Title: Create 'Table 1' to Describe Baseline Characteristics
Description: Creates 'Table 1', i.e., description of baseline patient
characteristics, which is essential in every medical research.
Supports both continuous and categorical variables, as well as
p-values and standardized mean differences. Weighted data are
supported via the 'survey' package. See 'github' for a screen cast.
'tableone' was inspired by descriptive statistics functions in
'Deducer' , a Java-based GUI package by Ian Fellows. This package
does not require GUI or Java, and intended for command-line users.
Author: Kazuki Yoshida [cre, aut] (<https://orcid.org/0000-0002-2030-3549>),
Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>),
Jonathan J Chipman [ctb],
Justin Bohn [ctb],
Lucy DAgostino McGowan [ctb],
Malcolm Barrett [ctb],
Rune Haubo B Christensen [ctb],
gbouzill [ctb]
Maintainer: Kazuki Yoshida <kazukiyoshida@mail.harvard.edu>
Diff between tableone versions 0.11.0 dated 2020-03-01 and 0.11.1 dated 2020-03-08
DESCRIPTION | 11 - MD5 | 8 NEWS | 11 + inst/doc/smd.html | 274 ++++++++++++++++---------------- tests/testthat/test-svyCreateTableOne.R | 12 - 5 files changed, 165 insertions(+), 151 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions. References: a) Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>. b) Tsagris M. and Papadakis M. (2018). Forward regression in R: from the extreme slow to the extreme fast. Journal of Data Science, 16(4): 771--780. <doi:10.6339/JDS.201810_16(4).00006>.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Stefanos Fafalios, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis, John Burkardt, Changliang Zou, Kleanthi Lakiotaki and Christina Chatzipantsiou.
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast versions 1.9.8 dated 2019-12-12 and 1.9.9 dated 2020-03-08
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/data.frame.to_matrix.R | 14 ++++++-------- R/percentages_mle.R | 9 ++++----- R/poly.cor.R | 2 +- R/positive_mle.R | 2 +- inst/include/Rfast/matrix.hpp | 4 ++-- man/Rfast-package.Rd | 8 ++++++-- man/james.Rd | 2 +- man/mv.eeltest1.Rd | 2 +- man/mv.eeltest2.Rd | 2 +- man/odds.ratio.Rd | 2 +- man/pooled.cov.Rd | 2 +- man/sscov.Rd | 2 +- src/binarysearch.cpp | 2 +- 15 files changed, 45 insertions(+), 44 deletions(-)
Title: Regression Models and Utilities for Repeated Measures and Panel
Data
Description: Provides an object type and associated tools for storing and
wrangling panel data. Implements several methods for creating regression
models that take advantage of the unique aspects of
panel data. Among other capabilities, automates the "within-between"
(also known as "between-within" and "hybrid") panel regression specification
that combines the desirable aspects of both fixed effects and random effects
econometric models and fits them as multilevel models
(Allison, 2009 <doi:10.4135/9781412993869.d33>;
Bell & Jones, 2015 <doi:10.1017/psrm.2014.7>). These models can also be
estimated via generalized estimating equations
(GEE; McNeish, 2019 <doi:10.1080/00273171.2019.1602504>) and Bayesian
estimation is (optionally) supported via 'Stan'.
Supports estimation of asymmetric effects models via first differences
(Allison, 2019 <doi:10.1177/2378023119826441>) as well as a generalized
linear model extension thereof using GEE.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <long.1377@osu.edu>
Diff between panelr versions 0.7.1 dated 2019-07-12 and 0.7.2 dated 2020-03-08
DESCRIPTION | 13 - MD5 | 100 ++++---- NAMESPACE | 121 +++++---- NEWS.md | 10 R/asym.R | 35 ++ R/asym_gee.R | 2 R/diffs.R | 4 R/reshapers.R | 5 R/wb_gee.R | 4 R/wb_lmer.R | 79 ++++++ R/wb_stan.R | 19 - R/wb_utils.R | 10 build/vignette.rds |binary inst/doc/reshape.R | 32 +- inst/doc/reshape.html | 42 +-- inst/doc/wbm.R | 28 +- inst/doc/wbm.html | 134 +++++----- man/WageData.Rd | 104 ++++---- man/are_varying.Rd | 58 ++-- man/asym.Rd | 130 +++++----- man/asym_gee.Rd | 182 +++++++------- man/complete_data.Rd | 93 +++---- man/fdm.Rd | 128 +++++----- man/fdm_tidiers.Rd | 77 +++--- man/formula.wbm.Rd | 54 ++-- man/get_wave.Rd | 68 ++--- man/heise.Rd | 70 ++--- man/is_panel.Rd | 40 +-- man/line_plot.Rd | 132 +++++----- man/long_panel.Rd | 215 +++++++++-------- man/make_diff_data.Rd | 135 +++++------ man/make_wb_data.Rd | 207 ++++++++-------- man/model_frame.Rd | 62 ++--- man/nlsy.Rd | 90 +++---- man/nobs.wbm.Rd | 54 ++-- man/panel_data.Rd | 96 +++---- man/predict.wbgee.Rd | 78 +++--- man/predict.wbm.Rd | 185 ++++++++------- man/reexports.Rd | 40 +-- man/summary.panel_data.Rd | 65 ++--- man/teen_poverty.Rd | 102 ++++---- man/unpanel.Rd | 44 +-- man/wbgee.Rd | 334 ++++++++++++++------------- man/wbgee_tidiers.Rd | 74 +++--- man/wbm-class.Rd | 52 ++-- man/wbm.Rd | 539 ++++++++++++++++++++++---------------------- man/wbm_stan.Rd | 302 +++++++++++++----------- man/wbm_tidiers.Rd | 92 ++++--- man/widen_panel.Rd | 101 ++++---- tests/testthat/test-utils.R | 24 + tests/testthat/test_wbm.R | 2 51 files changed, 2505 insertions(+), 2162 deletions(-)
Title: Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Description: Functions that solve initial value problems of a system
of first-order ordinary differential equations ('ODE'), of
partial differential equations ('PDE'), of differential
algebraic equations ('DAE'), and of delay differential
equations. The functions provide an interface to the FORTRAN
functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK'
collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk'
and a C-implementation of solvers of the 'Runge-Kutta' family with
fixed or variable time steps. The package contains routines
designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D
partial differential equations ('PDE') that have been converted
to 'ODEs' by numerical differencing.
Author: Karline Soetaert [aut] (<https://orcid.org/0000-0003-4603-7100>),
Thomas Petzoldt [aut, cre] (<https://orcid.org/0000-0002-4951-6468>),
R. Woodrow Setzer [aut] (<https://orcid.org/0000-0002-6709-9186>),
Peter N. Brown [ctb] (files ddaspk.f, dvode.f, zvode.f),
George D. Byrne [ctb] (files dvode.f, zvode.f),
Ernst Hairer [ctb] (files radau5.f, radau5a),
Alan C. Hindmarsh [ctb] (files ddaspk.f, dlsode.f, dvode.f, zvode.f,
opdkmain.f, opdka1.f),
Cleve Moler [ctb] (file dlinpck.f),
Linda R. Petzold [ctb] (files ddaspk.f, dlsoda.f),
Youcef Saad [ctb] (file dsparsk.f),
Clement W. Ulrich [ctb] (file ddaspk.f)
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between deSolve versions 1.27.1 dated 2020-01-02 and 1.28 dated 2020-03-08
deSolve-1.27.1/deSolve/inst/doc/source/sourcefiles.txt |only deSolve-1.28/deSolve/DESCRIPTION | 6 deSolve-1.28/deSolve/MD5 | 33 deSolve-1.28/deSolve/NEWS | 11 deSolve-1.28/deSolve/build/vignette.rds |binary deSolve-1.28/deSolve/data/ccl4data.rda |binary deSolve-1.28/deSolve/inst/doc/compiledCode.R | 706 ++--- deSolve-1.28/deSolve/inst/doc/compiledCode.pdf |binary deSolve-1.28/deSolve/inst/doc/deSolve.R | 2074 ++++++++--------- deSolve-1.28/deSolve/inst/doc/deSolve.pdf |binary deSolve-1.28/deSolve/man/DLLfunc.Rd | 2 deSolve-1.28/deSolve/src/call_rkAuto.c | 4 deSolve-1.28/deSolve/src/call_rkFixed.c | 2 deSolve-1.28/deSolve/src/call_rkImplicit.c | 2 deSolve-1.28/deSolve/src/ddaspk.f | 1 deSolve-1.28/deSolve/src/errmsg.f | 10 deSolve-1.28/deSolve/src/opkda1.f | 2 deSolve-1.28/deSolve/src/opkdmain.f | 4 18 files changed, 1436 insertions(+), 1421 deletions(-)
Title: Interactive Functions to be Used as Shortcuts in 'RStudio'
Description: 'RStudio' as of recently offers the option to define addins and assign shortcuts to them. This package contains addins for a few most frequently used functions in a data scientist's (at least mine) daily work (like str(), example(), plot(), head(), view(), Desc()). Most of these functions will use the current selection in the editor window and send the specific command to the console while instantly executing it. Assigning shortcuts to these addins will save you quite a few keystrokes.
