lsm_p_para.R | 340 - R/lsm_p_perim.R | 446 +- R/lsm_p_shape.R | 382 +- R/matrix_to_raster.R | 164 R/onUnload.R | 16 R/options_landscapemetrics.R | 64 R/pad_raster.R | 548 +-- R/proj_info.R | 104 R/raster_to_points.R | 270 - R/sample_lsm.R | 1120 +++--- R/scale_sample.R | 794 ++-- R/scale_window.R | 746 ++-- R/show_cores.R | 578 +-- R/show_correlation.R | 588 +-- R/show_lsm.R | 624 +-- R/show_patches.R | 446 +- R/spatialize_lsm.R | 632 +-- R/unpad_raster.R | 470 +- R/window_lsm.R | 1222 +++--- build/vignette.rds |binary inst/CITATION | 30 inst/doc/getstarted.R | 190 - inst/doc/getstarted.Rmd | 364 +- inst/doc/getstarted.html | 1196 +++--- man/data_info.Rd | 2 man/figures/REAsDME-unnamed-chunk-1-1.png |binary man/fragstats_class_augusta_nlcd.Rd | 2 man/fragstats_class_landscape.Rd | 2 man/fragstats_class_podlasie.Rd | 2 man/fragstats_patch_augusta_nlcd.Rd | 2 man/fragstats_patch_landscape.Rd | 2 man/fragstats_patch_podlasie.Rd | 2 man/landscape.Rd | 2 man/podlasie_ccilc.Rd | 2 man/proj_info.Rd | 2 man/rcpp_xy_from_matrix.Rd | 2 man/sample_lsm.Rd | 332 - tests/testthat.R | 10 tests/testthat/helper-brick.R | 8 tests/testthat/helper-landscapes.R | 42 tests/testthat/helper-points.R | 36 tests/testthat/test-calculate-lsm.R | 262 - tests/testthat/test-calculate_correlation.R | 140 tests/testthat/test-check-landscape.R | 160 tests/testthat/test-construct-buffer.R | 80 tests/testthat/test-different-classes.R | 28 tests/testthat/test-extract-lsm.R | 272 - tests/testthat/test-get-adjacencies.R | 166 tests/testthat/test-get-boundaries.R | 102 tests/testthat/test-get-circumscribungcircle.R | 146 tests/testthat/test-get-nearestneighbour.R | 66 tests/testthat/test-get-patches.R | 58 tests/testthat/test-get-unique-values.R | 182 - tests/testthat/test-list-lsm.R | 182 - tests/testthat/test-lsm-c-ai.R | 68 tests/testthat/test-lsm-c-area-cv.R | 48 tests/testthat/test-lsm-c-area-mn.R | 50 tests/testthat/test-lsm-c-area-sd.R | 48 tests/testthat/test-lsm-c-ca.R | 52 tests/testthat/test-lsm-c-cai-cv.R | 50 tests/testthat/test-lsm-c-cai-mn.R | 50 tests/testthat/test-lsm-c-cai-sd.R | 46 tests/testthat/test-lsm-c-circle-cv.R | 52 tests/testthat/test-lsm-c-circle-mn.R | 48 tests/testthat/test-lsm-c-circle-sd.R | 48 tests/testthat/test-lsm-c-clumpy.R | 48 tests/testthat/test-lsm-c-cohesion.R | 50 tests/testthat/test-lsm-c-contig-cv.R | 50 tests/testthat/test-lsm-c-contig-mn.R | 50 tests/testthat/test-lsm-c-contig-sd.R | 50 tests/testthat/test-lsm-c-core-cv.R | 46 tests/testthat/test-lsm-c-core-mn.R | 46 tests/testthat/test-lsm-c-core-sd.R | 46 tests/testthat/test-lsm-c-cpland.R | 48 tests/testthat/test-lsm-c-dcad.R | 48 tests/testthat/test-lsm-c-dcore_cv.R | 46 tests/testthat/test-lsm-c-dcore_mn.R | 46 tests/testthat/test-lsm-c-dcore_sd.R | 46 tests/testthat/test-lsm-c-division.R | 48 tests/testthat/test-lsm-c-ed.R | 48 tests/testthat/test-lsm-c-enn-cv.R | 46 tests/testthat/test-lsm-c-enn-mn.R | 46 tests/testthat/test-lsm-c-enn-sd.R | 46 tests/testthat/test-lsm-c-frac-cv.R | 46 tests/testthat/test-lsm-c-frac-mn.R | 46 tests/testthat/test-lsm-c-frac-sd.R | 46 tests/testthat/test-lsm-c-gyrate-cv.R | 46 tests/testthat/test-lsm-c-gyrate-mn.R | 46 