Title: Gadget is the Globally-Applicable Area Disaggregated General
Ecosystem Toolbox
Description: A statistical ecosystem modelling package, taking many features of
the ecosystem into account. Gadget works by running an internal
model based on many parameters, and then comparing the data from
the output of this model to real data to get a goodness-of-fit
likelihood score. These parameters can then be adjusted, and the
model re-run, until an optimum is found, which corresponds to the
model with the lowest likelihood score. Gadget allows the user to
include a number of features into an ecosystem model: One or more
species, each of which may be split into multiple stocks; multiple
areas with migration between areas; predation between and within
species; maturation; reproduction and recruitment; multiple
commercial and survey fleets taking catches from the populations.
For more details see <https://hafro.github.io/gadget2>.
This is the C++ Gadget2 runtime, making it available for R.
Author: Bjarki Thor Elvarsson [aut, cre],
James Begley [aut],
Hoskuldur Bjornsson [aut],
Jamie Lentin [ctb],
Gunnar Stefnasson [ctb],
Lorna Taylor [ctb],
Daniel Howell [ctb],
Sigurdur Hannesson [ctb],
Narfi Stefansson [aut],
Hersir Sigurgeirsson [ctb],
Morten Nygard Asnes [ctb],
Kristin Froysa [ctb],
Audbjorg Jakobsdottir [ctb],
Jon Gudmundsson [ctb],
Gudmundur Einarsson [ctb],
Thordis Linda Thorarinsdottir [ctb],
Kristjana Yr Jonsdottir [ctb],
Mark G. Johnson [ctb, cph],
Bill Goffe [ctb, cph],
Marine and Freshwater Research Institute (Iceland) [cph]
Maintainer: Bjarki Thor Elvarsson <bjarki.elvarsson@hafogvatn.is>
Diff between gadget2 versions 2.3.4 dated 2020-03-13 and 2.3.5 dated 2020-03-17
gadget2-2.3.4/gadget2/src/Makefile |only gadget2-2.3.5/gadget2/DESCRIPTION | 8 ++++---- gadget2-2.3.5/gadget2/MD5 | 10 +++++----- gadget2-2.3.5/gadget2/README.md | 17 +++++++++++++++++ gadget2-2.3.5/gadget2/src/Makevars |only gadget2-2.3.5/gadget2/src/Makevars.win | 4 ++-- gadget2-2.3.5/gadget2/src/include/gadget.h | 2 +- 7 files changed, 29 insertions(+), 12 deletions(-)
Title: Dataframe Difference Tool
Description: Functions for comparing two data.frames against
each other. The core functionality is to provide a detailed breakdown of any differences
between two data.frames as well as providing utility functions to help narrow down the
source of problems and differences.
Author: Craig Gower-Page [cre, aut],
Kieran Martin [aut]
Maintainer: Craig Gower-Page <craig.gower-page@roche.com>
Diff between diffdf versions 1.0.3 dated 2019-03-12 and 1.0.4 dated 2020-03-17
DESCRIPTION | 14 MD5 | 36 - NAMESPACE | 2 NEWS.md | 5 R/ascii_tables.R | 4 R/diffdf.R | 1 R/is_different.R | 4 README.md | 4 build/vignette.rds |binary inst/doc/diffdf-basic.R | 41 - inst/doc/diffdf-basic.Rmd | 17 inst/doc/diffdf-basic.html | 938 +++++++++++++++++++++++++---------------- man/cast_variables.Rd | 9 man/compare_vectors.numeric.Rd | 8 man/diffdf.Rd | 14 man/generate_keyname.Rd | 7 man/identify_differences.Rd | 10 tests/testthat/test-core.R | 2 vignettes/diffdf-basic.Rmd | 17 19 files changed, 672 insertions(+), 461 deletions(-)
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Before using VEIN you need to know the vehicular composition of your study area, in other words,
the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to
start with the function inventory to create a structure of directories and template scripts.
Author: Sergio Ibarra-Espinosa [aut, cre]
(<https://orcid.org/0000-0002-3162-1905>)
Maintainer: Sergio Ibarra-Espinosa <sergio.ibarra@usp.br>
Diff between vein versions 0.8.7 dated 2020-02-18 and 0.8.8 dated 2020-03-17
DESCRIPTION | 16 -- MD5 | 80 ++++++----- NAMESPACE | 7 - NEWS.md | 12 + R/Emissions.R | 50 ++++++- R/GriddedEmissionsArray.R | 65 +++++++-- R/Vehicles.R | 47 ++++++ R/age.R | 2 R/age_hdv.R | 68 ++++++--- R/age_ldv.R | 62 ++++++-- R/age_moto.R | 37 ++++- R/ef_cetesb.R | 223 ++++++++++++++++++++------------ R/ef_ldv_speed.R | 12 + R/ef_local.R |only R/emis_grid.R | 12 + R/emis_merge.R | 8 + R/emis_order.R | 246 +++++++++++++++-------------------- R/emis_order2.R |only R/emis_post.R | 26 +++ R/get_project.R |only R/remove_units.R | 17 +- R/sysdata.rda |binary R/temp_fact.R | 9 + R/vein_notes.R | 298 ++++++++++++++++++++++--------------------- inst/README.Rmd | 2 man/Emissions.Rd | 8 - man/GriddedEmissionsArray.Rd | 14 +- man/Vehicles.Rd | 4 man/age.Rd | 7 + man/age_hdv.Rd | 12 + man/age_ldv.Rd | 12 + man/age_moto.Rd | 12 + man/ef_cetesb.Rd | 32 ++++ man/ef_ldv_speed.Rd | 2 man/ef_local.Rd |only man/emis_merge.Rd | 5 man/emis_order.Rd | 83 +++++++---- man/emis_order2.Rd |only man/emis_post.Rd | 4 man/get_project.Rd |only man/remove_units.Rd | 6 man/temp_fact.Rd | 4 man/vein-package.Rd | 5 man/vein_notes.Rd | 15 +- 44 files changed, 954 insertions(+), 570 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
MongoDB, Inc [cph] (Bundled mongo-c-driver, see AUTHORS file)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between mongolite versions 2.1.0 dated 2019-05-09 and 2.2.0 dated 2020-03-17
DESCRIPTION | 8 MD5 | 629 +++++---- NEWS | 6 R/mongo.R | 3 R/ssl.R | 7 cleanup | 2 configure | 24 man/gridfs.Rd | 8 man/mongo.Rd | 12 man/mongo_options.Rd | 3 man/ssl_options.Rd | 12 src/Makevars.in | 3 src/Makevars.win | 3 src/bson/bcon.c | 4 src/bson/bcon.h | 4 src/bson/bson-atomic.c | 2 src/bson/bson-atomic.h | 8 src/bson/bson-clock.c | 6 src/bson/bson-clock.h | 8 src/bson/bson-compat.h | 8 src/bson/bson-context-private.h | 4 src/bson/bson-context.c | 12 src/bson/bson-context.h | 6 src/bson/bson-decimal128.c | 8 src/bson/bson-decimal128.h | 8 src/bson/bson-endian.h | 8 src/bson/bson-error.c | 12 src/bson/bson-error.h | 8 src/bson/bson-iso8601-private.h | 8 src/bson/bson-iso8601.c | 12 src/bson/bson-iter.c | 10 src/bson/bson-iter.h | 12 src/bson/bson-json.c | 8 src/bson/bson-json.h | 4 src/bson/bson-keys.c | 4 src/bson/bson-keys.h | 6 src/bson/bson-macros.h | 6 src/bson/bson-md5.c | 4 src/bson/bson-md5.h | 4 src/bson/bson-memory.c | 6 src/bson/bson-memory.h | 6 src/bson/bson-oid.c | 8 src/bson/bson-oid.h | 10 src/bson/bson-prelude.h | 1 src/bson/bson-private.h | 16 src/bson/bson-reader.c | 6 src/bson/bson-reader.h | 8 src/bson/bson-string.c | 43 src/bson/bson-string.h | 8 src/bson/bson-timegm-private.h | 6 src/bson/bson-timegm.c | 6 src/bson/bson-types.h | 11 src/bson/bson-utf8.c | 6 src/bson/bson-utf8.h | 6 src/bson/bson-value.c | 8 src/bson/bson-value.h | 6 src/bson/bson-version-functions.c | 4 src/bson/bson-version-functions.h | 4 src/bson/bson-version.h | 8 src/bson/bson-writer.c | 4 src/bson/bson-writer.h | 4 src/bson/bson.c | 23 src/bson/bson.h | 46 src/client.c | 2 src/common/common-b64.c | 10 src/common/common-md5-private.h | 1 src/common/common-prelude.h | 1 src/common/common-thread-private.h | 1 src/jsonsl/jsonsl.c | 22 src/mongoc/mongoc-aggregate-private.h |only src/mongoc/mongoc-aggregate.c |only src/mongoc/mongoc-apm-private.h | 4 src/mongoc/mongoc-apm.c | 36 src/mongoc/mongoc-apm.h | 10 src/mongoc/mongoc-array-private.h | 2 src/mongoc/mongoc-array.c | 2 src/mongoc/mongoc-async-cmd-private.h | 14 src/mongoc/mongoc-async-cmd.c | 24 src/mongoc/mongoc-async-private.h | 4 src/mongoc/mongoc-async.c | 12 src/mongoc/mongoc-buffer-private.h | 4 src/mongoc/mongoc-buffer.c | 6 src/mongoc/mongoc-bulk-operation-private.h | 8 src/mongoc/mongoc-bulk-operation.c | 38 src/mongoc/mongoc-bulk-operation.h | 6 src/mongoc/mongoc-change-stream-private.h | 22 src/mongoc/mongoc-change-stream.c | 212 ++- src/mongoc/mongoc-change-stream.h | 7 src/mongoc/mongoc-client-pool-private.h | 8 src/mongoc/mongoc-client-pool.c | 37 src/mongoc/mongoc-client-pool.h | 18 src/mongoc/mongoc-client-private.h | 62 src/mongoc/mongoc-client-session-private.h | 44 src/mongoc/mongoc-client-session.c | 591 +++++++-- src/mongoc/mongoc-client-session.h | 50 src/mongoc/mongoc-client-side-encryption-private.h |only src/mongoc/mongoc-client-side-encryption.c |only src/mongoc/mongoc-client-side-encryption.h |only src/mongoc/mongoc-client.c | 302 +++- src/mongoc/mongoc-client.h | 39 src/mongoc/mongoc-cluster-cyrus-private.h | 6 src/mongoc/mongoc-cluster-cyrus.c | 12 src/mongoc/mongoc-cluster-private.h | 41 src/mongoc/mongoc-cluster-sasl-private.h | 6 src/mongoc/mongoc-cluster-sasl.c | 20 src/mongoc/mongoc-cluster-sspi-private.h | 6 src/mongoc/mongoc-cluster-sspi.c | 41 src/mongoc/mongoc-cluster.c | 347 +++-- src/mongoc/mongoc-cmd-private.h | 26 src/mongoc/mongoc-cmd.c | 143 +- src/mongoc/mongoc-collection-be47088b.o.tmp |only src/mongoc/mongoc-collection-private.h | 4 src/mongoc/mongoc-collection.c | 328 +---- src/mongoc/mongoc-collection.h | 22 src/mongoc/mongoc-compression-private.h | 5 src/mongoc/mongoc-compression.c | 78 + src/mongoc/mongoc-counters-private.h | 5 src/mongoc/mongoc-counters.c | 4 src/mongoc/mongoc-crypt-private.h |only src/mongoc/mongoc-crypt.c |only src/mongoc/mongoc-crypto-cng-private.h | 4 src/mongoc/mongoc-crypto-cng.c | 10 src/mongoc/mongoc-crypto-common-crypto-private.h | 4 src/mongoc/mongoc-crypto-common-crypto.c | 6 src/mongoc/mongoc-crypto-openssl-private.h | 6 src/mongoc/mongoc-crypto-openssl.c | 6 src/mongoc/mongoc-crypto-private.h | 4 src/mongoc/mongoc-crypto.c | 12 src/mongoc/mongoc-cursor-array.c | 8 src/mongoc/mongoc-cursor-change-stream.c |only src/mongoc/mongoc-cursor-cmd-deprecated.c | 8 src/mongoc/mongoc-cursor-cmd.c | 8 src/mongoc/mongoc-cursor-find-cmd.c | 6 src/mongoc/mongoc-cursor-find-opquery.c | 6 src/mongoc/mongoc-cursor-find.c | 6 src/mongoc/mongoc-cursor-legacy.c | 24 src/mongoc/mongoc-cursor-private.h | 32 src/mongoc/mongoc-cursor.c | 107 + src/mongoc/mongoc-cursor.h | 6 src/mongoc/mongoc-cyrus-private.h | 8 src/mongoc/mongoc-cyrus.c | 10 src/mongoc/mongoc-database-private.h | 10 src/mongoc/mongoc-database.c | 48 src/mongoc/mongoc-database.h | 19 src/mongoc/mongoc-errno-private.h | 2 src/mongoc/mongoc-error-private.h |only src/mongoc/mongoc-error.c | 63 src/mongoc/mongoc-error.h | 13 src/mongoc/mongoc-find-and-modify-private.h | 4 src/mongoc/mongoc-find-and-modify.c | 10 src/mongoc/mongoc-find-and-modify.h | 4 src/mongoc/mongoc-flags.h | 2 src/mongoc/mongoc-gridfs-bucket-file-private.h | 8 src/mongoc/mongoc-gridfs-bucket-file.c | 2 src/mongoc/mongoc-gridfs-bucket-private.h | 4 src/mongoc/mongoc-gridfs-bucket.c | 22 src/mongoc/mongoc-gridfs-bucket.h | 8 src/mongoc/mongoc-gridfs-file-list-private.h | 8 src/mongoc/mongoc-gridfs-file-list.c | 20 src/mongoc/mongoc-gridfs-file-list.h | 6 src/mongoc/mongoc-gridfs-file-page-private.h | 4 src/mongoc/mongoc-gridfs-file-page.c | 6 src/mongoc/mongoc-gridfs-file-page.h | 8 src/mongoc/mongoc-gridfs-file-private.h | 10 src/mongoc/mongoc-gridfs-file.c | 24 src/mongoc/mongoc-gridfs-file.h | 6 src/mongoc/mongoc-gridfs-private.h | 8 src/mongoc/mongoc-gridfs.c | 32 src/mongoc/mongoc-gridfs.h | 12 src/mongoc/mongoc-handshake-compiler-private.h | 6 src/mongoc/mongoc-handshake-os-private.h | 2 src/mongoc/mongoc-handshake-private.h | 7 src/mongoc/mongoc-handshake.c | 102 + src/mongoc/mongoc-handshake.h | 4 src/mongoc/mongoc-host-list-private.h | 20 src/mongoc/mongoc-host-list.c | 124 + src/mongoc/mongoc-host-list.h | 2 src/mongoc/mongoc-index.c | 4 src/mongoc/mongoc-index.h | 4 src/mongoc/mongoc-init.c | 16 src/mongoc/mongoc-init.h | 4 src/mongoc/mongoc-iovec.h | 2 src/mongoc/mongoc-libressl-private.h | 6 src/mongoc/mongoc-libressl.c | 16 src/mongoc/mongoc-linux-distro-scanner-private.h | 4 src/mongoc/mongoc-linux-distro-scanner.c | 16 src/mongoc/mongoc-list-private.h | 2 src/mongoc/mongoc-list.c | 2 src/mongoc/mongoc-log-private.h | 4 src/mongoc/mongoc-log.c | 6 src/mongoc/mongoc-log.h | 4 src/mongoc/mongoc-macros.h | 2 src/mongoc/mongoc-matcher-op-private.h | 2 src/mongoc/mongoc-matcher-op.c | 6 src/mongoc/mongoc-matcher-private.h | 4 src/mongoc/mongoc-matcher.c | 8 src/mongoc/mongoc-matcher.h | 4 src/mongoc/mongoc-memcmp-private.h | 4 src/mongoc/mongoc-memcmp.c | 2 src/mongoc/mongoc-opcode.h | 2 src/mongoc/mongoc-openssl-private.h | 4 src/mongoc/mongoc-openssl.c | 21 src/mongoc/mongoc-opts-helpers-private.h | 30 src/mongoc/mongoc-opts-helpers.c | 40 src/mongoc/mongoc-opts-private.h | 34 src/mongoc/mongoc-opts.c | 216 +++ src/mongoc/mongoc-queue-private.h | 4 src/mongoc/mongoc-queue.c | 2 src/mongoc/mongoc-rand-cng.c | 8 src/mongoc/mongoc-rand-common-crypto.c | 8 src/mongoc/mongoc-rand-openssl.c | 8 src/mongoc/mongoc-rand-private.h | 2 src/mongoc/mongoc-rand.h | 4 src/mongoc/mongoc-read-concern-private.h | 4 src/mongoc/mongoc-read-concern.c | 8 src/mongoc/mongoc-read-concern.h | 4 src/mongoc/mongoc-read-prefs-private.h | 6 src/mongoc/mongoc-read-prefs.c | 6 src/mongoc/mongoc-read-prefs.h | 6 src/mongoc/mongoc-rpc-private.h | 12 src/mongoc/mongoc-rpc.c | 18 src/mongoc/mongoc-sasl-private.h | 10 src/mongoc/mongoc-sasl.c | 10 src/mongoc/mongoc-scram-private.h | 4 src/mongoc/mongoc-scram.c | 16 src/mongoc/mongoc-secure-channel-private.h | 8 src/mongoc/mongoc-secure-channel.c | 18 src/mongoc/mongoc-secure-transport-private.h | 6 src/mongoc/mongoc-secure-transport.c | 16 src/mongoc/mongoc-server-description-private.h | 14 src/mongoc/mongoc-server-description.c | 20 src/mongoc/mongoc-server-description.h | 8 src/mongoc/mongoc-server-stream-private.h | 10 src/mongoc/mongoc-server-stream.c | 6 src/mongoc/mongoc-set-private.h | 2 src/mongoc/mongoc-set.c | 2 src/mongoc/mongoc-socket-private.h | 4 src/mongoc/mongoc-socket.c | 43 src/mongoc/mongoc-socket.h | 12 src/mongoc/mongoc-ssl-private.h | 4 src/mongoc/mongoc-ssl.c | 33 src/mongoc/mongoc-ssl.h | 4 src/mongoc/mongoc-sspi-private.h | 4 src/mongoc/mongoc-sspi.c | 6 src/mongoc/mongoc-stream-buffered.c | 12 src/mongoc/mongoc-stream-buffered.h | 6 src/mongoc/mongoc-stream-file.c | 8 src/mongoc/mongoc-stream-file.h | 6 src/mongoc/mongoc-stream-gridfs-download-private.h | 2 src/mongoc/mongoc-stream-gridfs-upload-private.h | 2 src/mongoc/mongoc-stream-gridfs-upload.c | 10 src/mongoc/mongoc-stream-gridfs.c | 14 src/mongoc/mongoc-stream-gridfs.h | 8 src/mongoc/mongoc-stream-private.h | 6 src/mongoc/mongoc-stream-socket.c | 12 src/mongoc/mongoc-stream-socket.h | 8 src/mongoc/mongoc-stream-tls-libressl-private.h | 2 src/mongoc/mongoc-stream-tls-libressl.c | 26 src/mongoc/mongoc-stream-tls-libressl.h | 4 src/mongoc/mongoc-stream-tls-openssl-bio-private.h | 2 src/mongoc/mongoc-stream-tls-openssl-bio.c | 22 src/mongoc/mongoc-stream-tls-openssl-private.h | 2 src/mongoc/mongoc-stream-tls-openssl.c | 24 src/mongoc/mongoc-stream-tls-openssl.h | 4 src/mongoc/mongoc-stream-tls-private.h | 6 src/mongoc/mongoc-stream-tls-secure-channel-private.h | 2 src/mongoc/mongoc-stream-tls-secure-channel.c | 28 src/mongoc/mongoc-stream-tls-secure-channel.h | 4 src/mongoc/mongoc-stream-tls-secure-transport-private.h | 2 src/mongoc/mongoc-stream-tls-secure-transport.c | 41 src/mongoc/mongoc-stream-tls-secure-transport.h | 4 src/mongoc/mongoc-stream-tls.c | 30 src/mongoc/mongoc-stream-tls.h | 8 src/mongoc/mongoc-stream.c | 24 src/mongoc/mongoc-stream.h | 8 src/mongoc/mongoc-thread-private.h | 6 src/mongoc/mongoc-topology-description-apm-private.h | 4 src/mongoc/mongoc-topology-description-apm.c | 4 src/mongoc/mongoc-topology-description-private.h | 12 src/mongoc/mongoc-topology-description.c | 25 src/mongoc/mongoc-topology-description.h | 6 src/mongoc/mongoc-topology-private.h | 44 src/mongoc/mongoc-topology-scanner-private.h | 15 src/mongoc/mongoc-topology-scanner.c | 33 src/mongoc/mongoc-topology.c | 156 ++ src/mongoc/mongoc-trace-private.h | 6 src/mongoc/mongoc-uri-private.h | 20 src/mongoc/mongoc-uri.c | 1039 +++++++++++----- src/mongoc/mongoc-uri.h | 49 src/mongoc/mongoc-util-private.h | 7 src/mongoc/mongoc-util.c | 59 src/mongoc/mongoc-version-functions.c | 4 src/mongoc/mongoc-version-functions.h | 4 src/mongoc/mongoc-version.h | 8 src/mongoc/mongoc-write-command-legacy-private.h | 6 src/mongoc/mongoc-write-command-legacy.c | 12 src/mongoc/mongoc-write-command-private.h | 38 src/mongoc/mongoc-write-command.c | 207 ++- src/mongoc/mongoc-write-concern-private.h | 4 src/mongoc/mongoc-write-concern.c | 48 src/mongoc/mongoc-write-concern.h | 10 src/mongoc/utlist.h | 2 src/osx/Makevars | 5 src/tests/dependencies.c |only tests/testthat/specifications |only 305 files changed, 5181 insertions(+), 2580 deletions(-)
Title: Enhancements for 'broom' and 'easystats' Package Families
Description: Provides helper functions that assist in data
analysis workflows involving regression analyses. The goal is to
combine the functionality offered by different set of packages
('broom', 'broom.mixed', 'parameters', and 'performance') through a
common syntax to return tidy dataframes containing model parameters and
performance measure summaries. The 'grouped_' variants of the generics
provides a convenient way to execute functions across a combination of
grouping variable(s) in a dataframe.
Author: Indrajeet Patil [aut, cre, ctb]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between broomExtra versions 2.0.0 dated 2020-02-22 and 2.5.0 dated 2020-03-17
DESCRIPTION | 29 - MD5 | 35 - NAMESPACE | 2 NEWS.md | 10 R/easystats_to_tidy_names.R | 6 R/generics.R | 10 R/generics_easystats.R | 47 +- README.md | 655 ++++++++++++++++++++++------------ build/broomExtra.pdf |binary build/vignette.rds |binary inst/WORDLIST | 11 inst/doc/available_methods.html | 258 ++++++------- inst/doc/tests_and_coverage.html | 2 man/figures |only man/glance.Rd | 5 man/glance_performance.Rd | 8 man/tidy.Rd | 5 man/tidy_parameters.Rd | 4 tests/testthat/test-hybrid_generics.R | 20 - 19 files changed, 688 insertions(+), 419 deletions(-)
Title: The Entire Transcript from the Office in Tidy Format
Description: The complete scripts from the American version of
the Office television show in tibble format. Use this package to
analyze and have fun with text from the best series of all time.