Author: Andri Signorell
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescToolsAddIns versions 1.6 dated 2020-01-10 and 1.7 dated 2020-03-08
DESCRIPTION | 8 +- MD5 | 16 ++--- NAMESPACE | 6 +- NEWS | 20 +++++++ R/AddIns.R | 134 +++++++++++++++++++++++++++++++++++++++++------- R/Dialogs.R | 45 ++++++++++------ inst/rstudio/addins.dcf | 26 +++++++-- man/DescToolsAddIns.Rd | 22 ++++--- man/SelectVarDlg.Rd | 22 +++++++ 9 files changed, 233 insertions(+), 66 deletions(-)
More information about DescToolsAddIns at CRAN
Permanent link
Title: Arbitrary Dimensional Clifford Algebras
Description: A suite of routines for Clifford algebras, using the
'Map' class of the Standard Template Library. Canonical
reference: Hestenes (1987, ISBN 90-277-1673-0, "Clifford algebra
to geometric calculus"). Special cases including Lorentz transforms,
quaternion multiplication, and Grassman algebra, are discussed.
Conformal geometric algebra theory is implemented.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between clifford versions 1.0-1 dated 2020-01-30 and 1.0-2 dated 2020-03-08
DESCRIPTION | 6 +- MD5 | 63 +++++++++++------------ NAMESPACE | 6 ++ R/RcppExports.R | 12 ++++ R/clifford.R | 14 +++-- R/clifford_ops.R | 71 +++++++++++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/clifford.R | 42 ++++++++++++++- inst/doc/clifford.Rnw | 77 +++++++++++++++++++++++++--- inst/doc/clifford.pdf |binary inst/linear_algebra.Rmd | 63 ++++++++++++++++++++--- inst/lorentz_clifford.Rmd | 20 +++---- inst/quaternion_clifford.Rmd |only man/Conj.Rd | 1 man/Ops.clifford.Rd | 92 ++++++++++++++++++++++++--------- man/antivector.Rd | 37 ++++++++++++- man/getcoeffs.Rd | 3 - man/grade.Rd | 4 + man/lowlevel.Rd | 3 + man/numeric_to_clifford.Rd | 9 ++- man/quaternion.Rd | 2 man/rcliff.Rd | 6 +- man/rev.Rd | 8 +- man/signature.Rd | 3 - man/zap.Rd | 11 +++- src/RcppExports.cpp | 51 ++++++++++++++++++ src/clifford.cpp | 29 ++++++++++ src/clifford.h | 117 ++++++++++++++++--------------------------- tests/testthat/test_aaa.R | 24 ++++++++ tests/testthat/test_aab.R | 19 ++++++ vignettes/clifford.Rnw | 77 +++++++++++++++++++++++++--- vignettes/clifford.bib | 23 +++++++- 33 files changed, 692 insertions(+), 201 deletions(-)
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was package was originally inspired by the book
"Visualizing Categorical Data" by Michael Friendly and is
now the main support package for a new book,
"Discrete Data Analysis with R" by Michael Friendly and
David Meyer (2015).
Author: David Meyer [aut, cre],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Kurt Hornik [aut],
Florian Gerber [ctb],
Michael Friendly [ctb]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between vcd versions 1.4-5 dated 2020-01-13 and 1.4-6 dated 2020-03-08
DESCRIPTION | 6 ++--- MD5 | 44 ++++++++++++++++++++--------------------- R/doubledeckerplot.R | 15 +++++++++++++ R/strucplot.R | 2 - build/vignette.rds |binary data/Butterfly.rda |binary data/Employment.rda |binary data/Federalist.rda |binary data/HorseKicks.rda |binary data/Hospital.rda |binary data/Lifeboats.rda |binary data/MSPatients.rda |binary data/PreSex.rda |binary data/RepVict.rda |binary data/Rochdale.rda |binary data/Saxony.rda |binary data/Suicide.rda |binary data/UKSoccer.rda |binary data/WeldonDice.rda |binary data/WomenQueue.rda |binary inst/NEWS.Rd | 13 +++++++++++- inst/doc/residual-shadings.pdf |binary inst/doc/strucplot.pdf |binary 23 files changed, 53 insertions(+), 27 deletions(-)
Title: 'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest
Neighbors
Description: 'Annoy' is a small C++ library for Approximate Nearest Neighbors
written for efficient memory usage as well an ability to load from / save to
disk. This package provides an R interface by relying on the 'Rcpp' package,
exposing the same interface as the original Python wrapper to 'Annoy'. See
<https://github.com/spotify/annoy> for more on 'Annoy'. 'Annoy' is released
under Version 2.0 of the Apache License. Also included is a small Windows
port of 'mmap' which is released under the MIT license.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppAnnoy versions 0.0.15 dated 2020-02-27 and 0.0.16 dated 2020-03-08
ChangeLog | 27 ++++++++++++++++++++++++ DESCRIPTION | 8 +++---- MD5 | 20 +++++++++++------- R/RcppExports.R |only build/vignette.rds |binary inst/NEWS.Rd | 15 +++++++++++++ inst/doc/UsingAnnoyInCcppWrapper.pdf |binary inst/include/annoylib.h | 38 +++++++++++------------------------ man/getArchictectureStatus.Rd |only src/RcppExports.cpp |only src/annoy.cpp | 6 +---- src/arch.cpp |only src/init.c | 2 + 13 files changed, 75 insertions(+), 41 deletions(-)
Title: The CDK Libraries Packaged for R
Description: An R interface to the Chemistry Development Kit, a Java library
for chemoinformatics. Given the size of the library itself, this package is
not expected to change very frequently. To make use of the CDK within R, it is
suggested that you use the 'rcdk' package. Note that it is possible to directly
interact with the CDK using 'rJava'. However 'rcdk' exposes functionality in a more
idiomatic way. The CDK library itself is released as LGPL and the sources can be
obtained from <https://github.com/cdk/cdk>.
Author: Rajarshi Guha [aut],
Zachary Charlop-Powers [cre],
CDK Project [ctb, cph] (CDK Java library contained in multiple jar
files)
Maintainer: Zachary Charlop-Powers <zach.charlop.powers@gmail.com>
Diff between rcdklibs versions 2.0 dated 2017-06-11 and 2.3 dated 2020-03-08
rcdklibs-2.0/rcdklibs/inst/cont/cdk-2.0.jar |only rcdklibs-2.3/rcdklibs/DESCRIPTION | 10 +++++----- rcdklibs-2.3/rcdklibs/MD5 | 8 ++++---- rcdklibs-2.3/rcdklibs/NEWS | 1 + rcdklibs-2.3/rcdklibs/inst/cont/cdk-2.3.jar |only rcdklibs-2.3/rcdklibs/java/README | 4 ++-- 6 files changed, 12 insertions(+), 11 deletions(-)
Title: High Performance Implementation of the Naive Bayes Algorithm
Description: In this implementation of the Naive Bayes classifier following class conditional distributions are available: Bernoulli, Categorical, Gaussian, Poisson and non-parametric representation of the class conditional density estimated via Kernel Density Estimation. Implemented classifiers handle missing data and can take advantage of sparse data.