tests/testthat/test-lsm-c-gyrate-sd.R | 46 tests/testthat/test-lsm-c-iji.R | 68 tests/testthat/test-lsm-c-lpi.R | 48 tests/testthat/test-lsm-c-lsi.R | 48 tests/testthat/test-lsm-c-mesh.R | 48 tests/testthat/test-lsm-c-ndca.R | 48 tests/testthat/test-lsm-c-nlsi.R | 48 tests/testthat/test-lsm-c-np.R | 48 tests/testthat/test-lsm-c-pafrac.R | 76 tests/testthat/test-lsm-c-para-cv.R | 46 tests/testthat/test-lsm-c-para-mn.R | 46 tests/testthat/test-lsm-c-para-sd.R | 46 tests/testthat/test-lsm-c-pd.R | 48 tests/testthat/test-lsm-c-pladj.R | 48 tests/testthat/test-lsm-c-pland.R | 48 tests/testthat/test-lsm-c-shape-cv.R | 46 tests/testthat/test-lsm-c-shape-mn.R | 46 tests/testthat/test-lsm-c-shape-sd.R | 46 tests/testthat/test-lsm-c-split.R | 48 tests/testthat/test-lsm-c-tca.R | 48 tests/testthat/test-lsm-c-te.R | 84 tests/testthat/test-lsm-l-ai.R | 48 tests/testthat/test-lsm-l-area-cv.R | 46 tests/testthat/test-lsm-l-area-mn.R | 50 tests/testthat/test-lsm-l-area-sd.R | 50 tests/testthat/test-lsm-l-cai-cv.R | 50 tests/testthat/test-lsm-l-cai-mn.R | 50 tests/testthat/test-lsm-l-cai-sd.R | 50 tests/testthat/test-lsm-l-circle-cv.R | 50 tests/testthat/test-lsm-l-circle-mn.R | 50 tests/testthat/test-lsm-l-circle-sd.R | 50 tests/testthat/test-lsm-l-cohesion.R | 48 tests/testthat/test-lsm-l-condent.R | 48 tests/testthat/test-lsm-l-contag.R | 66 tests/testthat/test-lsm-l-contig-cv.R | 46 tests/testthat/test-lsm-l-contig-mn.R | 46 tests/testthat/test-lsm-l-contig-sd.R | 46 tests/testthat/test-lsm-l-core-cv.R | 50 tests/testthat/test-lsm-l-core-mn.R | 50 tests/testthat/test-lsm-l-core-sd.R | 50 tests/testthat/test-lsm-l-dcad.R | 48 tests/testthat/test-lsm-l-dcore-cv.R | 50 tests/testthat/test-lsm-l-dcore-mn.R | 50 tests/testthat/test-lsm-l-dcore-sd.R | 50 tests/testthat/test-lsm-l-division.R | 48 tests/testthat/test-lsm-l-ed.R | 48 tests/testthat/test-lsm-l-enn-cv.R | 50 tests/testthat/test-lsm-l-enn-mn.R | 50 tests/testthat/test-lsm-l-enn-sd.R | 50 tests/testthat/test-lsm-l-ent.R | 48 tests/testthat/test-lsm-l-frac-cv.R | 46 tests/testthat/test-lsm-l-frac-mn.R | 46 tests/testthat/test-lsm-l-frac-sd.R | 46 tests/testthat/test-lsm-l-gyrate-cv.R | 46 tests/testthat/test-lsm-l-gyrate-mn.R | 46 tests/testthat/test-lsm-l-gyrate-sd.R | 48 tests/testthat/test-lsm-l-iji.R | 68 tests/testthat/test-lsm-l-joinent.R | 48 tests/testthat/test-lsm-l-lpi.R | 48 tests/testthat/test-lsm-l-lsi.R | 48 tests/testthat/test-lsm-l-mesh.R | 48 tests/testthat/test-lsm-l-msidi.R | 48 tests/testthat/test-lsm-l-msiei.R | 48 tests/testthat/test-lsm-l-mutinf.R | 48 tests/testthat/test-lsm-l-ndca.R | 48 tests/testthat/test-lsm-l-np.R | 48 tests/testthat/test-lsm-l-pafrac.R | 66 tests/testthat/test-lsm-l-para-cv.R | 46 tests/testthat/test-lsm-l-para-mn.R | 46 tests/testthat/test-lsm-l-para-sd.R | 46 tests/testthat/test-lsm-l-pd.R | 48 tests/testthat/test-lsm-l-pladj.R | 48 tests/testthat/test-lsm-l-pr.R | 48 tests/testthat/test-lsm-l-prd.R | 48 tests/testthat/test-lsm-l-rpr.R | 48 tests/testthat/test-lsm-l-shape-cv.R | 46 tests/testthat/test-lsm-l-shape-mn.R | 46 tests/testthat/test-lsm-l-shape-sd.R | 46 tests/testthat/test-lsm-l-shdi.R | 48 tests/testthat/test-lsm-l-shei.R | 48 