Wed, 11 Mar 2020

Package uFTIR updated to version 0.1.1 with previous version 0.1.0 dated 2020-03-06

Title: Process and Analyze Agilent Cary 620 FTIR Microscope Images
Description: A set of tools to read, process, and summarize Agilent Cary 620 uFTIR Microscope hyperspectral images primarily intended for microplastic analysis.
Author: Fabio Corradini [aut, cre] (<https://orcid.org/0000-0001-9696-7643>)
Maintainer: Fabio Corradini <fabio.corradini@inia.cl>

Diff between uFTIR versions 0.1.0 dated 2020-03-06 and 0.1.1 dated 2020-03-11

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Package RcppParallel updated to version 5.0.0 with previous version 4.4.4 dated 2019-09-27

Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'. For example, the 'parallelFor()' function can be used to convert the work of a standard serial "for" loop into a parallel one and the 'parallelReduce()' function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut], Romain Francois [aut, cph], Kevin Ushey [aut, cre], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, http://tinythreadpp.bitsnbites.eu/), RStudio [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>

Diff between RcppParallel versions 4.4.4 dated 2019-09-27 and 5.0.0 dated 2020-03-11

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Package qtl updated to version 1.46-2 with previous version 1.45-11 dated 2020-02-02

Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits. Broman et al. (2003) <doi:10.1093/bioinformatics/btg112>.
Author: Karl W Broman <broman@wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, and Brian Yandell
Maintainer: Karl W Broman <broman@wisc.edu>

Diff between qtl versions 1.45-11 dated 2020-02-02 and 1.46-2 dated 2020-03-11

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Package processmapR updated to version 0.3.4 with previous version 0.3.3 dated 2019-02-24

Title: Construct Process Maps Using Event Data
Description: Visualize event logs using directed graphs, i.e. process maps. Part of the 'bupaR' framework.
Author: Gert Janssenswillen [aut, cre], Benoît Depaire [ctb], Felix Mannhardt [ctb], Thijs Beuving [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>

Diff between processmapR versions 0.3.3 dated 2019-02-24 and 0.3.4 dated 2020-03-11

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New package aws.s3 with initial version 0.3.20
Package: aws.s3
Type: Package
Title: 'AWS S3' Client Package
Version: 0.3.20
Authors@R: c(person("Thomas J.", "Leeper", role = "aut", email = "thosjleeper@gmail.com", comment = c(ORCID = "0000-0003-4097-6326")), person("Boettiger", "Carl", role = "ctb"), person("Andrew", "Martin", role = "ctb"), person("Mark", "Thompson", role = "ctb"), person("Tyler", "Hunt", role = "ctb"), person("Steven", "Akins", role = "ctb"), person("Bao", "Nguyen", role = "ctb"), person("Thierry", "Onkelinx", role = "ctb"), person("Andrii", "Degtiarov", role = "ctb"), person("Dhruv", "Aggarwal", role = "ctb"), person("Alyssa", "Columbus", role = "ctb"), person("Simon", "Urbanek", role = c("cre", "ctb"), email = "simon.urbanek@R-project.org") )
Maintainer: Simon Urbanek <simon.urbanek@R-project.org>
Description: A simple client package for the Amazon Web Services ('AWS') Simple Storage Service ('S3') 'REST' 'API' <https://aws.amazon.com/s3/>.
License: GPL (>= 2)
URL: https://github.com/cloudyr/aws.s3
BugReports: https://github.com/cloudyr/aws.s3/issues
Imports: utils, tools, curl, httr, xml2 (> 1.0.0), base64enc, digest, aws.signature (>= 0.3.7)
Suggests: testthat, datasets
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2020-03-11 21:38:47 UTC; svnuser
Author: Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Boettiger Carl [ctb], Andrew Martin [ctb], Mark Thompson [ctb], Tyler Hunt [ctb], Steven Akins [ctb], Bao Nguyen [ctb], Thierry Onkelinx [ctb], Andrii Degtiarov [ctb], Dhruv Aggarwal [ctb], Alyssa Columbus [ctb], Simon Urbanek [cre, ctb]
Repository: CRAN
Date/Publication: 2020-03-11 23:10:18 UTC

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Package RJDemetra updated to version 0.1.5 with previous version 0.1.4 dated 2020-01-09

Title: Interface to 'JDemetra+' Seasonal Adjustment Software
Description: Interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>), the seasonal adjustment software officially recommended to the members of the European Statistical System (ESS) and the European System of Central Banks. It offers full access to all options and outputs of 'JDemetra+', including the two leading seasonal adjustment methods TRAMO/SEATS+ and X-12ARIMA/X-13ARIMA-SEATS.
Author: Alain Quartier-la-Tente [aut, cre] (<https://orcid.org/0000-0001-7890-3857>), Anna Michalek [aut], Jean Palate [aut], Raf Baeyens [aut]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>

Diff between RJDemetra versions 0.1.4 dated 2020-01-09 and 0.1.5 dated 2020-03-11

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Package linkcomm updated to version 1.0-12 with previous version 1.0-11 dated 2014-08-13

Title: Tools for Generating, Visualizing, and Analysing Link Communities in Networks
Description: Link communities reveal the nested and overlapping structure in networks, and uncover the key nodes that form connections to multiple communities. linkcomm provides a set of tools for generating, visualizing, and analysing link communities in networks of arbitrary size and type. The linkcomm package also includes tools for generating, visualizing, and analysing Overlapping Cluster Generator (OCG) communities.
Author: Alex T. Kalinka <alex.t.kalinka@gmail.com>, with contributions from Alain Guenoche
Maintainer: Alex T. Kalinka <alex.t.kalinka@gmail.com>

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Package binsmooth updated to version 0.2.2 with previous version 0.2.1 dated 2019-10-27