Author: Michal Majka
Maintainer: Michal Majka <michalmajka@hotmail.com>
Diff between naivebayes versions 0.9.6 dated 2019-06-03 and 0.9.7 dated 2020-03-08
DESCRIPTION | 11 + MD5 | 55 ++++----- R/bernoulli_naive_bayes.R | 161 +++++++++++++++------------- R/gaussian_naive_bayes.R | 150 ++++++++++++++------------ R/misc.R | 7 + R/multinomial_naive_bayes.R | 107 +++++++++--------- R/naive_bayes.default.R | 1 R/nonparametric_naive_bayes.R | 71 ++++-------- R/plot.naive_bayes.R | 10 - R/poisson_naive_bayes.R | 166 ++++++++++++++--------------- R/predict.naive_bayes.R | 20 +-- R/tables.R | 23 +--- inst/NEWS.Rd | 10 + inst/doc/intro_naivebayes.R | 2 inst/doc/intro_naivebayes.Rnw | 32 ++--- inst/doc/intro_naivebayes.pdf |binary man/bernoulli_naive_bayes.Rd | 59 +++++++--- man/figures/kde-1.png |binary man/figures/kde-2.png |binary man/figures/kde_adjust-1.png |binary man/figures/kde_bw-1.png |binary man/figures/kde_kernel-1.png |binary man/gaussian_naive_bayes.Rd | 62 ++++++++-- man/multinomial_naive_bayes.Rd | 36 ++++-- man/nonparametric_naive_bayes.Rd | 9 - man/poisson_naive_bayes.Rd | 69 ++++++++---- man/tables.Rd | 2 vignettes/intro_naivebayes-concordance.tex |only vignettes/intro_naivebayes.Rnw | 32 ++--- 29 files changed, 622 insertions(+), 473 deletions(-)
Title: Automatically Position Non-Overlapping Text Labels with
'ggplot2'
Description: Provides text and label geoms for 'ggplot2' that help to avoid
overlapping text labels. Labels repel away from each other and away from the
data points.
Author: Kamil Slowikowski [aut, cre] (<https://orcid.org/0000-0002-2843-6370>),
Alicia Schep [ctb] (<https://orcid.org/0000-0002-3915-0618>),
Sean Hughes [ctb],
Saulius Lukauskas [ctb],
Jean-Olivier Irisson [ctb] (<https://orcid.org/0000-0003-4920-3880>),
Zhian N Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>),
Thompson Ryan [ctb] (<https://orcid.org/0000-0002-0450-8181>),
Dervieux Christophe [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Yutani Hiroaki [ctb],
Pierre Gramme [ctb]
Maintainer: Kamil Slowikowski <kslowikowski@gmail.com>
Diff between ggrepel versions 0.8.1 dated 2019-05-07 and 0.8.2 dated 2020-03-08
DESCRIPTION | 6 +- MD5 | 16 ++--- NEWS.md | 23 +++++++- R/utilities.R | 8 -- README.md | 5 - build/vignette.rds |binary inst/doc/ggrepel.R | 28 ++++----- inst/doc/ggrepel.html | 118 ++++++++++++++++++++++++++---------------- tests/testthat/test-to_unit.R | 4 - 9 files changed, 126 insertions(+), 82 deletions(-)
Title: Tools for Semantic Vector Spaces
Description: Various tools for semantic vector spaces, such as
correspondence analysis (simple, multiple and discriminant), latent
semantic analysis, probabilistic latent semantic analysis, non-negative
matrix factorization, latent class analysis and EM clustering. Furthermore,
there are specialized distance measures, plotting functions and some helper
functions.
Author: Koen Plevoets [aut, cre]
Maintainer: Koen Plevoets <koen.plevoets@ugent.be>
Diff between svs versions 1.1.0 dated 2016-01-13 and 2.0.0 dated 2020-03-08
DESCRIPTION | 16 ++- MD5 | 76 ++++++++--------- NAMESPACE | 7 + R/svs.r | 201 ++++++++++++++++++++++++++++----------------- inst/extdata/Ctxt_Dut.txt | 2 inst/extdata/Ctxt_Eng.txt | 2 inst/extdata/Ctxt_Fra.txt | 2 man/Ctxt_Dut.txt.Rd | 36 ++++---- man/Ctxt_Eng.txt.Rd | 38 ++++---- man/Ctxt_Fra.txt.Rd | 38 ++++---- man/InvT_Eng.txt.Rd | 45 +++++----- man/InvT_Fra.txt.Rd | 45 +++++----- man/MI.Rd | 63 +++++++------- man/SndT_Eng.txt.Rd | 45 +++++----- man/SndT_Fra.txt.Rd | 45 +++++----- man/cd_plot.Rd | 151 +++++++++++++++++++-------------- man/centers_ca.Rd | 63 +++++++------- man/complete_pvpick.Rd | 38 ++++---- man/dist_chisquare.Rd | 61 ++++++------- man/dist_cosine.Rd | 67 +++++++-------- man/dist_wrt.Rd | 55 ++++++------ man/dist_wrt_centers.Rd | 69 +++++++-------- man/fast_E_M.Rd | 85 +++++++++---------- man/fast_dca.Rd | 79 ++++++++--------- man/fast_lca.Rd | 83 +++++++++--------- man/fast_lsa.Rd | 85 +++++++++---------- man/fast_mca.Rd | 63 +++++++------- man/fast_nmf.Rd | 97 ++++++++++----------- man/fast_psa.Rd | 97 ++++++++++----------- man/fast_sca.Rd | 59 ++++++------- man/freq_ca.Rd | 51 +++++------ man/outerec.Rd | 32 +++---- man/pc_plot.Rd | 143 +++++++++++++++++--------------- man/pmi.Rd | 67 +++++++-------- man/svs-package.Rd | 191 +++++++++++++++++++++--------------------- man/tab2dat.Rd | 32 +++---- man/tab2ind.Rd | 42 ++++----- man/vec2ind.Rd | 45 +++++----- man/weighting_functions.Rd | 165 ++++++++++++++++++------------------ 39 files changed, 1349 insertions(+), 1232 deletions(-)
Title: Rational Approximations of Fractional Stochastic Partial
Differential Equations
Description: Functions that compute rational approximations of fractional elliptic stochastic partial differential equations. The package also contains functions for common statistical usage of these approximations. The main reference for the methods is Bolin and Kirchner (2019) <arXiv:1711.04333>, which can be generated by the citation function in R.
Author: David Bolin [cre, aut]
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between rSPDE versions 0.4.6 dated 2019-08-20 and 0.4.8 dated 2020-03-08
DESCRIPTION | 12 MD5 | 19 - NAMESPACE | 1 R/util.R | 39 ++ inst/doc/rspde.R | 45 +- inst/doc/rspde.Rmd | 1 inst/doc/rspde.html | 852 +++++++++++++++++++++------------------------- man/predict.rSPDEobj.Rd | 3 man/rSPDE.Rd | 1 man/require.nowarnings.Rd |only vignettes/rspde.Rmd | 1 11 files changed, 484 insertions(+), 490 deletions(-)
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Wouter Thielen [ctb],
Paul Teetor [ctb],
Steve Bronder [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4-15 dated 2019-06-17 and 0.4-16 dated 2020-03-08
DESCRIPTION | 6 - MD5 | 46 ++++++------ NAMESPACE | 1 NEWS.md | 45 ++++++++++++ R/addTA.R | 2 R/addVo.R | 2 R/add_Last.R | 2 R/chartSeries.R | 16 ++-- R/chartSeries.chob.R | 2 R/chart_Series.R | 2 R/dropTA.R | 2 R/getDividends.R | 6 - R/getOptionChain.R | 11 ++- R/getQuote.R | 173 +++++++++++++++++++++++++++++------------------- R/getSplits.R | 9 -- R/getSymbols.R | 72 ++++++------------- R/modelReturn.R | 2 R/periodReturn.R | 6 - R/reChart.R | 4 - R/tools.R | 5 + R/tradeModel.R | 2 build/partial.rdb |binary tests/test_getSymbols.R | 2 tests/tests.R | 29 +++++++- 24 files changed, 269 insertions(+), 178 deletions(-)
Title: Methods and Measures for Brain, Cognitive, and Psychometric
Network Analysis
Description: Implements network analysis and graph theory measures used in neuroscience, cognitive science, and psychology. Methods include various filtering methods and approaches such as threshold, dependency (Kenett, Tumminello, Madi, Gur-Gershgoren, Mantegna, & Ben-Jacob, 2010 <doi:10.1371/journal.pone.0015032>), Information Filtering Networks (Barfuss, Massara, Di Matteo, & Aste, 2016 <doi:10.1103/PhysRevE.94.062306>), and Efficiency-Cost Optimization (Fallani, Latora, & Chavez, 2017 <doi:10.1371/journal.pcbi.1005305>). Brain methods include the recently developed Connectome Predictive Modeling (see references in package). Also implements several network measures including local network characteristics (e.g., centrality), community-level network characteristics (e.g., community centrality), global network characteristics (e.g., clustering coefficient), and various other measures associated with the reliability and reproducibility of network analysis.