tests/testthat/test-lsm-l-sidi.R | 48 tests/testthat/test-lsm-l-siei.R | 48 tests/testthat/test-lsm-l-split.R | 48 tests/testthat/test-lsm-l-ta.R | 48 tests/testthat/test-lsm-l-tca.R | 48 tests/testthat/test-lsm-l-te.R | 90 tests/testthat/test-lsm-p-area.R | 50 tests/testthat/test-lsm-p-cai.R | 46 tests/testthat/test-lsm-p-circle.R | 54 tests/testthat/test-lsm-p-contig.R | 50 tests/testthat/test-lsm-p-core.R | 68 tests/testthat/test-lsm-p-enn.R | 50 tests/testthat/test-lsm-p-frac.R | 50 tests/testthat/test-lsm-p-gyrate.R | 50 tests/testthat/test-lsm-p-nca.R | 50 tests/testthat/test-lsm-p-para.R | 50 tests/testthat/test-lsm-p-perim.R | 54 tests/testthat/test-lsm-p-shape.R | 48 tests/testthat/test-matrix-to-raster.R | 96 tests/testthat/test-options-landscapemetrics.R | 26 tests/testthat/test-pad-raster.R | 100 tests/testthat/test-raster-to-points.R | 94 tests/testthat/test-rcpp-get-coocurrence-matrix.R | 204 - tests/testthat/test-rcpp-get-entropy.R | 46 tests/testthat/test-rcpp_ccl.R | 24 tests/testthat/test-sample-lsm.R | 428 +- tests/testthat/test-scale-sample.R | 200 - tests/testthat/test-scale-window.R | 172 tests/testthat/test-show-cores.R | 106 tests/testthat/test-show-correlation.R | 118 tests/testthat/test-show-lsm.R | 96 tests/testthat/test-show-patches.R | 74 tests/testthat/test-spatialize-lsm.R | 152 tests/testthat/test-unique-values.R | 26 tests/testthat/test-unpad-raster.R | 108 tests/testthat/test-window-lsm.R | 84 tests/testthat/test_fragstats.R | 3884 +++++++++++----------- vignettes/getstarted.Rmd | 364 +- 355 files changed, 40349 insertions(+), 40287 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: 'GeoNetwork' API R Interface
Description: Provides an R interface to the 'GeoNetwork' API (<https://geonetwork-opensource.org/#api>) allowing to upload and publish metadata in a 'GeoNetwork' web-application and exposte it to OGC CSW.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geonapi versions 0.3 dated 2019-11-08 and 0.3-1 dated 2020-01-20
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- R/GNManager.R | 2 +- R/geonapi.R | 4 ++-- README.md | 6 +++--- man/geonapi.Rd | 4 ++-- tests/resources/config-view-service-override-legacy.xml |only 7 files changed, 18 insertions(+), 17 deletions(-)
Title: Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Description: Fits latent (hidden) Markov models on mixed categorical and continuous (time series) data, otherwise known as dependent mixture models, see Visser & Speekenbrink (2010, <DOI:10.18637/jss.v036.i07>).
Author: Ingmar Visser <i.visser@uva.nl>, Maarten Speekenbrink <m.speekenbrink@ucl.ac.uk>
Maintainer: Ingmar Visser <i.visser@uva.nl>
Diff between depmixS4 versions 1.4-1 dated 2020-01-09 and 1.4-2 dated 2020-01-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/depmixfit.R | 14 ++++++++++---- inst/doc/depmixS4.pdf |binary 4 files changed, 17 insertions(+), 11 deletions(-)
Title: Download and Manage Data from Theia
Description: Provides a simple interface to search available data provided by
Theia (<https://theia.cnes.fr>), download it, and manage it. Data can be downloaded
based on a search result or from a cart file downloaded from Theia website.
