Title: Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Description: Use the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and
van der Linden (2018) <doi:10.1201/9781315117430> in constructing fixed and adaptive tests. Supports the following
mixed-integer programming (MIP) solver packages: 'lpsymphony', 'Rsymphony', 'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package
is not available from CRAN; see <https://www.gurobi.com/downloads>. See vignette for installing 'Rsymphony' package
on Mac systems.
Author: Seung W. Choi [aut, cre] (<https://orcid.org/0000-0003-4777-5420>),
Sangdon Lim [aut] (<https://orcid.org/0000-0002-2988-014X>)
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between TestDesign versions 1.0.0 dated 2019-11-04 and 1.0.1 dated 2020-01-24
DESCRIPTION | 18 +-- MD5 | 94 +++++++++--------- NAMESPACE | 5 NEWS.md | 30 ++++- R/helper_functions.R |only R/import.R | 18 ++- R/item_functions.R | 1 R/loading_functions.R | 31 ++++- R/shadow_class.R | 78 +++++++++----- R/shadow_functions.R | 188 +++++++++++++++++++++++------------- R/solver_functions.R | 18 +-- R/static_class.R | 5 R/static_functions.R | 18 --- build/partial.rdb |binary build/vignette.rds |binary inst/shiny/app.R | 31 ----- inst/shiny/styles.css |only man/Shadow-methods.Rd | 24 +++- man/buildConstraints.Rd | 8 + man/calcFisher-methods.Rd | 17 --- man/calcRP.Rd | 3 man/calc_log_likelihood_function.Rd | 11 +- man/calc_posterior_function.Rd | 11 +- man/createShadowTestConfig.Rd | 18 ++- man/eaparray-methods.Rd | 3 man/getSolution-methods.Rd |only man/loadConstraints.Rd | 2 man/loadItemPool.Rd | 4 man/makeTest-methods.Rd | 16 ++- man/makeTestCluster-methods.Rd | 6 - man/mle-methods.Rd | 30 ++++- man/mlearray-methods.Rd | 31 ++++- man/plotCAT-methods.Rd | 41 ++++++- man/plotEligibilityStats.Rd | 15 ++ man/plotExposure-methods.Rd | 23 +++- man/plotExposureRateBySegment.Rd | 11 +- man/plotExposureRateFinal.Rd | 18 ++- man/plotExposureRateFinalFlag.Rd | 14 ++ man/plotInfo-methods.Rd | 63 +++++++++--- man/plotInfoOverlay.Rd | 12 +- man/plotRMSE.Rd | 12 +- man/plotShadow-methods.Rd | 20 +++ man/showConstraints.Rd |only man/theta_EAP_matrix.Rd | 3 man/theta_EB.Rd | 13 ++ man/theta_EB_single.Rd | 13 ++ man/theta_FB.Rd | 14 ++ man/theta_FB_single.Rd | 14 ++ tests/testthat/test-exposure.R | 6 - tests/testthat/test-static.R | 4 50 files changed, 668 insertions(+), 347 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.9.800.3.0 dated 2019-12-07 and 0.9.800.4.0 dated 2020-01-24
ChangeLog | 11 +++++++++++ DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- build/vignette.rds |binary inst/NEWS.Rd | 15 +++++++++++++++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/RcppArmadilloForward.h | 3 +++ inst/include/armadillo_bits/arma_version.hpp | 2 +- inst/include/armadillo_bits/fn_normpdf.hpp | 8 ++++---- inst/tinytest/test_scipy2r.R | 2 ++ 11 files changed, 50 insertions(+), 19 deletions(-)
Title: Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this
implementation we supply a "wrapper" function in C and some R
functions that solve general linear/integer problems,
assignment problems, and transportation problems. This version
calls lp_solve version 5.5.
Author: Michel Berkelaar and others
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between lpSolve versions 5.6.13.3 dated 2019-08-19 and 5.6.15 dated 2020-01-24
DESCRIPTION | 16 ++++++---------- MD5 | 4 ++-- src/yacc_read.c | 5 ++++- 3 files changed, 12 insertions(+), 13 deletions(-)
Title: Dixon's Ratio Test for Outlier Detection
Description: For outlier detection in small and normally distributed
samples the ratio test of Dixon (Q-test) can be used. Density,
distribution function, quantile function and random generation
for Dixon's ratio statistics are provided as wrapper functions.
The core applies McBane's Fortran functions <doi:10.18637/jss.v016.i03>
that use Gaussian quadrature for a numerical solution.
Author: Thorsten Pohlert [aut, cre] (<https://orcid.org/0000-0003-3855-3025>),
George C. McBane [ctb]
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between dixonTest versions 1.0.1 dated 2020-01-12 and 1.0.2 dated 2020-01-24
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 2 +- R/Dixon.R | 10 ++++------ inst/NEWS.Rd | 7 ++++++- src/init.c | 25 ------------------------- 6 files changed, 19 insertions(+), 41 deletions(-)
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are
cumulative probability distributions which are fitted to
toxicity concentrations for different species as described by
Posthuma et al. (2001) <isbn:9781566705783>.
The ssdtools package uses Maximum Likelihood to fit distributions
such as the log-normal, gamma, burr Type-III, log-logistic,
log-Gumbel, Gompertz and Weibull.
The user can provide custom distributions.
Multiple distributions can be averaged using Information Criteria.
Confidence intervals on hazard concentrations and proportions are produced by
parametric bootstrapping.
Author: Joe Thorley [aut, cre, ctr] (<https://orcid.org/0000-0002-7683-4592>),
Carl Schwarz [aut, ctr],
Angeline Tillmanns [ctb],
Ali Azizishirazi [ctb],
Rebecca Fisher [ctb],
David Fox [ctb],
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Andy Teucher [ctb],
Emilie Doussantousse [ctb],
Stephanie Hazlitt [ctb],
Nan-Hung Hsieh [ctb],
Sergio Ibarra Espinosa [ctb],
Province of British Columbia [cph]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 0.1.0 dated 2020-01-13 and 0.1.1 dated 2020-01-24
DESCRIPTION | 6 ++--- MD5 | 18 ++++++++--------- NEWS.md | 4 +++ inst/doc/distributions.html | 12 ++++------- inst/doc/exposure-plots.html | 12 ++++------- inst/doc/faqs.html | 12 ++++------- inst/doc/small-sample-bias-ref.html | 12 ++++------- inst/doc/ssdtools.html | 12 ++++------- tests/testthat/test-fit.R | 12 +++++------ tests/testthat/test-predict.R | 37 +++++++++++++----------------------- 10 files changed, 61 insertions(+), 76 deletions(-)
Title: An Extended Rao-Stirling Diversity Index to Handle Missing Data
Description: A collection of functions to compute the Rao-Stirling diversity index
(Porter and Rafols, 2009) <DOI:10.1007/s11192-008-2197-2> and its extension to
acknowledge missing data (i.e., uncategorized references) by calculating its
interval of uncertainty using mathematical optimization as proposed in Calatrava
et al. (2016) <DOI:10.1007/s11192-016-1842-4>.
The Rao-Stirling diversity index is a well-established bibliometric indicator
to measure the interdisciplinarity of scientific publications. Apart from the
obligatory dataset of publications with their respective references and a
taxonomy of disciplines that categorizes references as well as a measure of
similarity between the disciplines, the Rao-Stirling diversity index requires
a complete categorization of all references of a publication into disciplines.
Thus, it fails for a incomplete categorization; in this case, the robust
extension has to be used, which encodes the uncertainty caused by missing
bibliographic data as an uncertainty interval.
Classification / ACM - 2012: Information systems ~ Similarity measures,
Theory of computation ~ Quadratic programming, Applied computing ~ Digital
libraries and archives.
Author: Maria del Carmen Calatrava Moreno [aut, cre],
Thomas Auzinger [aut]
Maintainer: Maria del Carmen Calatrava Moreno
<mc.calatrava.moreno@gmail.com>
Diff between robustrao versions 1.0-4 dated 2020-01-22 and 1.0-5 dated 2020-01-24
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Analyzing High-Throughput Single Cell Sequencing Data
Description: A toolkit that allows scientists to work with data from single cell sequencing technologies such as scRNA-seq, scVDJ-seq and CITE-Seq. Single (i) Cell R package ('iCellR') provides unprecedented flexibility at every step of the analysis pipeline, including normalization, clustering, dimensionality reduction, imputation, visualization, and so on. Users can design both unsupervised and supervised models to best suit their research. In addition, the toolkit provides 2D and 3D interactive visualizations, differential expression analysis, filters based on cells, genes and clusters, data merging, normalizing for dropouts, data imputation methods, correcting for batch differences, pathway analysis, tools to find marker genes for clusters and conditions, predict cell types and pseudotime analysis. See Li F, et al (2019) <doi:10.1158/2159-8290.CD-19-0780> for more details.
Author: Alireza Khodadadi-Jamayran [aut, cre]
(<https://orcid.org/0000-0003-2495-7504>),
Joseph Pucella [ctb],
Hua Zhou [ctb],
Nicole Doudican [ctb],
John Carucci [ctb],
Adriana Heguy [ctb],
Boris Reizis [ctb],
Aristotelis Tsirigos [aut, ctb]
(<https://orcid.org/0000-0002-7512-8477>)
Maintainer: Alireza Khodadadi-Jamayran <alireza.khodadadi.j@gmail.com>
Diff between iCellR versions 1.2.9 dated 2020-01-16 and 1.3.0 dated 2020-01-24
DESCRIPTION | 41 +++++++++++++++++++++-------------------- MD5 | 30 ++++++++++++++++-------------- NAMESPACE | 3 +++ R/F002.data.aggregation.R | 5 +++++ R/F007.down.sample.R | 1 - R/F016.clust.cond.info.R | 6 ------ R/F040.add.vdj.R | 1 - R/F042vdj.stats.R | 6 +++--- R/F044.myclass.R | 26 ++++++++++++++++++++------ R/k.run.cca.R | 2 +- R/load.h5.R |only R/run.anchor.R | 2 +- R/run.mnn.R | 2 +- man/add.vdj.Rd | 1 - man/clust.cond.info.Rd | 7 ------- man/down.sample.Rd | 1 - man/load.h5.Rd |only 17 files changed, 71 insertions(+), 63 deletions(-)
Title: Hydrological Codes
Description: Pfafstetter Hydrological Codes
as cited in Verdin and Verdin (1999) <doi: 10.1016/S0022-1694(99)00011-6>
are decoded for upstream or downstream queries.
Author: Thorsten Pohlert [aut, cre] (<https://orcid.org/0000-0003-3855-3025>)
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between HydroCode versions 1.0.0 dated 2019-12-18 and 1.0.1 dated 2020-01-24
DESCRIPTION | 11 +++++------ MD5 | 19 ++++++++++--------- NAMESPACE | 1 + R/rhineCCM2.R | 3 ++- R/rhineHYBASlev08.R | 5 +++-- R/upstream.R | 2 +- build/partial.rdb |binary inst/NEWS.Rd |only man/is.upstream.Rd | 2 +- man/rhineCCM2.Rd | 2 +- man/rhineHYBASlev08.Rd | 4 ++-- 11 files changed, 26 insertions(+), 23 deletions(-)
Title: Spatio-Temporal (Hero) Sandwich Smoother
Description: An implementation of the sandwich smoother proposed in Fast Bivariate Penalized Splines by Xiao et al. (2012) <doi:10.1111/rssb.12007>. A hero is a specific type of sandwich. Dictionary.com (2018) <https://www.dictionary.com> describes a hero as: a large sandwich, usually consisting of a small loaf of bread or long roll cut in half lengthwise and containing a variety of ingredients, as meat, cheese, lettuce, and tomatoes.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between hero versions 0.0.3 dated 2018-10-30 and 0.4.7 dated 2020-01-24
DESCRIPTION | 16 ++--- MD5 | 131 ++++++++++++++++++++++++++++++++++++++++-- NAMESPACE | 76 ++++++++++++++++++++++++ R/adjacent.R |only R/as.starray.R |only R/as.sts.R |only R/assemble.R |only R/assemble.hero_bspline.R |only R/assemble.hero_radspline.R |only R/assemble.list.R |only R/border.grid.R |only R/bspline.R |only R/circulate.R |only R/connect.R |only R/create.prepared_list.R |only R/default.evalargs.R |only R/default.splines.R |only R/diffpen.R |only R/enhance.R |only R/enhance.grid.R |only R/enlarge.R |only R/generate.data2d.R | 2 R/hero.R |only R/hero.prepared_array.R |only R/hero.prepared_list.R |only R/hero.prepared_matrix.R |only R/hero.prepared_numeric.R |only R/hero.prepared_starray.R |only R/hero.prepared_sts.R |only R/knot.design.R |only R/kronecker.seq.R |only R/loglambda2gcv.R |only R/plot.hero.R |only R/plot.hero_adjacent.R |only R/plot.hero_bspline.R |only R/plot.hero_enlarge.R |only R/plot.hero_numeric.R |only R/plot.hero_radspline.R |only R/poly2SpatialPolygons.R |only R/precompute.R |only R/predict.hero.R |only R/predict.hero_bspline.R |only R/predict.hero_radspline.R |only R/prepare.R |only R/prepare.array.R |only R/prepare.list.R |only R/prepare.matrix.R |only R/prepare.numeric.R |only R/prepare.starray.R |only R/prepare.sts.R |only R/radspline.R |only R/rh.R |only R/rh.seq.R |only R/spdiffpen.R |only R/tasmax.R |only R/wrfg_cgcm3_tasmax.R |only data/datalist |only data/tasmax.rda |only data/wrfg_cgcm3_tasmax.rda |only man/adjacent.Rd |only man/as.starray.Rd |only man/as.sts.Rd |only man/assemble.Rd |only man/border.grid.Rd |only man/bspline.Rd |only man/circulate.Rd |only man/connect.Rd |only man/create.prepared_list.Rd |only man/default.evalargs.Rd |only man/default.splines.Rd |only man/diffpen.Rd |only man/enhance.Rd |only man/enhance.grid.Rd |only man/enlarge.Rd |only man/generate.data2d.Rd | 90 ++++++++++++++-------------- man/generate.data3d.Rd | 90 ++++++++++++++-------------- man/hero.Rd |only man/knot.design.Rd |only man/kronecker.seq.Rd |only man/loglambda2gcv.Rd |only man/ludata.Rd | 60 +++++++++---------- man/plot.hero.Rd |only man/plot.hero_adjacent.Rd |only man/plot.hero_bspline.Rd |only man/plot.hero_enlarge.Rd |only man/plot.hero_radspline.Rd |only man/poly2SpatialPolygons.Rd |only man/precompute.Rd |only man/predict.hero.Rd |only man/predict.hero_bspline.Rd |only man/predict.hero_radspline.Rd |only man/prepare.Rd |only man/prepare.array.Rd |only man/prepare.list.Rd |only man/prepare.matrix.Rd |only man/prepare.numeric.Rd |only man/prepare.starray.Rd |only man/prepare.sts.Rd |only man/radspline.Rd |only man/rh.Rd |only man/rh.seq.Rd |only man/spdiffpen.Rd |only man/tasmax.Rd |only man/wrfg_cgcm3_tasmax.Rd |only tests |only 105 files changed, 330 insertions(+), 135 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools that the author (Jacob) has written
for the purpose of more efficiently understanding and sharing the results of
(primarily) regression analyses. There are also a number of miscellaneous
functions for statistical and programming purposes. Just about everything
supports models from the survey package.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <long.1377@osu.edu>
Diff between jtools versions 2.0.1 dated 2019-04-08 and 2.0.2 dated 2020-01-24
DESCRIPTION | 12 MD5 | 82 +-- NAMESPACE | 43 - NEWS.md | 22 R/effect_plot.R | 4 R/export_summ.R | 598 ----------------------- R/gscale.R | 880 +++++++++++++++++------------------ R/internal.R | 44 + R/make_new_data.R | 1 R/make_predictions.R | 8 R/pR2.R | 15 R/plot_coefs.R |only R/programming_helpers.R | 6 R/scale_lm.R | 930 ++++++++++++++++++------------------- R/summ.R | 8 R/svytools.R | 4 R/theme_nice.R | 16 README.md | 14 build/vignette.rds |binary inst/doc/effect_plot.html | 137 ++--- inst/doc/summ.html | 127 ++--- inst/doc/svycor.R | 46 - inst/doc/svycor.html | 95 +-- man/center.Rd | 4 man/center_mod.Rd | 4 man/effect_plot.Rd | 2 man/figures/unnamed-chunk-10-1.png |binary man/figures/unnamed-chunk-7-1.png |binary man/figures/unnamed-chunk-8-1.png |binary man/figures/unnamed-chunk-9-1.png |binary man/glance.summ.Rd | 12 man/gscale.Rd | 4 man/plot_summs.Rd | 2 man/reexports.Rd | 6 man/roxygen |only man/scale_mod.Rd | 4 man/standardize.Rd | 4 man/subsetters.Rd | 6 man/summ.merMod.Rd | 4 man/svycor.Rd | 4 man/svysd.Rd | 4 man/wrap_str.Rd | 6 tests/testthat/Rplots.pdf |binary 43 files changed, 1323 insertions(+), 1835 deletions(-)
Title: Goodman-Bacon Decomposition
Description: Decomposition for differences-in-differences with variation in
treatment timing from Goodman-Bacon (2018) <doi:10.3386/w25018>.