Author: Alexander Christensen [aut, cre]
(<https://orcid.org/0000-0002-9798-7037>),
Guido Previde Massara [ctb] (<https://orcid.org/0000-0003-0502-2789>)
Maintainer: Alexander Christensen <alexpaulchristensen@gmail.com>
Diff between NetworkToolbox versions 1.3.3 dated 2020-01-10 and 1.4.0 dated 2020-03-08
DESCRIPTION | 8 +- MD5 | 80 ++++++++++++++------------ NAMESPACE | 4 + NEWS | 15 ++++- R/betweenness.R | 2 R/closeness.R | 2 R/clustcoeff.R | 2 R/comcat.R | 144 ++++++++++++++++++++++++++++-------------------- R/convertConnBrainMat.R | 108 +++++++++++++++++++++++------------- R/cpm.R | 143 +++++++++++++++++++++++++++++++++++------------ R/dCor.R |only R/dCor.parallel.R |only R/degree.R | 2 R/distance.R | 2 R/diversity.R | 2 R/eigenvector.R | 2 R/gateway.R | 2 R/lattnet.R | 2 R/louvain.R | 2 R/participation.R | 7 +- R/pathlengths.R | 2 R/randnet.R | 2 R/stable.R | 99 +++++++++++++++++++-------------- R/strength.R | 2 R/transitivity.R | 2 man/betweenness.Rd | 2 man/closeness.Rd | 2 man/clustcoeff.Rd | 2 man/cpm.Rd | 14 +++- man/dCor.Rd |only man/dCor.parallel.Rd |only man/degree.Rd | 2 man/distance.Rd | 2 man/diversity.Rd | 2 man/eigenvector.Rd | 2 man/gateway.Rd | 2 man/lattnet.Rd | 2 man/louvain.Rd | 2 man/participation.Rd | 7 +- man/pathlengths.Rd | 2 man/randnet.Rd | 2 man/strength.Rd | 2 man/transitivity.Rd | 2 43 files changed, 432 insertions(+), 253 deletions(-)
More information about NetworkToolbox at CRAN
Permanent link
Title: Argentina's Permanent Household Survey Data and Manipulation
Utilities
Description: Tools to download and manipulate the Permanent Household Survey from Argentina
(EPH is the Spanish acronym for Permanent Household Survey).
e.g: get_microdata() for downloading the datasets, get_poverty_lines() for downloading the official poverty baskets,
calculate_poverty() for the calculation of stating if a household is in poverty or not, following the official methodology.
organize_panels() is used to concatenate observations from different periods, and organize_labels()
adds the official labels to the data. The implemented methods are based on INDEC (2016) <http://www.estadistica.ec.gba.gov.ar/dpe/images/SOCIEDAD/EPH_metodologia_22_pobreza.pdf>.
As this package works with the argentinian Permanent Household Survey and its main audience is from this country,
the documentation was written in Spanish.
Author: Diego Kozlowski [aut, cre] (<https://orcid.org/0000-0002-5396-3471>),
Pablo Tiscornia [aut],
Guido Weksler [aut],
Natsumi Shokida [aut],
German Rosati [aut] (<https://orcid.org/0000-0002-9775-0435>)
Maintainer: Diego Kozlowski <diegokoz92@gmail.com>
Diff between eph versions 0.2.0 dated 2019-11-26 and 0.3.0 dated 2020-03-08
DESCRIPTION | 13 - MD5 | 44 ++- NAMESPACE | 1 NEWS.md | 7 R/calculate_tabulates.R | 4 R/centroides_aglomerados.R |only R/eph.R | 3 R/get_microdata_internal.R | 8 R/is_in_github.R |only R/map_agglomerates.R |only R/organize_ocupations.R | 8 README.md | 4 build/vignette.rds |binary data/centroides_aglomerados.rda |only inst/doc/eph.R | 48 +-- inst/doc/eph.Rmd | 2 inst/doc/eph.html | 369 ++++++++++++++---------------- man/calculate_tabulates.Rd | 16 + man/centroides_aglomerados.Rd |only man/eph.Rd | 1 man/get_microdata.Rd | 9 man/get_microdata_internal.Rd | 9 man/is_in_github.Rd |only man/map_agglomerates.Rd |only tests/testthat/test-calculate_tabulates.R | 1 tests/testthat/test-map_agglomerates.R |only vignettes/eph.Rmd | 2 27 files changed, 289 insertions(+), 260 deletions(-)
Title: Tidy Interface to 'data.table'
Description: Tidy interface to 'data.table'. 'rlang' compatible, which allows the user to build custom functions much like they would in the tidyverse.
Author: Mark Fairbanks [aut, cre],
Tyson Barrett [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.3.1 dated 2020-02-19 and 0.3.2 dated 2020-03-08
tidytable-0.3.1/tidytable/R/as_dt.R |only tidytable-0.3.1/tidytable/R/dplyr_verbs.R |only tidytable-0.3.1/tidytable/R/selectors.R |only tidytable-0.3.1/tidytable/R/shallow.R |only tidytable-0.3.1/tidytable/R/stringr.R |only tidytable-0.3.1/tidytable/man/as_dt.Rd |only tidytable-0.3.2/tidytable/DESCRIPTION | 16 tidytable-0.3.2/tidytable/MD5 | 145 ++++---- tidytable-0.3.2/tidytable/NAMESPACE | 87 ++++- tidytable-0.3.2/tidytable/NEWS.md | 20 + tidytable-0.3.2/tidytable/R/arrange.R |only tidytable-0.3.2/tidytable/R/as_tidytable.R |only tidytable-0.3.2/tidytable/R/bind.R | 45 +- tidytable-0.3.2/tidytable/R/count.R | 21 - tidytable-0.3.2/tidytable/R/distinct.R | 13 tidytable-0.3.2/tidytable/R/drop_na.R | 13 tidytable-0.3.2/tidytable/R/dt.R | 52 --- tidytable-0.3.2/tidytable/R/fill.R | 15 tidytable-0.3.2/tidytable/R/filter.R |only tidytable-0.3.2/tidytable/R/get_dummies.R |only tidytable-0.3.2/tidytable/R/group_split.R | 14 tidytable-0.3.2/tidytable/R/inv_gc.R | 9 tidytable-0.3.2/tidytable/R/is_tidytable.R |only tidytable-0.3.2/tidytable/R/join.R | 66 ++- tidytable-0.3.2/tidytable/R/mutate.R |only tidytable-0.3.2/tidytable/R/mutate_variants.R | 30 + tidytable-0.3.2/tidytable/R/nest.R | 13 tidytable-0.3.2/tidytable/R/pivot_longer.R | 47 +- tidytable-0.3.2/tidytable/R/pivot_wider.R | 62 ++- tidytable-0.3.2/tidytable/R/print.R |only tidytable-0.3.2/tidytable/R/pull.R | 14 tidytable-0.3.2/tidytable/R/purrr.R | 22 - tidytable-0.3.2/tidytable/R/relocate.R | 47 +- tidytable-0.3.2/tidytable/R/rename.R | 13 tidytable-0.3.2/tidytable/R/rename_variants.R | 37 +- tidytable-0.3.2/tidytable/R/select.R |only tidytable-0.3.2/tidytable/R/select_helpers.R | 6 tidytable-0.3.2/tidytable/R/separate.R |only tidytable-0.3.2/tidytable/R/slice.R | 87 +++-- tidytable-0.3.2/tidytable/R/summarize.R |only tidytable-0.3.2/tidytable/R/tidytable.R |only tidytable-0.3.2/tidytable/R/tidytable_package.R | 8 tidytable-0.3.2/tidytable/R/top_n.R | 26 + tidytable-0.3.2/tidytable/R/unnest.R | 20 - tidytable-0.3.2/tidytable/R/utils-general.R |only tidytable-0.3.2/tidytable/R/utils-selectors.R |only tidytable-0.3.2/tidytable/R/utils-stringr.R |only tidytable-0.3.2/tidytable/README.md | 173 ++++------ tidytable-0.3.2/tidytable/man/as_tidytable.Rd |only tidytable-0.3.2/tidytable/man/dt.Rd | 52 --- tidytable-0.3.2/tidytable/man/dt_arrange.Rd |only tidytable-0.3.2/tidytable/man/dt_bind_rows.Rd | 8 tidytable-0.3.2/tidytable/man/dt_filter.Rd |only tidytable-0.3.2/tidytable/man/dt_get_dummies.Rd |only tidytable-0.3.2/tidytable/man/dt_map.Rd | 8 tidytable-0.3.2/tidytable/man/dt_mutate.Rd | 49 -- tidytable-0.3.2/tidytable/man/dt_pivot_longer.Rd | 4 tidytable-0.3.2/tidytable/man/dt_relocate.Rd | 5 tidytable-0.3.2/tidytable/man/dt_select.Rd |only tidytable-0.3.2/tidytable/man/dt_separate.Rd |only tidytable-0.3.2/tidytable/man/dt_slice.Rd | 3 tidytable-0.3.2/tidytable/man/dt_summarize.Rd |only tidytable-0.3.2/tidytable/man/dt_top_n.Rd | 3 tidytable-0.3.2/tidytable/man/dt_unnest_legacy.Rd | 5 tidytable-0.3.2/tidytable/man/figures/logo.png |binary tidytable-0.3.2/tidytable/man/inv_gc.Rd | 4 tidytable-0.3.2/tidytable/man/is_tidytable.Rd |only tidytable-0.3.2/tidytable/man/tidytable.Rd |only tidytable-0.3.2/tidytable/tests/testthat/test-arrange.R | 8 tidytable-0.3.2/tidytable/tests/testthat/test-bind.R | 34 + tidytable-0.3.2/tidytable/tests/testthat/test-count.R | 9 tidytable-0.3.2/tidytable/tests/testthat/test-distinct.R | 11 tidytable-0.3.2/tidytable/tests/testthat/test-drop_na.R | 12 tidytable-0.3.2/tidytable/tests/testthat/test-dt.R |only tidytable-0.3.2/tidytable/tests/testthat/test-fill.R | 45 +- tidytable-0.3.2/tidytable/tests/testthat/test-filter.R | 11 tidytable-0.3.2/tidytable/tests/testthat/test-get_dummies.R |only tidytable-0.3.2/tidytable/tests/testthat/test-join.R |only tidytable-0.3.2/tidytable/tests/testthat/test-mutate.R | 23 + tidytable-0.3.2/tidytable/tests/testthat/test-mutate_variants.R | 18 + tidytable-0.3.2/tidytable/tests/testthat/test-pivot_longer.R | 16 tidytable-0.3.2/tidytable/tests/testthat/test-pivot_wider.R | 7 tidytable-0.3.2/tidytable/tests/testthat/test-pull.R | 8 tidytable-0.3.2/tidytable/tests/testthat/test-relocate.R |only tidytable-0.3.2/tidytable/tests/testthat/test-rename.R | 32 + tidytable-0.3.2/tidytable/tests/testthat/test-select.R | 8 tidytable-0.3.2/tidytable/tests/testthat/test-separate.R |only tidytable-0.3.2/tidytable/tests/testthat/test-slice.R | 50 ++ tidytable-0.3.2/tidytable/tests/testthat/test-summarize.R | 30 + tidytable-0.3.2/tidytable/tests/testthat/test-top_n.R | 28 + tidytable-0.3.2/tidytable/tests/testthat/test-unnest.R |only 91 files changed, 1087 insertions(+), 525 deletions(-)
Title: Tools to Handle Taxonomic Lists
Description: Some tools to work with taxonomic name lists.
Author: Vijay Barve [aut, cre] (<https://orcid.org/0000-0002-4852-2567>)
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between taxotools versions 0.0.35 dated 2019-07-25 and 0.0.43 dated 2020-03-08
taxotools-0.0.35/taxotools/R/BuildCSList.R |only taxotools-0.0.35/taxotools/R/CheckScientificName.R |only taxotools-0.0.35/taxotools/R/ExpandSyn.R |only taxotools-0.0.35/taxotools/R/GetITISSyn.R |only taxotools-0.0.35/taxotools/R/GetWikiSyn.R |only taxotools-0.0.35/taxotools/R/GuessTaxoLevel.R |only taxotools-0.0.35/taxotools/R/ListITISSyn.R |only taxotools-0.0.35/taxotools/R/MakeCanonical.R |only taxotools-0.0.35/taxotools/R/MatchLists.R |only taxotools-0.0.35/taxotools/R/make_canonical.R |only taxotools-0.0.35/taxotools/man/BuildCSList.Rd |only taxotools-0.0.35/taxotools/man/CheckScientificName.Rd |only taxotools-0.0.35/taxotools/man/ExpandSyn.Rd |only taxotools-0.0.35/taxotools/man/GetITISSyn.Rd |only taxotools-0.0.35/taxotools/man/GetWikiSyn.Rd |only taxotools-0.0.35/taxotools/man/GuessTaxoLevel.Rd |only taxotools-0.0.35/taxotools/man/ListITISSyn.Rd |only taxotools-0.0.35/taxotools/man/MakeCanonical.Rd |only taxotools-0.0.35/taxotools/man/MatchLists.Rd |only taxotools-0.0.35/taxotools/man/make_canonical.Rd |only taxotools-0.0.43/taxotools/DESCRIPTION | 10 - taxotools-0.0.43/taxotools/MD5 | 66 +++------ taxotools-0.0.43/taxotools/NAMESPACE | 12 - taxotools-0.0.43/taxotools/NEWS | 10 + taxotools-0.0.43/taxotools/R/cast_cs_field.R | 6 taxotools-0.0.43/taxotools/R/list_higher_taxo.R | 9 + taxotools-0.0.43/taxotools/R/list_wiki_syn.R | 1 taxotools-0.0.43/taxotools/R/match_lists.R | 13 + taxotools-0.0.43/taxotools/R/melt_canonical.R | 50 ++----- taxotools-0.0.43/taxotools/R/taxotools.R | 17 -- taxotools-0.0.43/taxotools/R/zzz.R | 3 taxotools-0.0.43/taxotools/man/cast_canonical.Rd | 79 +++++------ taxotools-0.0.43/taxotools/man/cast_cs_field.Rd | 83 ++++++----- taxotools-0.0.43/taxotools/man/check_scientific.Rd | 65 ++++----- taxotools-0.0.43/taxotools/man/expand_name.Rd | 71 +++++----- taxotools-0.0.43/taxotools/man/get_itis_syn.Rd | 56 ++++---- taxotools-0.0.43/taxotools/man/guess_taxo_level.Rd | 59 ++++---- taxotools-0.0.43/taxotools/man/list_higher_taxo.Rd | 117 +++++++++------- taxotools-0.0.43/taxotools/man/list_itis_syn.Rd | 56 ++++---- taxotools-0.0.43/taxotools/man/list_wiki_syn.Rd | 54 +++---- taxotools-0.0.43/taxotools/man/match_lists.Rd | 75 ++++++---- taxotools-0.0.43/taxotools/man/melt_canonical.Rd | 87 ++++++------ taxotools-0.0.43/taxotools/man/melt_cs_field.Rd | 73 +++++----- taxotools-0.0.43/taxotools/man/taxotools.Rd | 125 +++++++----------- 44 files changed, 594 insertions(+), 603 deletions(-)
Title: R Interface to the CSDP Semidefinite Programming Library
Description: R interface to the CSDP semidefinite programming library. Installs version 6.1.1 of CSDP from the COIN-OR website if required. An existing installation of CSDP may be used by passing the proper configure arguments to the installation command. See the INSTALL file for further details.