Author: Xavier Laviron [aut, cre] (<https://orcid.org/0000-0002-9882-3253>)
Maintainer: Xavier Laviron <xavier.laviron@gmx.fr>
Diff between theiaR versions 0.2.0 dated 2019-03-26 and 0.3.0 dated 2020-01-20
theiaR-0.2.0/theiaR/inst/extdata/dummy_tile.zip |only theiaR-0.3.0/theiaR/DESCRIPTION | 14 +- theiaR-0.3.0/theiaR/MD5 | 26 ++--- theiaR-0.3.0/theiaR/NEWS.md | 24 ++++ theiaR-0.3.0/theiaR/R/TheiaCollection.R | 70 ++++++++++++-- theiaR-0.3.0/theiaR/R/TheiaQuery.R | 6 + theiaR-0.3.0/theiaR/R/TheiaTile.R | 117 +++++++++++------------- theiaR-0.3.0/theiaR/build/vignette.rds |binary theiaR-0.3.0/theiaR/inst/WORDLIST | 1 theiaR-0.3.0/theiaR/inst/doc/quick-start.R | 26 ++--- theiaR-0.3.0/theiaR/inst/doc/quick-start.html | 9 - theiaR-0.3.0/theiaR/inst/templates |only theiaR-0.3.0/theiaR/man/TheiaCollection.Rd | 12 ++ theiaR-0.3.0/theiaR/man/TheiaTile.Rd | 12 +- theiaR-0.3.0/theiaR/man/theiaR.Rd | 1 15 files changed, 201 insertions(+), 117 deletions(-)
Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci, Silvia Pandolfi, Fulvia Pennoni, Alessio Farcomeni, Alessio Serafini
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>
Diff between LMest versions 2.5.1 dated 2019-07-30 and 2.6.0 dated 2020-01-20
DESCRIPTION | 10 MD5 | 62 + NAMESPACE | 16 R/complk.R | 1 R/complk_cont_miss.R |only R/decoding.R | 108 +-- R/est_multilogit.R | 40 - R/est_old.R | 3 R/functions.R | 12 R/lk_obs_cont_miss.R |only R/lmbasic.cont.R | 119 ++- R/lmcovlatent.R | 4 R/lmcovlatent.cont.R | 4 R/lmest.R | 6 R/lmestCont.R | 13 R/lmestData.R |only R/lmestDecoding.R | 1613 ++++++++++++++++++++++++++++++++-------------- R/lmestMc.R | 6 R/lmestMixed.R | 4 R/lmestSearch.R | 8 R/mcbasic.R | 2 R/summary.LMsearch.R | 9 man/LMest-package.Rd | 2 man/decoding.Rd | 2 man/draw_lm_basic.Rd | 2 man/draw_lm_basic_cont.Rd | 2 man/lmest.Rd | 4 man/lmestCont.Rd | 3 man/lmestData.Rd |only man/lmestDecoding.Rd |only man/lmestMc.Rd | 2 man/summary.lmestData.Rd |only src/LMest_init.c | 10 src/Makevars |only src/normmiss.f |only src/prodnorm.f |only src/updatevar.f |only 37 files changed, 1414 insertions(+), 653 deletions(-)
Title: Biochemically Intuitive Generalized Loewe Model
Description: Response surface methods for drug synergy analysis. Available
methods include generalized and classical Loewe formulations as well as Highest
Single Agent methodology. Response surfaces can be plotted in an interactive
3-D plot and formal statistical tests for presence of synergistic effects are
available. Implemented methods and tests are described in the article
"BIGL: Biochemically Intuitive Generalized Loewe null model for prediction
of the expected combined effect compatible with partial agonism and antagonism"
by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas,
Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017)
<doi:10.1038/s41598-017-18068-5>.
Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas
Maintainer: Maxim Nazarov <maxim.nazarov@openanalytics.eu>
Diff between BIGL versions 1.4.1 dated 2019-06-21 and 1.4.2 dated 2020-01-20
DESCRIPTION | 8 MD5 | 36 +- R/MarginalFit-methods.R | 2 R/ResponseSurface-methods.R | 16 R/fitSurface.R | 2 R/harbronLoewe.R | 2 R/hsa.R | 4 R/isobologram.R | 11 R/plotReponseSurface.R | 6 R/statistics.R | 30 + build/vignette.rds |binary inst/NEWS | 4 inst/doc/analysis.R | 60 +-- inst/doc/analysis.html | 732 ++++++++++++++++++++++++++----------------- inst/doc/methodology.Rmd | 6 inst/doc/methodology.html | 25 - man/boxcox.transformation.Rd | 2 man/fitSurface.Rd | 2 vignettes/methodology.Rmd | 6 19 files changed, 580 insertions(+), 374 deletions(-)
Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor,
or ordered type into 'POSIXct' (or 'Date') objects, using one of a number of
predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between anytime versions 0.3.6 dated 2019-08-29 and 0.3.7 dated 2020-01-20
ChangeLog | 998 +++++++++++++++++++------------------- DESCRIPTION | 8 MD5 | 25 R/anytime.R | 79 ++- README.md | 13 build/partial.rdb |binary build/vignette.rds |binary cleanup | 20 inst/NEWS.Rd | 14 inst/doc/anytime-introduction.pdf |binary inst/tinytest/test_calc_unique.R |only inst/tinytest/test_simple.R | 7 man/anytime.Rd | 18 src/Makevars | 2 14 files changed, 655 insertions(+), 529 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to the decennial US Census and American Community Survey APIs and
the US Census Bureau's geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for many
geographies.
Author: Kyle Walker [aut, cre],
Kris Eberwein [ctb],
Matt Herman [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tidycensus versions 0.9.2 dated 2019-06-12 and 0.9.5 dated 2020-01-20
DESCRIPTION | 10 - MD5 | 26 ++-- R/acs.R | 318 ++++++++++++++++++++++++++++++++++++++++++++++----- R/census.R | 181 +++++++++++++++++------------ R/estimates.R | 100 ++++++++++++++-- R/helpers.R | 70 +++++++---- R/load_data.R | 203 +++++++++++++++++++------------- R/search_variables.R | 4 R/zzz.r | 4 README.md | 6 man/get_acs.Rd | 39 ++++-- man/get_decennial.Rd | 33 ++++- man/get_estimates.Rd | 32 ++++- man/tidycensus.Rd | 1 14 files changed, 776 insertions(+), 251 deletions(-)
Title: The MCFS-ID Algorithm for Feature Selection and Interdependency
Discovery
Description: MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, 'small n large p' transactional and biological data. M. Draminski, J. Koronacki (2018) <doi:10.18637/jss.v085.i12>.