Title: Generate PDFs and CDFs from Binned Data
Description: Provides several methods for generating density functions based on binned data. Methods include step function, recursive subdivision, and optimized spline. Data are assumed to be nonnegative, the top bin is assumed to have no upper bound, but the bin widths need be equal. All PDF smoothing methods maintain the areas specified by the binned data. (Equivalently, all CDF smoothing methods interpolate the points specified by the binned data.) In practice, an estimate for the mean of the distribution should be supplied as an optional argument. Doing so greatly improves the reliability of statistics computed from the smoothed density functions. Includes methods for estimating the Gini coefficient, the Theil index, percentiles, and random deviates from a smoothed distribution. Among the three methods, the optimized spline (splinebins) is recommended for most purposes. The percentile and random-draw methods should be regarded as experimental, and these methods only support splinebins.
Author: David J. Hunter and McKalie Drown
Maintainer: Dave Hunter <dhunter@westmont.edu>

Diff between binsmooth versions 0.2.1 dated 2019-10-27 and 0.2.2 dated 2020-03-11

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Package PMwR updated to version 0.14-0 with previous version 0.12-0 dated 2019-08-26

Title: Portfolio Management with R
Description: Functions and examples for 'Portfolio Management with R': backtesting investment and trading strategies, computing profit/loss and returns, analysing trades, handling lists of transactions, reporting, and more.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>

Diff between PMwR versions 0.12-0 dated 2019-08-26 and 0.14-0 dated 2020-03-11

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Package krige updated to version 0.4.1 with previous version 0.3-1 dated 2019-10-29

Title: Geospatial Kriging with Metropolis Sampling
Description: Estimates kriging models for geographical point-referenced data. Method is described in Monogan and Gill (2016) <doi:10.1017/psrm.2015.5>.
Author: Jason S. Byers [aut, cre], Jeff Gill [aut], James E. Monogan III [aut], Jamie Carson [aut], Le Bao [aut]
Maintainer: Jason S. Byers <jaybyers55@gmail.com>

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Package apyramid updated to version 0.1.1 with previous version 0.1.0 dated 2020-01-13

Title: Visualize Population Pyramids Aggregated by Age
Description: Provides a quick method for visualizing non-aggregated line-list or aggregated census data stratified by age and one or two categorical variables (e.g. gender and health status) with any number of values. It returns a 'ggplot' object, allowing the user to further customize the output. This package is part of the 'R4Epis' project <https://r4epis.netlify.com>.
Author: Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>), Alex Spina [ctb]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>

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Package workflowr updated to version 1.6.1 with previous version 1.6.0 dated 2019-12-19

Title: A Framework for Reproducible and Collaborative Data Science
Description: Provides a workflow for your analysis projects by combining literate programming ('knitr' and 'rmarkdown') and version control ('Git', via 'git2r') to generate a website containing time-stamped, versioned, and documented results.
Author: John Blischak [aut, cre] (<https://orcid.org/0000-0003-2634-9879>), Peter Carbonetto [aut] (<https://orcid.org/0000-0003-1144-6780>), Matthew Stephens [aut] (<https://orcid.org/0000-0001-5397-9257>), Luke Zappia [ctb] (Instructions for hosting with GitLab), Pierre Formont [ctb] (Support for hosting with Shiny Server), Tim Trice [ctb] (Instructions for sharing common code), Jiaxiang Li [ctb] (Function wflow_toc() to create table of contents), Michael J. Kane [ctb] (<https://orcid.org/0000-0003-1899-6662>, Option suppress_report)
Maintainer: John Blischak <jdblischak@uchicago.edu>

Diff between workflowr versions 1.6.0 dated 2019-12-19 and 1.6.1 dated 2020-03-11

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Package transport updated to version 0.12-2 with previous version 0.12-1 dated 2019-08-19

Title: Computation of Optimal Transport Plans and Wasserstein Distances
Description: Solve optimal transport problems. Compute Wasserstein distances (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p distances), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.
Author: Dominic Schuhmacher [aut, cre], Björn Bähre [aut] (aha and power diagrams), Nicolas Bonneel [aut] (networkflow), Carsten Gottschlich [aut] (simplex and shortlist), Valentin Hartmann [aut] (semidiscrete1), Florian Heinemann [aut] (transport_track and networkflow integration), Bernhard Schmitzer [aut] (shielding), Jörn Schrieber [aut] (subsampling), Timo Wilm [ctb] (wpp)
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>

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Package BEDMatrix updated to version 2.0.2 with previous version 2.0.1 dated 2019-12-16

Title: Extract Genotypes from a PLINK .bed File
Description: A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
Author: Alexander Grueneberg [aut, cre], Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>

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Package spant updated to version 1.2.0 with previous version 1.1.0 dated 2020-03-01

Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data. <https://martin3141.github.io/spant/>.
Author: Martin Wilson [cre, aut], John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>

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Package roxygen2 updated to version 7.1.0 with previous version 7.0.2 dated 2019-12-02

Title: In-Line Documentation for R
Description: Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted comments. Writing documentation in-line with code makes it easier to keep your documentation up-to-date as your requirements change. 'Roxygen2' is inspired by the 'Doxygen' system for C++.
Author: Hadley Wickham [aut, cre, cph] (<https://orcid.org/0000-0003-4757-117X>), Peter Danenberg [aut, cph], Gábor Csárdi [aut], Manuel Eugster [aut, cph], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package ITNr updated to version 0.6.0 with previous version 0.3.0 dated 2018-10-11

Title: Analysis of the International Trade Network
Description: Functions to clean and process international trade data into an international trade network (ITN) are provided. It then provides a set a functions to undertake analysis and plots of the ITN (extract the backbone, centrality, blockmodels, clustering). Examining the key players in the ITN and regional trade patterns.
Author: Matthew Smith
Maintainer: Matthew Smith <matt_smith.90@hotmail.co.uk>

Diff between ITNr versions 0.3.0 dated 2018-10-11 and 0.6.0 dated 2020-03-11

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Package ggfortify updated to version 0.4.9 with previous version 0.4.8 dated 2019-11-10

Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.
Author: Masaaki Horikoshi [aut], Yuan Tang [aut, cre] (<https://orcid.org/0000-0001-5243-233X>), Austin Dickey [ctb], Matthias Grenié [ctb], Ryan Thompson [ctb], Luciano Selzer [ctb], Dario Strbenac [ctb], Kirill Voronin [ctb]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>