Author: Hector Corrada Bravo [aut, cre],
Brian Borchers [aut],
Don van den Bergh [ctb]
Maintainer: Hector Corrada Bravo <hcorrada@gmail.com>
Diff between Rcsdp versions 0.1.56.1 dated 2020-03-06 and 0.1.57 dated 2020-03-08
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ configure | 1 - src/Csdp/lib/initparams.c | 32 ++++++++++++++++---------------- 5 files changed, 27 insertions(+), 24 deletions(-)
Title: A Toolbox for Working with R Arrays in a Functional Programming
Style
Description: A toolbox for R arrays. Flexibly split, bind, reshape, modify,
subset and name arrays.
Author: Tomasz Kalinowski [aut, cre]
Maintainer: Tomasz Kalinowski <kalinowskit@gmail.com>
Diff between listarrays versions 0.3.0 dated 2020-01-08 and 0.3.1 dated 2020-03-08
DESCRIPTION | 6 - MD5 | 26 ++++---- NAMESPACE | 1 R/bind.R | 2 R/split.R | 2 R/utils.R | 37 ++++++++++- man/DIM.Rd | 28 ++++++++ tests/testthat.R | 8 +- tests/testthat/test-bind.R | 80 ++++++++++++++---------- tests/testthat/test-map.R | 23 +++---- tests/testthat/test-modify.R | 70 ++++++++++----------- tests/testthat/test-onehot.R | 44 ++++++------- tests/testthat/test-shuffle.R | 34 +++++----- tests/testthat/test-split.R | 135 +++++++++++++++++++++++------------------- 14 files changed, 289 insertions(+), 207 deletions(-)
Title: Additional Functions for 'GeoPAT' 2
Description: Supports analysis of spatial data processed with the 'GeoPAT' 2
software <http://sil.uc.edu/cms/index.php?id=geopat2>.
Available features include creation of a grid based on the 'GeoPAT' 2
grid header file and reading a 'GeoPAT' 2 text outputs.
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Space Informatics Lab [cph]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between rgeopat2 versions 0.2.6 dated 2018-09-16 and 0.3.9 dated 2020-03-08
DESCRIPTION | 8 +++---- MD5 | 20 ++++++++++-------- R/gpat_create_grid.R | 36 +++++++++++++++++++++++++++++---- R/gpat_polygonts.R |only R/gpat_read_txt.R | 20 +++++++++++++----- inst/rawdata/barent_ts_grd.txt |only man/gpat_create_grid.Rd | 2 - man/gpat_read_txt.Rd | 6 ++++- man/gpat_st_make_grid.Rd | 6 ++--- man/rgeopat2.Rd | 1 tests/testthat/test-gpat_create_grid.R | 4 +-- tests/testthat/test-gpat_read_txt.R | 19 ++++++++++++----- 12 files changed, 87 insertions(+), 35 deletions(-)
Title: Chunkwise Text-File Processing for 'dplyr'
Description: Data stored in text file can be processed chunkwise using 'dplyr' commands. These
are recorded and executed per data chunk, so large files can be processed with
limited memory using the 'LaF' package.
Author: Edwin de Jonge [aut, cre]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between chunked versions 0.4 dated 2017-07-01 and 0.4.1 dated 2020-03-08
DESCRIPTION | 13 ++--- MD5 | 28 +++++------ NAMESPACE | 20 ++++---- NEWS.md | 8 +++ R/chunkwise.R | 68 +++------------------------ R/read.R | 30 +++++++++--- R/verbs.R | 110 ++++++++++++++++++++++++++++++++------------ man/read_chunks.Rd | 37 +++++++++++--- man/read_chunkwise.Rd | 11 +++- man/write_chunkwise.Rd | 10 +++- man/write_csv.Rd | 33 ++++++++++--- tests/testthat/test-head.R | 1 tests/testthat/test-read.R | 27 +++++++++- tests/testthat/test-verbs.R | 2 tests/testthat/test-write.R | 8 +-- 15 files changed, 256 insertions(+), 150 deletions(-)
Title: Non Metric Space (Approximate) Library
Description: A Non-Metric Space Library ('NMSLIB' <https://github.com/nmslib/nmslib>) wrapper, which according to the authors "is an efficient cross-platform similarity search library and a toolkit for evaluation of similarity search methods. The goal of the 'NMSLIB' <https://github.com/searchivarius/nmslib> Library is to create an effective and comprehensive toolkit for searching in generic non-metric spaces. Being comprehensive is important, because no single method is likely to be sufficient in all cases. Also note that exact solutions are hardly efficient in high dimensions and/or non-metric spaces. Hence, the main focus is on approximate methods". The wrapper also includes Approximate Kernel k-Nearest-Neighbor functions based on the 'NMSLIB' <https://github.com/searchivarius/nmslib> 'Python' Library.
Author: Lampros Mouselimis [aut, cre],
B. Naidan [cph] (Author of the Non-Metric Space Library (NMSLIB)),
L. Boytsov [cph] (Author of the Non-Metric Space Library (NMSLIB)),
Yu. Malkov [cph] (Author of the Non-Metric Space Library (NMSLIB)),
B. Frederickson [cph] (Author of the Non-Metric Space Library (NMSLIB)),
D. Novak [cph] (Author of the Non-Metric Space Library (NMSLIB))
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between nmslibR versions 1.0.3 dated 2018-07-21 and 1.0.4 dated 2020-03-08
DESCRIPTION | 12 MD5 | 31 - NAMESPACE | 18 NEWS.md | 7 R/RcppModule.R |only R/nmslib.R | 92 ++- README.md | 13 inst/COPYRIGHTS | 4 inst/doc/the_nmslibR_package.R | 28 - inst/doc/the_nmslibR_package.Rmd | 8 inst/doc/the_nmslibR_package.html | 902 +++++++++++++++++++++++--------------- man/KernelKnnCV_nmslib.Rd | 28 - man/KernelKnn_nmslib.Rd | 26 - man/NMSlib.Rd | 159 +++++- man/TO_scipy_sparse.Rd | 32 - tests/testthat/test-nmslibR_pkg.R | 174 +++---- vignettes/the_nmslibR_package.Rmd | 8 17 files changed, 956 insertions(+), 586 deletions(-)
Title: Feature Selection
Description: Feature subset selection algorithms modularized in search algorithms and measure utilities. Full list and more information available at <https://dicits.ugr.es/software/FSinR/>.