Author: Michal Draminski [aut, cre],
Jacek Koronacki [aut],
Julian Zubek [ctb]
Maintainer: Michal Draminski <michal.draminski@ipipan.waw.pl>
Diff between rmcfs versions 1.3.0 dated 2019-05-12 and 1.3.1 dated 2020-01-20
DESCRIPTION | 10 +++--- MD5 | 16 +++++----- NEWS.md | 5 +++ R/onLoad.R | 2 - R/rmcfs.R | 76 +++++++++++++++++++--------------------------------- R/rmcfs.io.R | 4 +- R/utils.R | 21 ++++++++++++++ build/vignette.rds |binary inst/doc/v85i12.pdf |binary 9 files changed, 70 insertions(+), 64 deletions(-)
Title: Design and Analysis of Non-Inferiority Trials
Description: Provides tools to help the design and analysis of resilient non-inferiority trials. These include functions for sample size
calculations and analyses of trials, with either a risk difference, risk ratio or arc-sine difference margin, and a function to run simulations to
design a trial with the methods described in Quartagno et al. (2019) <arXiv:1905.00241>.
Author: Matteo Quartagno
Maintainer: Matteo Quartagno <m.quartagno@ucl.ac.uk>
Diff between dani versions 0.1-0 dated 2019-05-03 and 0.1-1 dated 2020-01-20
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/simulations.modify.margin.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Drawing SVG Graphics to Visualize and Map Genome-Wide Data on
Idiograms
Description: For whole-genome analysis, idiograms are virtually the most intuitive and effective way to map and visualize the genome-wide information. RIdeogram was developed to visualize and map whole-genome data on idiograms with no restriction of species.
Author: Zhaodong Hao [aut, cre],
Dekang Lv [aut],
Ying Ge [aut],
Jisen Shi [aut],
Weijers Dolf [aut],
Guangchuang Yu [aut],
Jinhui Chen [aut]
Maintainer: Zhaodong Hao <haozd1992@163.com>
Diff between RIdeogram versions 0.2.1 dated 2019-12-02 and 0.2.2 dated 2020-01-20
DESCRIPTION | 6 - MD5 | 12 +- R/ideogram.R | 244 +++++++++++++++++++++++++++++++++--------------- README.md | 4 inst/doc/RIdeogram.Rmd | 2 inst/doc/RIdeogram.html | 6 - vignettes/RIdeogram.Rmd | 2 7 files changed, 183 insertions(+), 93 deletions(-)
Title: Introductory Statistics with R
Description: Data sets and scripts for text examples and exercises in
P. Dalgaard (2008), `Introductory Statistics with R', 2nd ed., Springer Verlag, ISBN 978-0387790534.
Author: Peter Dalgaard
Maintainer: Peter Dalgaard <pd.mes@cbs.dk>
Diff between ISwR versions 2.0-7 dated 2015-06-07 and 2.0-8 dated 2020-01-20
DESCRIPTION | 8 ++--- MD5 | 10 +++---- tests/allexercises.R | 2 + tests/allexercises.Rout.save | 58 ++++++++++++++++++++----------------------- tests/allscripts.R | 5 +++ tests/allscripts.Rout.save | 49 +++++++++++++++++++----------------- 6 files changed, 69 insertions(+), 63 deletions(-)
More information about Disequilibrium at CRAN
Permanent link
Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. Also offers access to an
'XPath' "interpreter".