Diff between ggfortify versions 0.4.8 dated 2019-11-10 and 0.4.9 dated 2020-03-11

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Package car updated to version 3.0-7 with previous version 3.0-6 dated 2019-12-23

Title: Companion to Applied Regression
Description: Functions to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage, 2019.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Brad Price [aut], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Ben Bolker [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Pavel Krivitsky [ctb], Rafael Laboissiere [ctb], Martin Maechler [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley [ctb], William Venables [ctb], Steve Walker [ctb], David Winsemius [ctb], Achim Zeileis [ctb], R-Core [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>

Diff between car versions 3.0-6 dated 2019-12-23 and 3.0-7 dated 2020-03-11

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Package nloptr updated to version 1.2.2.1 with previous version 1.2.2 dated 2020-02-29

Title: R Interface to NLopt
Description: Solve optimization problems using an R interface to NLopt. NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. See <http://ab-initio.mit.edu/wiki/index.php/NLopt_Introduction> for more information on the available algorithms. During installation of nloptr on Unix-based systems, the installer checks whether the NLopt library is installed on the system. If the NLopt library cannot be found, the code is compiled using the NLopt source included in the nloptr package.
Author: Jelmer Ypma [aut, cre], Steven G. Johnson [aut] (author of the NLopt C library), Hans W. Borchers [ctb], Dirk Eddelbuettel [ctb], Brian Ripley [ctb] (build process on multiple OS), Kurt Hornik [ctb] (build process on multiple OS), Julien Chiquet [ctb], Avraham Adler [ctb] (removal deprecated calls from tests, <https://orcid.org/0000-0002-3039-0703>)
Maintainer: Jelmer Ypma <uctpjyy@ucl.ac.uk>

Diff between nloptr versions 1.2.2 dated 2020-02-29 and 1.2.2.1 dated 2020-03-11

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Package hydroTSM updated to version 0.6-0 with previous version 0.5-1 dated 2017-08-07

Title: Time Series Management, Analysis and Interpolation for Hydrological Modelling
Description: S3 functions for management, analysis, interpolation and plotting of time series used in hydrology and related environmental sciences. In particular, this package is highly oriented to hydrological modelling tasks. The focus of this package has been put in providing a collection of tools useful for the daily work of hydrologists (although an effort was made to optimise each function as much as possible, functionality has had priority over speed). Bugs / comments / questions / collaboration of any kind are very welcomed, and in particular, datasets that can be included in this package for academic purposes.
Author: Mauricio Zambrano-Bigiarini [aut, cre, cph] (<https://orcid.org/0000-0002-9536-643X>)
Maintainer: Mauricio Zambrano-Bigiarini <mzb.devel@gmail.com>

Diff between hydroTSM versions 0.5-1 dated 2017-08-07 and 0.6-0 dated 2020-03-11

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New package aibd with initial version 0.1.7
Package: aibd
Type: Package
Title: Attraction Indian Buffet Distribution
Version: 0.1.7
Authors@R: c(person(given="David B.",family="Dahl",role=c("aut","cre"),email="dahl@stat.byu.edu"),person(given="Richard",family="Warr",role=c("aut"),email="warr@stat.byu.edu"),person(given="Jeremy",family="Meyer",role=c("aut"),email="jeremymeyer23@hotmail.com"))
Description: An implementation of probability mass function and sampling algorithms is provided for the attraction Indian buffet distribution (AIBD), originally from Dahl (2016) <https://ww2.amstat.org/meetings/jsm/2016/onlineprogram/ActivityDetails.cfm?SessionID=213038>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: rscala (>= 3.2.18), commonsMath (>= 1.2.5)
RoxygenNote: 7.0.2
Suggests: testthat
NeedsCompilation: no
Packaged: 2020-03-04 13:24:18 UTC; dahl
Author: David B. Dahl [aut, cre], Richard Warr [aut], Jeremy Meyer [aut]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Repository: CRAN
Date/Publication: 2020-03-11 16:40:02 UTC

More information about aibd at CRAN
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Package SDMtune updated to version 1.1.0 with previous version 1.0.1 dated 2019-12-17

Title: Species Distribution Model Selection
Description: User-friendly framework that enables the training and the evaluation of species distribution models (SDMs). The package implements functions for data driven variable selection and model tuning and includes numerous utilities to display the results. All the functions used to select variables or to tune model hyperparameters have an interactive real-time chart displayed in the 'RStudio' viewer pane during their execution.
Author: Sergio Vignali [aut, cre] (<https://orcid.org/0000-0002-3390-5442>), Arnaud Barras [aut] (<https://orcid.org/0000-0003-0850-6965>), Veronika Braunisch [aut] (<https://orcid.org/0000-0001-7035-4662>), Conservation Biology - University of Bern [fnd]
Maintainer: Sergio Vignali <sergio.vignali@iee.unibe.ch>

Diff between SDMtune versions 1.0.1 dated 2019-12-17 and 1.1.0 dated 2020-03-11

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More information about SDMtune at CRAN
Permanent link

Package phase1RMD updated to version 1.0.9 with previous version 1.0.8 dated 2017-11-27

Title: Repeated Measurement Design for Phase I Clinical Trial
Description: Implements our Bayesian phase I repeated measurement design that accounts for multidimensional toxicity endpoints from multiple treatment cycles. The package also provides a novel design to account for both multidimensional toxicity endpoints and early-stage efficacy endpoints in the phase I design. For both designs, functions are provided to recommend the next dosage selection based on the data collected in the available patient cohorts and to simulate trial characteristics given design parameters. Yin, Jun, et al. (2017) <doi:10.1002/sim.7134>.
Author: Jun Yin, Yu Du, Sumithra Mandrekar
Maintainer: Jun Yin <vivien.jyin@gmail.com>

Diff between phase1RMD versions 1.0.8 dated 2017-11-27 and 1.0.9 dated 2020-03-11