Author: Alfonso Jiménez-Vílchez [aut, cre],
Francisco Aragón-Royón [aut],
Adan M. Rodriguez [aut],
Antonio Arauzo-Azofra [aut],
José Manuel Benítez [aut]
Maintainer: Alfonso Jiménez-Vílchez <i52jivia@uco.es>
Diff between FSinR versions 1.0.6 dated 2019-12-22 and 1.0.8 dated 2020-03-08
DESCRIPTION | 10 +- MD5 | 147 +++++++++++++++--------------- NAMESPACE | 1 R/Jd.R | 2 R/LCC.R | 2 R/RFSM.R | 4 R/chi2.R | 19 ++- R/consistency.R | 9 + R/determinationCoefficient.R | 3 R/entropy.R | 7 + R/exhaustiveSearch.R | 5 - R/fScore.R | 8 + R/gini.R | 6 - R/localSearch.R | 14 +- R/mdlc.R | 2 R/metaheuristic.R | 8 + R/others.R | 2 R/probabilistic.R | 3 R/relief.R | 2 R/selectIndividualFeatures.R | 28 +++-- R/sequentialSelection.R | 39 ++++--- R/wrapperGenerator.R | 3 build/partial.rdb |binary demo/wrapper.R | 2 inst/CITATION |only inst/doc/FSinR.R | 28 ++--- inst/doc/FSinR.html | 19 +-- inst/doc/methods.R | 10 +- inst/doc/methods.html | 17 +-- man/LCC.Rd | 9 + man/aco.Rd | 19 +++ man/ga.Rd | 13 ++ man/giniIndex.Rd | 2 man/hc.Rd | 13 ++ man/lvw.Rd | 10 +- man/normalization.Rd | 3 man/sa.Rd | 14 ++ man/ts.Rd | 38 +++++-- man/woa.Rd | 3 tests/testthat/testAco.R | 1 tests/testthat/testBinaryConsistency.R | 1 tests/testthat/testBreadthFirstSearch.R | 1 tests/testthat/testChiSquared.R | 4 tests/testthat/testCramer.R | 1 tests/testthat/testDeepFirstSearch.R | 1 tests/testthat/testDetermination.R | 1 tests/testthat/testFScore.R | 1 tests/testthat/testGa.R | 1 tests/testthat/testGainRatio.R | 1 tests/testthat/testGini.R | 1 tests/testthat/testHc.R | 1 tests/testthat/testIEConsistency.R | 1 tests/testthat/testIEPConsistency.R | 1 tests/testthat/testJd.R | 1 tests/testthat/testLCC.R | 1 tests/testthat/testLvw.R | 1 tests/testthat/testMDLC.R | 1 tests/testthat/testMutualInformation.R | 1 tests/testthat/testRFSM.R | 1 tests/testthat/testRelief.R | 1 tests/testthat/testRoughsetConsistency.R | 1 tests/testthat/testSBS.R | 1 tests/testthat/testSFBS.R | 1 tests/testthat/testSFFS.R | 1 tests/testthat/testSFS.R | 1 tests/testthat/testSa.R | 1 tests/testthat/testSelectDifference.R | 1 tests/testthat/testSelectKBest.R | 1 tests/testthat/testSelectPercentile.R | 1 tests/testthat/testSelectSlope.R | 1 tests/testthat/testSelectThreshold.R | 1 tests/testthat/testSelectThresholdRange.R | 1 tests/testthat/testSymmetricalUncertain.R | 1 tests/testthat/testTs.R | 1 tests/testthat/testWoa.R | 1 75 files changed, 358 insertions(+), 205 deletions(-)
Title: Non-Negative Garrote Estimation with Penalized Initial
Estimators
Description: Functions to compute the non-negative garrote estimator as
proposed by Breiman (1995) <https://www.jstor.org/stable/1269730>
with the penalized initial estimators extension as proposed by
Yuan and Lin (2007) <https://www.jstor.org/stable/4623260>.
Author: Anthony Christidis <anthony.christidis@stat.ubc.ca>,
Stefan Van Aelst <stefan.vanaelst@kuleuven.be>,
Ruben Zamar <ruben@stat.ubc.ca>
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between nnGarrote versions 1.0.0 dated 2020-02-28 and 1.0.1 dated 2020-03-08
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 2 ++ R/cv.nnGarrote.R | 34 +++++++++++++++++++--------------- R/nnGarrote.R | 4 ++-- README.md | 10 +++++----- 6 files changed, 37 insertions(+), 31 deletions(-)
Title: Ferguson-Klass Type Algorithm for Posterior Normalized Random
Measures
Description: Bayesian nonparametric density estimation modeling mixtures by a Ferguson-Klass type algorithm for posterior normalized random measures.
Author: Julyan Arbel [ctb],
Ernesto Barrios [aut],
Guillaume Kon Kam King [aut, cre],
Antonio Lijoi [aut],
Luis E. Nieto-Barajas [aut],
Igor Prünster [aut]
Maintainer: Guillaume Kon Kam King <guillaume.konkamking.work@gmail.com>
Diff between BNPdensity versions 2019.9.18 dated 2019-09-18 and 2020.3.4 dated 2020-03-08
BNPdensity-2019.9.18/BNPdensity/README.md |only BNPdensity-2019.9.18/BNPdensity/TODO |only BNPdensity-2019.9.18/BNPdensity/data/Enzyme1.out.rda |only BNPdensity-2019.9.18/BNPdensity/man/plot.NRMI1cens.Rd |only BNPdensity-2019.9.18/BNPdensity/man/plot.NRMI2cens.Rd |only BNPdensity-2019.9.18/BNPdensity/man/print.NRMI1cens.Rd |only BNPdensity-2019.9.18/BNPdensity/man/print.NRMI2cens.Rd |only BNPdensity-2019.9.18/BNPdensity/man/summary.NRMI1cens.Rd |only BNPdensity-2019.9.18/BNPdensity/man/summary.NRMI2cens.Rd |only BNPdensity-2020.3.4/BNPdensity/CHANGES | 19 BNPdensity-2020.3.4/BNPdensity/DESCRIPTION | 12 BNPdensity-2020.3.4/BNPdensity/MD5 | 196 ++++---- BNPdensity-2020.3.4/BNPdensity/NAMESPACE | 11 BNPdensity-2020.3.4/BNPdensity/R/BNPdensity-package.R | 18 BNPdensity-2020.3.4/BNPdensity/R/MixNRMI1.R | 115 ++--- BNPdensity-2020.3.4/BNPdensity/R/MixNRMI1cens.R | 106 ---- BNPdensity-2020.3.4/BNPdensity/R/MixNRMI2.R | 109 ++-- BNPdensity-2020.3.4/BNPdensity/R/MixNRMI2cens.R | 111 ----- BNPdensity-2020.3.4/BNPdensity/R/cens_data_check.R | 5 BNPdensity-2020.3.4/BNPdensity/R/convert_fit_to_MCMC_chain.R | 82 +-- BNPdensity-2020.3.4/BNPdensity/R/dist_name_k_converter.R |only BNPdensity-2020.3.4/BNPdensity/R/dk.R | 48 -- BNPdensity-2020.3.4/BNPdensity/R/dkcens2.R | 2 BNPdensity-2020.3.4/BNPdensity/R/expected_number_of_clusters_stable_process.R | 30 - BNPdensity-2020.3.4/BNPdensity/R/fcondXA2cens2.R | 2 BNPdensity-2020.3.4/BNPdensity/R/fcondYXAcens2.R | 2 BNPdensity-2020.3.4/BNPdensity/R/fcondYZXA.R | 12 BNPdensity-2020.3.4/BNPdensity/R/fcondYZXAcens2.R | 14 BNPdensity-2020.3.4/BNPdensity/R/gs4cens2.R | 2 BNPdensity-2020.3.4/BNPdensity/R/gs5cens2.R | 2 BNPdensity-2020.3.4/BNPdensity/R/gsYZstar.R | 2 BNPdensity-2020.3.4/BNPdensity/R/gsYZstarcens2.R | 4 BNPdensity-2020.3.4/BNPdensity/R/helper_functions.R | 17 BNPdensity-2020.3.4/BNPdensity/R/mixture_density_functions.R | 58 +- BNPdensity-2020.3.4/BNPdensity/R/multMixNRMI.R | 221 ++-------- BNPdensity-2020.3.4/BNPdensity/R/plotfit.R | 14 BNPdensity-2020.3.4/BNPdensity/R/posterior_clustering_analysis.R | 8 BNPdensity-2020.3.4/BNPdensity/R/ptnorm.R | 2 BNPdensity-2020.3.4/BNPdensity/R/qtnorm.R | 2 BNPdensity-2020.3.4/BNPdensity/R/rfystarcens2.R | 2 BNPdensity-2020.3.4/BNPdensity/R/rfyzstar.R | 2 BNPdensity-2020.3.4/BNPdensity/R/rfyzstarcens2.R | 2 BNPdensity-2020.3.4/BNPdensity/R/rk.R | 2 BNPdensity-2020.3.4/BNPdensity/R/traceplot.R | 4 BNPdensity-2020.3.4/BNPdensity/data/Enzyme2.out.rda |binary BNPdensity-2020.3.4/BNPdensity/data/Galaxy1.out.rda |binary BNPdensity-2020.3.4/BNPdensity/data/Galaxy2.out.rda |binary BNPdensity-2020.3.4/BNPdensity/data/datalist |only BNPdensity-2020.3.4/BNPdensity/man/Enzyme1.out.