Author: CRAN Team [ctb, cre] (de facto maintainer since 2013),
Duncan Temple Lang [aut] (<https://orcid.org/0000-0003-0159-1546>),
Tomas Kalibera [ctb]
Maintainer: CRAN Team <CRAN@r-project.org>
Diff between XML versions 3.99-0.2 dated 2020-01-18 and 3.99-0.3 dated 2020-01-20
DESCRIPTION | 11 ++++------- MD5 | 4 ++-- configure.win | 2 -- 3 files changed, 6 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-30 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-19 1.5.4
Title: Converts Between R Objects and Simple Feature Objects
Description: Converts between R and Simple Feature 'sf' objects, without depending
on the Simple Feature library. Conversion functions are available at both the R level,
and through 'Rcpp'.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <david.cooley.au@gmail.com>
Diff between sfheaders versions 0.0.2 dated 2019-11-07 and 0.1.0 dated 2020-01-20
sfheaders-0.0.2/sfheaders/R/scratch.R |only sfheaders-0.1.0/sfheaders/DESCRIPTION | 12 sfheaders-0.1.0/sfheaders/MD5 | 113 sfheaders-0.1.0/sfheaders/NAMESPACE | 3 sfheaders-0.1.0/sfheaders/NEWS.md | 7 sfheaders-0.1.0/sfheaders/R/RcppExports.R | 36 sfheaders-0.1.0/sfheaders/R/df.R |only sfheaders-0.1.0/sfheaders/R/sf.R | 139 - sfheaders-0.1.0/sfheaders/README.md | 28 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/df |only sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sf/linestring/sf_linestring.hpp | 243 + sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sf/multilinestring/sf_multilinestring.hpp | 301 ++ sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sf/multipoint/sf_multipoint.hpp | 251 + sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sf/multipolygon/sf_multipolygon.hpp | 405 ++- sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sf/point/sf_point.hpp | 196 + sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sf/polygon/sf_polygon.hpp | 313 ++ sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sf/sf_utils.hpp | 231 + sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfc/linestring/sfc_linestring.hpp | 91 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfc/m_range.hpp | 38 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfc/multilinestring/sfc_multilinestring.hpp | 1315 +++++----- sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfc/multipoint/sfc_multipoint.hpp | 73 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfc/multipolygon/sfc_multipolygon.hpp | 106 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfc/point/sfc_point.hpp | 7 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfc/polygon/sfc_polygon.hpp | 91 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfc/z_range.hpp | 13 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfg/multipolygon/sfg_multipolygon.hpp | 17 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfg/point/sfg_point.hpp | 24 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/sfg/polygon/close_polygon.hpp | 18 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/shapes/list_list_mat/list_list_mat.hpp | 10 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/shapes/list_mat/list_mat.hpp | 15 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/utils/columns/columns.hpp | 132 - sfheaders-0.1.0/sfheaders/inst/include/sfheaders/utils/lines/lines.hpp | 70 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/utils/matrix/matrix.hpp | 3 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/utils/utils.hpp | 4 sfheaders-0.1.0/sfheaders/inst/include/sfheaders/utils/vectors/vectors.hpp | 187 - sfheaders-0.1.0/sfheaders/man/sf_linestring.Rd | 18 sfheaders-0.1.0/sfheaders/man/sf_multilinestring.Rd | 23 sfheaders-0.1.0/sfheaders/man/sf_multipoint.Rd | 16 sfheaders-0.1.0/sfheaders/man/sf_multipolygon.Rd | 18 sfheaders-0.1.0/sfheaders/man/sf_point.Rd | 21 sfheaders-0.1.0/sfheaders/man/sf_polygon.Rd | 17 sfheaders-0.1.0/sfheaders/man/sf_to_df.Rd |only sfheaders-0.1.0/sfheaders/man/sfc_to_df.Rd |only sfheaders-0.1.0/sfheaders/man/sfg_to_df.Rd |only sfheaders-0.1.0/sfheaders/src/RcppExports.cpp | 103 sfheaders-0.1.0/sfheaders/src/to_df.cpp |only sfheaders-0.1.0/sfheaders/src/to_sf.cpp | 24 sfheaders-0.1.0/sfheaders/src/to_sfc.cpp | 12 sfheaders-0.1.0/sfheaders/tests/testthat/test-df.R |only sfheaders-0.1.0/sfheaders/tests/testthat/test-sf.R | 161 + sfheaders-0.1.0/sfheaders/tests/testthat/test-sf_linestring.R |only sfheaders-0.1.0/sfheaders/tests/testthat/test-sf_multilinestring.R |only sfheaders-0.1.0/sfheaders/tests/testthat/test-sf_multipoint.R |only sfheaders-0.1.0/sfheaders/tests/testthat/test-sf_multipolygon.R |only sfheaders-0.1.0/sfheaders/tests/testthat/test-sf_point.R |only sfheaders-0.1.0/sfheaders/tests/testthat/test-sf_polygon.R |only sfheaders-0.1.0/sfheaders/tests/testthat/test-sfc_attributes.R | 27 sfheaders-0.1.0/sfheaders/tests/testthat/test-sfc_linestring.R | 16 sfheaders-0.1.0/sfheaders/tests/testthat/test-sfc_multipoint.R | 2 sfheaders-0.1.0/sfheaders/tests/testthat/test-sfc_point.R | 29 sfheaders-0.1.0/sfheaders/tests/testthat/test-sfg_multipolygon.R | 39 sfheaders-0.1.0/sfheaders/tests/testthat/test-sfg_point.R | 15 sfheaders-0.1.0/sfheaders/tests/testthat/test-sfg_polygon.R | 10 63 files changed, 3788 insertions(+), 1255 deletions(-)
Title: Automatic Detection of Experimental Unit in Precision
Agriculture
Description: A part of precision agriculture is linked to the spectral image obtained from the cameras. With the image information of the agricultural experiment, the included functions facilitate the collection of spectral data associated with the experimental units. Some designs generated in R are linked to the images, which allows the use of the information of each pixel of the image in the experimental unit and the treatment. Tables and images are generated for the analysis of the precision agriculture experiment during the entire vegetative period of the crop.