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New package factor.switching with initial version 1.0
Package: factor.switching
Type: Package
Title: Post-Processing MCMC Outputs of Bayesian Factor Analytic Models
Version: 1.0
Date: 2020-03-04
Authors@R: c(person(given = "Panagiotis", family = "Papastamoulis", email = "papapast@yahoo.gr", role = c( "aut", "cre"), comment = c(ORCID = "0000-0001-9468-7613")))
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Description: A well known identifiability issue in factor analytic models is the invariance with respect to orthogonal transformations. This problem burdens the inference under a Bayesian setup, where Markov chain Monte Carlo (MCMC) methods are used to generate samples from the posterior distribution. The package applies a series of rotation, sign and permutation transformations into raw MCMC samples of factor loadings, which are provided by the user. The post-processed output is identifiable and can be used for MCMC inference on any parametric function of factor loadings. Comparison of multiple MCMC chains is also possible.
Imports: coda, HDInterval, lpSolve
License: GPL-2
NeedsCompilation: no
Packaged: 2020-03-04 08:03:14 UTC; mqbssppe
Author: Panagiotis Papastamoulis [aut, cre] (<https://orcid.org/0000-0001-9468-7613>)
Repository: CRAN
Date/Publication: 2020-03-11 16:00:02 UTC

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Package AzureContainers updated to version 1.2.1 with previous version 1.2.0 dated 2019-12-03

Title: Interface to 'Container Instances', 'Docker Registry' and 'Kubernetes' in 'Azure'
Description: An interface to container functionality in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/overview/containers/>. Manage 'Azure Container Instance' (ACI), 'Azure Container Registry' (ACR) and 'Azure Kubernetes Service' (AKS) resources, push and pull images, and deploy services. On the client side, lightweight shells to the 'docker', 'docker-compose', 'kubectl' and 'helm' commandline tools are provided. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre], Bill Liang [ctb] (Assistance debugging MMLS on Kubernetes), Ramkumar Chandrasekaran [ctb] (Original blog article on Dockerising MMLS), Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>

Diff between AzureContainers versions 1.2.0 dated 2019-12-03 and 1.2.1 dated 2020-03-11

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More information about AzureContainers at CRAN
Permanent link

New package aws.translate with initial version 0.1.4
Package: aws.translate
Type: Package
Title: Client for 'AWS Translate'
Version: 0.1.4
Date: 2020-03-10
Authors@R: c(person("Thomas J.", "Leeper", role = c("aut"), email = "thosjleeper@gmail.com", comment = c(ORCID = "0000-0003-4097-6326")), person("Antoine", "Sachet", role = c("cre"), email = "antoine.sac@gmail.com"))
Description: A client for 'AWS Translate' <https://aws.amazon.com/documentation/translate>, a machine translation service that will convert a text input in one language into a text output in another language.
License: GPL (>= 2)
URL: https://github.com/cloudyr/aws.translate
BugReports: https://github.com/cloudyr/aws.translate/issues
Imports: httr, jsonlite, aws.signature (>= 0.3.4)
Encoding: UTF-8
RoxygenNote: 7.0.2
NeedsCompilation: no
Packaged: 2020-03-11 14:54:15 UTC; asac
Author: Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Antoine Sachet [cre]
Maintainer: Antoine Sachet <antoine.sac@gmail.com>
Repository: CRAN
Date/Publication: 2020-03-11 15:50:02 UTC

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Package sentometrics updated to version 0.8.1 with previous version 0.8.0 dated 2020-01-13

Title: An Integrated Framework for Textual Sentiment Time Series Aggregation and Prediction
Description: Optimized prediction based on textual sentiment, accounting for the intrinsic challenge that sentiment can be computed and pooled across texts and time in various ways. See Ardia et al. (2020) <doi:10.2139/ssrn.3067734>.
Author: Samuel Borms [aut, cre] (<https://orcid.org/0000-0001-9533-1870>), David Ardia [aut] (<https://orcid.org/0000-0003-2823-782X>), Keven Bluteau [aut] (<https://orcid.org/0000-0003-2990-4807>), Kris Boudt [aut] (<https://orcid.org/0000-0002-1000-5142>), Jeroen Van Pelt [ctb], Andres Algaba [ctb]
Maintainer: Samuel Borms <samuel.borms@unine.ch>

Diff between sentometrics versions 0.8.0 dated 2020-01-13 and 0.8.1 dated 2020-03-11

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Package rromeo updated to version 0.1.1 with previous version 0.1.0 dated 2019-05-16

Title: Access Publisher Copyright & Self-Archiving Policies via the 'SHERPA/RoMEO' API
Description: Fetches information from the 'SHERPA/RoMEO' API <http://www.sherpa.ac.uk/romeo/apimanual.php> which indexes policies of journal regarding the archival of scientific manuscripts before and/or after peer-review as well as formatted manuscripts.
Author: Matthias Grenié [aut, cre] (<https://orcid.org/0000-0002-4659-7522>), Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>)
Maintainer: Matthias Grenié <matthias.grenie@gmail.com>

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Package ropenblas updated to version 0.2.2 with previous version 0.2.1 dated 2020-02-06

Title: Download, Compile and Link 'OpenBLAS' Library with R
Description: The 'ropenblas' package (<https://prdm0.github.io/ropenblas/>) is useful for users of any 'GNU/Linux' distribution. It will be possible to download, compile and link the 'OpenBLAS' library (<https://www.openblas.net/>) with the R language, always by the same procedure, regardless of the 'GNU/Linux' distribution used. With the 'ropenblas' package it is possible to download, compile and link the latest version of the 'OpenBLAS' library even the repositories of the 'GNU/Linux' distribution used do not include the latest versions of 'OpenBLAS'. If of interest, older versions of the 'OpenBLAS' library may be considered. Linking R with an optimized version of 'BLAS' (<http://www.netlib.org/blas/>) may improve the computational performance of R code. The 'OpenBLAS' library is an optimized implementation of 'BLAS' that can be easily linked to R with the 'ropenblas' package.
Author: Pedro Rafael D. Marinho [aut, cre]
Maintainer: Pedro Rafael D. Marinho <pedro.rafael.marinho@gmail.com>

Diff between ropenblas versions 0.2.1 dated 2020-02-06 and 0.2.2 dated 2020-03-11

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Package naijR updated to version 0.0.7 with previous version 0.0.6 dated 2020-02-11