Author: Evan Flack [aut, cre],
Edward Jee [aut]
Maintainer: Evan Flack <evanjflack@gmail.com>
Diff between bacondecomp versions 0.1.0 dated 2020-01-16 and 0.1.1 dated 2020-01-24
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- NEWS.md | 5 ++++- R/bacon.R | 18 ++++++++++-------- README.md | 7 +++++++ inst/doc/bacon.html | 14 +++++++------- tests/testthat/test_summary.R |only 7 files changed, 39 insertions(+), 26 deletions(-)
Title: Software for Analysis of Weighted, Two-Mode, and Longitudinal
Networks
Description: R package for analyzing weighted, two-mode, and longitudinal networks.
Author: Tore Opsahl
Maintainer: ORPHANED
Diff between tnet versions 3.0.14 dated 2015-11-18 and 3.0.14.1 dated 2020-01-24
DESCRIPTION | 11 +++++++---- MD5 | 4 ++-- man/tnet_ucinet.Rd | 6 +++--- 3 files changed, 12 insertions(+), 9 deletions(-)
Title: Mapping Markers to the Nearest Genomic Feature
Description: Allows the user to generate a list of features (gene, pseudo, RNA,
CDS, and/or UTR) directly from NCBI database for any species with a current
build available. Option to save downloaded and formatted files is available,
and the user can prioritize the feature list based on type and assembly builds
present in the current build used. The user can then use the list of features
generated or provide a list to map a set of markers (designed for SNP markers
with a single base pair position available) to the closest feature based on
the map build. This function does require map positions of the markers to be
provided and the positions should be based on the build being queried through
NCBI.
Author: Lauren L. Hulsman Hanna and David G. Riley
Maintainer: Lauren Hanna <Lauren.Hanna@ndsu.edu>
Diff between Map2NCBI versions 1.3 dated 2019-05-15 and 1.4 dated 2020-01-24
Map2NCBI-1.3/Map2NCBI/R/GetGeneList_v11.R |only Map2NCBI-1.3/Map2NCBI/man/GetGeneList_v11.Rd |only Map2NCBI-1.4/Map2NCBI/DESCRIPTION | 10 ++++---- Map2NCBI-1.4/Map2NCBI/MD5 | 15 ++++++------- Map2NCBI-1.4/Map2NCBI/R/GetGeneList.R | 30 ++++++++++++++++++-------- Map2NCBI-1.4/Map2NCBI/data/GeneList_BTA1.rda |binary Map2NCBI-1.4/Map2NCBI/inst |only Map2NCBI-1.4/Map2NCBI/man/GetGeneList.Rd | 20 ++++++++++------- Map2NCBI-1.4/Map2NCBI/man/Map2NCBI-package.Rd | 9 ++++--- Map2NCBI-1.4/Map2NCBI/man/MapMarkers.Rd | 2 - 10 files changed, 51 insertions(+), 35 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis
of spectral data including nuclear magnetic resonance (NMR), infrared (IR),
Raman, X-ray fluorescence (XRF) and other similar types of spectroscopy.
Includes functions for plotting and inspecting spectra, peak alignment,
hierarchical cluster analysis (HCA), principal components analysis (PCA) and
model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed for structured
experiments, such as metabolomics investigations, where the samples fall into
treatment and control groups. Graphical output is formatted consistently for
publication quality plots. ChemoSpec is intended to be very user friendly and
to help you get usable results quickly. A vignette covering typical operations
is available.
Author: Bryan A. Hanson [aut, cre] (<https://orcid.org/0000-0003-3536-8246>),
Mike Bostock [cph, ctb] (author of the d3.js library used by
plotSpectraJS, http://d3js.org),
Matt Keinsley [ctb] (author of initial AOV-PCA code)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 5.1.48 dated 2019-07-25 and 5.2.12 dated 2020-01-24
ChemoSpec-5.1.48/ChemoSpec/R/sampleDistSpectra.R |only ChemoSpec-5.1.48/ChemoSpec/man/sampleDistSpectra.Rd |only ChemoSpec-5.2.12/ChemoSpec/DESCRIPTION | 18 ChemoSpec-5.2.12/ChemoSpec/MD5 | 224 ++-- ChemoSpec-5.2.12/ChemoSpec/NAMESPACE | 3 ChemoSpec-5.2.12/ChemoSpec/NEWS.md | 23 ChemoSpec-5.2.12/ChemoSpec/R/ChemoSpec-package.R | 18 ChemoSpec-5.2.12/ChemoSpec/R/LoopThruSpectra.R | 45 ChemoSpec-5.2.12/ChemoSpec/R/MUD.R | 14 ChemoSpec-5.2.12/ChemoSpec/R/Spectra.R | 8 ChemoSpec-5.2.12/ChemoSpec/R/SrE.R | 10 ChemoSpec-5.2.12/ChemoSpec/R/aovPCAloadings.R | 123 +- ChemoSpec-5.2.12/ChemoSpec/R/aovPCAscores.R | 91 - ChemoSpec-5.2.12/ChemoSpec/R/aov_pcaSpectra.R | 224 ++-- ChemoSpec-5.2.12/ChemoSpec/R/avgFacLvls.R | 83 - ChemoSpec-5.2.12/ChemoSpec/R/baselineSpectra.R | 189 +-- ChemoSpec-5.2.12/ChemoSpec/R/binData.R | 151 +-- ChemoSpec-5.2.12/ChemoSpec/R/binSpectra.R | 168 +-- ChemoSpec-5.2.12/ChemoSpec/R/c_pcaSpectra.R | 98 +- ChemoSpec-5.2.12/ChemoSpec/R/check4GapsStub.R | 4 ChemoSpec-5.2.12/ChemoSpec/R/chkSpectraStub.R | 4 ChemoSpec-5.2.12/ChemoSpec/R/cleanArgs.R | 37 ChemoSpec-5.2.12/ChemoSpec/R/clupaSpectra.R | 60 - ChemoSpec-5.2.12/ChemoSpec/R/colorSymbolStub.R | 7 ChemoSpec-5.2.12/ChemoSpec/R/coordProjCS.R | 483 +++++----- ChemoSpec-5.2.12/ChemoSpec/R/cv_pcaSpectra.R | 246 ++--- ChemoSpec-5.2.12/ChemoSpec/R/evalClusters.R | 77 - ChemoSpec-5.2.12/ChemoSpec/R/files2SpectraObject.R | 416 ++++---- ChemoSpec-5.2.12/ChemoSpec/R/hcaScoresStub.R | 4 ChemoSpec-5.2.12/ChemoSpec/R/hcaSpectra.R | 65 - ChemoSpec-5.2.12/ChemoSpec/R/hmapSpectra.R | 99 +- ChemoSpec-5.2.12/ChemoSpec/R/hypTestScores.R | 82 - ChemoSpec-5.2.12/ChemoSpec/R/irlba_pcaSpectra.R | 119 +- ChemoSpec-5.2.12/ChemoSpec/R/isWholeNo.R | 22 ChemoSpec-5.2.12/ChemoSpec/R/labelExtremes3d.R | 79 - ChemoSpec-5.2.12/ChemoSpec/R/makeEllipsoid.R | 146 +-- ChemoSpec-5.2.12/ChemoSpec/R/matrix2SpectraObject.R | 203 ++-- ChemoSpec-5.2.12/ChemoSpec/R/mclust3D.R | 213 ++-- ChemoSpec-5.2.12/ChemoSpec/R/mclust3dSpectra.R | 73 - ChemoSpec-5.2.12/ChemoSpec/R/mclustSpectra.R | 126 +- ChemoSpec-5.2.12/ChemoSpec/R/normSpectra.R | 147 +-- ChemoSpec-5.2.12/ChemoSpec/R/normVec.R | 14 ChemoSpec-5.2.12/ChemoSpec/R/pcaDiag.R | 121 +- ChemoSpec-5.2.12/ChemoSpec/R/plot2Loadings.R | 82 - ChemoSpec-5.2.12/ChemoSpec/R/plotLoadings.R | 100 +- ChemoSpec-5.2.12/ChemoSpec/R/plotScores3D.R | 160 +-- ChemoSpec-5.2.12/ChemoSpec/R/plotScoresRGL.R | 281 +++-- ChemoSpec-5.2.12/ChemoSpec/R/plotScoresStub.R | 4 ChemoSpec-5.2.12/ChemoSpec/R/plotScree2.R | 7 ChemoSpec-5.2.12/ChemoSpec/R/plotScreeStub.R | 4 ChemoSpec-5.2.12/ChemoSpec/R/plotSpectra.R | 92 - ChemoSpec-5.2.12/ChemoSpec/R/plotSpectraDist.R | 62 - ChemoSpec-5.2.12/ChemoSpec/R/plotSpectraJS.R | 256 ++--- ChemoSpec-5.2.12/ChemoSpec/R/q2rPCA.R | 36 ChemoSpec-5.2.12/ChemoSpec/R/r2qPCA.R | 28 ChemoSpec-5.2.12/ChemoSpec/R/r_pcaSpectra.R | 59 - ChemoSpec-5.2.12/ChemoSpec/R/readJEOLascii.R | 12 ChemoSpec-5.2.12/ChemoSpec/R/removeFreqStub.R | 2 ChemoSpec-5.2.12/ChemoSpec/R/removeGroupStub.R | 2 ChemoSpec-5.2.12/ChemoSpec/R/removeSampleStub.R | 2 ChemoSpec-5.2.12/ChemoSpec/R/rowDistStub.R | 4 ChemoSpec-5.2.12/ChemoSpec/R/sPlotSpectra.R | 97 +- ChemoSpec-5.2.12/ChemoSpec/R/s_pcaSpectra.R | 137 +- ChemoSpec-5.2.12/ChemoSpec/R/sampleDistStub.R |only ChemoSpec-5.2.12/ChemoSpec/R/seXy.R | 57 - ChemoSpec-5.2.12/ChemoSpec/R/sgfSpectra.R | 52 - ChemoSpec-5.2.12/ChemoSpec/R/splitSpectraGroups.R | 120 +- ChemoSpec-5.2.12/ChemoSpec/R/sumGroupsStub.R | 4 ChemoSpec-5.2.12/ChemoSpec/R/sumSpectraStub.R | 4 ChemoSpec-5.2.12/ChemoSpec/R/surveySpectra.R | 413 ++++---- ChemoSpec-5.2.12/ChemoSpec/R/surveySpectra2.R | 121 +- ChemoSpec-5.2.12/ChemoSpec/R/updateGroupsStub.R |only ChemoSpec-5.2.12/ChemoSpec/build/vignette.rds |binary ChemoSpec-5.2.12/ChemoSpec/data/SrE.IR.RData |binary ChemoSpec-5.2.12/ChemoSpec/data/SrE.NMR.RData |binary ChemoSpec-5.2.12/ChemoSpec/data/alignMUD.RData |binary ChemoSpec-5.2.12/ChemoSpec/data/metMUD1.RData |binary ChemoSpec-5.2.12/ChemoSpec/data/metMUD2.RData |binary ChemoSpec-5.2.12/ChemoSpec/inst/doc/ChemoSpec.pdf |binary ChemoSpec-5.2.12/ChemoSpec/inst/doc/IntroPCA.pdf |binary ChemoSpec-5.2.12/ChemoSpec/inst/tinytest/test_cleanArgs.R | 13 ChemoSpec-5.2.12/ChemoSpec/inst/tinytest/test_files2SpectraObject_JDX.R | 3 ChemoSpec-5.2.12/ChemoSpec/man/SrE.IR.Rd | 1 ChemoSpec-5.2.12/ChemoSpec/man/aovPCAscores.Rd | 5 ChemoSpec-5.2.12/ChemoSpec/man/aov_pcaSpectra.Rd | 9 ChemoSpec-5.2.12/ChemoSpec/man/baselineSpectra.Rd | 1 ChemoSpec-5.2.12/ChemoSpec/man/binSpectra.Rd | 1 ChemoSpec-5.2.12/ChemoSpec/man/c_pcaSpectra.Rd | 13 ChemoSpec-5.2.12/ChemoSpec/man/clupaSpectra.Rd | 13 ChemoSpec-5.2.12/ChemoSpec/man/colorSymbol.Rd | 3 ChemoSpec-5.2.12/ChemoSpec/man/cv_pcaSpectra.Rd | 15 ChemoSpec-5.2.12/ChemoSpec/man/evalClusters.Rd | 11 ChemoSpec-5.2.12/ChemoSpec/man/files2SpectraObject.Rd | 135 +- ChemoSpec-5.2.12/ChemoSpec/man/hcaSpectra.Rd | 13 ChemoSpec-5.2.12/ChemoSpec/man/hmapSpectra.Rd | 53 - ChemoSpec-5.2.12/ChemoSpec/man/hypTestScores.Rd | 10 ChemoSpec-5.2.12/ChemoSpec/man/irlba_pcaSpectra.Rd | 16 ChemoSpec-5.2.12/ChemoSpec/man/mclust3dSpectra.Rd | 25 ChemoSpec-5.2.12/ChemoSpec/man/mclustSpectra.Rd | 24 ChemoSpec-5.2.12/ChemoSpec/man/metMUD1.Rd | 2 ChemoSpec-5.2.12/ChemoSpec/man/normSpectra.Rd | 3 ChemoSpec-5.2.12/ChemoSpec/man/pcaDiag.Rd | 12 ChemoSpec-5.2.12/ChemoSpec/man/plot2Loadings.Rd | 9 ChemoSpec-5.2.12/ChemoSpec/man/plotScores3D.Rd | 17 ChemoSpec-5.2.12/ChemoSpec/man/plotScoresRGL.Rd | 27 ChemoSpec-5.2.12/ChemoSpec/man/plotSpectra.Rd | 33 ChemoSpec-5.2.12/ChemoSpec/man/plotSpectraDist.Rd | 16 ChemoSpec-5.2.12/ChemoSpec/man/plotSpectraJS.Rd | 3 ChemoSpec-5.2.12/ChemoSpec/man/r_pcaSpectra.Rd | 15 ChemoSpec-5.2.12/ChemoSpec/man/sPlotSpectra.Rd | 9 ChemoSpec-5.2.12/ChemoSpec/man/s_pcaSpectra.Rd | 18 ChemoSpec-5.2.12/ChemoSpec/man/sampleDist.Rd |only ChemoSpec-5.2.12/ChemoSpec/man/sgfSpectra.Rd | 17 ChemoSpec-5.2.12/ChemoSpec/man/splitSpectraGroups.Rd | 1 ChemoSpec-5.2.12/ChemoSpec/man/surveySpectra.Rd | 21 ChemoSpec-5.2.12/ChemoSpec/man/updateGroups.Rd |only 116 files changed, 3715 insertions(+), 3387 deletions(-)
Title: Interface to the California Data Exchange Center
Description: Connect to the California Data Exchange Center (CDEC)
Web Service <http://cdec.water.ca.gov/>. 'CDEC' provides a centralized
database to store, process, and exchange real-time hydrologic information
gathered by various cooperators throughout California. The 'CDEC' Web Service
<http://cdec.water.ca.gov/dynamicapp/wsSensorData> provides a data download
service for accessing historical records.