Author: Felipe de Mendiburu [aut, cre],
David Mauricio [aut],
Rodrigo Morales [aut],
Roberto Quiroz [aut]
Maintainer: Felipe de Mendiburu <fmendiburu@lamolina.edu.pe>
Diff between rPAex versions 1.0 dated 2019-12-22 and 1.0.1 dated 2020-01-20
rPAex-1.0.1/rPAex/DESCRIPTION | 8 - rPAex-1.0.1/rPAex/MD5 | 26 ++- rPAex-1.0.1/rPAex/NEWS |only rPAex-1.0.1/rPAex/R/imageField.R | 122 ++++++++--------- rPAex-1.0.1/rPAex/R/movePlot.R |only rPAex-1.0.1/rPAex/inst/NEWS.Rd |only rPAex-1.0.1/rPAex/inst/examples |only rPAex-1.0.1/rPAex/inst/script |only rPAex-1.0.1/rPAex/man/borderPoint.Rd | 98 ++++++------- rPAex-1.0.1/rPAex/man/designRaster.Rd | 25 +-- rPAex-1.0.1/rPAex/man/externalPoint.Rd | 99 ++++++------- rPAex-1.0.1/rPAex/man/fixedPoint.Rd | 126 ++++++++--------- rPAex-1.0.1/rPAex/man/fourPoint.Rd | 75 +++++----- rPAex-1.0.1/rPAex/man/imageField.Rd | 102 +++++++------- rPAex-1.0.1/rPAex/man/movePlot.Rd |only rPAex-1.0.1/rPAex/man/rPAex.Rd | 207 ++++++++++++++--------------- rPAex-1.0/rPAex/inst/Examples |only rPAex-1.0/rPAex/inst/external/fileRaster.R |only 18 files changed, 444 insertions(+), 444 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as "add-ons" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using 'RcppParallel' and 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chipset, memory
limit, etc.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <zhengjia.wang@rice.edu>
Diff between dipsaus versions 0.0.3 dated 2019-11-18 and 0.0.4 dated 2020-01-20
dipsaus-0.0.3/dipsaus/man/queue.Rd |only dipsaus-0.0.3/dipsaus/src/Makevars |only dipsaus-0.0.3/dipsaus/src/rcppexports.cpp |only dipsaus-0.0.4/dipsaus/DESCRIPTION | 17 dipsaus-0.0.4/dipsaus/MD5 | 144 dipsaus-0.0.4/dipsaus/NAMESPACE | 16 dipsaus-0.0.4/dipsaus/NEWS.md | 15 dipsaus-0.0.4/dipsaus/R/RcppExports.R | 8 dipsaus-0.0.4/dipsaus/R/aaa.R | 4 dipsaus-0.0.4/dipsaus/R/cpp-baseline_array.R |only dipsaus-0.0.4/dipsaus/R/cpp-collapse.R | 83 dipsaus-0.0.4/dipsaus/R/lock.R |only dipsaus-0.0.4/dipsaus/R/map-abstract.R | 39 dipsaus-0.0.4/dipsaus/R/map-qs.R | 4 dipsaus-0.0.4/dipsaus/R/map-rds.R | 32 dipsaus-0.0.4/dipsaus/R/map-redis.R | 26 dipsaus-0.0.4/dipsaus/R/map-txt.R | 4 dipsaus-0.0.4/dipsaus/R/parallels-workers.R | 8 dipsaus-0.0.4/dipsaus/R/parallels.R | 2 dipsaus-0.0.4/dipsaus/R/queue-abstract.R | 71 dipsaus-0.0.4/dipsaus/R/queue-memory.R | 16 dipsaus-0.0.4/dipsaus/R/queue-rds.R | 19 dipsaus-0.0.4/dipsaus/R/queue-redis.R | 15 dipsaus-0.0.4/dipsaus/R/queue-s3.R | 20 dipsaus-0.0.4/dipsaus/R/queue-txtq.R | 9 dipsaus-0.0.4/dipsaus/R/screenshot.R |only dipsaus-0.0.4/dipsaus/R/shiny-compoundInput2.R | 145 dipsaus-0.0.4/dipsaus/R/shiny-inputbindings.R | 8 dipsaus-0.0.4/dipsaus/R/shiny-setInputs.R |only dipsaus-0.0.4/dipsaus/R/shiny-syncInputs.R | 5 dipsaus-0.0.4/dipsaus/R/strings.R | 25 dipsaus-0.0.4/dipsaus/R/systems.R | 10 dipsaus-0.0.4/dipsaus/R/utils.R | 14 dipsaus-0.0.4/dipsaus/R/zzz.R | 17 dipsaus-0.0.4/dipsaus/build/vignette.rds |binary dipsaus-0.0.4/dipsaus/configure |only dipsaus-0.0.4/dipsaus/configure.ac |only dipsaus-0.0.4/dipsaus/configure.win |only dipsaus-0.0.4/dipsaus/inst/doc/async_evaluator.R | 32 dipsaus-0.0.4/dipsaus/inst/doc/async_evaluator.html | 3 dipsaus-0.0.4/dipsaus/inst/doc/r_expr_addons.R | 32 dipsaus-0.0.4/dipsaus/inst/doc/r_expr_addons.html | 9 dipsaus-0.0.4/dipsaus/inst/doc/shiny_customized_widgets.R | 16 dipsaus-0.0.4/dipsaus/inst/doc/shiny_customized_widgets.html | 7185 +++++++++- dipsaus-0.0.4/dipsaus/inst/doc/utility_functions.R | 18 dipsaus-0.0.4/dipsaus/inst/doc/utility_functions.html | 5 dipsaus-0.0.4/dipsaus/inst/shiny-addons/dipsaus/dipsaus-dipterix-lib.js | 7183 +++++++++ dipsaus-0.0.4/dipsaus/man/AbstractMap.Rd | 6 dipsaus-0.0.4/dipsaus/man/AbstractQueue.Rd | 12 dipsaus-0.0.4/dipsaus/man/MasterEvaluator.Rd | 6 dipsaus-0.0.4/dipsaus/man/PersistContainer.Rd | 6 dipsaus-0.0.4/dipsaus/man/actionButtonStyled.Rd | 12 dipsaus-0.0.4/dipsaus/man/async_expr.Rd | 11 dipsaus-0.0.4/dipsaus/man/base64_to_image.Rd |only dipsaus-0.0.4/dipsaus/man/baseline_array.Rd |only dipsaus-0.0.4/dipsaus/man/cat2.Rd | 20 dipsaus-0.0.4/dipsaus/man/check_installed_packages.Rd | 8 dipsaus-0.0.4/dipsaus/man/compoundInput2.Rd | 14 dipsaus-0.0.4/dipsaus/man/deparse_svec.Rd | 9 dipsaus-0.0.4/dipsaus/man/lock.Rd |only dipsaus-0.0.4/dipsaus/man/make_async_evaluator.Rd | 12 dipsaus-0.0.4/dipsaus/man/make_forked_clusters.Rd | 6 dipsaus-0.0.4/dipsaus/man/match_calls.Rd | 10 dipsaus-0.0.4/dipsaus/man/parse_svec.Rd | 3 dipsaus-0.0.4/dipsaus/man/progress2.Rd | 9 dipsaus-0.0.4/dipsaus/man/screenshot.Rd |only dipsaus-0.0.4/dipsaus/man/set_shiny_input.Rd |only dipsaus-0.0.4/dipsaus/man/shift_array.Rd |only dipsaus-0.0.4/dipsaus/man/sync_shiny_inputs.Rd | 10 dipsaus-0.0.4/dipsaus/man/updateActionButtonStyled.Rd | 11 dipsaus-0.0.4/dipsaus/man/updateCompoundInput2.Rd | 10 dipsaus-0.0.4/dipsaus/src/Makevars.in |only dipsaus-0.0.4/dipsaus/src/Makevars.win | 9 dipsaus-0.0.4/dipsaus/src/RcppExports.cpp |only dipsaus-0.0.4/dipsaus/src/packagename_init.c | 10 dipsaus-0.0.4/dipsaus/src/rcpp_arrayShift.cpp |only dipsaus-0.0.4/dipsaus/src/rcpp_baselineArray.cpp |only dipsaus-0.0.4/dipsaus/src/rcpp_collapse.cpp | 21 dipsaus-0.0.4/dipsaus/src/utils.cpp |only dipsaus-0.0.4/dipsaus/src/utils.h |only dipsaus-0.0.4/dipsaus/tests/testthat/test.baseline.R |only dipsaus-0.0.4/dipsaus/tests/testthat/test.collapse.R | 3 dipsaus-0.0.4/dipsaus/tests/testthat/test.maps.R | 2 dipsaus-0.0.4/dipsaus/tests/testthat/test.queues.R | 3 dipsaus-0.0.4/dipsaus/tests/testthat/test.shift_array.R |only 85 files changed, 15020 insertions(+), 462 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-02 1.2.2
2019-02-28 1.2.1
2019-01-25 1.2.0
2018-12-16 1.1.9
2018-10-09 1.1.5
2017-07-19 1.1.0
2017-06-19 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-12 0.1.5
2014-07-03 0.1.4
2014-03-20 0.1.1
2013-12-13 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-01 0.1.4
2019-01-09 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-07 2.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-01 0.2.0
2016-05-13 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-21 0.0.1