Author: Brad Lindblad [aut, cre],
Lucas Graybuck [ctb]
Maintainer: Brad Lindblad <bradley.lindblad@gmail.com>
Diff between schrute versions 0.1.1 dated 2020-01-08 and 0.2.0 dated 2020-03-17
DESCRIPTION | 8 ++-- MD5 | 22 ++++++------- NEWS.md | 3 + R/data-theoffice.R | 5 ++- README.md | 23 ++++++++------ build/vignette.rds |binary data/theoffice.rda |binary inst/CITATION | 2 - inst/doc/theoffice.R | 20 ++++++------ inst/doc/theoffice.html | 78 +++++++++++++++++++++++++++++++----------------- man/schrute.Rd | 1 man/theoffice.Rd | 5 ++- 12 files changed, 101 insertions(+), 66 deletions(-)
Title: An Implementation of Grammar of Graphics for Graphs and Networks
Description: The grammar of graphics as implemented in ggplot2 is a poor fit for
graph and network visualizations due to its reliance on tabular data input.
ggraph is an extension of the ggplot2 API tailored to graph visualizations
and provides the same flexible approach to building up plots layer by layer.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between ggraph versions 2.0.1 dated 2020-02-07 and 2.0.2 dated 2020-03-17
DESCRIPTION | 6 +-- MD5 | 59 +++++++++++++++---------------- NEWS.md | 4 ++ R/facet_graph.R | 3 - R/reshape_add_margins.R |only inst/doc/Edges.html | 32 +++++++--------- inst/doc/Layouts.html | 30 +++++++-------- inst/doc/Nodes.html | 20 ++++------ inst/doc/tidygraph.html | 12 ++---- man/facet_edges.Rd | 9 ++-- man/facet_graph.Rd | 9 ++-- man/facet_nodes.Rd | 9 ++-- man/geom_edge_arc.Rd | 4 +- man/geom_edge_bend.Rd | 4 +- man/geom_edge_diagonal.Rd | 4 +- man/geom_edge_elbow.Rd | 4 +- man/geom_edge_fan.Rd | 4 +- man/geom_edge_hive.Rd | 4 +- man/geom_edge_link.Rd | 4 +- man/geom_edge_loop.Rd | 4 +- man/geom_edge_parallel.Rd | 4 +- man/geom_edge_span.Rd | 4 +- man/geom_node_text.Rd | 7 ++- man/scale_edge_alpha.Rd | 12 +++--- man/scale_edge_colour.Rd | 55 ++++++++++++++--------------- man/scale_edge_fill.Rd | 55 ++++++++++++++--------------- man/scale_edge_linetype.Rd | 47 ++++++++++++------------ man/scale_edge_shape.Rd | 49 +++++++++++++------------ man/scale_edge_size.Rd | 85 +++++++++++++-------------------------------- man/scale_edge_width.Rd | 85 +++++++++++++-------------------------------- man/scale_label_size.Rd | 85 +++++++++++++-------------------------------- 31 files changed, 315 insertions(+), 398 deletions(-)
Title: Generalized Tensor Regression with Covariates on Multiple Modes
Description: Implement the generalized tensor regression in Xu, Hu and Wang (2019) <arXiv:1910.09499>. Solve tensor-response regression given covariates on multiple modes with alternating updating algorithm.
Author: Zhuoyan Xu [aut, cre, cph],
Jiaxin Hu [aut, cph],
Miaoyan Wang [aut, cph]
Maintainer: Zhuoyan Xu <zxu444@stat.wisc.edu>
Diff between tensorregress versions 1.1 dated 2020-02-13 and 2.0 dated 2020-03-17
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Title: Grouped Statistical Analyses in a Tidy Way
Description: Collection of functions to run statistical tests
across all combinations of multiple grouping variables.
Author: Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between groupedstats versions 0.2.0 dated 2020-02-28 and 0.2.1 dated 2020-03-17
groupedstats-0.2.0/groupedstats/build |only groupedstats-0.2.0/groupedstats/inst/doc |only groupedstats-0.2.0/groupedstats/vignettes |only groupedstats-0.2.1/groupedstats/DESCRIPTION | 11 groupedstats-0.2.1/groupedstats/MD5 | 40 - groupedstats-0.2.1/groupedstats/NEWS.md | 6 groupedstats-0.2.1/groupedstats/R/grouped_lmer.R | 9 groupedstats-0.2.1/groupedstats/R/grouped_summary.R | 3 groupedstats-0.2.1/groupedstats/README.md | 207 ++++------ groupedstats-0.2.1/groupedstats/inst/WORDLIST | 3 groupedstats-0.2.1/groupedstats/man/Titanic_full.Rd | 6 groupedstats-0.2.1/groupedstats/man/grouped_lmer.Rd | 9 groupedstats-0.2.1/groupedstats/man/intent_morality.Rd | 6 groupedstats-0.2.1/groupedstats/man/movies_long.Rd | 6 groupedstats-0.2.1/groupedstats/man/movies_wide.Rd | 6 groupedstats-0.2.1/groupedstats/tests/testthat/test-grouped_glm.R | 110 +---- groupedstats-0.2.1/groupedstats/tests/testthat/test-grouped_glmer.R | 56 +- groupedstats-0.2.1/groupedstats/tests/testthat/test-grouped_lm.R | 57 +- groupedstats-0.2.1/groupedstats/tests/testthat/test-grouped_lmer.R |only groupedstats-0.2.1/groupedstats/tests/testthat/test-grouped_p_value.R | 2 groupedstats-0.2.1/groupedstats/tests/testthat/test-grouped_summary.R | 75 ++- groupedstats-0.2.1/groupedstats/tests/testthat/test-lm_effsize_ci.R | 201 ++++----- 22 files changed, 391 insertions(+), 422 deletions(-)
Title: Geographic Information of Uruguay
Description: The toolbox have functions to load and process geographic information for Uruguay.
And extra-function to get address coordinates and orthophotos through the uruguayan 'IDE' API <https://www.gub.uy/infraestructura-datos-espaciales/tramites-y-servicios/servicios/servicio-direcciones-geograficas>.
Author: Richard Detomasi [aut, cre] (<https://orcid.org/0000-0002-6725-0261>),
Ministerio de Desarrollo Social, Uruguay (MIDES) [dtc],
Infraestrutura de Datos Espaciales, Uruguay (IDE) [dtc],
Servicio Geográfico Militar, Uruguay (SGM) [dtc],
Ministerio de Transporte y Obras Públicas, Uruguay (MTOP) [dtc],
Instituto Nacional de Estadística, Uruguay (INE) [dtc],
Instituto Geográfico Militar, Uruguay (IGM) [dtc],
Ministerio de Vivienda, Ordenamiento Territorial y Medio Ambiente,
Uruguay (MVOTMA) [dtc]
Maintainer: Richard Detomasi <richard.detomasi@gmail.com>
Diff between geouy versions 0.1.7 dated 2020-03-04 and 0.1.8 dated 2020-03-17
DESCRIPTION | 21 ++++---- MD5 | 39 ++++++++-------- NAMESPACE | 9 ++- NEWS.md | 20 +++++++- R/load_geouy.R | 27 +++++++++-- R/plot_geouy.R | 7 -- R/tiles_ide_uy.R | 102 ++++++++++++++++++++++++++++++++---------- R/utils.R | 42 +++++++++++++---- R/which_uy.R | 3 - README.md | 85 +++++++++++++++++++++++++++++++++-- data/metadata.rda |binary inst/CITATION |only inst/doc/geouy.html | 4 - man/figures/Thumbs.db |only man/is.uy5382.Rd |only man/load_geouy.Rd | 4 + man/tiles_ide_uy.Rd | 10 ++-- man/which_uy.Rd | 3 - tests/testthat/test-geocode.R | 6 -- tests/testthat/test-load.R | 14 +++-- tests/testthat/test-tiles.R | 31 ++++++++++-- tests/testthat/test-utils.R | 24 ++++++++- 22 files changed, 349 insertions(+), 102 deletions(-)
Title: Tidy Characterizations of Model Performance
Description: Tidy tools for quantifying how well model fits to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE).
Author: Max Kuhn [aut],
Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between yardstick versions 0.0.5 dated 2020-01-23 and 0.0.6 dated 2020-03-17
yardstick-0.0.5/yardstick/tests/testthat/helper-data.rds |only yardstick-0.0.6/yardstick/DESCRIPTION | 6 yardstick-0.0.6/yardstick/MD5 | 54 yardstick-0.0.6/yardstick/NAMESPACE | 11 yardstick-0.0.6/yardstick/NEWS.md | 8 yardstick-0.0.6/yardstick/R/class-sens.R | 9 yardstick-0.0.6/yardstick/R/class-spec.R | 9 yardstick-0.0.6/yardstick/R/metrics.R | 32 yardstick-0.0.6/yardstick/R/prob-roc_auc.R | 29 yardstick-0.0.6/yardstick/R/prob-roc_aunp.R |only yardstick-0.0.6/yardstick/R/prob-roc_aunu.R |only yardstick-0.0.6/yardstick/README.md | 6 yardstick-0.0.6/yardstick/inst/doc/custom-metrics.html | 743 +++++----- yardstick-0.0.6/yardstick/inst/doc/metric-types.html | 229 +-- yardstick-0.0.6/yardstick/inst/doc/multiclass.html | 28 yardstick-0.0.6/yardstick/man/average_precision.Rd | 4 yardstick-0.0.6/yardstick/man/gain_capture.Rd | 4 yardstick-0.0.6/yardstick/man/mn_log_loss.Rd | 4 yardstick-0.0.6/yardstick/man/pr_auc.Rd | 4 yardstick-0.0.6/yardstick/man/roc_auc.Rd | 4 yardstick-0.0.6/yardstick/man/roc_aunp.Rd |only yardstick-0.0.6/yardstick/man/roc_aunu.Rd |only yardstick-0.0.6/yardstick/man/sens.Rd | 6 yardstick-0.0.6/yardstick/man/spec.Rd | 6 yardstick-0.0.6/yardstick/tests/testthat/data |only yardstick-0.0.6/yardstick/tests/testthat/helper-data.R | 42 yardstick-0.0.6/yardstick/tests/testthat/test-print-metric_set.txt |only yardstick-0.0.6/yardstick/tests/testthat/test-prob-mn_log_loss.R | 2 yardstick-0.0.6/yardstick/tests/testthat/test-prob-roc.R | 75 + yardstick-0.0.6/yardstick/tests/testthat/test-prob-roc_aunp.R |only yardstick-0.0.6/yardstick/tests/testthat/test-prob-roc_aunu.R |only yardstick-0.0.6/yardstick/tests/testthat/test_metrics.R | 7 32 files changed, 807 insertions(+), 515 deletions(-)
Title: R Templates for Reproducible Data Analyses
Description: A collection of R Markdown templates for nicely structured, reproducible
data analyses in R. The templates have embedded examples on how to write
citations, footnotes, equations and use colored message/info boxes, how to
cross-reference different parts/sections in the report, provide a nice
table of contents (toc) with a References section and proper R session
information as well as examples using DT tables and ggplot2 graphs.
The bookdown Lite template theme supports code folding.
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between rtemps versions 0.3.0 dated 2020-03-08 and 0.4.0 dated 2020-03-17
DESCRIPTION | 11 +- MD5 | 26 +++-- NEWS.md | 4 R/create_temp.R | 7 + README.md | 11 +- inst/rmarkdown/templates/bookdown_lite/skeleton/img |only inst/rmarkdown/templates/bookdown_lite/skeleton/skeleton.Rmd | 33 +++++- inst/rmarkdown/templates/bookdown_lite/skeleton/style.css | 29 ++++++ inst/rmarkdown/templates/united_html/skeleton/img |only inst/rmarkdown/templates/united_html/skeleton/skeleton.Rmd | 53 ++++++++--- inst/rmarkdown/templates/united_html/skeleton/style.css | 33 ++++++ 11 files changed, 171 insertions(+), 36 deletions(-)
Title: Kolmogorov-Zurbenko Adaptive Filters
Description: Time Series Analysis including break detection, spectral analysis, KZ Fourier Transforms.