Title: Operations to Ease Data Analyses Specific to Nigeria
Description: A set of convenience functions as well as geographical/political data about Nigeria, aimed at simplifying work with data and information that are specific to the country.
Author: Victor Ordu [aut, cre] (<https://orcid.org/0000-0003-3716-0668>)
Maintainer: Victor Ordu <victorordu@outlook.com>

Diff between naijR versions 0.0.6 dated 2020-02-11 and 0.0.7 dated 2020-03-11

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Package daewr updated to version 1.2-2 with previous version 1.1-8 dated 2020-01-16

Title: Design and Analysis of Experiments with R
Description: Contains Data frames and functions used in the book "Design and Analysis of Experiments with R".
Author: John Lawson [aut, cre], Gerhard Krennrich [aut]
Maintainer: John Lawson <lawsonjsl7net@gmail.com>

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New package datapackage.r with initial version 1.3.0
Package: datapackage.r
Type: Package
Title: Data Package 'Frictionless Data'
Version: 1.3.0
Date: 2020-03-11
Authors@R: c(person("Kleanthis", "Koupidis", email = "koupidis@okfn.gr", role = c("aut", "cre")), person("Lazaros", "Ioannidis", email = "larjohn@gmail.com", role = "aut"), person("Charalampos", "Bratsas", email = "cbratsas@math.auth.gr", role = "aut"), person("Open Knowledge International", email = "info@okfn.org", role = "cph"))
Maintainer: Kleanthis Koupidis <koupidis@okfn.gr>
Description: Work with 'Frictionless Data Packages' (<https://frictionlessdata.io/specs/data-package/>). Allows to load and validate any descriptor for a data package profile, create and modify descriptors and provides expose methods for reading and streaming data in the package. When a descriptor is a 'Tabular Data Package', it uses the 'Table Schema' package (<https://CRAN.R-project.org/package=tableschema.r>) and exposes its functionality, for each resource object in the resources field.
URL: https://github.com/frictionlessdata/datapackage-r
License: MIT + file LICENSE
BugReports: https://github.com/frictionlessdata/datapackage-r/issues
Encoding: UTF-8
LazyData: true
Imports: config, future, httr, iterators, jsonlite, jsonvalidate, purrr, R6, R.utils, readr, rlist, stringr, tableschema.r, tools, urltools, utils, V8
Suggests: covr, curl, data.table, DBI, devtools, foreach, httptest, knitr, rmarkdown, RSQLite, testthat
Collate: 'DataPackageError.R' 'Package.R' 'helpers.R' 'profile.R' 'binary.readable.connection.r' 'binary.readable.r' 'datapackage.r.R' 'infer.R' 'is.valid.R' 'resource.R' 'validate.R'
RoxygenNote: 7.0.2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-03-11 11:12:28 UTC; kleanthis-okfngr
Author: Kleanthis Koupidis [aut, cre], Lazaros Ioannidis [aut], Charalampos Bratsas [aut], Open Knowledge International [cph]
Repository: CRAN
Date/Publication: 2020-03-11 13:20:02 UTC

More information about datapackage.r at CRAN
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New package aws.transcribe with initial version 0.1.3
Package: aws.transcribe
Type: Package
Title: Client for 'AWS Transcribe'
Version: 0.1.3
Date: 2020-03-10
Authors@R: c(person("Thomas J.", "Leeper", role = c("aut"), email = "thosjleeper@gmail.com", comment = c(ORCID = "0000-0003-4097-6326")), person("Antoine", "Sachet", role = c("cre"), email = "antoine.sac@gmail.com"))
Description: Client for 'AWS Transcribe' <https://aws.amazon.com/documentation/transcribe>, a cloud transcription service that can convert an audio media file in English and other languages into a text transcript.
License: GPL (>= 2)
URL: https://github.com/cloudyr/aws.transcribe
BugReports: https://github.com/cloudyr/aws.transcribe/issues
Imports: tools, httr, jsonlite, aws.signature (>= 0.3.4)
Suggests: testthat
Encoding: UTF-8
RoxygenNote: 7.0.2
NeedsCompilation: no
Packaged: 2020-03-11 12:18:34 UTC; asac
Author: Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Antoine Sachet [cre]
Maintainer: Antoine Sachet <antoine.sac@gmail.com>
Repository: CRAN
Date/Publication: 2020-03-11 13:20:06 UTC

More information about aws.transcribe at CRAN
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Package AsioHeaders updated to version 1.12.2-1 with previous version 1.12.1 dated 2018-09-10

Title: 'Asio' C++ Header Files
Description: 'Asio' is a cross-platform C++ library for network and low-level I/O programming that provides developers with a consistent asynchronous model using a modern C++ approach. It is also included in Boost but requires linking when used with Boost. Standalone it can be used header-only (provided a recent compiler). 'Asio' is written and maintained by Christopher M. Kohlhoff, and released under the 'Boost Software License', Version 1.0.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between AsioHeaders versions 1.12.1 dated 2018-09-10 and 1.12.2-1 dated 2020-03-11

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Package SynthTools updated to version 1.0.1 with previous version 1.0.0 dated 2019-09-04

Title: Tools and Tests for Experiments with Partially Synthetic Data Sets
Description: A set of functions to support experimentation in the utility of partially synthetic data sets. All functions compare an observed data set to one or a set of partially synthetic data sets derived from the observed data to (1) check that data sets have identical attributes, (2) calculate overall and specific variable perturbation rates, (3) check for potential logical inconsistencies, and (4) calculate confidence intervals and standard errors of desired variables in multiple imputed data sets. Confidence interval and standard error formulas have options for either synthetic data sets or multiple imputed data sets. For more information on the formulas and methods used, see Reiter & Raghunathan (2007) <doi:10.1198/016214507000000932>.
Author: Charlotte Looby [aut, cre]
Maintainer: Charlotte Looby <clooby@rti.org>

Diff between SynthTools versions 1.0.0 dated 2019-09-04 and 1.0.1 dated 2020-03-11

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Package ODB updated to version 1.2.1 with previous version 1.1.1 dated 2012-07-23