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/Enzyme2.out.Rd | 6 BNPdensity-2020.3.4/BNPdensity/man/Galaxy1.out.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/Galaxy2.out.Rd | 4 BNPdensity-2020.3.4/BNPdensity/man/MixNRMI1.Rd | 83 +-- BNPdensity-2020.3.4/BNPdensity/man/MixNRMI1cens.Rd | 53 +- BNPdensity-2020.3.4/BNPdensity/man/MixNRMI2.Rd | 73 +-- BNPdensity-2020.3.4/BNPdensity/man/MixNRMI2cens.Rd | 59 +- BNPdensity-2020.3.4/BNPdensity/man/acidity.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/add.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/as.mcmc.multNRMI.Rd | 9 BNPdensity-2020.3.4/BNPdensity/man/cens_data_check.Rd | 7 BNPdensity-2020.3.4/BNPdensity/man/comment_on_NRMI_type.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/compute_optimal_clustering.Rd | 6 BNPdensity-2020.3.4/BNPdensity/man/convert_to_mcmc.Rd | 4 BNPdensity-2020.3.4/BNPdensity/man/cpo.NRMI1.Rd |only BNPdensity-2020.3.4/BNPdensity/man/cpo.NRMI2.Rd |only BNPdensity-2020.3.4/BNPdensity/man/cpo.Rd | 14 BNPdensity-2020.3.4/BNPdensity/man/cpo.multNRMI.Rd |only BNPdensity-2020.3.4/BNPdensity/man/dist_name_k_index_converter.Rd |only BNPdensity-2020.3.4/BNPdensity/man/dk.Rd | 50 -- BNPdensity-2020.3.4/BNPdensity/man/dkcens2.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/dkcens2_1val.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/dtnorm.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/expected_number_of_components_Dirichlet.Rd | 10 BNPdensity-2020.3.4/BNPdensity/man/fcondYZXA.Rd | 6 BNPdensity-2020.3.4/BNPdensity/man/fcondYZXAcens2.Rd | 6 BNPdensity-2020.3.4/BNPdensity/man/give_kernel_name.Rd | 3 BNPdensity-2020.3.4/BNPdensity/man/gs4cens2.Rd | 14 BNPdensity-2020.3.4/BNPdensity/man/gs5cens2.Rd | 13 BNPdensity-2020.3.4/BNPdensity/man/gsHP.Rd | 2 BNPdensity-2020.3.4/BNPdensity/man/gsYZstar.Rd | 19 BNPdensity-2020.3.4/BNPdensity/man/gsYZstarcens2.Rd | 22 BNPdensity-2020.3.4/BNPdensity/man/multMixNRMI1.Rd | 52 +- BNPdensity-2020.3.4/BNPdensity/man/multMixNRMI1cens.Rd | 53 +- BNPdensity-2020.3.4/BNPdensity/man/multMixNRMI2.Rd | 56 +- BNPdensity-2020.3.4/BNPdensity/man/multMixNRMI2cens.Rd | 56 +- BNPdensity-2020.3.4/BNPdensity/man/p0.Rd | 8 BNPdensity-2020.3.4/BNPdensity/man/pk.Rd | 4 BNPdensity-2020.3.4/BNPdensity/man/plot.NRMI1.Rd | 8 BNPdensity-2020.3.4/BNPdensity/man/plot.NRMI2.Rd | 9 BNPdensity-2020.3.4/BNPdensity/man/plot.multNRMI.Rd | 6 BNPdensity-2020.3.4/BNPdensity/man/plot_clustering_and_CDF.Rd | 2 BNPdensity-2020.3.4/BNPdensity/man/plot_prior_number_of_components.Rd | 9 BNPdensity-2020.3.4/BNPdensity/man/plotfit_censored.Rd | 2 BNPdensity-2020.3.4/BNPdensity/man/print.NRMI1.Rd | 9 BNPdensity-2020.3.4/BNPdensity/man/print.NRMI2.Rd | 7 BNPdensity-2020.3.4/BNPdensity/man/print.multNRMI.Rd | 6 BNPdensity-2020.3.4/BNPdensity/man/process_dist_name.Rd |only BNPdensity-2020.3.4/BNPdensity/man/ptnorm.Rd | 11 BNPdensity-2020.3.4/BNPdensity/man/qtnorm.Rd | 11 BNPdensity-2020.3.4/BNPdensity/man/rfystarcens2.Rd | 14 BNPdensity-2020.3.4/BNPdensity/man/rfyzstar.Rd | 16 BNPdensity-2020.3.4/BNPdensity/man/rfyzstarcens2.Rd | 18 BNPdensity-2020.3.4/BNPdensity/man/rk.Rd | 10 BNPdensity-2020.3.4/BNPdensity/man/summary.NRMI1.Rd | 5 BNPdensity-2020.3.4/BNPdensity/man/summary.NRMI2.Rd | 8 BNPdensity-2020.3.4/BNPdensity/man/summary.multNRMI.Rd | 6 BNPdensity-2020.3.4/BNPdensity/man/traceplot.Rd | 4 107 files changed, 1037 insertions(+), 1078 deletions(-)
Title: 'Rapidjson' C++ Header Files
Description: Provides JSON parsing capability through the 'Rapidjson' 'C++' header-only library.
Author: David Cooley [aut, cre],
Milo Yip [ctb] (Author of c++ rapidjson library, provided through THL
A29 Limited, a Tencent company),
Alexander Chemeris [ctb] (Author of c++ msinttypes library)
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between rapidjsonr versions 1.1 dated 2018-09-22 and 1.2.0 dated 2020-03-08
DESCRIPTION | 12 +-- MD5 | 35 +++++---- inst/include/rapidjson/allocators.h | 2 inst/include/rapidjson/document.h | 97 ++++++++++++++++++++++++--- inst/include/rapidjson/filereadstream.h | 2 inst/include/rapidjson/fwd.h | 2 inst/include/rapidjson/internal/biginteger.h | 2 inst/include/rapidjson/internal/clzll.h |only inst/include/rapidjson/internal/diyfp.h | 18 ----- inst/include/rapidjson/internal/regex.h | 31 +++++--- inst/include/rapidjson/internal/stack.h | 5 - inst/include/rapidjson/istreamwrapper.h | 83 +++++++++++++---------- inst/include/rapidjson/pointer.h | 66 +++++++++++++++++- inst/include/rapidjson/prettywriter.h | 2 inst/include/rapidjson/rapidjson.h | 24 ++++++ inst/include/rapidjson/reader.h | 50 +++++++------ inst/include/rapidjson/schema.h | 12 +-- inst/include/rapidjson/writer.h | 14 +-- man/rapidjsonr-package.Rd | 2 19 files changed, 318 insertions(+), 141 deletions(-)
Title: Medical Devices Surveillance
Description: A set of core functions for handling medical device event data in
the context of post-market surveillance, pharmacovigilance, signal detection
and trending, and regulatory reporting. Primary inputs are data on events by
device and data on exposures by device. Outputs include: standardized
device-event and exposure datasets, defined analyses, and time series.
Author: Gary Chung [aut, cre]
Maintainer: Gary Chung <gchung05@gmail.com>
Diff between mds versions 0.3.0 dated 2019-07-04 and 0.3.1 dated 2020-03-08
DESCRIPTION | 8 MD5 | 60 NAMESPACE | 20 NEWS.md | 139 + R/data.R | 136 - R/define_analyses.R | 1268 ++++++++--------- R/plot.R | 170 +- R/standardize_device_events.R | 593 ++++---- R/standardize_exposure.R | 440 +++--- R/time_series.R | 1049 +++++++------- R/utils.R | 324 ++-- README.md | 178 +- build/vignette.rds |binary inst/doc/mds_intro.R | 288 ++-- inst/doc/mds_intro.Rmd | 968 ++++++------- inst/doc/mds_intro.html | 2791 +++++++++++++++++++-------------------- man/define_analyses.Rd | 24 man/define_analyses_dataframe.Rd | 2 man/deviceevent.Rd | 19 man/exposure.Rd | 11 man/input_param_checker.Rd | 10 man/next_dev.Rd | 2 man/next_ev.Rd | 2 man/plot.mds_ts.Rd | 3 man/time_series.Rd | 17 tests/testthat.R | 8 tests/testthat/test_da.R | 938 ++++++------- tests/testthat/test_de.R | 330 ++-- tests/testthat/test_exp.R | 220 +-- tests/testthat/test_ts.R | 590 ++++---- vignettes/mds_intro.Rmd | 968 ++++++------- 31 files changed, 5807 insertions(+), 5769 deletions(-)