Author: Brian Close <brian.close@gmail.com>, Igor Zurbenko <IZurbenko@albany.edu> and Mingzeng Sun <msun@albany.edu>
Maintainer: Brian Close <brian.close@gmail.com>
Diff between kza versions 4.1.0 dated 2018-10-28 and 4.1.0.1 dated 2020-03-17
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/init.c | 16 ++++++++-------- 3 files changed, 13 insertions(+), 13 deletions(-)
Title: Time Series and Econometric Modeling
Description: Time series analysis, (dis)aggregation and manipulation, e.g. time series extension, merge, projection, lag, lead, delta, moving and cumulative average and product, selection by index, date and year-period, conversion to daily, monthly, quarterly, (semi)annually. Simultaneous equation models definition, estimation, simulation and forecasting with coefficient restrictions, error autocorrelation, exogenization, add-factors, impact and interim multipliers analysis, conditional equation evaluation, endogenous targeting and model renormalization.
Author: Andrea Luciani [aut, cre],
Roberto Stok [aut],
Bank of Italy [cph]
Maintainer: Andrea Luciani <andrea.luciani@bancaditalia.it>
Diff between bimets versions 1.4.2 dated 2019-10-19 and 1.4.3 dated 2020-03-17
DESCRIPTION | 8 MD5 | 94 NEWS.md | 94 R/bimets_model_functions.R |12941 ++++++++++++++++---------------- R/bimets_ts_functions.R | 2 README.md | 28 build/vignette.rds |binary data/bimets_12F_YP2D__.RData |binary data/bimets_12L_YP2D__.RData |binary data/bimets_12_D2YP__.RData |binary data/bimets_1F_YP2D__.RData |binary data/bimets_1L_YP2D__.RData |binary data/bimets_1_D2YP__.RData |binary data/bimets_24F_YP2D__.RData |binary data/bimets_24L_YP2D__.RData |binary data/bimets_24_D2YP__.RData |binary data/bimets_2F_YP2D__.RData |binary data/bimets_2L_YP2D__.RData |binary data/bimets_2_D2YP__.RData |binary data/bimets_366_D2YP__.RData |binary data/bimets_366_YP2D__.RData |binary data/bimets_36F_YP2D__.RData |binary data/bimets_36L_YP2D__.RData |binary data/bimets_36_D2YP__.RData |binary data/bimets_3F_YP2D__.RData |binary data/bimets_3L_YP2D__.RData |binary data/bimets_3_D2YP__.RData |binary data/bimets_4F_YP2D__.RData |binary data/bimets_4L_YP2D__.RData |binary data/bimets_4_D2YP__.RData |binary data/bimets_53F_YP2D__.RData |binary data/bimets_53L_YP2D__.RData |binary data/bimets_53_D2YP__.RData |binary data/bimets_static_G90__.RData |only data/bimets_static_TD90__.RData |binary data/bimets_static_startYear___.RData |binary data/bimets_static_totalLength___.RData |binary inst/Licence.pdf |only inst/doc/bimets.R | 990 +- inst/doc/bimets.Rnw | 44 inst/doc/bimets.pdf |binary man/ESTIMATE.Rd | 256 man/LOAD_MODEL.Rd | 14 man/LOAD_MODEL_DATA.Rd | 2 man/MDL.Rd | 2 man/SIMULATE.Rd | 3 man/bimets-package.Rd | 134 man/bimetsDataset.Rd | 7 vignettes/bimets.Rnw | 44 49 files changed, 7719 insertions(+), 6944 deletions(-)
Title: Multi Environment Trials Analysis
Description: Performs stability analysis of multi-environment
trial data using parametric and non-parametric methods. Parametric
methods includes Additive Main Effects and Multiplicative Interaction
(AMMI) analysis by Gauch (2013) <doi:10.2135/cropsci2013.04.0241>,
Genotype plus Genotype-Environment (GGE) biplot analysis by Yan & Kang
(2003) <doi:10.1201/9781420040371>, joint Regression Analysis by
Eberhart & Russel (1966)
(<doi:10.2135/cropsci1966.0011183X000600010011x>), ecovalence by
Wricke (1965), genotypic confidence index by Annicchiarico (1992),
Murakami & Cruz's (2004) method <doi:10.12702/1984-7033.v04n01a02>,
stability variance by Shukla (1972) <doi:10.1038/hdy.1972.87>,
weighted average of absolute scores by Olivoto et al. (2019a)
<doi:10.2134/agronj2019.03.0220>, and multi-trait stability index by
Olivoto et al. (2019b) <doi:10.2134/agronj2019.03.0221>.
Non-parametric methods includes superiority index by Lin & Binns
(1988) <doi:10.4141/cjps88-018>, nonparametric measures of phenotypic
stability by Huehn (1990)
<https://link.springer.com/article/10.1007/BF00024241>, TOP third
statistic by Fox et al. (1990) <doi:10.1007/BF00040364>, geometric
adaptability index described by Shahbazi (2019)
<doi:10.1016/j.scienta.2019.04.047>. Functions for computing
biometrical analysis such as path analysis, canonical correlation,
partial correlation, clustering analysis, and tools for inspecting,
manipulating, summarizing and plotting typical multi-environment
trial data are also provided.
Author: Tiago Olivoto [aut, cre, cph] (<https://orcid.org/0000-0002-0241-9636>)
Maintainer: Tiago Olivoto <tiagoolivoto@gmail.com>
Diff between metan versions 1.3.0 dated 2020-02-11 and 1.4.0 dated 2020-03-17
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metan-1.4.0/metan/R/Annicchiarico.R |only metan-1.4.0/metan/R/FAI_BLUP.R | 38 + metan-1.4.0/metan/R/Fox.R | 59 +- metan-1.4.0/metan/R/Huehn.R | 102 +++- metan-1.4.0/metan/R/Schmildt.R | 44 +- metan-1.4.0/metan/R/Shukla.R | 69 +-- metan-1.4.0/metan/R/Thennarasu.R | 100 +++- metan-1.4.0/metan/R/anova_ind.R | 43 +- metan-1.4.0/metan/R/anova_joint.R | 24 - metan-1.4.0/metan/R/can_cor.R | 12 metan-1.4.0/metan/R/clustering.R | 10 metan-1.4.0/metan/R/colindiag.R | 23 - metan-1.4.0/metan/R/corr_ci.R | 8 metan-1.4.0/metan/R/corr_coef.R | 12 metan-1.4.0/metan/R/corr_plot.R | 8 metan-1.4.0/metan/R/cv_ammi.R | 4 metan-1.4.0/metan/R/desc_stat.R | 21 metan-1.4.0/metan/R/ecovalence.R | 35 - metan-1.4.0/metan/R/env_dissimilarity.R | 6 metan-1.4.0/metan/R/find_outliers.R | 11 metan-1.4.0/metan/R/gafem.R | 25 - metan-1.4.0/metan/R/gai.R | 40 + metan-1.4.0/metan/R/gamem.R | 19 metan-1.4.0/metan/R/gamem_met.R |only metan-1.4.0/metan/R/ge_details.R | 28 - metan-1.4.0/metan/R/ge_effects.R | 77 +-- metan-1.4.0/metan/R/ge_factanal.R | 44 -- metan-1.4.0/metan/R/ge_means.R | 12 metan-1.4.0/metan/R/ge_plot.R | 10 metan-1.4.0/metan/R/ge_reg.R | 35 - metan-1.4.0/metan/R/ge_stats.R | 48 +- metan-1.4.0/metan/R/ge_winners.R | 42 + metan-1.4.0/metan/R/get_model_data.R | 22 - metan-1.4.0/metan/R/gge.R | 54 +- metan-1.4.0/metan/R/gtb.R |only metan-1.4.0/metan/R/imput_miss_val.R |only metan-1.4.0/metan/R/lpcorr.R | 94 +++- metan-1.4.0/metan/R/make_long.R | 4 metan-1.4.0/metan/R/make_mat.R | 8 metan-1.4.0/metan/R/mtsi.R |only metan-1.4.0/metan/R/non_collinear_vars.R |only metan-1.4.0/metan/R/path_coeff.R | 104 ++-- metan-1.4.0/metan/R/performs_ammi.R | 124 +++-- metan-1.4.0/metan/R/plot_ci.R | 2 metan-1.4.0/metan/R/plot_factbars.R | 2 metan-1.4.0/metan/R/plot_scores.R | 11 metan-1.4.0/metan/R/resende_indexes.R | 4 metan-1.4.0/metan/R/residual_plots.R | 4 metan-1.4.0/metan/R/resp_surf.R | 59 +- metan-1.4.0/metan/R/split_factors.R | 7 metan-1.4.0/metan/R/superiority.R | 76 +-- metan-1.4.0/metan/R/tukey_hsd.R | 2 metan-1.4.0/metan/R/utilities.R | 190 +++++++-- metan-1.4.0/metan/R/utils_na.R |only metan-1.4.0/metan/R/waas.R | 26 - metan-1.4.0/metan/R/waas_means.R | 52 +- metan-1.4.0/metan/R/waasb.R |only metan-1.4.0/metan/R/wsmp.R | 24 - metan-1.4.0/metan/R/zzz.R | 18 metan-1.4.0/metan/data/data_alpha.rda |binary metan-1.4.0/metan/inst/CITATION | 19 metan-1.4.0/metan/inst/doc/metan_start.R | 12 metan-1.4.0/metan/inst/doc/metan_start.Rmd | 46 +- metan-1.4.0/metan/inst/doc/metan_start.html | 122 ++--- metan-1.4.0/metan/man/AMMI_indexes.Rd | 1 metan-1.4.0/metan/man/Annicchiarico.Rd | 2 metan-1.4.0/metan/man/Fox.Rd | 14 metan-1.4.0/metan/man/Huehn.Rd | 10 metan-1.4.0/metan/man/Thennarasu.Rd | 10 metan-1.4.0/metan/man/anova_ind.Rd | 5 metan-1.4.0/metan/man/can_corr.Rd | 3 metan-1.4.0/metan/man/clustering.Rd | 3 metan-1.4.0/metan/man/colindiag.Rd | 4 metan-1.4.0/metan/man/data_alpha.Rd | 6 metan-1.4.0/metan/man/data_g.Rd | 6 metan-1.4.0/metan/man/data_ge.Rd | 6 metan-1.4.0/metan/man/data_ge2.Rd | 6 metan-1.4.0/metan/man/desc_stat.Rd | 11 metan-1.4.0/metan/man/figures/README-AMMI-1.png |binary metan-1.4.0/metan/man/figures/README-GGE-1.png |binary metan-1.4.0/metan/man/figures/README-INSPECT-1.png |only metan-1.4.0/metan/man/figures/metan_cheat_sheet.png |only metan-1.4.0/metan/man/find_outliers.Rd | 4 metan-1.4.0/metan/man/gamem_met.Rd |only metan-1.4.0/metan/man/ge_effects.Rd | 19 metan-1.4.0/metan/man/ge_stats.Rd | 2 metan-1.4.0/metan/man/get_model_data.Rd | 15 metan-1.4.0/metan/man/gge.Rd | 14 metan-1.4.0/metan/man/gtb.Rd |only metan-1.4.0/metan/man/impute_missing_val.Rd |only metan-1.4.0/metan/man/is_balanced_trial.Rd |only metan-1.4.0/metan/man/lpcor.Rd | 12 metan-1.4.0/metan/man/make_mat.Rd | 6 metan-1.4.0/metan/man/mtsi.Rd | 2 metan-1.4.0/metan/man/non_collinear_vars.Rd |only metan-1.4.0/metan/man/path_coeff.Rd | 17 metan-1.4.0/metan/man/performs_ammi.Rd | 27 - metan-1.4.0/metan/man/plot.ge_effects.Rd | 2 metan-1.4.0/metan/man/plot.mtsi.Rd | 2 metan-1.4.0/metan/man/plot.resp_surf.Rd | 30 - metan-1.4.0/metan/man/plot.waasb.Rd | 2 metan-1.4.0/metan/man/plot.wsmp.Rd | 34 - metan-1.4.0/metan/man/predict.gge.Rd | 2 metan-1.4.0/metan/man/predict.waasb.Rd | 2 metan-1.4.0/metan/man/print.AMMI_indexes.Rd | 6 metan-1.4.0/metan/man/print.Annicchiarico.Rd | 2 metan-1.4.0/metan/man/print.Fox.Rd | 9 metan-1.4.0/metan/man/print.Huehn.Rd |only metan-1.4.0/metan/man/print.Thennarasu.Rd |only metan-1.4.0/metan/man/print.lpcor.Rd |only metan-1.4.0/metan/man/print.mtsi.Rd | 2 metan-1.4.0/metan/man/print.superiority.Rd | 2 metan-1.4.0/metan/man/print.waasb.Rd | 2 metan-1.4.0/metan/man/split_factors.Rd | 6 metan-1.4.0/metan/man/superiority.Rd | 22 - metan-1.4.0/metan/man/utils_class.Rd | 5 metan-1.4.0/metan/man/utils_na.Rd |only metan-1.4.0/metan/man/utils_num_str.Rd | 8 metan-1.4.0/metan/man/utils_rows_cols.Rd | 8 metan-1.4.0/metan/man/utils_stats.Rd | 26 - metan-1.4.0/metan/man/waas_means.Rd | 7 metan-1.4.0/metan/man/waasb.Rd | 10 metan-1.4.0/metan/vignettes/metan_start.Rmd | 46 +- metan-1.4.0/metan/vignettes/metanref.bib | 33 + 145 files changed, 1747 insertions(+), 1175 deletions(-)
Title: Free Brazilian Repository for Open Soil Data
Description: Making the access to the Free Brazilian Repository for Open Soil Data <http://www.ufsm.br/febr/> as easy
as possible.