Title: Open Document Databases (.odb) Management
Description: Functions to create, connect, update and query 'HSQL' databases embedded in Open Document Databases files, as 'OpenOffice' and 'LibreOffice' do.
Author: Sylvain Mareschal
Maintainer: Sylvain Mareschal <maressyl@gmail.com>

Diff between ODB versions 1.1.1 dated 2012-07-23 and 1.2.1 dated 2020-03-11

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Package natmanager updated to version 0.4.0 with previous version 0.1.0 dated 2020-02-11

Title: Install the 'Natverse' Packages from Scratch
Description: Provides streamlined installation for packages from the 'natverse', a suite of R packages for computational neuroanatomy built on top of the 'nat' 'NeuroAnatomy Toolbox' package. Installation of the complete 'natverse' suite requires a 'GitHub' user account and personal access token 'GITHUB_PAT'. 'natmanager' will help the end user set this up if necessary.
Author: Sridhar Jagannathan [aut, cre] (<https://orcid.org/0000-0002-2078-1145>), Gregory Jefferis [aut] (<https://orcid.org/0000-0002-0587-9355>)
Maintainer: Sridhar Jagannathan <j.sridharrajan@gmail.com>

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New package aws.polly with initial version 0.1.5
Package: aws.polly
Type: Package
Title: Client for AWS Polly
Version: 0.1.5
Date: 2020-03-10
Authors@R: c(person("Thomas J.", "Leeper", role = c("aut"), email = "thosjleeper@gmail.com", comment = c(ORCID = "0000-0003-4097-6326")), person("Antoine", "Sachet", role = c("cre"), email = "antoine.sac@gmail.com"))
Description: A client for AWS Polly <http://aws.amazon.com/documentation/polly>, a speech synthesis service.
License: GPL (>= 2)
URL: https://github.com/cloudyr/aws.polly
BugReports: https://github.com/cloudyr/aws.polly/issues
Imports: httr, jsonlite, aws.signature (>= 0.3.4), tuneR
Encoding: UTF-8
RoxygenNote: 7.0.2
NeedsCompilation: no
Packaged: 2020-03-11 11:57:40 UTC; asac
Author: Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>), Antoine Sachet [cre]
Maintainer: Antoine Sachet <antoine.sac@gmail.com>
Repository: CRAN
Date/Publication: 2020-03-11 12:40:05 UTC

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Permanent link

Package vtreat updated to version 1.6.0 with previous version 1.5.2 dated 2020-02-08

Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner. 'vtreat' prepares variables so that data has fewer exceptional cases, making it easier to safely use models in production. Common problems 'vtreat' defends against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new categorical levels (levels seen during application, but not during training). Reference: "'vtreat': a data.frame Processor for Predictive Modeling", Zumel, Mount, 2016, <DOI:10.5281/zenodo.1173313>.
Author: John Mount [aut, cre], Nina Zumel [aut], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

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Package rmdformats updated to version 0.3.7 with previous version 0.3.6 dated 2019-12-16

Title: HTML Output Formats and Templates for 'rmarkdown' Documents
Description: HTML formats and templates for 'rmarkdown' documents, with some extra features such as automatic table of contents, lightboxed figures, dynamic crosstab helper.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>

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Package raptr updated to version 0.1.6 with previous version 0.1.5 dated 2020-02-12

Title: Representative and Adequate Prioritization Toolkit in R
Description: Biodiversity is in crisis. The overarching aim of conservation is to preserve biodiversity patterns and processes. To this end, protected areas are established to buffer species and preserve biodiversity processes. But resources are limited and so protected areas must be cost-effective. This package contains tools to generate plans for protected areas (prioritizations), using spatially explicit targets for biodiversity patterns and processes. To obtain solutions in a feasible amount of time, this package uses the commercial 'Gurobi' software package (obtained from <http://www.gurobi.com/>). For more information on using this package, see Hanson et al. (2018) <doi:10.1111/2041-210X.12862>.
Author: Jeffrey O Hanson [aut, cre], Jonathan R Rhodes [aut], Hugh P Possingham [aut], Richard A Fuller [aut]
Maintainer: Jeffrey O Hanson <jeffrey.hanson@uqconnect.edu.au>

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Package oppr updated to version 1.0.1 with previous version 1.0.0 dated 2020-02-07

Title: Optimal Project Prioritization
Description: A decision support tool for prioritizing conservation projects. Prioritizations can be developed by maximizing expected feature richness, expected phylogenetic diversity, the number of features that meet persistence targets, or identifying a set of projects that meet persistence targets for minimal cost. Constraints (e.g. lock in specific actions) and feature weights can also be specified to further customize prioritizations. After defining a project prioritization problem, solutions can be obtained using exact algorithms, heuristic algorithms, or random processes. In particular, it is recommended to install the 'Gurobi' optimizer (available from <https://www.gurobi.com>) because it can identify optimal solutions very quickly. Finally, methods are provided for comparing different prioritizations and evaluating their benefits. For more information, see Hanson et al. (2019) <doi:10.1111/2041-210X.13264>.
Author: Jeffrey O Hanson [aut, cre], Richard Schuster [aut], Matthew Strimas-Mackey [aut], Joseph Bennett [aut]
Maintainer: Jeffrey O Hanson <jeffrey.hanson@uqconnect.edu.au>

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New package bbl with initial version 0.3.1
Package: bbl
Title: Boltzmann Bayes Learner
Version: 0.3.1
Authors@R: c(person("Jun","Woo",role=c("aut","cre"), email="junwoo035@gmail.com", comment=c(ORCID="0000-0003-3220-2064")), person("Jinhua","Wang", role=c("ctb")))
Maintainer: Jun Woo <junwoo035@gmail.com>
Depends: R (>= 3.6.0)
Imports: methods, stats, utils, Rcpp (>= 0.12.16), pROC, RColorBrewer
Description: Supervised learning using Boltzmann Bayes model inference, which extends naive Bayes model to include interactions. Enables classification of data into multiple response groups based on a large number of discrete predictors that can take factor values of heterogeneous levels. Either pseudo-likelihood or mean field inference can be used with L2 regularization, cross-validation, and prediction on new data. Woo et al. (2016) <doi:10.1186/s12864-016-2871-3>.
License: GPL (>= 2)
LinkingTo: Rcpp
Encoding: UTF-8
RoxygenNote: 7.0.0
NeedsCompilation: yes
Suggests: glmnet, BiocManager, Biostrings
Author: Jun Woo [aut, cre] (<https://orcid.org/0000-0003-3220-2064>), Jinhua Wang [ctb]
Repository: CRAN
Packaged: 2020-03-11 02:50:12 UTC; junwoo
Date/Publication: 2020-03-11 11:30:03 UTC