Author: Michael Koohafkan [aut, cre]
Maintainer: Michael Koohafkan <michael.koohafkan@gmail.com>
Diff between cder versions 0.2-1 dated 2020-01-13 and 0.2-2 dated 2020-01-24
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 15 ++++++++++++--- R/query.r | 16 +++++++--------- build/vignette.rds |binary man/cdec_query.Rd | 7 +++---- man/cdec_query_group.Rd | 7 +++---- 7 files changed, 34 insertions(+), 29 deletions(-)
More information about BioProbability at CRAN
Permanent link
Title: Algorithms for Quantitative Pedology
Description: The Algorithms for Quantitative Pedology (AQP) project was started in 2009 to organize a loosely-related set of concepts and source code on the topic of soil profile visualization, aggregation, and classification into this package (aqp). Over the past 8 years, the project has grown into a suite of related R packages that enhance and simplify the quantitative analysis of soil profile data. Central to the AQP project is a new vocabulary of specialized functions and data structures that can accommodate the inherent complexity of soil profile information; freeing the scientist to focus on ideas rather than boilerplate data processing tasks <doi:10.1016/j.cageo.2012.10.020>. These functions and data structures have been extensively tested and documented, applied to projects involving hundreds of thousands of soil profiles, and deeply integrated into widely used tools such as SoilWeb <https://casoilresource.lawr.ucdavis.edu/soilweb-apps/>. Components of the AQP project (aqp, soilDB, sharpshootR, soilReports packages) serve an important role in routine data analysis within the USDA-NRCS Soil Science Division. The AQP suite of R packages offer a convenient platform for bridging the gap between pedometric theory and practice.
Author: Dylan Beaudette [aut, cre],
Pierre Roudier [aut, ctb],
Andrew Brown [aut, ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between aqp versions 1.18.1 dated 2019-12-06 and 1.19 dated 2020-01-24
aqp-1.18.1/aqp/man/test_hz_logic.Rd |only aqp-1.19/aqp/DESCRIPTION | 10 - aqp-1.19/aqp/MD5 | 123 ++++++++------- aqp-1.19/aqp/NAMESPACE | 13 + aqp-1.19/aqp/NEWS.md | 148 +++++++++++-------- aqp-1.19/aqp/R/Class-SoilProfileCollection.R | 52 +----- aqp-1.19/aqp/R/SoilProfileCollection-iterators.R | 144 +++++++++++++++--- aqp-1.19/aqp/R/SoilProfileCollection-methods.R | 120 +++++++++++---- aqp-1.19/aqp/R/SoilProfileCollection-slice-methods.R | 3 aqp-1.19/aqp/R/SoilProfileCollection-spatial.R | 8 - aqp-1.19/aqp/R/aggregateColor.R | 17 +- aqp-1.19/aqp/R/checkHzDepthLogic.R |only aqp-1.19/aqp/R/colorContrast.R | 1 aqp-1.19/aqp/R/colorQuantiles.R | 20 +- aqp-1.19/aqp/R/contrastChart.R | 79 ++++++++-- aqp-1.19/aqp/R/denormalize.R | 2 aqp-1.19/aqp/R/estimatePSCS.R | 15 + aqp-1.19/aqp/R/estimateSoilDepth.R | 25 ++- aqp-1.19/aqp/R/evalMissingData.R | 44 ++++- aqp-1.19/aqp/R/generalize.hz.R | 2 aqp-1.19/aqp/R/getArgillicBounds.R | 77 ++++++++- aqp-1.19/aqp/R/glom.R | 89 ++++++++--- aqp-1.19/aqp/R/missingDataGrid.R | 2 aqp-1.19/aqp/R/munsell2rgb.R | 90 +++++++---- aqp-1.19/aqp/R/previewColors.R | 2 aqp-1.19/aqp/R/profile_compare.R | 29 ++- aqp-1.19/aqp/R/rebuildSPC.R | 41 +++++ aqp-1.19/aqp/R/setters.R | 135 ++++++++++++++++- aqp-1.19/aqp/R/sim.R | 6 aqp-1.19/aqp/R/soilColorIndices.R |only aqp-1.19/aqp/R/test_hz_logic.R | 9 - aqp-1.19/aqp/R/union.R | 13 + aqp-1.19/aqp/data/jacobs2000.rda |binary aqp-1.19/aqp/data/rowley2019.rda |only aqp-1.19/aqp/data/sp5.rda |binary aqp-1.19/aqp/man/SPC-utils.Rd | 28 +++ aqp-1.19/aqp/man/SoilProfileCollection-class.Rd | 7 aqp-1.19/aqp/man/aggregateColor.Rd | 4 aqp-1.19/aqp/man/argillic.clay.increase.depth.Rd | 6 aqp-1.19/aqp/man/barron.torrent.redness.LAB.Rd |only aqp-1.19/aqp/man/buntley.westin.index.Rd |only aqp-1.19/aqp/man/checkHzDepthLogic.Rd |only aqp-1.19/aqp/man/checkSPC.Rd | 4 aqp-1.19/aqp/man/contrastChart.Rd | 25 ++- aqp-1.19/aqp/man/estimatePSCS.Rd | 15 + aqp-1.19/aqp/man/evalMissingData.Rd | 27 ++- aqp-1.19/aqp/man/generalize.hz.Rd | 2 aqp-1.19/aqp/man/getArgillicBounds.Rd | 13 + aqp-1.19/aqp/man/glom.Rd | 4 aqp-1.19/aqp/man/harden.melanization.Rd |only aqp-1.19/aqp/man/harden.rubification.Rd |only aqp-1.19/aqp/man/horizonColorIndices.Rd |only aqp-1.19/aqp/man/hurst.redness.Rd |only aqp-1.19/aqp/man/hzDepthTests.Rd |only aqp-1.19/aqp/man/hzTransitionProbabilities.Rd | 7 aqp-1.19/aqp/man/munsell2rgb.Rd | 4 aqp-1.19/aqp/man/profileApply-methods.Rd | 50 +++++- aqp-1.19/aqp/man/profile_compare-methods.Rd | 8 - aqp-1.19/aqp/man/rowley2019.Rd |only aqp-1.19/aqp/man/thompson.bell.darkness.Rd |only aqp-1.19/aqp/tests/testthat/test-SPC-objects.R | 92 ++++++++++- aqp-1.19/aqp/tests/testthat/test-aggregateColor.R | 17 +- aqp-1.19/aqp/tests/testthat/test-argillic.R | 21 ++ aqp-1.19/aqp/tests/testthat/test-checkHzDepthLogic.R |only aqp-1.19/aqp/tests/testthat/test-color-conversion.R | 67 +++++++- aqp-1.19/aqp/tests/testthat/test-colorIndices.R |only aqp-1.19/aqp/tests/testthat/test-evalMissingData.R |only aqp-1.19/aqp/tests/testthat/test-glom.R | 2 aqp-1.19/aqp/tests/testthat/test-profileApply.R |only aqp-1.19/aqp/tests/testthat/test-pscs.R | 4 aqp-1.19/aqp/tests/testthat/test-sim.R |only aqp-1.19/aqp/tests/testthat/test-soil-depth.R | 10 + 72 files changed, 1313 insertions(+), 423 deletions(-)
Title: Vector Helpers
Description: Defines new notions of prototype and size that are
used to provide tools for consistent and well-founded type-coercion
and size-recycling, and are in turn connected to ideas of type- and
size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut, cre],
Lionel Henry [aut],
Davis Vaughan [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between vctrs versions 0.2.1 dated 2019-12-17 and 0.2.2 dated 2020-01-24
vctrs-0.2.1/vctrs/R/data.R |only vctrs-0.2.1/vctrs/man/unpack-assign.Rd |only vctrs-0.2.1/vctrs/tests/testthat/test-data.R |only vctrs-0.2.2/vctrs/DESCRIPTION | 15 vctrs-0.2.2/vctrs/MD5 | 321 +++-- vctrs-0.2.2/vctrs/NAMESPACE | 43 vctrs-0.2.2/vctrs/NEWS.md | 96 + vctrs-0.2.2/vctrs/R/arith.R | 4 vctrs-0.2.2/vctrs/R/assert.R | 12 vctrs-0.2.2/vctrs/R/bind.R | 6 vctrs-0.2.2/vctrs/R/c.R | 3 vctrs-0.2.2/vctrs/R/cast-list.R | 2 vctrs-0.2.2/vctrs/R/cast.R | 19 vctrs-0.2.2/vctrs/R/compare.R | 10 vctrs-0.2.2/vctrs/R/compat-friendly-type.R |only vctrs-0.2.2/vctrs/R/compat-lifecycle.R | 23 vctrs-0.2.2/vctrs/R/conditions.R | 173 ++- vctrs-0.2.2/vctrs/R/dictionary.R | 55 - vctrs-0.2.2/vctrs/R/equal.R | 20 vctrs-0.2.2/vctrs/R/group.R |only vctrs-0.2.2/vctrs/R/hash.R | 4 vctrs-0.2.2/vctrs/R/names.R | 24 vctrs-0.2.2/vctrs/R/print-str.R | 2 vctrs-0.2.2/vctrs/R/proxy.R |only vctrs-0.2.2/vctrs/R/recycle.R | 27 vctrs-0.2.2/vctrs/R/register-s3.R | 4 vctrs-0.2.2/vctrs/R/shape.R | 9 vctrs-0.2.2/vctrs/R/size.R | 3 vctrs-0.2.2/vctrs/R/slice.R | 101 - vctrs-0.2.2/vctrs/R/split.R |only vctrs-0.2.2/vctrs/R/subscript-loc.R |only vctrs-0.2.2/vctrs/R/subscript.R |only vctrs-0.2.2/vctrs/R/translate.R |only vctrs-0.2.2/vctrs/R/type-bare.R | 381 ++++++- vctrs-0.2.2/vctrs/R/type-data-frame.R | 35 vctrs-0.2.2/vctrs/R/type-date-time.R | 35 vctrs-0.2.2/vctrs/R/type-factor.R | 4 vctrs-0.2.2/vctrs/R/type-integer64.R | 2 vctrs-0.2.2/vctrs/R/type-list-of.R | 21 vctrs-0.2.2/vctrs/R/type-rcrd.R | 9 vctrs-0.2.2/vctrs/R/type-tibble.R | 12 vctrs-0.2.2/vctrs/R/type-vctr.R | 36 vctrs-0.2.2/vctrs/R/type.R | 2 vctrs-0.2.2/vctrs/R/type2.R | 26 vctrs-0.2.2/vctrs/R/utils.R | 116 -- vctrs-0.2.2/vctrs/R/vctrs-deprecated.R | 34 vctrs-0.2.2/vctrs/R/vctrs-package.R | 2 vctrs-0.2.2/vctrs/R/zzz.R | 30 vctrs-0.2.2/vctrs/README.md | 45 vctrs-0.2.2/vctrs/build/vctrs.pdf |binary vctrs-0.2.2/vctrs/build/vignette.rds |binary vctrs-0.2.2/vctrs/inst/doc/s3-vector.R | 3 vctrs-0.2.2/vctrs/inst/doc/s3-vector.Rmd | 55 - vctrs-0.2.2/vctrs/inst/doc/s3-vector.html | 67 - vctrs-0.2.2/vctrs/inst/doc/stability.R | 1 vctrs-0.2.2/vctrs/inst/doc/stability.Rmd | 59 - vctrs-0.2.2/vctrs/inst/doc/stability.html | 69 - vctrs-0.2.2/vctrs/inst/doc/type-size.Rmd | 46 vctrs-0.2.2/vctrs/inst/doc/type-size.html | 50 vctrs-0.2.2/vctrs/inst/include |only vctrs-0.2.2/vctrs/man/list_of.Rd | 10 vctrs-0.2.2/vctrs/man/new_date.Rd | 3 vctrs-0.2.2/vctrs/man/new_factor.Rd | 3 vctrs-0.2.2/vctrs/man/new_vctr.Rd | 16 vctrs-0.2.2/vctrs/man/obj_print.Rd | 4 vctrs-0.2.2/vctrs/man/s3_register.Rd | 10 vctrs-0.2.2/vctrs/man/vctrs-conditions.Rd | 78 + vctrs-0.2.2/vctrs/man/vctrs-package.Rd | 2 vctrs-0.2.2/vctrs/man/vec_as_index.Rd | 36 vctrs-0.2.2/vctrs/man/vec_as_location.Rd |only vctrs-0.2.2/vctrs/man/vec_as_names.Rd | 18 vctrs-0.2.2/vctrs/man/vec_as_subscript.Rd |only vctrs-0.2.2/vctrs/man/vec_assert.Rd | 3 vctrs-0.2.2/vctrs/man/vec_bind.Rd | 24 vctrs-0.2.2/vctrs/man/vec_c.Rd | 11 vctrs-0.2.2/vctrs/man/vec_cast.Rd | 3 vctrs-0.2.2/vctrs/man/vec_chop.Rd |only vctrs-0.2.2/vctrs/man/vec_data.Rd | 10 vctrs-0.2.2/vctrs/man/vec_duplicate.Rd | 2 vctrs-0.2.2/vctrs/man/vec_group.Rd |only vctrs-0.2.2/vctrs/man/vec_match.Rd | 2 vctrs-0.2.2/vctrs/man/vec_order.Rd | 6 vctrs-0.2.2/vctrs/man/vec_proxy_compare.Rd | 2 vctrs-0.2.2/vctrs/man/vec_proxy_equal.Rd | 3 vctrs-0.2.2/vctrs/man/vec_ptype.Rd | 2 vctrs-0.2.2/vctrs/man/vec_ptype2.Rd | 17 vctrs-0.2.2/vctrs/man/vec_recycle.Rd | 19 vctrs-0.2.2/vctrs/man/vec_size.Rd | 3 vctrs-0.2.2/vctrs/man/vec_slice.Rd | 8 vctrs-0.2.2/vctrs/man/vec_split.Rd | 5 vctrs-0.2.2/vctrs/man/vec_unique.Rd | 2 vctrs-0.2.2/vctrs/src/altrep-rle.c |only vctrs-0.2.2/vctrs/src/altrep-rle.h |only vctrs-0.2.2/vctrs/src/altrep.h |only vctrs-0.2.2/vctrs/src/bind.c | 38 vctrs-0.2.2/vctrs/src/c.c | 21 vctrs-0.2.2/vctrs/src/cast.c | 155 -- vctrs-0.2.2/vctrs/src/compare.c | 411 +++++-- vctrs-0.2.2/vctrs/src/conditions.c | 21 vctrs-0.2.2/vctrs/src/dictionary.c | 251 +--- vctrs-0.2.2/vctrs/src/dictionary.h | 7 vctrs-0.2.2/vctrs/src/equal.c | 596 ++++++++--- vctrs-0.2.2/vctrs/src/group.c |only vctrs-0.2.2/vctrs/src/growable.c | 24 vctrs-0.2.2/vctrs/src/hash.c | 97 - vctrs-0.2.2/vctrs/src/init.c | 113 +- vctrs-0.2.2/vctrs/src/names.c | 115 +- vctrs-0.2.2/vctrs/src/proxy-restore.c |only vctrs-0.2.2/vctrs/src/proxy.c | 73 + vctrs-0.2.2/vctrs/src/size-common.c | 46 vctrs-0.2.2/vctrs/src/size.c | 10 vctrs-0.2.2/vctrs/src/slice-array.c | 80 + vctrs-0.2.2/vctrs/src/slice-assign.c | 35 vctrs-0.2.2/vctrs/src/slice-chop.c |only vctrs-0.2.2/vctrs/src/slice.c | 496 +++------ vctrs-0.2.2/vctrs/src/slice.h |only vctrs-0.2.2/vctrs/src/split.c |only vctrs-0.2.2/vctrs/src/subscript-loc.c |only vctrs-0.2.2/vctrs/src/subscript-loc.h |only vctrs-0.2.2/vctrs/src/translate.c |only vctrs-0.2.2/vctrs/src/type-data-frame.c | 24 vctrs-0.2.2/vctrs/src/type-info.c | 42 vctrs-0.2.2/vctrs/src/type-list-of.c |only vctrs-0.2.2/vctrs/src/type.c | 24 vctrs-0.2.2/vctrs/src/type2.c | 7 vctrs-0.2.2/vctrs/src/utils.c | 341 +++++- vctrs-0.2.2/vctrs/src/utils.h | 80 + vctrs-0.2.2/vctrs/src/vctrs.h | 120 ++ vctrs-0.2.2/vctrs/tests/testthat.R | 6 vctrs-0.2.2/vctrs/tests/testthat/error |only vctrs-0.2.2/vctrs/tests/testthat/helper-conditions.R |only vctrs-0.2.2/vctrs/tests/testthat/helper-encoding.R |only vctrs-0.2.2/vctrs/tests/testthat/helper-expectations.R | 2 vctrs-0.2.2/vctrs/tests/testthat/helper-output.R | 3 vctrs-0.2.2/vctrs/tests/testthat/helper-rational.R | 10 vctrs-0.2.2/vctrs/tests/testthat/helper-s3.R | 75 + vctrs-0.2.2/vctrs/tests/testthat/helper-types.R | 10 vctrs-0.2.2/vctrs/tests/testthat/test-assert.R | 17 vctrs-0.2.2/vctrs/tests/testthat/test-bind.R | 47 vctrs-0.2.2/vctrs/tests/testthat/test-c.R | 35 vctrs-0.2.2/vctrs/tests/testthat/test-cast-error-nested.txt | 4 vctrs-0.2.2/vctrs/tests/testthat/test-cast.R | 87 - vctrs-0.2.2/vctrs/tests/testthat/test-compare.R | 136 ++ vctrs-0.2.2/vctrs/tests/testthat/test-conditions.R | 46 vctrs-0.2.2/vctrs/tests/testthat/test-dictionary.R | 129 +- vctrs-0.2.2/vctrs/tests/testthat/test-equal.R | 172 ++- vctrs-0.2.2/vctrs/tests/testthat/test-group.R |only vctrs-0.2.2/vctrs/tests/testthat/test-hash-hash.txt | 98 - vctrs-0.2.2/vctrs/tests/testthat/test-hash.R | 99 + vctrs-0.2.2/vctrs/tests/testthat/test-lifecycle-deprecated.R |only vctrs-0.2.2/vctrs/tests/testthat/test-names.R | 83 + vctrs-0.2.2/vctrs/tests/testthat/test-proxy-restore.R |only vctrs-0.2.2/vctrs/tests/testthat/test-proxy.R |only vctrs-0.2.2/vctrs/tests/testthat/test-recycle.R | 14 vctrs-0.2.2/vctrs/tests/testthat/test-shape.R | 14 vctrs-0.2.2/vctrs/tests/testthat/test-size.R | 5 vctrs-0.2.2/vctrs/tests/testthat/test-slice-assign.R | 95 + vctrs-0.2.2/vctrs/tests/testthat/test-slice.R | 505 ++++++++- vctrs-0.2.2/vctrs/tests/testthat/test-split.R |only vctrs-0.2.2/vctrs/tests/testthat/test-subscript-loc.R |only vctrs-0.2.2/vctrs/tests/testthat/test-subscript.R |only vctrs-0.2.2/vctrs/tests/testthat/test-translate.R |only vctrs-0.2.2/vctrs/tests/testthat/test-type-bare.R | 98 + vctrs-0.2.2/vctrs/tests/testthat/test-type-data-frame.R | 22 vctrs-0.2.2/vctrs/tests/testthat/test-type-date-time.R | 57 + vctrs-0.2.2/vctrs/tests/testthat/test-type-factor.R | 23 vctrs-0.2.2/vctrs/tests/testthat/test-type-group-rle.txt |only vctrs-0.2.2/vctrs/tests/testthat/test-type-list-of.R | 12 vctrs-0.2.2/vctrs/tests/testthat/test-type-rational.R | 6 vctrs-0.2.2/vctrs/tests/testthat/test-type-rcrd.R | 16 vctrs-0.2.2/vctrs/tests/testthat/test-type-tibble.R | 13 vctrs-0.2.2/vctrs/tests/testthat/test-type-vctr.R | 36 vctrs-0.2.2/vctrs/tests/testthat/test-type.R | 33 vctrs-0.2.2/vctrs/tests/testthat/test-type2.R | 52 vctrs-0.2.2/vctrs/tests/testthat/test-utils.R | 18 vctrs-0.2.2/vctrs/vignettes/s3-vector.Rmd | 55 - vctrs-0.2.2/vctrs/vignettes/stability.Rmd | 59 - vctrs-0.2.2/vctrs/vignettes/type-size.Rmd | 46 178 files changed, 5494 insertions(+), 2389 deletions(-)
Title: Financial Time Series Objects (Rmetrics)
Description: 'S4' classes and various tools for financial time series:
Basic functions such as scaling and sorting, subsetting,
mathematical operations and statistical functions.
Author: Diethelm Wuertz [aut] (original code),
Tobias Setz [cre],
Yohan Chalabi [ctb],
Martin Maechler [ctb] (<https://orcid.org/0000-0002-8685-9910>)
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between timeSeries versions 3042.102 dated 2017-11-17 and 3062.100 dated 2020-01-24
ChangeLog | 17 DESCRIPTION | 34 MD5 | 31 NAMESPACE | 2 R/aaa-utils.R |only R/base-applySeries.R | 4 R/base-cbind.R | 4 R/methods-plot.R | 2 R/methods-plot2.R | 95 +- R/timeSeries-readSeries.R | 2 R/timeSeries-slotDocumentation.R | 9 R/timeSeries-slotSeries.R | 3 R/utils-head.R | 49 - build/vignette.rds |binary inst/doc/timeSeriesPlot.R | 1438 +++++++++++++++++++-------------------- inst/doc/timeSeriesPlot.pdf |binary inst/doc/timeSeriesRefCard.pdf |binary 17 files changed, 858 insertions(+), 832 deletions(-)
Title: Moments of Folded and Doubly Truncated Multivariate
Distributions
Description: It computes arbitrary products moments (mean vector and variance-covariance matrix), for some double truncated (and folded) multivariate distributions. These distributions belong to the family of selection elliptical distributions, which includes well known skewed distributions as the unified skew-t distribution (SUT) and its particular cases as the extended skew-t (EST), skew-t (ST) and the symmetric student-t (T) distribution. Analogous normal cases unified skew-normal (SUN), extended skew-normal (ESN), skew-normal (SN), and symmetric normal (N) are also included. Density, probabilities and random deviates are also offered for these members.
References used for this package:
Arellano-Valle, R. B. & Genton, M. G. (2005). On fundamental skew distributions. Journal of Multivariate Analysis, 96, 93-116.
Galarza C.E., Matos L.A., Dey D.K. & Lachos V.H. (2019) On Moments of Folded and Truncated Multivariate Extended Skew-Normal Distributions. Technical report. ID 19-14. University of Connecticut. <https://stat.uconn.edu/tech-reports-2019/>.
Author: Christian E. Galarza, Raymond Kan and Victor H. Lachos
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between MomTrunc versions 5.63 dated 2020-01-19 and 5.69 dated 2020-01-24
DESCRIPTION | 15 +- MD5 | 34 +++--- NAMESPACE | 10 + R/AUX_MC.R | 264 +++++++++++++++++++++++++++++++------------------- R/AUX_optmeanvarTMD.R |only R/AUX_prob_opt.R | 4 R/RcppExports.R | 4 R/TN_mean.R | 7 - R/TSLCT_mv.R | 2 R/TSLCT_mv_MC.R |only R/TT_mv.R | 31 ----- R/USER_MCmeanvarTMD.R |only R/USER_meanvarTMD.R | 2 R/USER_rmvESN.R | 11 +- R/USER_rmvEST.R | 5 build/partial.rdb |binary man/MCmeanvarTMD.Rd |only man/meanvarTMD.Rd | 7 + src/RcppExports.cpp | 17 +++ src/my_functions.cpp | 55 ++++++++++ 20 files changed, 305 insertions(+), 163 deletions(-)
Title: Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Models
Description: Maximum likelihood estimation of the parameters of a fractionally
differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989);
including inference and basic methods. Some alternative algorithms to estimate "H".
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Chris Fraley [ctb, cph] (S original; Fortran code),
Friedrich Leisch [ctb] (R port,
<https://orcid.org/0000-0001-7278-1983>),
Valderio Reisen [ctb] (fdGPH() & fdSperio()),
Artur Lemonte [ctb] (fdGPH() & fdSperio()),
Rob Hyndman [ctb] (residuals() & fitted(),
<https://orcid.org/0000-0002-2140-5352>)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between fracdiff versions 1.5-0 dated 2020-01-16 and 1.5-1 dated 2020-01-24
fracdiff-1.5-0/fracdiff/tests/ex.Rout-32b |only fracdiff-1.5-0/fracdiff/tests/ex.Rout-64b |only fracdiff-1.5-1/fracdiff/ChangeLog | 5 fracdiff-1.5-1/fracdiff/DESCRIPTION | 10 fracdiff-1.5-1/fracdiff/MD5 | 16 - fracdiff-1.5-1/fracdiff/build/partial.rdb |binary fracdiff-1.5-1/fracdiff/tests/Valderio-ex.R | 4 fracdiff-1.5-1/fracdiff/tests/Valderio-ex.Rout.save | 13 - fracdiff-1.5-1/fracdiff/tests/ex.R | 108 ++++++++- fracdiff-1.5-1/fracdiff/tests/ex.Rout.save | 225 +++++++++----------- 10 files changed, 232 insertions(+), 149 deletions(-)
Title: Randomization Tests
Description: A collection of randomization tests, data sets and examples. The current version focuses on three testing problems and their implementation in empirical work. First, it facilitates the empirical researcher to test for particular hypotheses, such as comparisons of means, medians, and variances from k populations using robust permutation tests, which asymptotic validity holds under very weak assumptions, while retaining the exact rejection probability in finite samples when the underlying distributions are identical. Second, the description and implementation of a permutation test for testing the continuity assumption of the baseline covariates in the sharp regression discontinuity design (RDD) as in Canay and Kamat (2017) <https://goo.gl/UZFqt7>. More specifically, it allows the user to select a set of covariates and test the aforementioned hypothesis using a permutation test based on the Cramer-von Miss test statistic. Graphical inspection of the empirical CDF and histograms for the variables of interest is also supported in the package. Third, it provides the practitioner with an effortless implementation of a permutation test based on the martingale decomposition of the empirical process for testing for heterogeneous treatment effects in the presence of an estimated nuisance parameter.
Author: Mauricio Olivares [aut, cre],
Ignacio Sarmiento-Barbieri [aut]
Maintainer: Mauricio Olivares <maurice.olivares@gmail.com>
Diff between RATest versions 0.1.6 dated 2019-07-18 and 0.1.7 dated 2020-01-24
DESCRIPTION | 22 +++++---- MD5 | 22 ++++++--- NAMESPACE | 4 + R/PT.Khmaladze.MultTest.R |only R/PT.Khmaladze.fit.R | 79 +++++++++++++++++------------------ R/RPT.R | 7 --- R/group.action.R | 8 +-- R/randomization.test.R |only R/summary.PT.Khmaladze.MultTest.R |only inst/doc/RDperm.pdf |binary man/PT.Khmaladze.MultTest.Rd |only man/PT.Khmaladze.fit.Rd | 6 +- man/group.action.Rd | 8 +-- man/randomization.test.Rd |only man/summary.PT.Khmaladze.MultTest.Rd |only 15 files changed, 83 insertions(+), 73 deletions(-)
Title: Forecasting Long-Term Growth of the U.S. Stock Market and
Business Cycles
Description: A long-term forecast model called "Jubilee-Tectonic model" is implemented to forecast future returns of the U.S. stock market, Treasury yield, and gold price. The five-factor model forecasts the 10-year and 20-year future equity returns with high R-squared above 80 percent. It is based on linear growth and mean reversion characteristics in the U.S. stock market. This model also enhances the CAPE model by introducing the hypothesis that there are fault lines in the historical CAPE, which can be calibrated and corrected through statistical learning. In addition, it contains a module for business cycles, optimal interest rate, and recession forecasts.