Author: Alessandro Samuel-Rosa [aut, cre]
(<https://orcid.org/0000-0003-0877-1320>),
Universidade Federal de Santa Maria [fnd],
Universidade Tecnológica Federal do Paraná [fnd]
Maintainer: Alessandro Samuel-Rosa <alessandrosamuelrosa@gmail.com>
Diff between febr versions 1.0.3 dated 2020-01-25 and 1.1.0 dated 2020-03-17
DESCRIPTION | 15 +- MD5 | 69 +++++----- NAMESPACE | 1 NEWS.md | 45 ++++++ R/AAAA.R | 1 R/ZZZZ.R | 4 R/dataset.R | 32 +++- R/febr.R | 17 -- R/febr2spdf.R | 37 +++-- R/febr2xlsx.R | 46 +++---- R/febrHelper.R | 331 +++++++++++++++++++++++++++++++++++++-------------- R/goto.R | 7 - R/header.R | 11 + R/layer.R | 35 ++--- R/metadata.R | 27 ++-- R/observation.R | 36 +++-- R/readGoogleSheet.R |only R/standard.R | 5 R/unit.R | 11 - build/vignette.rds |binary inst/doc/febr.R | 35 ++--- inst/doc/febr.Rmd | 14 -- inst/doc/febr.html | 17 -- man/dataset.Rd | 3 man/febr.Rd | 3 man/febr2spdf.Rd | 20 +-- man/febr2xlsx.Rd | 17 +- man/goto.Rd | 2 man/header.Rd | 6 man/layer.Rd | 4 man/metadata.Rd | 1 man/observation.Rd | 6 man/standard.Rd | 4 man/unit.Rd | 4 vignettes/biblio.bib | 7 - vignettes/febr.Rmd | 14 -- 36 files changed, 557 insertions(+), 330 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-26 0.2.0
2016-05-28 0.1.0
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft Sql Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', 'Microsoft PDW', and 'SQLite'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.6.3 dated 2020-01-13 and 1.6.4 dated 2020-03-17
DESCRIPTION | 9 MD5 | 47 +- NAMESPACE | 3 NEWS.md | 13 R/HelperFunctions.R | 23 + R/RenderSql.R | 2 R/ShinyApps.R | 2 README.md | 2 inst/csv/replacementPatterns.csv | 133 ++++++ inst/doc/UsingSqlRender.R | 36 - inst/doc/UsingSqlRender.Rmd | 6 inst/doc/UsingSqlRender.pdf |binary inst/java/SqlRender.jar |binary inst/shinyApps/SqlDeveloper/ui.R | 2 java/org/ohdsi/sql/BigQueryTranslate.java | 2 java/org/ohdsi/sql/MainClass.java | 2 java/org/ohdsi/sql/SqlRender.java | 2 java/org/ohdsi/sql/SqlSplit.java | 2 java/org/ohdsi/sql/SqlTranslate.java | 2 java/org/ohdsi/sql/StringUtils.java | 7 man/camelCaseToTitleCase.Rd |only man/createRWrapperForSql.Rd | 80 +-- tests/testthat/test-helperFunctions.R | 10 tests/testthat/test-translateSql.R | 624 +++++++++++++++++++++++++++++- vignettes/UsingSqlRender.Rmd | 6 25 files changed, 889 insertions(+), 126 deletions(-)
Title: Modified Versions of Mann Kendall and Spearman's Rho Trend Tests
Description: Power of non-parametric Mann-Kendall test and Spearman’s Rho test is highly influenced by serially correlated data. To address this issue, trend tests may be applied on the modified versions of the time series data by Block Bootstrapping (BBS), Prewhitening (PW) , Trend Free Prewhitening (TFPW), Bias Corrected Prewhitening and Variance Correction Approach by calculating effective sample size.
Mann, H. B. (1945).<doi:10.1017/CBO9781107415324.004>.
Kendall, M. (1975). Multivariate analysis. Charles Griffin&Company Ltd,.
sen, P. K. (1968).<doi:10.2307/2285891>.
Önöz, B., & Bayazit, M. (2012) <doi:10.1002/hyp.8438>.
Hamed, K. H. (2009).<doi:10.1016/j.jhydrol.2009.01.040>.
Yue, S., & Wang, C. Y. (2002) <doi:10.1029/2001WR000861>.
Yue, S., Pilon, P., Phinney, B., & Cavadias, G. (2002) <doi:10.1002/hyp.1095>.
Hamed, K. H., & Ramachandra Rao, A. (1998) <doi:10.1016/S0022-1694(97)00125-X>.
Yue, S., & Wang, C. Y. (2004) <doi:10.1023/B:WARM.0000043140.61082.60>.
Author: Sandeep Kumar Patakamuri [aut, cre],
Nicole O'Brien [aut, ctb]
Maintainer: Sandeep Kumar Patakamuri <sandeep.patakamuri@gmail.com>
Diff between modifiedmk versions 1.4.0 dated 2019-06-14 and 1.5.0 dated 2020-03-17
modifiedmk-1.4.0/modifiedmk/build |only modifiedmk-1.4.0/modifiedmk/inst |only modifiedmk-1.4.0/modifiedmk/vignettes |only modifiedmk-1.5.0/modifiedmk/DESCRIPTION | 9 +- modifiedmk-1.5.0/modifiedmk/MD5 | 16 +--- modifiedmk-1.5.0/modifiedmk/R/bbsmk.R | 116 +++++++++++------------------ modifiedmk-1.5.0/modifiedmk/R/bbssr.R | 96 +++++++++--------------- modifiedmk-1.5.0/modifiedmk/R/bcpw.R | 18 ++-- modifiedmk-1.5.0/modifiedmk/R/pbmk.R | 79 +++++++++----------- modifiedmk-1.5.0/modifiedmk/man/bbsmk.Rd | 120 +++++++++++++++---------------- 10 files changed, 197 insertions(+), 257 deletions(-)
Title: Extra Recipes for Encoding Categorical Predictors
Description: Predictors can be converted to one or more numeric representations using simple generalized linear models <arXiv:1611.09477> or nonlinear models <arXiv:1604.06737>. All encoding methods are supervised.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between embed versions 0.0.5 dated 2020-01-07 and 0.0.6 dated 2020-03-17
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/bayes.R | 2 +- R/glm.R | 2 +- R/lme.R | 10 ++++++---- R/tf.R | 18 +++++++++++------- R/umap.R | 2 +- R/woe.R | 27 +++++++++++++++------------ tests/testthat/make_example_data.R | 6 ++++-- tests/testthat/test_woe.R | 3 ++- 11 files changed, 58 insertions(+), 42 deletions(-)
Title: Modeling Workflows
Description: Managing both a 'parsnip' model and a preprocessor, such as a
model formula or recipe from 'recipes', can often be challenging. The goal
of 'workflows' is to streamline this process by bundling the model alongside
the preprocessor, all within the same object.