More information about bbl at CRAN
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Package RBaseX updated to version 0.2.4 with previous version 0.1.4 dated 2019-12-22

Title: 'BaseX' Client
Description: 'BaseX' <http://basex.org> is a XML database engine and a compliant 'XQuery 3.1' processor with full support of 'W3C Update Facility'. This package is a full client-implementation of the client/server protocol for 'BaseX' and provides functionalities to create, manipulate and query on XML-data.
Author: Ben Engbers [aut, cre]
Maintainer: Ben Engbers <Ben.Engbers@Be-Logical.nl>

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Package QCA updated to version 3.7 with previous version 3.6 dated 2019-11-17

Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis: crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA') and fuzzy sets ('fsQCA'), using a GUI - graphical user interface. 'QCA' is a methodology that bridges the qualitative and quantitative divide in social science research. It uses a Boolean algorithm that results in a minimal causal combination that explains a given phenomenon.
Author: Adrian Dusa [aut, cre, cph], Ciprian Paduraru [ctb], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/gui/www/shared/jquery-AUTHORS.txt), Vasil Dinkov [ctb, cph] (jquery.smartmenus.js library), Dmitry Baranovskiy [ctb, cph] (raphael.js library), Emmanuel Quentin [ctb, cph] (raphael.inline_text_editing.js library), Jimmy Breck-McKye [ctb, cph] (raphael-paragraph.js library), Alrik Thiem [aut] (from version 1.0-0 up to version 1.1-3)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>

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Package xml2 updated to version 1.2.5 with previous version 1.2.4 dated 2020-03-10

Title: Parse XML
Description: Work with XML files using a simple, consistent interface. Built on top of the 'libxml2' C library.
Author: Hadley Wickham [aut], Jim Hester [aut, cre], Jeroen Ooms [aut], RStudio [cph], R Foundation [ctb] (Copy of R-project homepage cached as example)
Maintainer: Jim Hester <jim.hester@rstudio.com>

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Package rcdk updated to version 3.5.0 with previous version 3.4.7.2 dated 2019-12-21

Title: Interface to the 'CDK' Libraries
Description: Allows the user to access functionality in the 'CDK', a Java framework for chemoinformatics. This allows the user to load molecules, evaluate fingerprints, calculate molecular descriptors and so on. In addition, the 'CDK' API allows the user to view structures in 2D.
Author: Rajarshi Guha [aut, cph], Zachary Charlop-Powers [cre], Emma Schymanski [ctb]
Maintainer: Zachary Charlop-Powers <zach.charlop.powers@gmail.com>

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Package ingredients updated to version 1.1 with previous version 1.0 dated 2020-02-18

Title: Effects and Importances of Model Ingredients
Description: Collection of tools for assessment of feature importance and feature effects. Key functions are: feature_importance() for assessment of global level feature importance, ceteris_paribus() for calculation of the what-if plots, partial_dependence() for partial dependence plots, conditional_dependence() for conditional dependence plots, accumulated_dependence() for accumulated local effects plots, aggregate_profiles() and cluster_profiles() for aggregation of ceteris paribus profiles, generic print() and plot() for better usability of selected explainers, generic plotD3() for interactive, D3 based explanations, and generic describe() for explanations in natural language. The package 'ingredients' is a part of the 'DrWhy.AI' universe (Biecek 2018) <arXiv:1806.08915>.
Author: Przemyslaw Biecek [aut, cre] (<https://orcid.org/0000-0001-8423-1823>), Hubert Baniecki [aut] (<https://orcid.org/0000-0001-6661-5364>), Adam Izdebski [aut]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>

Diff between ingredients versions 1.0 dated 2020-02-18 and 1.1 dated 2020-03-11

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Package dataRetrieval updated to version 2.7.6 with previous version 2.7.5 dated 2019-06-05

Title: Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey (USGS) and U.S. Environmental Protection Agency (EPA) water quality and hydrology data from web services. USGS web services are discovered from National Water Information System (NWIS) <https://waterservices.usgs.gov/> and <https://waterdata.usgs.gov/nwis>. Both EPA and USGS water quality data are obtained from the Water Quality Portal <https://www.waterqualitydata.us/>.
Author: Laura DeCicco [aut, cre] (<https://orcid.org/0000-0002-3915-9487>), Robert Hirsch [aut] (<https://orcid.org/0000-0002-4534-075X>), David Lorenz [aut], Jordan Read [ctb], Jordan Walker [ctb], Lindsay Carr [ctb], David Watkins [aut] (<https://orcid.org/0000-0002-7544-0700>)
Maintainer: Laura DeCicco <ldecicco@usgs.gov>

Diff between dataRetrieval versions 2.7.5 dated 2019-06-05 and 2.7.6 dated 2020-03-11

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Package BMA updated to version 3.18.12 with previous version 3.18.11 dated 2019-11-22

Title: Bayesian Model Averaging
Description: Package for Bayesian model averaging and variable selection for linear models, generalized linear models and survival models (cox regression).
Author: Adrian Raftery <raftery@uw.edu>, Jennifer Hoeting, Chris Volinsky, Ian Painter, Ka Yee Yeung
Maintainer: Hana Sevcikova <hanas@uw.edu>

Diff between BMA versions 3.18.11 dated 2019-11-22 and 3.18.12 dated 2020-03-11

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Package gof (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-02-25 1.0.0

Permanent link
Package jmvconnect updated to version 1.2.8 with previous version 1.0.9 dated 2019-09-01