Author: Stephen H-T. Lihn [aut, cre]
Maintainer: Stephen H-T. Lihn <stevelihn@gmail.com>
Diff between jubilee versions 0.3.1 dated 2019-07-19 and 0.3.3 dated 2020-01-24
DESCRIPTION | 13 - MD5 | 105 +++++++------- NAMESPACE | 4 NEWS.md | 10 + R/jubilee-adj-fault-line-method.R | 4 R/jubilee-constructor.R | 10 + R/jubilee-fred-data-method.R | 24 ++- R/jubilee-macro-cost-method.R | 4 R/jubilee-macro-predict-method.R | 4 R/jubilee-optimal-tb3ms-method.R | 4 R/jubilee-read-fred-file.R | 6 R/jubilee-repo-config.R | 17 ++ R/jubilee-repo-constructor.R | 192 ++++++++++++++++++++++---- R/jubilee-std-fault-line-method.R | 2 build/vignette.rds |binary inst/doc/jubilee-tutorial.ltx | 92 +++++++----- inst/doc/jubilee-tutorial.pdf |binary inst/doc/recession-hmm.ltx |only inst/doc/recession-hmm.pdf |only inst/extdata/BAA.csv | 6 inst/extdata/CES0500000035.csv | 6 inst/extdata/CP.csv | 2 inst/extdata/FEDFUNDS.csv | 6 inst/extdata/Fig3-1.xls |binary inst/extdata/GDP.csv | 2 inst/extdata/GDPC1.csv | 2 inst/extdata/GOLDAMGBD228NLBM.csv | 6 inst/extdata/GS10.csv |only inst/extdata/IR3TED01USM156N.csv | 5 inst/extdata/POPTHM.csv | 6 inst/extdata/RECPROUSM156N.csv | 6 inst/extdata/SP500.csv |only inst/extdata/TB3MS.csv | 6 inst/extdata/TCU.csv | 7 inst/extdata/UNRATE.csv | 6 inst/extdata/USREC.csv | 6 inst/extdata/ie_data.xls |binary man/jubilee.fred_data.Rd | 4 man/jubilee.read_fred_file.Rd | 2 man/jubilee.repo.Rd | 7 vignettes/jubilee-tutorial.ltx | 92 +++++++----- vignettes/recession-hmm.ltx |only vignettes/z-jubi-tut-20y-smr-GSI-plot-1.pdf |binary vignettes/z-jubi-tut-20y-smr-YS-plot-1.pdf |binary vignettes/z-jubi-tut-20y-smr-raw-plot-1.pdf |binary vignettes/z-jubi-tut-demo-Yt-1.pdf |binary vignettes/z-jubi-tut-forecast-10y-X-1.pdf |binary vignettes/z-jubi-tut-forecast-10y-rtn-1.pdf |binary vignettes/z-jubi-tut-forecast-20y-X-1.pdf |binary vignettes/z-jubi-tut-forecast-20y-Y-1.pdf |binary vignettes/z-jubi-tut-forecast-20y-rtn-1.pdf |binary vignettes/z-jubi-tut-inflation-1.pdf |binary vignettes/z-jubi-tut-unrate-1.pdf |binary vignettes/z-jubi-tut-unrate-yoy-1.pdf |binary vignettes/z-recession-hmm-acc-plot-1.pdf |only vignettes/z-recession-hmm-mixture-plot-1.pdf |only vignettes/z-recession-hmm-mom-plot-1.pdf |only vignettes/z-recession-hmm-rec-prob-plot-1.pdf |only 58 files changed, 497 insertions(+), 171 deletions(-)
Title: Online Item Calibration, Scoring, and Evaluation of Model-Data
Fit in Item Response Theory (IRT) and Useful Functions Related
to IRT Models
Description: Calibrate online item parameters (i.e., pretest and operational items),
estimate examinees abilities, and examine the IRT model-data fit on item-level
in different ways as well as provide useful functions related to unidimensional
item response theory (IRT) models. For the online calibration, Stocking's
Method A (Ban, Hanson, Wang, Yi, & Harris (2011) <doi:10.1111/j.1745-3984.2001.tb01123.x>) is
provided. More methods of online calibration (e.g., fixed item parameter calibration)
will be included in the future updated version. For the ability estimation, several
popular scoring methods (e.g., MLE, EAP, and MAP) are implemented. In terms of
assessing the IRT model-data fit, one of distinguished features of this package
is that it gives not only well-known item fit statistics (e.g., chi-square (X2), likelihood
ratio chi-square (G2), infit and oufit statistics, and S-X2 statistic
(Ames & Penfield (2015) <doi:10.1111/emip.12067>)) but also graphical displays
to look at residuals between between the observed data and model-based predictions
(Hambleton, Swaminathan, & Rogers (1991, ISBN:9780803936478)).
In addition, there are many useful functions such as computing asymptotic
variance-covariance matrices of item parameter estimates (Li & Lissitz (2004)
<doi:10.1111/j.1745-3984.2004.tb01109.x>), importing item and/or ability parameters
from popular IRT software, generating simulated data, computing the conditional
distribution of observed scores using the Lord-Wingersky recursion formula
(Lord & Wingersky (1984) <doi:10.1207/s15324818ame1002_1>), computing
the loglikelihood of individual items, computing the loglikelihood of
abilities, computing item and test information functions, computing item and
test characteristic curve functions, and plotting item and test
characteristic curves and item and test information functions.
Author: Hwanggyu Lim [aut, cre],
Craig S. Wells [ctb]
Maintainer: Hwanggyu Lim <hglim83@gmail.com>
Diff between irtplay versions 1.3.0 dated 2019-11-18 and 1.4.0 dated 2020-01-24
DESCRIPTION | 53 - MD5 | 22 NEWS.md | 13 R/est_item.R | 27 R/est_score.R | 24 R/irtplay-package.R | 142 +++- R/loglike_score.R | 2 R/shape_df.R | 91 ++ R/trace.R | 52 + README.md | 1678 +++++++++++++++++++++++++++++++------------------ man/est_item.Rd | 19 man/irtplay-package.Rd | 143 +++- 12 files changed, 1572 insertions(+), 694 deletions(-)
Title: Call R from R
Description: It is sometimes useful to perform a computation in a
separate R process, without affecting the current R process at all.
This packages does exactly that.
Author: Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>),
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between callr versions 3.4.0 dated 2019-12-09 and 3.4.1 dated 2020-01-24
callr-3.4.0/callr/build |only callr-3.4.0/callr/inst/_pkgdown.yml |only callr-3.4.0/callr/inst/doc |only callr-3.4.0/callr/vignettes |only callr-3.4.1/callr/DESCRIPTION | 11 ++---- callr-3.4.1/callr/MD5 | 47 +++++++++++---------------- callr-3.4.1/callr/NEWS.md | 6 +++ callr-3.4.1/callr/R/eval-bg.R | 4 -- callr-3.4.1/callr/R/eval.R | 4 -- callr-3.4.1/callr/R/presets.R | 4 -- callr-3.4.1/callr/R/r-process.R | 4 -- callr-3.4.1/callr/R/r-session.R | 4 -- callr-3.4.1/callr/R/rcmd-process.R | 4 -- callr-3.4.1/callr/R/rcmd.R | 4 -- callr-3.4.1/callr/R/rscript.R | 4 -- callr-3.4.1/callr/R/setup.R | 8 ++++ callr-3.4.1/callr/man/r.Rd | 5 +- callr-3.4.1/callr/man/r_bg.Rd | 4 +- callr-3.4.1/callr/man/r_process.Rd | 4 +- callr-3.4.1/callr/man/r_session.Rd | 4 +- callr-3.4.1/callr/man/r_vanilla.Rd | 4 +- callr-3.4.1/callr/man/rcmd.Rd | 4 +- callr-3.4.1/callr/man/rcmd_process.Rd | 4 +- callr-3.4.1/callr/man/rscript_process.Rd | 4 +- callr-3.4.1/callr/tests/testthat/test-eval.R | 15 ++++++++ 25 files changed, 77 insertions(+), 75 deletions(-)
Title: Tidy Messy Data
Description: Tools to help to create tidy data, where each column is a
variable, each row is an observation, and each cell contains a single value.
'tidyr' contains tools for changing the shape (pivoting) and hierarchy
(nesting and 'unnesting') of a dataset, turning deeply nested lists
into rectangular data frames ('rectangling'), and extracting values out
of string columns. It also includes tools for working with missing values
(both implicit and explicit).
Author: Hadley Wickham [aut, cre],
Lionel Henry [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyr versions 1.0.0 dated 2019-09-11 and 1.0.2 dated 2020-01-24
DESCRIPTION | 8 MD5 | 88 ++++----- NEWS.md | 6 R/data.R | 2 R/nest-legacy.R | 2 R/pivot-long.R | 2 R/spread.R | 2 R/utils.R | 2 README.md | 2 build/tidyr.pdf |binary inst/doc/in-packages.R | 40 ++-- inst/doc/in-packages.html | 88 ++++----- inst/doc/nest.R | 18 - inst/doc/nest.html | 56 +++-- inst/doc/pivot.R | 98 +++++----- inst/doc/pivot.html | 374 +++++++++++++++++++-------------------- inst/doc/rectangle.R | 68 +++---- inst/doc/rectangle.html | 310 ++++++++++++++++---------------- inst/doc/tidy-data.R | 42 ++-- inst/doc/tidy-data.html | 149 +++++++-------- man/complete.Rd | 2 man/construction.Rd | 2 man/deprecated-se.Rd | 66 +++++- man/drop_na.Rd | 4 man/expand.Rd | 2 man/extract.Rd | 13 + man/gather.Rd | 15 + man/hoist.Rd | 30 ++- man/nest.Rd | 19 + man/nest_legacy.Rd | 3 man/pivot_longer.Rd | 19 + man/pivot_longer_spec.Rd | 28 ++ man/pivot_wider.Rd | 14 + man/pivot_wider_spec.Rd | 19 + man/reexports.Rd | 4 man/relig_income.Rd | 2 man/separate.Rd | 13 + man/separate_rows.Rd | 4 man/spread.Rd | 5 man/tidyr-package.Rd | 2 man/unite.Rd | 4 tests/testthat/test-gather.R | 3 tests/testthat/test-nest.R | 4 tests/testthat/test-pack.R | 2 tests/testthat/test-pivot-wide.R | 6 45 files changed, 880 insertions(+), 762 deletions(-)
Title: Robust Change-Point Tests
Description: Provides robust methods to detect change-points in uni- or multivariate time series. They can cope with corrupted data and heavy tails. One can detect changes in location, scale and dependence structure of a possibly multivariate time series. Procedures are based on Huberized versions of CUSUM tests proposed in Duerre and Fried (2019) <arXiv:1905.06201>.
Author: Sheila Goerz [aut, cre],
Alexander Duerre [ctb]
Maintainer: Sheila Goerz <sheila.goerz@tu-dortmund.de>
Diff between robcp versions 0.2.4 dated 2019-06-03 and 0.2.5 dated 2020-01-24
DESCRIPTION | 7 - MD5 | 10 +- NAMESPACE | 6 - R/robcp.R | 31 ++----- R/robcp2.R |only man/kthPair.Rd |only src/robcp.c | 249 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++- 7 files changed, 273 insertions(+), 30 deletions(-)
Title: R MPFR - Multiple Precision Floating-Point Reliable
Description: Arithmetic (via S4 classes and methods) for
arbitrary precision floating point numbers, including transcendental
("special") functions. To this end, the package interfaces to
the 'LGPL' licensed 'MPFR' (Multiple Precision Floating-Point Reliable) Library
which itself is based on the 'GMP' (GNU Multiple Precision) Library.
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Richard M. Heiberger [ctb] (formatHex(), *Bin, *Dec)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between Rmpfr versions 0.7-2 dated 2019-01-22 and 0.8-1 dated 2020-01-24
DESCRIPTION | 23 ++-- MD5 | 85 ++++++++------- NAMESPACE | 25 ++-- R/AllClasses.R | 5 R/Arith.R | 6 - R/Math.R | 9 - R/array.R | 27 +++-- R/as.R | 76 ++++++++++---- R/mpfr.R | 63 +++++++---- R/special-fun.R | 114 +++++++++++++++++++-- R/zzz.R | 2 TODO | 24 +++- build/partial.rdb |binary build/vignette.rds |binary configure | 3 configure.ac | 3 inst/NEWS.Rd | 93 +++++++++++++++++ inst/doc/Maechler_useR_2011-abstr.R | 1 inst/doc/Maechler_useR_2011-abstr.pdf |binary inst/doc/Rmpfr-pkg.R | 40 ++++--- inst/doc/Rmpfr-pkg.Rnw | 17 +++ inst/doc/Rmpfr-pkg.pdf |binary inst/doc/log1mexp-note.R | 1 inst/doc/log1mexp-note.pdf |binary man/distr-etc.Rd | 11 +- man/formatMpfr.Rd | 28 ++++- man/hjkMpfr.Rd | 1 man/igamma.Rd |only man/mpfr-class.Rd | 40 ++++++- man/mpfr-utils.Rd | 108 ++++++++++++++++++-- man/str.mpfr.Rd | 5 man/sumBinomMpfr.Rd | 2 src/Makevars.in | 10 + src/Ops.c | 1 src/Rmpfr_utils.h | 22 +++- src/Summary.c | 1 src/convert.c | 166 +++++++++++++++++++++---------- src/init.c | 8 + src/utils.c | 114 +++++++++++++++++---- tests/arith-ex.R | 4 tests/create.R | 12 +- tests/lowlevel.R | 182 +++++++++++++++++++++++++++------- tests/special-fun-ex.R | 75 +++++++++++++- vignettes/Rmpfr-pkg.Rnw | 17 +++ 44 files changed, 1124 insertions(+), 300 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 0.4.2 dated 2019-11-23 and 0.4.3 dated 2020-01-24
DESCRIPTION | 12 MD5 | 214 +++++----- NAMESPACE | 2 NEWS.md | 74 +++ R/call.R | 1 R/cnd-abort.R | 68 +-- R/cnd-error.R | 39 - R/cnd-handlers.R | 3 R/cnd-message.R | 2 R/cnd-signal.R | 24 - R/deparse.R | 20 R/dots.R | 2 R/env-special.R | 2 R/eval-tidy.R | 62 +- R/formula.R | 2 R/nse-force.R | 46 +- R/rlang.R | 30 - R/trace.R | 42 + R/utils.R | 8 README.md | 5 build/rlang.pdf |binary inst |only man/abort.Rd | 38 + man/as_data_mask.Rd | 2 man/as_label.Rd | 4 man/as_utf8_character.Rd | 2 man/call2.Rd | 2 man/call_modify.Rd | 9 man/catch_cnd.Rd | 2 man/chr_unserialise_unicode.Rd | 4 man/cnd.Rd | 3 man/dots_definitions.Rd | 7 man/dots_values.Rd | 16 man/duplicate.Rd | 2 man/dyn-dots.Rd | 4 man/env.Rd | 2 man/env_bind.Rd | 6 man/env_names.Rd | 2 man/env_poke.Rd | 7 man/env_print.Rd | 2 man/eval_tidy.Rd | 8 man/exec.Rd | 2 man/expr_label.Rd | 2 man/expr_print.Rd | 2 man/f_text.Rd | 2 man/fn_body.Rd | 4 man/invoke.Rd | 3 man/is_call.Rd | 1 man/is_copyable.Rd | 2 man/lifecycle.Rd | 4 man/list2.Rd | 16 man/nse-defuse.Rd | 65 ++- man/nse-force.Rd | 55 +- man/op-definition.Rd | 6 man/overscope_eval_next.Rd | 2 man/parse_expr.Rd | 6 man/quo_squash.Rd | 2 man/return_from.Rd | 2 man/rst_abort.Rd | 12 man/scoped_interactive.Rd | 6 man/search_envs.Rd | 2 man/splice.Rd | 24 - man/stack.Rd | 4 man/string.Rd | 2 man/tidyeval-data.Rd | 44 +- man/vector-construction.Rd | 2 man/vector-old-ctors.Rd | 2 man/with_handlers.Rd | 10 man/with_restarts.Rd | 6 src/export/init.c | 12 src/internal/dots.c | 54 ++ src/internal/env-binding.c | 2 src/internal/internal.c | 6 src/internal/internal.h | 2 src/internal/utils.c | 6 src/internal/utils.h | 2 src/lib/cnd.c | 2 src/lib/squash.c | 4 tests/testthat.R | 3 tests/testthat/fixtures/error-backtrace-conditionMessage.R | 5 tests/testthat/fixtures/error-backtrace-empty.R |only tests/testthat/fixtures/error-backtrace-parent.R | 5 tests/testthat/fixtures/error-backtrace-rethrown.R |only tests/testthat/fixtures/error-backtrace.R | 5 tests/testthat/helper-rlang.R | 13 tests/testthat/helper-trace.R | 1 tests/testthat/test-c-api.R | 1 tests/testthat/test-cnd-abort.R | 48 ++ tests/testthat/test-cnd-error-conditionMessage.txt | 10 tests/testthat/test-cnd-error-empty.txt |only tests/testthat/test-cnd-error-parent-default.txt | 2 tests/testthat/test-cnd-error-parent.txt | 19 tests/testthat/test-cnd-error.R | 3 tests/testthat/test-cnd-error.txt | 60 +- tests/testthat/test-cnd-signal.R | 19 tests/testthat/test-deparse.R | 28 - tests/testthat/test-env-binding.R | 15 tests/testthat/test-nse-force.R | 19 tests/testthat/test-trace-collapse-magrittr-before-after1.txt | 3 tests/testthat/test-trace-collapse-magrittr-before-after2.txt | 5 tests/testthat/test-trace-collapse-magrittr-before-after3.txt | 5 tests/testthat/test-trace-collapse-magrittr-children.txt | 8 tests/testthat/test-trace-collapse-magrittr-complete-leading2.txt | 4 tests/testthat/test-trace-collapse-magrittr-complete1.txt | 1 tests/testthat/test-trace-collapse-magrittr-incomplete-leading2.txt | 4 tests/testthat/test-trace-collapse-magrittr.txt | 4 tests/testthat/test-trace-collapse-magrittr2.txt | 4 tests/testthat/test-trace.R | 7 tests/testthat/test-utils.R | 7 tests/testthat/test-vec-squash.R | 5 110 files changed, 979 insertions(+), 494 deletions(-)
Title: Joint Modelling for Meta-Analytic (Multi-Study) Data
Description: Fits joint models of the type proposed by Henderson and colleagues
(2000) <doi:10.1093/biostatistics/1.4.465>, but extends to the multi-study,
meta-analytic case. Functions for meta-analysis of a single longitudinal and
a single time-to-event outcome from multiple studies using joint models.