Author: Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between workflows versions 0.1.0 dated 2019-12-30 and 0.1.1 dated 2020-03-17
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 5 +++++ README.md | 4 ++-- inst/doc/stages.html | 18 +++++++++++++++--- 5 files changed, 31 insertions(+), 14 deletions(-)
Title: Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Description: Designed to be compatible with the R package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this 'Python' 'Boto3' Software Development Kit ('SDK')
<https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between RAthena versions 1.7.1 dated 2020-02-16 and 1.8.0 dated 2020-03-17
DESCRIPTION | 9 +- MD5 | 87 ++++++++++++++++----------- NAMESPACE | 1 NEWS.md | 60 +++++++++++++++++- R/Connection.R | 19 ++++- R/Driver.R | 9 ++ R/Options.R | 20 +++++- R/RAthena.R | 2 R/Result.R | 22 ++++-- R/View.R | 18 ++++- R/install.R | 7 +- R/table.R | 60 ++++++++++++------ R/util.R | 19 +++++ README.md | 1 build |only inst/doc |only man/AthenaConnection.Rd | 10 +++ man/AthenaWriteTables.Rd | 18 +++-- man/RAthena_options.Rd | 15 +++- man/dbConnect-AthenaDriver-method.Rd | 3 man/install_boto.Rd | 4 - man/sqlCreateTable.Rd | 12 ++- man/sqlData.Rd | 4 - tests/testthat/helper.R | 63 ++++++++++++++++--- tests/testthat/test-append-data.R |only tests/testthat/test-arn.R | 1 tests/testthat/test-athena-ddl.R | 25 ++++++- tests/testthat/test-athena-request.R | 4 - tests/testthat/test-cache.R |only tests/testthat/test-classes.R | 1 tests/testthat/test-datatransfer-datatable.R | 1 tests/testthat/test-datatransfer-vroom.R | 1 tests/testthat/test-dbDisconnect.R | 1 tests/testthat/test-dplyr-compute.R | 1 tests/testthat/test-dplyr-copy_to.R | 3 tests/testthat/test-dplyr-sql-trans-env.R | 45 +++++++++++++ tests/testthat/test-exist-remove.R | 1 tests/testthat/test-metadata.R | 36 +++++++++-- tests/testthat/test-s3-upload-location.R | 18 ++++- tests/testthat/test-work-groups.R | 9 ++ vignettes |only 41 files changed, 470 insertions(+), 140 deletions(-)
Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws'
<https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between noctua versions 1.5.1 dated 2020-02-16 and 1.6.0 dated 2020-03-17
DESCRIPTION | 9 +- MD5 | 86 ++++++++++++++++----------- NAMESPACE | 1 NEWS.md | 56 +++++++++++++++++ R/Connection.R | 38 +++++++---- R/Driver.R | 11 ++- R/Options.R | 21 +++++- R/Result.R | 24 +++++-- R/Table.R | 59 ++++++++++++------ R/View.R | 25 +++++-- R/athena_low_api.R | 2 R/noctua.R | 2 R/utils.R | 19 +++++ README.md | 3 build |only inst/doc |only man/AthenaWriteTables.Rd | 20 +++--- man/assume_role.Rd | 2 man/dbConnect-AthenaDriver-method.Rd | 3 man/noctua_options.Rd | 15 +++- man/sqlCreateTable.Rd | 12 ++- man/sqlData.Rd | 4 - tests/testthat/helper.R | 69 ++++++++++++++++++--- tests/testthat/test-append-data.R |only tests/testthat/test-arn.R | 7 -- tests/testthat/test-athena-ddl.R | 31 ++++++--- tests/testthat/test-athena-request.R | 17 +++-- tests/testthat/test-caching.R |only tests/testthat/test-classes.R | 7 -- tests/testthat/test-datatransfer-datatable.R | 9 -- tests/testthat/test-datatransfer-vroom.R | 9 -- tests/testthat/test-dbDisconnect.R | 7 -- tests/testthat/test-dplyr-compute.R | 7 -- tests/testthat/test-dplyr-copy_to.R | 9 -- tests/testthat/test-dplyr-sql-trans-env.R | 46 ++++++++++++++ tests/testthat/test-exist-remove.R | 7 -- tests/testthat/test-metadata.R | 45 ++++++++++---- tests/testthat/test-region.R |only tests/testthat/test-s3-upload-location.R | 20 +++++- tests/testthat/test-work-groups.R | 14 ++-- vignettes |only 41 files changed, 490 insertions(+), 226 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.4.9 dated 2020-02-13 and 0.5.0 dated 2020-03-17
DESCRIPTION | 10 MD5 | 138 +- NAMESPACE | 3 R/ANOVA.R | 15 R/ARMA.R | 1 R/Binary_ANOVA.R | 49 R/Boost.R | 24 R/Causation.R | 14 R/Dependence.R | 2 R/Dependence_base.R | 40 R/Internal_Functions.R | 2 R/Multivariate_Regression.R | 69 - R/NNS_Distance.R | 24 R/NNS_VAR.R | 51 R/Partition_Map.R | 25 R/Regression.R | 1113 ++++++++++--------- R/Stack.R | 234 ++- R/dy_d_wrt.R | 15 R/dy_dx.R | 2 R/gvload.R | 4 build/vignette.rds |binary inst/doc/NNSvignette_Classification.Rmd | 2 inst/doc/NNSvignette_Classification.html | 44 inst/doc/NNSvignette_Clustering_and_Regression.R | 4 inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 6 inst/doc/NNSvignette_Clustering_and_Regression.html | 150 +- inst/doc/NNSvignette_Correlation_and_Dependence.html | 45 inst/doc/NNSvignette_Forecasting.html | 37 inst/doc/NNSvignette_Partial_Moments.html | 11 man/Co.LPM.Rd | 81 - man/Co.UPM.Rd | 81 - man/D.LPM.Rd | 80 - man/D.UPM.Rd | 80 - man/LPM.Rd | 66 - man/LPM.VaR.Rd | 70 - man/LPM.ratio.Rd | 102 - man/NNS.ANOVA.Rd | 135 +- man/NNS.ARMA.Rd | 184 +-- man/NNS.ARMA.optim.Rd | 157 +- man/NNS.FSD.Rd | 68 - man/NNS.FSD.uni.Rd | 68 - man/NNS.PDF.Rd | 81 - man/NNS.SD.efficient.set.Rd | 70 - man/NNS.SSD.Rd | 60 - man/NNS.SSD.uni.Rd | 60 - man/NNS.TSD.Rd | 60 - man/NNS.TSD.uni.Rd | 60 - man/NNS.VAR.Rd | 173 +- man/NNS.boost.Rd | 180 +-- man/NNS.caus.Rd | 94 - man/NNS.cor.Rd | 96 - man/NNS.dep.Rd | 201 +-- man/NNS.dep.base.Rd | 67 - man/NNS.dep.hd.Rd | 74 - man/NNS.diff.Rd | 74 - man/NNS.distance.Rd | 46 man/NNS.norm.Rd | 74 - man/NNS.part.Rd | 134 +- man/NNS.reg.Rd | 335 +++-- man/NNS.seas.Rd | 80 - man/NNS.stack.Rd | 200 +-- man/NNS.term.matrix.Rd | 90 - man/PM.matrix.Rd | 109 - man/UPM.Rd | 66 - man/UPM.VaR.Rd | 56 man/UPM.ratio.Rd | 80 - man/dy.d_.Rd | 136 +- man/dy.dx.Rd | 104 - vignettes/NNSvignette_Classification.Rmd | 2 vignettes/NNSvignette_Clustering_and_Regression.Rmd | 6 70 files changed, 3245 insertions(+), 2929 deletions(-)
Title: Automated Setup and Auto Run for R Language Server
Description: Allows to install the R 'languageserver' with all dependencies
into a separate library and use that independent installation
automatically when R is instantiated as a language server process.
Useful for making language server seamless to use without
running into package version conflicts.
Author: Jozef Hajnala [aut, cre]
Maintainer: Jozef Hajnala <jozef.hajnala@gmail.com>
Diff between languageserversetup versions 0.1.0 dated 2020-03-14 and 0.1.1 dated 2020-03-17
languageserversetup-0.1.0/languageserversetup/inst/check_rhub.R |only languageserversetup-0.1.0/languageserversetup/inst/docker_stage.sh |only languageserversetup-0.1.0/languageserversetup/inst/test_deploy.R |only languageserversetup-0.1.1/languageserversetup/DESCRIPTION | 8 +-- languageserversetup-0.1.1/languageserversetup/MD5 | 21 ++++------ languageserversetup-0.1.1/languageserversetup/R/languageserver_install.R | 19 ++++++--- languageserversetup-0.1.1/languageserversetup/R/utils.r | 13 ++++-- languageserversetup-0.1.1/languageserversetup/README.md | 12 ++++- languageserversetup-0.1.1/languageserversetup/inst/tinytest/test_utils.R | 20 +++++++++ languageserversetup-0.1.1/languageserversetup/man/languageserver_add_to_rprofile.Rd | 3 - languageserversetup-0.1.1/languageserversetup/man/languageserver_install.Rd | 18 ++++++-- languageserversetup-0.1.1/languageserversetup/man/languageserver_remove_from_rprofile.Rd | 3 - languageserversetup-0.1.1/languageserversetup/man/languageserver_startup.Rd | 5 +- 13 files changed, 86 insertions(+), 36 deletions(-)
More information about languageserversetup at CRAN
Permanent link
Title: Creates Co-Occurrence Matrices of Spatial Data
Description: Builds co-occurrence matrices based on spatial raster data.
It includes creation of weighted co-occurrence matrices (wecoma) and
integrated co-occurrence matrices
(incoma; Vadivel et al. (2007) <doi:10.1016/j.patrec.2007.01.004>).
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Maximillian H.K. Hesselbarth [ctb] (Co-author of underlying C++ code
for get_class_index_map(), get_unique_values(), and rcpp_get_coma()
functions),
Marco Sciaini [ctb] (Co-author of underlying C++ code for
get_class_index_map(), get_unique_values(), and rcpp_get_coma()
functions),
Sebastian Hanss [ctb] (Co-author of underlying C++ code for
get_class_index_map(), get_unique_values(), and rcpp_get_coma()
functions)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between comat versions 0.7.2 dated 2019-11-12 and 0.8.2 dated 2020-03-17
DESCRIPTION | 8 ++--- MD5 | 60 +++++++++++++++++++-------------------- NEWS.md | 5 +++ R/get_cocoma.R | 12 ++++++- R/get_coma.R | 22 ++++++++++++-- R/get_cove.R | 9 +++-- R/get_incoma.R | 15 +++++++-- R/get_incove.R | 8 ++--- R/get_wecoma.R | 15 ++++++++- README.md | 2 + inst/include/comat_RcppExports.h | 16 +++++----- inst/tinytest/test_get_cocoma.R | 2 - inst/tinytest/test_get_coma.R | 7 +--- inst/tinytest/test_get_incoma.R | 16 +++++----- inst/tinytest/test_get_wecoma.R | 4 +- man/comat-package.Rd | 2 - man/get_cocoma.Rd | 6 +++ man/get_coma.Rd | 13 +++++++- man/get_cove.Rd | 9 +++-- man/get_incoma.Rd | 11 +++++-- man/get_incove.Rd | 11 +++---- man/get_wecoma.Rd | 14 +++++++-- src/RcppExports.cpp | 32 ++++++++++---------- src/get_class_index_map.h | 1 src/rcpp_get_cocoma.cpp | 19 +++--------- src/rcpp_get_coma.cpp | 47 +++++++++++++----------------- src/rcpp_get_coma.h | 4 +- src/rcpp_get_incoma.cpp | 3 - src/rcpp_get_vec.cpp | 31 +++++++++++++++----- src/rcpp_get_wecoma.cpp | 30 +++++++------------ src/rcpp_get_wecoma.h | 12 +++---- 31 files changed, 261 insertions(+), 185 deletions(-)
Title: FROC Analysis by Bayesian Approaches
Description: Execute BayesianFROC::fit_GUI_Shiny() (or fit_GUI_Shiny_MRMC()) for a graphical user interface via Shiny. The free-response receiver operating characteristic (FROC) method is a generalization of receiver operating characteristic (ROC) analysis. However, Chakraborty's classical model is non-generative in the sense that it cannot synthesize data. This package aims to modify his models to be generative using a Bayesian approach, and to verify that our models fit practical datasets. We also develop a Bayesian model for comparing modalities. Chakraborty [1] defined a free-response receiver operating characteristic (FROC) model based on maximum likelihood (ML). However, his model is non-generative in the sense that it cannot generate FROC datasets. In signal detection theory, the number of true positives never exceeds the number of targets. However, this is not explained by any existing model. Thus, in this package, the author contributes to FROC theory by refining Chakraborty’s model to obtain models that are generative. This modification allows us to use FROC analysis in a general statistical scheme, and as a benefit, our generative model can be applied to calculations of posterior predictive p values that require generation of synthetic datasets from fitted models. Furthermore, this package presents new models for comparison of modalities. Modality comparison is a common problem in radiology, and has been studied extensively. However, in many medical studies, such problems are addressed with non-Bayesian methods such as ANOVA. As a supplementary topic, this work presents a Bayesian model that includes individual differences. With this model, we can account for differences between individual readers when comparing modalities, using Bayesian rather than ML-methods. The author found the existing FROC model in [1] to be non-generative for calculation of posterior predictive p values. Replacing the ML-based method with a Bayesian approach differs from standard practice but provides insight into the problems of existing methods. Please execute the following R scripts from the R (R studio) console, demo(demo_MRMC, package = "BayesianFROC"); demo(demo_srsc, package = "BayesianFROC"); demo(demo_stan, package = "BayesianFROC"); demo(demo_drawcurves_srsc, package = "BayesianFROC"); demo_Bayesian_FROC(); demo_Bayesian_FROC_without_pause(). References: [1] Dev Chakraborty (1989) <doi:10.1118/1.596358> Maximum likelihood analysis of free - response receiver operating characteristic (FROC) data. Pre-print: Issei Tsunoda; Generative Models for free-response receiver operating characteristic analysis. See the vignettes for more details.