Title: Connect to the 'jamovi' Statistical Spreadsheet
Description: Methods to access data sets from the 'jamovi' statistical spreadsheet (see <https://www.jamovi.org> for more information) from R.
Author: Jonathon Love [aut, cre]
Maintainer: Jonathon Love <jon@thon.cc>

Diff between jmvconnect versions 1.0.9 dated 2019-09-01 and 1.2.8 dated 2020-03-11

 DESCRIPTION       |   12 -
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 src/column.h      |   32 +++++
 src/dataset.cpp   |   21 +--
 src/dataset.h     |    4 
 src/level.h       |   13 +-
 src/memorymap.cpp |    2 
 src/memorymap.h   |    2 
 src/readdf.cpp    |   40 +++++-
 10 files changed, 427 insertions(+), 42 deletions(-)

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Package basket updated to version 0.10.1 with previous version 0.9.10 dated 2019-10-23

Title: Basket Trial Analysis
Description: Implementation of multisource exchangeability models for Bayesian analyses of prespecified subgroups arising in the context of basket trial design and monitoring. The R 'basket' package facilitates implementation of the binary, symmetric multi-source exchangeability model (MEM) with posterior inference arising from both exact computation and Markov chain Monte Carlo sampling. Analysis output includes full posterior samples as well as posterior probabilities, highest posterior density (HPD) interval boundaries, effective sample sizes (ESS), mean and median estimations, posterior exchangeability probability matrices, and maximum a posteriori MEMs. In addition to providing "basketwise" analyses, the package includes similar calculations for "clusterwise" analyses for which subgroups are combined into meta-baskets, or clusters, using graphical clustering algorithms that treat the posterior exchangeability probabilities as edge weights. In addition plotting tools are provided to visualize basket and cluster densities as well as their exchangeability. References include Hyman, D.M., Puzanov, I., Subbiah, V., Faris, J.E., Chau, I., Blay, J.Y., Wolf, J., Raje, N.S., Diamond, E.L., Hollebecque, A. and Gervais, R (2015) <doi:10.1056/NEJMoa1502309>; Hobbs, B.P. and Landin, R. (2018) <doi:10.1002/sim.7893>; Hobbs, B.P., Kane, M.J., Hong, D.S. and Landin, R. (2018) <doi:10.1093/annonc/mdy457>; and Kaizer, A.M., Koopmeiners, J.S. and Hobbs, B.P. (2017) <doi:10.1093/biostatistics/kxx031>.
Author: Nan Chen [aut], Brian Hobbs [aut], Alex Kaizer [aut], Michael J. Kane [aut, cre] (<https://orcid.org/0000-0003-1899-6662>)
Maintainer: Michael J. Kane <michael.kane@yale.edu>

Diff between basket versions 0.9.10 dated 2019-10-23 and 0.10.1 dated 2020-03-11

 basket-0.10.1/basket/DESCRIPTION                            |   11 
 basket-0.10.1/basket/MD5                                    |   80 
 basket-0.10.1/basket/NAMESPACE                              |  227 +-
 basket-0.10.1/basket/NEWS.md                                |    9 
 basket-0.10.1/basket/R/accessors.r                          |   92 
 basket-0.10.1/basket/R/basket.r                             |  395 ++--
 basket-0.10.1/basket/R/mem-exact.r                          |  881 ++++-----
 basket-0.10.1/basket/R/mem-mcmc.r                           |  832 ++++----
 basket-0.10.1/basket/R/package-doc.r                        |   48 
 basket-0.10.1/basket/R/plot.r                               |  273 +-
 basket-0.10.1/basket/R/summary.r                            |   49 
 basket-0.10.1/basket/R/update.r                             |   78 
 basket-0.10.1/basket/R/util.r                               | 1130 +++++-------
 basket-0.10.1/basket/build/vignette.rds                     |binary
 basket-0.10.1/basket/inst/doc/using-the-basket-package.R    |   23 
 basket-0.10.1/basket/inst/doc/using-the-basket-package.Rmd  |   11 
 basket-0.10.1/basket/inst/doc/using-the-basket-package.html |  617 ++----
 basket-0.10.1/basket/man/basket-package.Rd                  |   48 
 basket-0.10.1/basket/man/basket.Rd                          |   56 
 basket-0.10.1/basket/man/basket_map.Rd                      |   12 
 basket-0.10.1/basket/man/basket_pep.Rd                      |   10 
 basket-0.10.1/basket/man/cluster_baskets.Rd                 |   12 
 basket-0.10.1/basket/man/cluster_map.Rd                     |   12 
 basket-0.10.1/basket/man/cluster_membership.Rd              |   12 
 basket-0.10.1/basket/man/cluster_pep.Rd                     |   10 
 basket-0.10.1/basket/man/get_seed.Rd                        |only
 basket-0.10.1/basket/man/mem_exact.Rd                       |   23 
 basket-0.10.1/basket/man/mem_mcmc.Rd                        |   27 
 basket-0.10.1/basket/man/plot_density.Rd                    |   12 
 basket-0.10.1/basket/man/plot_map.Rd                        |   36 
 basket-0.10.1/basket/man/plot_mem.Rd                        |    2 
 basket-0.10.1/basket/man/plot_pep.Rd                        |   41 
 basket-0.10.1/basket/man/plot_pep_graph.Rd                  |only
 basket-0.10.1/basket/man/update_p0.Rd                       |    8 
 basket-0.10.1/basket/tests/testthat/test-errors.r           |    1 
 basket-0.10.1/basket/tests/testthat/test-exact.r            |  152 -
 basket-0.10.1/basket/tests/testthat/test-mcmc.r             |  192 +-
 basket-0.10.1/basket/tests/testthat/test-plot.r             |   18 
 basket-0.10.1/basket/tests/testthat/test-update.r           |   14 
 basket-0.10.1/basket/vignettes/using-the-basket-package.Rmd |   11 
 basket-0.10.1/basket/vignettes/vemu-basket.rds              |only
 basket-0.9.10/basket/inst/code-from-brian                   |only
 basket-0.9.10/basket/inst/working-example                   |only
 basket-0.9.10/basket/vignettes/vemu_basket.rds              |only
 44 files changed, 2816 insertions(+), 2649 deletions(-)

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