Options to produce plots for multi study joint data, to pool joint model
fits from 'JM' and 'joineR' packages in a two stage meta-analysis, and to
model multi-study joint data in a one stage meta-analysis.
Author: Maria Sudell [cre, aut] (<https://orcid.org/0000-0002-7919-4981>),
Ruwanthi Kolamunnage-Dona [aut]
(<https://orcid.org/0000-0003-3886-6208>),
Catrin Tudur Smith [aut]
Maintainer: Maria Sudell <mesudell@liverpool.ac.uk>
Diff between joineRmeta versions 0.1.1 dated 2018-03-09 and 0.1.2 dated 2020-01-24
DESCRIPTION | 10 MD5 | 116 +-- NAMESPACE | 4 R/data.R | 153 ++-- R/jointmeta2.R | 1290 ++++++++++++++++++++------------------- R/jointmetaSE.R | 1426 +++++++++++++++++++++++++------------------- build/vignette.rds |binary data/JMfits.rda |binary data/JMfits2.rda |binary data/joineRfits.rda |binary data/joineRfits2.rda |binary data/onestage0.rda |binary data/onestage1.rda |binary data/onestage2.rda |binary data/onestage3.rda |binary data/onestage4.rda |binary inst/doc/joineRmeta.R | 21 inst/doc/joineRmeta.Rmd | 21 inst/doc/joineRmeta.html | 1181 +++++++++++++++++++++--------------- man/EMalgRandprop.Rd | 343 +++++----- man/JMfits.Rd | 139 ++-- man/JMfits2.Rd | 155 ++-- man/confint.jointmeta1SE.Rd | 136 ++-- man/fixef.jointmeta1.Rd | 105 +-- man/formula.jointmeta1.Rd | 139 ++-- man/jlike.Rd | 341 +++++----- man/joineRfits.Rd | 176 ++--- man/joineRfits2.Rd | 175 ++--- man/jointmeta1.Rd | 426 ++++++------- man/jointmeta1.object.Rd | 442 ++++++------- man/jointmeta1SE.object.Rd | 74 +- man/jointmeta2.Rd | 317 +++------ man/jointmetaSE.Rd | 214 +++--- man/jointmetaplot.Rd | 213 +++--- man/jointmetaplotall.Rd | 157 ++-- man/longst.Rd | 206 +++--- man/onestage0.Rd | 168 ++--- man/onestage1.Rd | 184 ++--- man/onestage2.Rd | 178 ++--- man/onestage3.Rd | 178 ++--- man/onestage4.Rd | 178 ++--- man/print.jointmeta1.Rd | 90 +- man/print.jointmeta1SE.Rd | 126 +-- man/rancov.Rd | 122 +-- man/ranef.jointmeta1.Rd | 136 ++-- man/removeafter.Rd | 152 ++-- man/sep.Rd | 220 +++--- man/simdat.Rd | 118 +-- man/simdat1randlevel.Rd | 295 ++++----- man/simdat2.Rd | 100 +-- man/simdat2randlevels.Rd | 340 +++++----- man/simdat3.Rd | 110 +-- man/simjointmeta.Rd | 509 ++++++++------- man/sortDat.Rd | 62 - man/summary.jointmeta1.Rd | 102 +-- man/survst.Rd | 154 ++-- man/tojointdata.Rd | 342 +++++----- man/vcov.jointmeta1SE.Rd | 114 +-- vignettes/joineRmeta.Rmd | 21 59 files changed, 6248 insertions(+), 5731 deletions(-)
Title: Generalized Weighted Quantile Sum Regression Random Subset
Description: Fits Weighted Quantile Sum Random Subset (WQSRS) regressions for continuous, binomial, multinomial and count outcomes.
Paul Curtin, Joshua Kellogg, Nadja Cech, Chris Gennings (2019) <doi:10.1080/03610918.2019.1577971>.
Author: Stefano Renzetti, Paul Curtin, Chris Gennings
Maintainer: Stefano Renzetti <stefano.renzetti88@gmail.com>
Diff between gWQSRS versions 1.0.0 dated 2019-08-30 and 1.1.0 dated 2020-01-24
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + R/gwqsrs.R | 5 ++++- R/gwqsrs_helpers.R | 46 ++++++++++++++++++++++++++++++---------------- man/gwqsrs.Rd | 30 ++++++++++++++++++++++++------ 6 files changed, 69 insertions(+), 33 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <jasson@toulouse.inra.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.5-13.5 dated 2019-03-11 and 0.5-13.6 dated 2020-01-24
gmp-0.5-13.5/gmp/configure.in |only gmp-0.5-13.6/gmp/DESCRIPTION | 8 gmp-0.5-13.6/gmp/MD5 | 34 gmp-0.5-13.6/gmp/cleanup | 5 gmp-0.5-13.6/gmp/configure | 3982 ++++++++++++++++++++++++++---- gmp-0.5-13.6/gmp/configure.ac |only gmp-0.5-13.6/gmp/man/Oakley.Rd | 4 gmp-0.5-13.6/gmp/src/Makevars.in | 4 gmp-0.5-13.6/gmp/src/Makevars.win | 2 gmp-0.5-13.6/gmp/src/bigintegerR.cc | 2 gmp-0.5-13.6/gmp/src/bigrationalR.cc | 29 gmp-0.5-13.6/gmp/src/bigrationalR.h | 2 gmp-0.5-13.6/gmp/src/bigvec.cc | 4 gmp-0.5-13.6/gmp/src/bigvec.h | 6 gmp-0.5-13.6/gmp/src/bigvec_q.h | 6 gmp-0.5-13.6/gmp/src/solve.h | 2 gmp-0.5-13.6/gmp/src/templateMatrix.h | 74 gmp-0.5-13.6/gmp/tests/gmp-test.R | 2 gmp-0.5-13.6/gmp/tests/gmp-test.Rout.save | 31 19 files changed, 3569 insertions(+), 628 deletions(-)
Title: Constrained B-Splines (Sparse Matrix Based)
Description: Qualitatively Constrained (Regression) Smoothing Splines via
Linear Programming and Sparse Matrices.
Author: Pin T. Ng <Pin.Ng@nau.edu> and Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cobs versions 1.3-3 dated 2020-01-16 and 1.3-4 dated 2020-01-24
cobs-1.3-3/cobs/tests/ex1.Rout-N-save |only cobs-1.3-3/cobs/tests/ex1Old.Rout-N-save |only cobs-1.3-3/cobs/tests/ex2-long.Rout-N-save |only cobs-1.3-3/cobs/tests/roof.Rout-N-save |only cobs-1.3-3/cobs/tests/temp.Rout-N-save |only cobs-1.3-3/cobs/tests/wind.Rout-N-save |only cobs-1.3-4/cobs/DESCRIPTION | 11 +++--- cobs-1.3-4/cobs/MD5 | 27 ++++++--------- cobs-1.3-4/cobs/R/drqssbc.R | 3 + cobs-1.3-4/cobs/R/qbsks.R | 9 ++--- cobs-1.3-4/cobs/R/scobs.R | 8 ++-- cobs-1.3-4/cobs/TODO | 3 - cobs-1.3-4/cobs/build |only cobs-1.3-4/cobs/man/DublinWind.Rd | 9 ++--- cobs-1.3-4/cobs/src/SR.c | 2 + cobs-1.3-4/cobs/tests/0_pt-ex.R | 16 ++++++--- cobs-1.3-4/cobs/tests/multi-constr.R | 30 +++++----------- cobs-1.3-4/cobs/tests/multi-constr.Rout.save | 48 ++++++++------------------- 18 files changed, 72 insertions(+), 94 deletions(-)
Title: Generalized Linear Mixed Models using Adaptive Gaussian
Quadrature
Description: Fits generalized linear mixed models for a single grouping factor under
maximum likelihood approximating the integrals over the random effects with an
adaptive Gaussian quadrature rule; Jose C. Pinheiro and Douglas M. Bates (1995)
<doi:10.1080/10618600.1995.10474663>.
Author: Dimitris Rizopoulos [aut, cre]
(<https://orcid.org/0000-0001-9397-0900>)
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between GLMMadaptive versions 0.6-5 dated 2019-09-26 and 0.6-8 dated 2020-01-24
DESCRIPTION | 8 ++--- MD5 | 30 ++++++++++---------- NAMESPACE | 6 ++-- R/Fit_Funs.R | 26 ----------------- R/methods.R | 56 +++++++++++++++++++++++++++++++++----- R/mixed_model.R | 3 +- build/vignette.rds |binary inst/doc/Custom_Models.R | 26 ++++++++--------- inst/doc/Custom_Models.html | 19 +++++------- inst/doc/GLMMadaptive_basics.R | 34 +++++++++++------------ inst/doc/GLMMadaptive_basics.html | 15 ++++------ inst/doc/Methods_MixMod.R | 56 +++++++++++++++++++------------------- inst/doc/Methods_MixMod.html | 15 ++++------ man/GLMMadaptive.Rd | 4 +- man/methods.Rd | 9 +++++- man/mixed_model.Rd | 1 16 files changed, 163 insertions(+), 145 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-23 0.1.10
Title: Convert Biological ID from RAP or MSU to SYMBOL for Oryza Sativa
Description: Convert one biological ID to another of rice (Oryza sativa).
Rice(Oryza sativa) has more than one form gene ID for the genome.
The two main gene ID for rice genome are the RAP (The Rice Annotation Project, <https://rapdb.dna.affrc.go.jp/>,
and the MSU(The Rice Genome Annotation Project, <http://rice.plantbiology.msu.edu/>.
All RAP rice gene IDs are of the form Os##g####### as explained on the website <https://rapdb.dna.affrc.go.jp/>.
All MSU rice gene IDs are of the form LOC_Os##g##### as explained on the website <http://rice.plantbiology.msu.edu/analyses_nomenclature.shtml>.
All SYMBOL rice gene IDs are the unique name on the NCBI(National Center for Biotechnology Information, <https://www.ncbi.nlm.nih.gov/>.
The TRANSCRIPTID, is the transcript id of rice, are of the form Os##t#######.
The researchers usually need to converter between various IDs. Such as converter RAP to SYMBOLS for function searching on NCBI.
There are a lot of websites with the function for converting RAP to MSU or MSU to RA, such as 'ID Converter' <https://rapdb.dna.affrc.go.jp/tools/converter>.
But it is difficult to convert super multiple IDs on these websites.
The package can convert all IDs between the three IDs (RAP, MSU and SYMBOL) regardless of the number.
Author: Xiang LI
Maintainer: Xiang LI <ynaulx@gmail.com>
Diff between riceidconverter versions 1.0.5 dated 2020-01-09 and 1.0.6 dated 2020-01-24
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/RiceIDConvert.R | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
More information about riceidconverter at CRAN
Permanent link
Title: Fast and Easy Data Cleaning
Description: Data cleaning functions for classes logical,
factor, numeric, character, currency and Date to make
data cleaning fast and easy. Relying on very few dependencies, it
provides smart guessing, but with user options to override
anything if needed.