Author: Issei Tsunoda [aut, cre]
Maintainer: Issei Tsunoda <tsunoda.issei1111@gmail.com>
Diff between BayesianFROC versions 0.2.1 dated 2020-01-19 and 0.2.2 dated 2020-03-17
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BayesianFROC-0.2.2/BayesianFROC/man/replicate_model_MRMC.Rd | 337 - BayesianFROC-0.2.2/BayesianFROC/man/showGM.Rd | 38 BayesianFROC-0.2.2/BayesianFROC/man/show_codes_in_my_manuscript.Rd |only BayesianFROC-0.2.2/BayesianFROC/man/size_of_return_value.Rd | 57 BayesianFROC-0.2.2/BayesianFROC/man/small_margin.Rd | 157 BayesianFROC-0.2.2/BayesianFROC/man/snippet_for_BayesianFROC.Rd | 38 BayesianFROC-0.2.2/BayesianFROC/man/sortAUC.Rd | 126 BayesianFROC-0.2.2/BayesianFROC/man/stanfitExtended.Rd | 264 BayesianFROC-0.2.2/BayesianFROC/man/summarize_MRMC.Rd | 70 BayesianFROC-0.2.2/BayesianFROC/man/summary_AUC_comparison_MRMC.Rd | 43 BayesianFROC-0.2.2/BayesianFROC/man/summary_AUC_comparison_MRMC_with_crayon.Rd | 47 BayesianFROC-0.2.2/BayesianFROC/man/summary_AUC_comparison_MRMC_without_crayon.Rd | 47 BayesianFROC-0.2.2/BayesianFROC/man/summary_EAP_CI_srsc.Rd | 120 BayesianFROC-0.2.2/BayesianFROC/man/the_row_number_of_logical_vector.Rd | 94 BayesianFROC-0.2.2/BayesianFROC/man/v.Rd | 28 BayesianFROC-0.2.2/BayesianFROC/man/v_truth.Rd | 44 BayesianFROC-0.2.2/BayesianFROC/man/v_truth_creator_for_many_readers_MRMC_data.Rd | 52 BayesianFROC-0.2.2/BayesianFROC/man/validation.dataset_srsc.Rd | 587 +- BayesianFROC-0.2.2/BayesianFROC/man/validation.draw_srsc.Rd | 120 BayesianFROC-0.2.2/BayesianFROC/man/viewdata.Rd | 280 BayesianFROC-0.2.2/BayesianFROC/man/viewdata_MRMC.Rd | 88 BayesianFROC-0.2.2/BayesianFROC/man/viewdata_srsc.Rd | 116 BayesianFROC-0.2.2/BayesianFROC/man/waic.Rd | 190 BayesianFROC-0.2.2/BayesianFROC/man/z.Rd | 28 BayesianFROC-0.2.2/BayesianFROC/man/z_from_dz.Rd | 108 BayesianFROC-0.2.2/BayesianFROC/man/z_truth.Rd | 44 BayesianFROC-0.2.2/BayesianFROC/vignettes/mystyle.css |only 252 files changed, 24822 insertions(+), 21845 deletions(-)
Title: Partition/Decomposition of Breeding Values by Paths of
Information
Description: A software that implements a method for partitioning genetic trends to
quantify the sources of genetic gain in breeding programmes.
The partitioning method is described in Garcia-Cortes et al.
(2008) <doi:10.1017/S175173110800205X>. The package includes the
main function AlphaPart for partitioning breeding values and auxiliary
functions for manipulating data and summarizing, visualizing, and saving
results.
Author: Gregor Gorjanc, Jana Obsteter
Maintainer: Gregor Gorjanc <gregor.gorjanc@roslin.ed.ac.uk>
Diff between AlphaPart versions 0.7.0 dated 2019-06-27 and 0.8.0 dated 2020-03-17
AlphaPart-0.7.0/AlphaPart/inst/doc/alphaPart-vignette.R |only AlphaPart-0.7.0/AlphaPart/inst/doc/alphaPart-vignette.Rmd |only AlphaPart-0.7.0/AlphaPart/inst/doc/alphaPart-vignette.html |only AlphaPart-0.7.0/AlphaPart/vignettes/alphaPart-vignette.Rmd |only AlphaPart-0.8.0/AlphaPart/DESCRIPTION | 24 - AlphaPart-0.8.0/AlphaPart/MD5 | 86 ++-- AlphaPart-0.8.0/AlphaPart/R/AlphaPart.R | 34 + AlphaPart-0.8.0/AlphaPart/R/AlphaPartSum.R | 16 AlphaPart-0.8.0/AlphaPart/R/data.R | 23 - AlphaPart-0.8.0/AlphaPart/R/plot.summaryAlphaPart.R | 173 ++++------ AlphaPart-0.8.0/AlphaPart/R/print.AlphaPart.R | 4 AlphaPart-0.8.0/AlphaPart/R/print.plotSummaryAlphaPart.R | 17 AlphaPart-0.8.0/AlphaPart/R/print.summaryAlphaPart.R | 8 AlphaPart-0.8.0/AlphaPart/R/savePlot.plotSummaryAlphaPart.R | 14 AlphaPart-0.8.0/AlphaPart/R/summary.AlphaPart.R | 27 - AlphaPart-0.8.0/AlphaPart/R/write.csv.R | 26 - AlphaPart-0.8.0/AlphaPart/build/vignette.rds |binary AlphaPart-0.8.0/AlphaPart/data/AlphaPart.ped.rda |binary AlphaPart-0.8.0/AlphaPart/inst/doc/alphapart-vignette.R |only AlphaPart-0.8.0/AlphaPart/inst/doc/alphapart-vignette.Rmd |only AlphaPart-0.8.0/AlphaPart/inst/doc/alphapart-vignette.html |only AlphaPart-0.8.0/AlphaPart/inst/examples/examples_AlphaPart.R | 2 AlphaPart-0.8.0/AlphaPart/inst/examples/examples_AlphaPartSubset.R | 2 AlphaPart-0.8.0/AlphaPart/inst/examples/examples_AlphaPartSum.R | 2 AlphaPart-0.8.0/AlphaPart/inst/examples/examples_plotSummaryAlphaPart.R | 25 - AlphaPart-0.8.0/AlphaPart/inst/examples/examples_print.plotSummaryAlphaPart.R | 13 AlphaPart-0.8.0/AlphaPart/inst/examples/examples_savePlot.plotsummaryAlphaPart.R | 26 - AlphaPart-0.8.0/AlphaPart/inst/examples/examples_summary.AlphaPart.R | 31 - AlphaPart-0.8.0/AlphaPart/inst/examples/examples_write.csv.R | 5 AlphaPart-0.8.0/AlphaPart/man/AlphaPart.Rd | 37 +- AlphaPart-0.8.0/AlphaPart/man/AlphaPart.ped.Rd | 23 - AlphaPart-0.8.0/AlphaPart/man/AlphaPartSubset.Rd | 2 AlphaPart-0.8.0/AlphaPart/man/AlphaPartSum.Rd | 11 AlphaPart-0.8.0/AlphaPart/man/pedFixBirthYear.Rd | 16 AlphaPart-0.8.0/AlphaPart/man/pedSetBase.Rd | 11 AlphaPart-0.8.0/AlphaPart/man/plot.summaryAlphaPart.Rd | 60 +-- AlphaPart-0.8.0/AlphaPart/man/print.AlphaPart.Rd | 4 AlphaPart-0.8.0/AlphaPart/man/print.plotSummaryAlphaPart.Rd | 13 AlphaPart-0.8.0/AlphaPart/man/print.summaryAlphaPart.Rd | 31 - AlphaPart-0.8.0/AlphaPart/man/savePlot.Rd | 58 +-- AlphaPart-0.8.0/AlphaPart/man/summary.AlphaPart.Rd | 61 +-- AlphaPart-0.8.0/AlphaPart/man/write.csv.Rd | 23 - AlphaPart-0.8.0/AlphaPart/tests/testthat/test-alphapart.R | 18 - AlphaPart-0.8.0/AlphaPart/tests/testthat/test-alphapartitionsum.R | 21 - AlphaPart-0.8.0/AlphaPart/tests/testthat/test-alphapartsubset.R | 2 AlphaPart-0.8.0/AlphaPart/tests/testthat/test-summary-alphapart.R | 82 +--- AlphaPart-0.8.0/AlphaPart/tests/testthat/test-write-csv.R | 22 - AlphaPart-0.8.0/AlphaPart/vignettes/alphapart-vignette.Rmd |only 48 files changed, 476 insertions(+), 577 deletions(-)
Title: Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Description: Standard and extensible Eddy-Covariance data post-processing
(Wutzler et al. (2018) <doi:10.5194/bg-15-5015-2018>)
includes
uStar-filtering, gap-filling, and flux-partitioning.
The Eddy-Covariance (EC) micrometeorological technique quantifies continuous
exchange fluxes of gases, energy, and momentum between an ecosystem and the atmosphere.
It is important for understanding ecosystem dynamics and upscaling exchange fluxes.
(Aubinet et al. (2012) <doi:10.1007/978-94-007-2351-1>).
This package inputs pre-processed (half-)hourly data and supports further processing.
First, a quality-check and filtering is performed based on the relationship between
measured flux and friction
velocity (uStar) to discard biased data
(Papale et al. (2006) <doi:10.5194/bg-3-571-2006>).
Second, gaps in the data are filled based on information from environmental conditions
(Reichstein et al. (2005) <doi:10.1111/j.1365-2486.2005.001002.x>).
Third, the net flux of carbon dioxide is partitioned
into its gross fluxes in and out of the ecosystem by night-time
based and day-time based approaches
(Lasslop et al. (2010) <doi:10.1111/j.1365-2486.2009.02041.x>).