Author: Matthijs S. Berends [aut, cre]
(<https://orcid.org/0000-0001-7620-1800>)
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Diff between cleaner versions 1.2.0 dated 2019-11-05 and 1.3.0 dated 2020-01-24
DESCRIPTION | 10 +++---- MD5 | 40 ++++++++++++++--------------- NAMESPACE | 4 ++ NEWS.md | 7 +++++ R/clean.R | 23 ++++++++++++---- R/currency.R | 2 - R/data.R | 2 - R/format_datetime.R | 10 +++++-- R/freq.R | 12 ++++---- R/helpers.R | 2 - R/percentage.R | 12 +++++++- R/regex_true_false.R | 2 - man/clean.Rd | 53 +++++++++++++++++++++++++++------------ man/currency.Rd | 20 +++++++++----- man/format_datetime.Rd | 7 +++-- man/freq.Rd | 39 ++++++++++++++++++++-------- tests/testthat.R | 2 - tests/testthat/test-clean.R | 9 +++++- tests/testthat/test-currency.R | 2 - tests/testthat/test-freq.R | 2 - tests/testthat/test-percentage.R | 2 - 21 files changed, 176 insertions(+), 86 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-17 1.1
2016-09-08 1.0.1
2016-08-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-10 1.3.2
2018-04-11 1.3.1
2017-12-07 1.3.0
2017-08-17 1.2.2
2017-08-01 1.2.1
2017-07-10 1.2.0
2017-05-14 1.1.1
2017-05-03 1.1.0
2017-04-14 1.0.2
2017-04-01 1.0.1
2017-03-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-13 0.99.1
2019-01-30 0.99.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-14 0.2.3
2019-07-13 0.2.2
2019-06-16 0.2.1
2018-05-19 0.2.0
2017-05-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-02 1.5.7
2019-03-03 1.5.6
2019-01-25 1.5.5
2018-12-16 1.5.4
2018-10-16 1.5.2
2018-10-08 1.5.1
2018-09-10 1.4.6
2017-10-10 1.3.2
2017-07-19 1.3.0
2017-06-21 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-29 1.0
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day ('GSOD') weather data
from the from the USA National Centers for Environmental Information
('NCEI'). Units are converted from from United States Customary System
('USCS') units to International System of Units ('SI'). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure ('es'), actual
vapour pressure ('ea') and relative humidity are calculated from the
original data and included in the final data set. The resulting metadata
include station identification information, country, state, latitude,
longitude, elevation, weather observations and associated flags. For
information on the 'GSOD' data from 'NCEI', please see the 'GSOD'
'readme.txt' file available from,
<http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Taras Kaduk [ctb] (Suggestion for handling bulk station downloads more
efficiently),
Gwenael Giboire [ctb] (Several bug reports in early versions and
testing feedback),
Łukasz Pawlik [ctb] (Reported bug in windspeed conversion calculation),
Ross Darnell [ctb] (Reported bug in 'Windows OS' versions causing
'GSOD' data untarring to fail)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 2.0.0 dated 2019-09-04 and 2.0.1 dated 2020-01-24
DESCRIPTION | 28 MD5 | 58 NEWS.md | 415 +-- R/GSODR-package.R | 2 R/get_GSOD.R | 2 R/get_inventory.R | 22 R/internal_functions.R | 27 R/process_csv.R | 2 R/update_station_list.R | 3 README.md | 10 build/vignette.rds |binary inst/doc/GSODR.Rmd | 731 ++--- inst/doc/GSODR.html | 2570 ++++++++++++++++---- inst/doc/Spatial.Rmd | 15 inst/doc/Spatial.html | 55 inst/doc/Working_with_spatial_and_climate_data.Rmd | 179 - inst/doc/Working_with_spatial_and_climate_data.html | 817 +++++- inst/extdata/isd_history.rda |binary man/GSODR.Rd | 3 man/get_GSOD.Rd | 11 man/get_inventory.Rd | 3 man/print.GSODR.Info.Rd | 2 tests/testthat/test-get_inventory.R | 23 vignettes/Ex5-1.png |binary vignettes/GSODR.Rmd | 731 ++--- vignettes/GSODR.Rmd.orig | 19 vignettes/Spatial.Rmd | 15 vignettes/Working_with_spatial_and_climate_data.Rmd | 179 - vignettes/comparison-1.png |binary vignettes/unnamed-chunk-1-1.png |binary 30 files changed, 4117 insertions(+), 1805 deletions(-)
Title: Make Fake Data
Description: Make fake data, supporting addresses, person names, dates,
times, colors, coordinates, currencies, digital object identifiers
('DOIs'), jobs, phone numbers, 'DNA' sequences, doubles and integers
from distributions and within a range.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Kyle Voytovich [aut],
Martin Pedersen [ctb],
Brooke Anderson [rev] (Brooke Anderson reviewed the package for
rOpenSci, see https://github.com/ropensci/onboarding/issues/94),
Tristan Mahr [rev] (Tristan Mahr reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/94),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between charlatan versions 0.3.0 dated 2018-10-18 and 0.4.0 dated 2020-01-24
charlatan-0.3.0/charlatan/inst/doc/charlatan_vignette.R |only charlatan-0.3.0/charlatan/inst/doc/charlatan_vignette.Rmd |only charlatan-0.3.0/charlatan/inst/doc/charlatan_vignette.html |only charlatan-0.3.0/charlatan/vignettes/charlatan_vignette.Rmd |only charlatan-0.4.0/charlatan/DESCRIPTION | 83 - charlatan-0.4.0/charlatan/LICENSE | 2 charlatan-0.4.0/charlatan/MD5 | 196 ++-- charlatan-0.4.0/charlatan/NAMESPACE | 13 charlatan-0.4.0/charlatan/NEWS.md | 19 charlatan-0.4.0/charlatan/R/address-provider-en_NZ.R |only charlatan-0.4.0/charlatan/R/address-provider.R | 87 + charlatan-0.4.0/charlatan/R/available_locales.R | 8 charlatan-0.4.0/charlatan/R/base-provider.R | 65 - charlatan-0.4.0/charlatan/R/charlatan-package.R | 3 charlatan-0.4.0/charlatan/R/color-provider.R | 44 - charlatan-0.4.0/charlatan/R/color.R | 10 charlatan-0.4.0/charlatan/R/company-provider.R | 54 - charlatan-0.4.0/charlatan/R/company.R | 5 charlatan-0.4.0/charlatan/R/coordinate-provider.R | 24 charlatan-0.4.0/charlatan/R/coordinates.R | 1 charlatan-0.4.0/charlatan/R/credit_card-provider.R | 30 charlatan-0.4.0/charlatan/R/credit_card.R | 1 charlatan-0.4.0/charlatan/R/currency-provider.R | 14 charlatan-0.4.0/charlatan/R/currency.R | 1 charlatan-0.4.0/charlatan/R/date_time.R | 1 charlatan-0.4.0/charlatan/R/datetime-provider.R | 382 +------- charlatan-0.4.0/charlatan/R/doi-provider.R | 9 charlatan-0.4.0/charlatan/R/doi.R | 1 charlatan-0.4.0/charlatan/R/element-provider.R | 15 charlatan-0.4.0/charlatan/R/elements.R | 1 charlatan-0.4.0/charlatan/R/file-provider.R | 60 - charlatan-0.4.0/charlatan/R/fraudster.R | 70 + charlatan-0.4.0/charlatan/R/generate.R | 2 charlatan-0.4.0/charlatan/R/internet-provider-en_NZ.R |only charlatan-0.4.0/charlatan/R/internet-provider.R | 144 +-- charlatan-0.4.0/charlatan/R/job.R | 6 charlatan-0.4.0/charlatan/R/jobs-provider.R | 37 charlatan-0.4.0/charlatan/R/lorem-provider.R | 124 +- charlatan-0.4.0/charlatan/R/misc-provider.R | 131 -- charlatan-0.4.0/charlatan/R/missing-data-provider.R | 22 charlatan-0.4.0/charlatan/R/missing.R | 1 charlatan-0.4.0/charlatan/R/name.R | 4 charlatan-0.4.0/charlatan/R/numerics-provider.R | 54 - charlatan-0.4.0/charlatan/R/person-provider-en_NZ.R |only charlatan-0.4.0/charlatan/R/person-provider.R | 108 +- charlatan-0.4.0/charlatan/R/phone-number-provider-all.R | 227 +++++ charlatan-0.4.0/charlatan/R/phone_number.R | 4 charlatan-0.4.0/charlatan/R/phonenumbers-provider.R | 64 - charlatan-0.4.0/charlatan/R/sequence-provider.R | 19 charlatan-0.4.0/charlatan/R/sequences.R | 1 charlatan-0.4.0/charlatan/R/taxonomy-provider.R | 24 charlatan-0.4.0/charlatan/R/taxonomy.R | 1 charlatan-0.4.0/charlatan/R/useragent-provider.R | 60 - charlatan-0.4.0/charlatan/R/zzz.R | 2 charlatan-0.4.0/charlatan/README.md | 144 +-- charlatan-0.4.0/charlatan/build/vignette.rds |binary charlatan-0.4.0/charlatan/data/available_locales_df.rda |binary charlatan-0.4.0/charlatan/inst/doc/charlatan.R |only charlatan-0.4.0/charlatan/inst/doc/charlatan.Rmd |only charlatan-0.4.0/charlatan/inst/doc/charlatan.html |only charlatan-0.4.0/charlatan/inst/doc/contributing.R |only charlatan-0.4.0/charlatan/inst/doc/contributing.Rmd |only charlatan-0.4.0/charlatan/inst/doc/contributing.html |only charlatan-0.4.0/charlatan/inst/examples |only charlatan-0.4.0/charlatan/man/AddressProvider.Rd | 260 +++++ charlatan-0.4.0/charlatan/man/BaseProvider.Rd | 270 +++++- charlatan-0.4.0/charlatan/man/ColorProvider.Rd | 171 +++ charlatan-0.4.0/charlatan/man/CompanyProvider.Rd | 179 +++- charlatan-0.4.0/charlatan/man/CoordinateProvider.Rd | 76 + charlatan-0.4.0/charlatan/man/CreditCardProvider.Rd | 152 +++ charlatan-0.4.0/charlatan/man/CurrencyProvider.Rd | 74 + charlatan-0.4.0/charlatan/man/DOIProvider.Rd | 71 + charlatan-0.4.0/charlatan/man/DateTimeProvider.Rd | 224 ++++- charlatan-0.4.0/charlatan/man/ElementProvider.Rd | 74 + charlatan-0.4.0/charlatan/man/FileProvider.Rd | 188 +++- charlatan-0.4.0/charlatan/man/FraudsterClient.Rd |only charlatan-0.4.0/charlatan/man/InternetProvider.Rd | 437 +++++++++- charlatan-0.4.0/charlatan/man/JobProvider.Rd | 114 ++ charlatan-0.4.0/charlatan/man/LoremProvider.Rd | 355 ++++++-- charlatan-0.4.0/charlatan/man/MiscProvider.Rd | 113 ++ charlatan-0.4.0/charlatan/man/MissingDataProvider.Rd | 80 + charlatan-0.4.0/charlatan/man/NumericsProvider.Rd | 218 +++- charlatan-0.4.0/charlatan/man/PersonProvider.Rd | 268 +++++- charlatan-0.4.0/charlatan/man/PhoneNumberProvider.Rd | 121 ++ charlatan-0.4.0/charlatan/man/SequenceProvider.Rd | 62 + charlatan-0.4.0/charlatan/man/TaxonomyProvider.Rd | 108 ++ charlatan-0.4.0/charlatan/man/UserAgentProvider.Rd | 250 +++++ charlatan-0.4.0/charlatan/man/ch_color.Rd | 13 charlatan-0.4.0/charlatan/man/ch_company.Rd | 7 charlatan-0.4.0/charlatan/man/ch_credit.Rd | 3 charlatan-0.4.0/charlatan/man/ch_currency.Rd | 3 charlatan-0.4.0/charlatan/man/ch_doi.Rd | 3 charlatan-0.4.0/charlatan/man/ch_gene_sequence.Rd | 3 charlatan-0.4.0/charlatan/man/ch_job.Rd | 8 charlatan-0.4.0/charlatan/man/ch_missing.Rd | 3 charlatan-0.4.0/charlatan/man/ch_name.Rd | 6 charlatan-0.4.0/charlatan/man/ch_phone_number.Rd | 6 charlatan-0.4.0/charlatan/man/charlatan-package.Rd | 2 charlatan-0.4.0/charlatan/man/coordinates.Rd | 5 charlatan-0.4.0/charlatan/man/date_time.Rd | 3 charlatan-0.4.0/charlatan/man/elements.Rd | 3 charlatan-0.4.0/charlatan/man/taxonomy.Rd | 3 charlatan-0.4.0/charlatan/tests/testthat/test-charlatan_locales.R | 20 charlatan-0.4.0/charlatan/tests/testthat/test-internet.R | 4 charlatan-0.4.0/charlatan/tests/testthat/test-person.R | 2 charlatan-0.4.0/charlatan/tests/testthat/test-phonenumber.R |only charlatan-0.4.0/charlatan/vignettes/charlatan.Rmd |only charlatan-0.4.0/charlatan/vignettes/contributing.Rmd |only 108 files changed, 4614 insertions(+), 1726 deletions(-)
Title: R Time Series Intelligent Data Storage
Description: A tool that allows to download and save historical time series data
for future use offline. The intelligent updating functionality will only download
the new available information; thus, saving you time and Internet bandwidth.
It will only re-download the full data-set if any inconsistencies are detected.
This package supports following data provides: 'Yahoo' (<https://finance.yahoo.com>),
'FRED' (<https://fred.stlouisfed.org>), 'Quandl' (<https://www.quandl.com>),
'AlphaVantage' (<https://www.alphavantage.co>), 'Tiingo' (<https://www.tiingo.com>).
Author: RTSVizTeam [aut, cph],
Irina Kapler [cre]
Maintainer: Irina Kapler <irkapler@gmail.com>
Diff between rtsdata versions 0.1.1 dated 2018-10-26 and 0.1.2 dated 2020-01-24
DESCRIPTION | 10 LICENSE | 2 MD5 | 48 +-- NAMESPACE | 2 NEWS.md | 11 R/ds.r | 513 ++++++++++++++++---------------- R/functionality.r | 19 - R/storage.r | 635 ++++++++++++++++++++-------------------- R/utils.r | 2 README.md | 21 + man/DataSource.Rd | 123 +++---- man/DataSources.Rd | 80 ++--- man/DefaultStorageOptions.Rd | 68 ++-- man/Functionality.Rd | 56 +-- man/ds.get.url.Rd | 59 +-- man/ds.load.csv.Rd | 50 +-- man/ds.storage.database.Rd | 60 +-- man/ds.storage.file.csv.Rd | 69 ++-- man/ds.storage.file.csv.load.Rd | 59 +-- man/ds.storage.file.csv.save.Rd | 56 +-- man/ds.storage.file.exists.Rd | 46 +- man/ds.storage.file.rdata.Rd | 61 ++- man/ds.storage.file.ticker.Rd | 46 +- man/getSymbols.Rd | 160 +++++----- man/rtsdata.Rd | 149 ++++----- 25 files changed, 1238 insertions(+), 1167 deletions(-)
Title: React Helpers
Description: Make it easy to use 'React' in R with 'htmlwidget' scaffolds,
helper dependency functions, an embedded 'Babel' 'transpiler',
and examples.
Author: Facebook Inc [aut, cph] (React library in lib,
https://facebook.github.io/react; see AUTHORS for full list of
contributors),
Michel Weststrate [aut, cph] (mobx library in lib,
https://github.com/mobxjs),
Kent Russell [aut, cre] (R interface),
Alan Dipert [aut] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between reactR versions 0.4.1 dated 2019-07-07 and 0.4.2 dated 2020-01-24
DESCRIPTION | 10 MD5 | 48 +-- NAMESPACE | 2 NEWS.md | 6 R/meta.R | 2 README.md | 7 build/vignette.rds |binary inst/doc/intro_htmlwidgets.html | 4 inst/doc/intro_inputs.html | 4 inst/doc/intro_reactR.html | 531 +++++++++++++++++++------------------- inst/www/core-js/package.json | 151 +++++----- inst/www/core-js/shim.min.js | 18 - inst/www/react/react-dom.min.js | 442 ++++++++++++++++--------------- inst/www/react/react.min.js | 51 +-- man/React.Rd | 66 ++-- man/babel_transform.Rd | 46 +-- man/component.Rd | 62 ++-- man/createReactShinyInput.Rd | 104 +++---- man/html_dependency_corejs.Rd | 26 - man/html_dependency_mobx.Rd | 144 +++++----- man/html_dependency_react.Rd | 84 +++--- man/html_dependency_reacttools.Rd | 26 - man/reactMarkup.Rd | 42 +-- man/scaffoldReactShinyInput.Rd | 54 +-- man/scaffoldReactWidget.Rd | 54 +-- 25 files changed, 1024 insertions(+), 960 deletions(-)
Title: Pretty, Human Readable Formatting of Quantities
Description: Pretty, human readable formatting of quantities.
Time intervals: '1337000' -> '15d 11h 23m 20s'.
Vague time intervals: '2674000' -> 'about a month ago'.
Bytes: '1337' -> '1.34 kB'.
Author: Gabor Csardi
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between prettyunits versions 1.1.0 dated 2020-01-09 and 1.1.1 dated 2020-01-24
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS.md | 5 +++++ R/sizes.R | 10 ++++++---- README.md | 4 ++-- tests/testthat/test-bytes.r | 20 ++++++++++++++++++-- 6 files changed, 42 insertions(+), 19 deletions(-)
Title: Principal Components Analysis using NIPALS or Weighted EMPCA,
with Gram-Schmidt Orthogonalization
Description: Principal Components Analysis of a matrix using Non-linear Iterative Partial Least Squares or weighted Expectation Maximization PCA with Gram-Schmidt orthogonalization of the scores and loadings. Optimized for speed. See Andrecut (2009) <doi:10.1089/cmb.2008.0221>.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between nipals versions 0.5 dated 2018-10-24 and 0.7 dated 2020-01-24
nipals-0.5/nipals/inst/doc/nipals_algorithm.pdf |only nipals-0.5/nipals/inst/doc/nipals_comparisons.pdf |only nipals-0.5/nipals/inst/doc/nipals_optimization.pdf |only nipals-0.5/nipals/tests/testthat/test-misc.R |only nipals-0.7/nipals/DESCRIPTION | 18 - nipals-0.7/nipals/MD5 | 56 +++-- nipals-0.7/nipals/NAMESPACE | 5 nipals-0.7/nipals/NEWS.md | 33 ++- nipals-0.7/nipals/R/empca.R |only nipals-0.7/nipals/R/nipals.R | 89 ++++---- nipals-0.7/nipals/build/vignette.rds |binary nipals-0.7/nipals/inst/doc/empca_notes.R |only nipals-0.7/nipals/inst/doc/empca_notes.Rmd |only nipals-0.7/nipals/inst/doc/empca_notes.html |only nipals-0.7/nipals/inst/doc/nipals_algorithm.Rmd | 14 - nipals-0.7/nipals/inst/doc/nipals_algorithm.html |only nipals-0.7/nipals/inst/doc/nipals_comparisons.R | 51 ++-- nipals-0.7/nipals/inst/doc/nipals_comparisons.Rmd | 69 ++++-- nipals-0.7/nipals/inst/doc/nipals_comparisons.html |only nipals-0.7/nipals/inst/doc/nipals_optimization.R | 36 +-- nipals-0.7/nipals/inst/doc/nipals_optimization.Rmd | 26 +- nipals-0.7/nipals/inst/doc/nipals_optimization.html |only nipals-0.7/nipals/man/empca.Rd |only nipals-0.7/nipals/man/figures |only nipals-0.7/nipals/man/nipals.Rd | 196 ++++++++++-------- nipals-0.7/nipals/man/uscrime.Rd | 114 +++++----- nipals-0.7/nipals/tests/testthat/setup-expectations.R |only nipals-0.7/nipals/tests/testthat/test-empca.R |only nipals-0.7/nipals/tests/testthat/test-nipals.R |only nipals-0.7/nipals/tests/testthat/test-uscrime.R | 34 ++- nipals-0.7/nipals/vignettes/empca_notes.Rmd |only nipals-0.7/nipals/vignettes/nipals.bib | 10 nipals-0.7/nipals/vignettes/nipals_algorithm.Rmd | 14 - nipals-0.7/nipals/vignettes/nipals_comparisons.Rmd | 69 ++++-- nipals-0.7/nipals/vignettes/nipals_optimization.Rmd | 26 +- 35 files changed, 507 insertions(+), 353 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. The latest
version of the package includes a native graphics device for creating
in-memory graphics or drawing onto images using pixel coordinates.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between magick versions 2.2 dated 2019-08-26 and 2.3 dated 2020-01-24
DESCRIPTION | 8 +- MD5 | 78 +++++++++++----------- NEWS | 8 ++ R/RcppExports.R | 4 - R/analysis.R | 2 R/animation.R | 24 +++++- R/composite.R | 5 + R/edit.R | 12 +++ R/init.R | 12 ++- R/morphology.R | 6 - build/vignette.rds |binary cleanup | 2 configure | 27 +++---- inst/doc/intro.R | 92 +++++++++++++------------- inst/doc/intro.Rmd | 14 ++- inst/doc/intro.html | 184 ++++++++++++++++++++++++++++++---------------------- man/analysis.Rd | 29 +++++--- man/animation.Rd | 46 +++++++++---- man/attributes.Rd | 28 +++++-- man/color.Rd | 39 +++++++---- man/composite.Rd | 51 ++++++++++---- man/device.Rd | 39 +++++++---- man/edges.Rd | 42 ++++++++--- man/editing.Rd | 55 +++++++++++---- man/effects.Rd | 28 +++++-- man/fx.Rd | 28 +++++-- man/geometry.Rd | 31 +++++--- man/magick.Rd | 29 +++++--- man/morphology.Rd | 52 ++++++++++---- man/ocr.Rd | 28 +++++-- man/options.Rd | 28 +++++-- man/painting.Rd | 48 +++++++++---- man/segmentation.Rd | 28 +++++-- man/thresholding.Rd | 8 +- man/transform.Rd | 28 +++++-- man/video.Rd | 28 +++++-- src/RcppExports.cpp | 13 ++- src/animation.cpp | 33 ++++++++- src/base.cpp | 11 ++- vignettes/intro.Rmd | 14 ++- 40 files changed, 813 insertions(+), 429 deletions(-)
Title: 'GitHub' 'API'
Description: Minimal client to access the 'GitHub' 'API'.
Author: Gábor Csárdi [cre, ctb],
Jennifer Bryan [aut],
Hadley Wickham [aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between gh versions 1.0.1 dated 2017-07-16 and 1.1.0 dated 2020-01-24
gh-1.0.1/gh/inst |only gh-1.1.0/gh/DESCRIPTION | 12 +- gh-1.1.0/gh/MD5 | 47 ++++---- gh-1.1.0/gh/NAMESPACE | 9 + gh-1.1.0/gh/NEWS.md |only gh-1.1.0/gh/R/errors.R |only gh-1.1.0/gh/R/gh_gql.R |only gh-1.1.0/gh/R/gh_request.R | 61 ++++++----- gh-1.1.0/gh/R/gh_response.R | 85 ++++++++++++--- gh-1.1.0/gh/R/gh_token.R |only gh-1.1.0/gh/R/gh_whoami.R | 37 +++--- gh-1.1.0/gh/R/git.R | 19 +-- gh-1.1.0/gh/R/package.R | 149 ++++++++++++++++----------- gh-1.1.0/gh/R/pagination.R | 57 +++++++++- gh-1.1.0/gh/R/print.R | 11 + gh-1.1.0/gh/R/utils.R | 55 +++++++++ gh-1.1.0/gh/README.md | 12 +- gh-1.1.0/gh/man/gh.Rd | 144 +++++++++++++++++--------- gh-1.1.0/gh/man/gh_gql.Rd |only gh-1.1.0/gh/man/gh_next.Rd | 15 +- gh-1.1.0/gh/man/gh_token.Rd |only gh-1.1.0/gh/man/gh_tree_remote.Rd | 4 gh-1.1.0/gh/man/gh_whoami.Rd | 44 +++---- gh-1.1.0/gh/man/slugify_url.Rd |only gh-1.1.0/gh/tests/testthat.R | 6 - gh-1.1.0/gh/tests/testthat/helper-offline.R | 19 ++- gh-1.1.0/gh/tests/testthat/test-mock-repos.R | 29 +++++ gh-1.1.0/gh/tests/testthat/test-na-null.R |only gh-1.1.0/gh/tests/testthat/test-token.R |only 29 files changed, 563 insertions(+), 252 deletions(-)
Title: 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature
Selection Algorithms with a Sparse Matrix Support
Description: 'Rcpp' (free of 'Java'/'Weka') implementation of 'FSelector' entropy-based feature selection
algorithms based on an MDL discretization (Fayyad U. M., Irani K. B.: Multi-Interval Discretization of Continuous-Valued Attributes for Classification Learning.
In 13'th International Joint Conference on Uncertainly in Artificial Intelligence (IJCAI93), pages 1022-1029, Chambery, France, 1993.) <https://www.ijcai.org/Proceedings/93-2/Papers/022.pdf>
with a sparse matrix support.
Author: Zygmunt Zawadzki [aut, cre],
Marcin Kosinski [aut],
Krzysztof Slomczynski [ctb],
Damian Skrzypiec [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between FSelectorRcpp versions 0.3.1 dated 2019-04-22 and 0.3.3 dated 2020-01-24
DESCRIPTION | 10 ++-- MD5 | 46 +++++++++++----------- R/information_gain.R | 3 - build/vignette.rds |binary inst/doc/benchmarks_discretize.R | 2 inst/doc/benchmarks_discretize.html | 36 +++++++++++++++-- inst/doc/get_started.R | 3 - inst/doc/get_started.Rmd | 3 - inst/doc/get_started.html | 65 ++++++++++++++++++++++--------- inst/doc/integer-variables.R | 8 +-- inst/doc/integer-variables.html | 68 +++++++++++++++++++++++---------- inst/include/FSelector.h | 6 -- inst/include/cutoff/cutOff.h | 2 inst/include/discretize/discretize.h | 17 ++++---- inst/include/entropy/entropy.h | 4 - man/discretize.Rd | 10 +++- man/feature_search.Rd | 13 ++++-- man/information_gain.Rd | 14 +++++- src/Makevars | 3 - src/Makevars.win | 3 - src/information_gain.cpp | 7 +-- src/init.c | 8 +-- tests/testthat/test-information_gain.R | 38 ++++++++++++++++++ vignettes/get_started.Rmd | 3 - 24 files changed, 255 insertions(+), 117 deletions(-)
Title: Simple, Multiple and Joint Correspondence Analysis
Description: Computation and visualization of simple, multiple and joint correspondence analysis.
Author: Michael Greenacre [aut],
Oleg Nenadic [aut, cre],
Michael Friendly [ctb]
Maintainer: Oleg Nenadic <onenadi@uni-goettingen.de>
Diff between ca versions 0.71 dated 2018-10-10 and 0.71.1 dated 2020-01-24
DESCRIPTION | 11 ++++------- MD5 | 6 +++--- R/print.ca.r | 2 +- R/print.mjca.r | 2 +- 4 files changed, 9 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-17 0.4-16
2016-03-18 0.4-13
2014-05-16 0.4-10
2013-10-31 0.4-9
2012-07-26 0.4-8
2012-04-28 0.4-7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-10 0.1.4
2019-04-06 0.1.3
Title: Analysis of Longitudinal Data with Irregular Observation Times
Description: Analysis of longitudinal data for which the times of observation are random variables that are potentially associated with the outcome process. The package includes inverse-intensity weighting methods (Lin H, Scharfstein DO, Rosenheck RA (2004) <doi:10.1111/j.1467-9868.2004.b5543.x>) and multiple outputation (Pullenayegum EM (2016) <doi:10.1002/sim.6829>).
Author: Eleanor Pullenayegum
Maintainer: Eleanor Pullenayegum <eleanor.pullenayegum@sickkids.ca>
Diff between IrregLong versions 0.1.0 dated 2019-02-11 and 0.2.0 dated 2020-01-24
DESCRIPTION | 12 MD5 | 35 NAMESPACE | 9 R/IIWcode.R | 681 +++++++++++++------ build/vignette.rds |binary inst/doc/Irreglong-vignette.R | 252 ++++--- inst/doc/Irreglong-vignette.Rmd | 246 ++++-- inst/doc/Irreglong-vignette.html | 1266 ++++++++++++++++++++---------------- man/Liang.Rd | 156 +++- man/abacus.plot.Rd |only man/addcensoredrows.Rd | 98 +- man/iiw.Rd | 98 +- man/iiw.weights.Rd | 177 ++--- man/iiwgee.Rd | 185 ++--- man/lagfn.Rd | 66 - man/mo.Rd | 160 ++-- man/outputation.Rd | 129 +-- vignettes/IrregLongVignetteRefs.bib | 12 vignettes/Irreglong-vignette.Rmd | 246 ++++-- 19 files changed, 2314 insertions(+), 1514 deletions(-)
Title: Tools for Intuitive and Flexible Statistical Analysis Workflows
Description: Contains flexible and intuitive functions to assist in carrying out tasks in a statistical analysis and to get from the raw data to presentation-ready results. A user-friendly interface is used in specialized functions that are aimed at common tasks such as building a univariate descriptive table for variables in a dataset. These high-level functions are built on a collection of low(er)-level functions that may be useful for aspects of a custom statistical analysis workflow or for general programming use.
Author: Alex Zajichek [aut, cre]
Maintainer: Alex Zajichek <alexzajichek@gmail.com>
Diff between cheese versions 0.0.1 dated 2019-04-01 and 0.0.2 dated 2020-01-24
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/cheese.html | 42 +++++++++++++++++++++++++++++++----------- man/divide.Rd | 10 ---------- 5 files changed, 39 insertions(+), 29 deletions(-)
Title: Computing General Equilibrium
Description: Developing general equilibrium models, computing general equilibrium and simulating economic dynamics with structural dynamic models in LI (2019, ISBN: 9787521804225) "General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press".
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu@staff.shu.edu.cn>
Diff between CGE versions 0.2.5 dated 2019-12-07 and 0.2.8 dated 2020-01-24
DESCRIPTION | 6 +++--- MD5 | 33 ++++++++++++++++++--------------- NAMESPACE | 2 ++ R/CD_A.R | 2 ++ R/CES_A.R | 6 ++++++ R/Leontief_mA.R | 5 ++++- R/iep.R |only R/sdm.R | 4 ++-- R/sdm_examples.R | 14 +++++++------- man/CD_A.Rd | 4 ++-- man/CD_mA.Rd | 2 +- man/CES_A.Rd | 6 +++--- man/CES_mA.Rd | 2 +- man/ChinaCGE2012.Rd | 2 +- man/Example.MWG.Exercise.15.B.6.Rd | 2 ++ man/Example6.13.Rd |only man/Leontief_mA.Rd | 16 +++++++++------- man/iep.Rd |only man/sdm.Rd | 23 ++++++++++++++--------- 19 files changed, 77 insertions(+), 52 deletions(-)