Author: Department for Biogeochemical Integration at MPI-BGC, Jena, Germany
[cph],
Thomas Wutzler [aut, cre],
Markus Reichstein [aut],
Antje Maria Moffat [aut, trl],
Olaf Menzer [ctb],
Mirco Migliavacca [aut],
Kerstin Sickel [ctb, trl],
Ladislav Šigut [ctb]
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>
Diff between REddyProc versions 1.2 dated 2019-03-30 and 1.2.1 dated 2020-03-17
DESCRIPTION | 6 MD5 | 232 +- NEWS.md | 5 R/DataFunctions.R | 47 R/EddyGapfilling.R | 2 build/vignette.rds |binary inst/doc/DEGebExample.R | 218 +- inst/doc/DEGebExample.html | 884 +++++----- inst/doc/aggUncertainty.html | 656 ++++--- inst/doc/bigleaf.html | 586 ++++-- inst/doc/gapFilling.R | 194 +- inst/doc/gapFilling.html | 601 +++--- inst/doc/uStarCases.R | 200 +- inst/doc/uStarCases.html | 866 ++++----- inst/doc/useCase.html | 687 +++++-- man/BerkeleyJulianDateToPOSIXct.Rd | 46 man/LightResponseCurveFitter_computeCost.Rd | 62 man/LightResponseCurveFitter_computeLRCGradient.Rd | 64 man/LightResponseCurveFitter_fitLRC.Rd | 156 - man/LightResponseCurveFitter_getOptimizedParameterPositions.Rd | 44 man/LightResponseCurveFitter_getParameterInitials.Rd | 34 man/LightResponseCurveFitter_getParameterNames.Rd | 44 man/LightResponseCurveFitter_getPriorLocation.Rd | 42 man/LightResponseCurveFitter_getPriorScale.Rd | 62 man/LightResponseCurveFitter_isParameterInBounds.Rd | 48 man/LightResponseCurveFitter_optimLRC.Rd | 58 man/LightResponseCurveFitter_optimLRCBounds.Rd | 80 man/LightResponseCurveFitter_optimLRCOnAdjustedPrior.Rd | 84 man/LightResponseCurveFitter_predictGPP.Rd | 50 man/LightResponseCurveFitter_predictLRC.Rd | 72 man/LogisticSigmoidLRCFitter_predictGPP.Rd | 46 man/NonrectangularLRCFitter_getParameterNames.Rd | 40 man/NonrectangularLRCFitter_predictGPP.Rd | 58 man/POSIXctToBerkeleyJulianDate.Rd | 38 man/RectangularLRCFitter_predictGPP.Rd | 46 man/fCalcAVPfromVMFandPress.Rd | 44 man/fCalcETfromLE.Rd | 44 man/fCalcExtRadiation.Rd | 42 man/fCalcPotRadiation.Rd | 90 - man/fCalcRHfromAVPandTair.Rd | 44 man/fCalcSVPfromTair.Rd | 38 man/fCalcVPDfromRHandTair.Rd | 44 man/fCheckHHTimeSeries.Rd | 82 man/fConvertCtoK.Rd | 38 man/fConvertGlobalToVisible.Rd | 40 man/fConvertKtoC.Rd | 38 man/fConvertTimeToPosix.Rd | 130 - man/fConvertVisibleWm2toPhotons.Rd | 38 man/fLloydTaylor.Rd | 80 man/fLoadEuroFlux16.Rd | 50 man/fLoadTXTIntoDataframe.Rd | 62 man/fWriteDataframeToFile.Rd | 62 man/filterLongRuns.Rd | 48 man/filterLongRunsInVector.Rd | 44 man/getAmerifluxToBGC05VariableNameMapping.Rd | 60 man/getBGC05ToAmerifluxVariableNameMapping.Rd | 62 man/getExamplePath.Rd | 66 man/getFilledExampleDETha98Data.Rd | 36 man/getREddyProcExampleDir.Rd | 60 man/getTZone.Rd | 48 man/partGLControl.Rd | 234 +- man/partGLControlLasslopCompatible.Rd | 138 - man/partGLExtractStandardData.Rd | 204 +- man/partitionNEEGL.Rd | 216 +- man/renameVariablesInDataframe.Rd | 44 man/sEddyProc.Rd | 36 man/sEddyProc_initialize.Rd | 172 - man/sEddyProc_sApplyUStarScen.Rd | 36 man/sEddyProc_sCalcPotRadiation.Rd | 40 man/sEddyProc_sEstUstarThold.Rd | 58 man/sEddyProc_sEstUstarThreshold.Rd | 58 man/sEddyProc_sEstUstarThresholdDistribution.Rd | 46 man/sEddyProc_sEstimateUstarScenarios.Rd | 124 - man/sEddyProc_sExportData.Rd | 30 man/sEddyProc_sExportResults.Rd | 40 man/sEddyProc_sFillInit.Rd | 82 man/sEddyProc_sFillLUT.Rd | 82 man/sEddyProc_sFillMDC.Rd | 50 man/sEddyProc_sGLFluxPartition.Rd | 64 man/sEddyProc_sGLFluxPartitionUStarScens.Rd | 38 man/sEddyProc_sGetData.Rd | 30 man/sEddyProc_sGetEstimatedUstarThresholdDistribution.Rd | 36 man/sEddyProc_sGetUstarScenarios.Rd | 32 man/sEddyProc_sMDSGapFill.Rd | 190 +- man/sEddyProc_sMDSGapFillAfterUStarDistr.Rd | 60 man/sEddyProc_sMDSGapFillAfterUstar.Rd | 122 - man/sEddyProc_sMDSGapFillUStarScens.Rd | 80 man/sEddyProc_sMRFluxPartition.Rd | 258 +- man/sEddyProc_sMRFluxPartitionUStarScens.Rd | 38 man/sEddyProc_sPlotDailySums.Rd | 78 man/sEddyProc_sPlotDailySumsY.Rd | 114 - man/sEddyProc_sPlotDiurnalCycle.Rd | 78 man/sEddyProc_sPlotFingerprint.Rd | 74 man/sEddyProc_sPlotFingerprintY.Rd | 100 - man/sEddyProc_sPlotHHFluxes.Rd | 74 man/sEddyProc_sPlotHHFluxesY.Rd | 66 man/sEddyProc_sPlotNEEVersusUStarForSeason.Rd | 70 man/sEddyProc_sSetLocationInfo.Rd | 58 man/sEddyProc_sSetUStarSeasons.Rd | 36 man/sEddyProc_sSetUstarScenarios.Rd | 54 man/sEddyProc_sTKFluxPartition.Rd | 40 man/sEddyProc_sTKFluxPartitionUStarScens.Rd | 38 man/sEddyProc_useAnnualUStarThresholds.Rd | 30 man/sEddyProc_useSeaonsalUStarThresholds.Rd | 30 man/usControlUstarEst.Rd | 102 - man/usControlUstarSubsetting.Rd | 68 man/usCreateSeasonFactorMonth.Rd | 80 man/usCreateSeasonFactorMonthWithinYear.Rd | 66 man/usCreateSeasonFactorYday.Rd | 64 man/usCreateSeasonFactorYdayYear.Rd | 68 man/usEstUstarThreshold.Rd | 274 +-- man/usEstUstarThresholdSingleFw1Binned.Rd | 42 man/usEstUstarThresholdSingleFw2Binned.Rd | 44 man/usGetAnnualSeasonUStarMap.Rd | 40 man/usGetSeasonalSeasonUStarMap.Rd | 40 man/usGetYearOfSeason.Rd | 44 tests/testthat/test_fConvertTimeToPosix.R | 47 117 files changed, 6507 insertions(+), 5798 deletions(-)
Title: Tools for Modelling of Animal Flight Performance
Description: Allows estimation and modelling of flight costs in animal (vertebrate) flight,
implementing the aerodynamic power model described in Klein Heerenbrink et al.
(2015) <doi:10.1098/rspa.2014.0952>. Taking inspiration from the program
'Flight', developed by Colin Pennycuick (Pennycuick (2008) "Modelling the flying
bird". Amsterdam: Elsevier. ISBN 0-19-857721-4), flight performance is estimated
based on basic morphological measurements such as body mass, wingspan and wing
area. 'afpt' can be used to make predictions on how animals should adjust their
flight behaviour and wingbeat kinematics to varying flight conditions.
Author: Marco KleinHeerenbrink [aut, cre],
Anders Hedenström [fnd]
Maintainer: Marco KleinHeerenbrink <Marco.KleinHeerenbrink@zoo.ox.ac.uk>
Diff between afpt versions 1.0.0 dated 2017-09-01 and 1.1.0.0 dated 2020-03-17
DESCRIPTION | 10 MD5 | 65 +- NAMESPACE | 65 +- R/Bird.R | 318 ++++++------- R/computeChemicalPower.R | 32 - R/computeFlappingPower.R | 350 +++++++------- R/computeFlightPerformance.R | 178 +++---- R/findMaximumClimbRate.R | 233 +++++---- R/findMaximumRangeSpeed.R | 174 +++---- R/findMinimumTimeSpeed.R |only R/internalFunctions.R | 38 + R/print.R | 94 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/afpt-advanced-usage.R |only inst/doc/afpt-advanced-usage.Rmd |only inst/doc/afpt-advanced-usage.html |only inst/doc/afpt-aerodynamic-model.R | 194 ++++---- inst/doc/afpt-aerodynamic-model.html | 814 +++++++++++++++++++++------------- inst/doc/afpt-basic-usage.R | 190 +++---- inst/doc/afpt-basic-usage.Rmd | 366 +++++++-------- inst/doc/afpt-basic-usage.html | 836 ++++++++++++++++++++++------------- inst/doc/afpt-multiple-birds.R | 168 +++---- inst/doc/afpt-multiple-birds.Rmd | 234 ++++----- inst/doc/afpt-multiple-birds.html | 778 ++++++++++++++++++-------------- man/computeChemicalPower.Rd | 114 ++-- man/computeFlappingPower.Rd | 303 ++++++------ man/computeFlightPerformance.Rd | 204 ++++---- man/findMaximumPowerSpeed.Rd | 123 ++--- man/findMaximumRangeSpeed.Rd | 114 ++-- man/findMinimumTimeSpeed.Rd |only tests/testthat/test_MechChem.R |only tests/testthat/test_multipleBirds.R | 94 +-- vignettes/afpt-advanced-usage.Rmd |only vignettes/afpt-basic-usage.Rmd | 366 +++++++-------- vignettes/afpt-multiple-birds.Rmd | 234 ++++----- vignettes/references.bib | 344 ++++++++------ 37 files changed, 3849 insertions(+), 3184 deletions(-)
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <http://www.iconplc.com/innovation/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.7 dated 2020-02-04 and 0.4.8 dated 2020-03-17
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 3 +++ R/fetch_data.R | 2 +- R/plot_amt.R | 2 +- R/read_nm_files.R | 9 +++++++-- build/vignette.rds |binary data/xpdb_ex_pk.rda |binary inst/doc/access_xpdb_data.html | 2 +- inst/doc/customize_plots.html | 2 +- inst/doc/import_model_outputs.html | 2 +- inst/doc/introduction.html | 2 +- inst/doc/multiple_pages.html | 2 +- inst/doc/vpc.html | 2 +- man/amt_vs_idv.Rd | 2 +- man/minimization_plots.Rd | 6 ++++-- man/xpdb_ex_pk.Rd | 4 +++- tests/testthat/test-fetch_data.R | 2 +- 18 files changed, 48 insertions(+), 36 deletions(-)
Title: 'KorAP' Web Service Client Package
Description: A client package that makes the 'KorAP' web service API accessible from R.
The corpus analysis platform 'KorAP' has been developed as a scientific tool to make
potentially large, stratified and multiply annotated corpora, such as the 'German Reference Corpus DeReKo'
or the 'Corpus of the Contemporary Romanian Language CoRoLa', accessible for linguists to let them verify
hypotheses and to find interesting patterns in real language use.
The 'RKorAPClient' package provides access to 'KorAP' and the corpora behind it for user-created R code,
as a programmatic alternative to the 'KorAP' web user-interface.
You can learn more about 'KorAP' and use it directly on 'DeReKo' at <https://korap.ids-mannheim.de/>.
Author: Marc Kupietz [aut, cre],
Nils Diewald [ctb],
Leibniz Institute for the German Language [cph, fnd]
Maintainer: Marc Kupietz <kupietz@ids-mannheim.de>
Diff between RKorAPClient versions 0.5.6 dated 2020-03-13 and 0.5.7 dated 2020-03-17
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 15 +++++++++++++++ R/highcharter-helper.R | 6 ++++-- 4 files changed, 27 insertions(+), 10 deletions(-)
Title: Basic Functions for Power Analysis
Description: Power analysis functions along the lines of Cohen (1988).
Author: Stephane Champely [aut],
Claus Ekstrom [ctb],
Peter Dalgaard [ctb],
Jeffrey Gill [ctb],
Stephan Weibelzahl [ctb],
Aditya Anandkumar [ctb],
Clay Ford [ctb],
Robert Volcic [ctb],
Helios De Rosario [cre]
Maintainer: Helios De Rosario <helios.derosario@gmail.com>
Diff between pwr versions 1.2-2 dated 2018-03-03 and 1.3-0 dated 2020-03-17
DESCRIPTION | 10 MD5 | 44 - NEWS | 10 R/pwr.2p.test.R | 68 +- R/pwr.2p2n.test.R | 78 +-- R/pwr.anova.test.R | 54 +- R/pwr.chisq.test.R | 45 - R/pwr.f2.test.R | 54 +- R/pwr.norm.test.R | 60 +- R/pwr.p.test.R | 66 +- R/pwr.r.test.R | 59 +- R/pwr.t.test.R | 71 +- R/pwr.t2n.test.R | 80 +-- build/vignette.rds |binary inst/doc/pwr-vignette.R | 119 ++-- inst/doc/pwr-vignette.Rmd | 165 +++--- inst/doc/pwr-vignette.html | 1146 +++++++++++++++++++++++++++++++-------------- man/plot.power.htest.Rd | 2 man/pwr-package.Rd | 10 man/pwr.2p2n.test.Rd | 5 man/pwr.f2.test.Rd | 8 man/pwr.r.test.Rd | 2 vignettes/pwr-vignette.Rmd | 165 +++--- 23 files changed, 1393 insertions(+), 928 deletions(-)
Title: Patient Rule Induction Method (PRIM)
Description: Patient Rule Induction Method (PRIM) for bump hunting in high-dimensional data.
Author: Tarn Duong <tarn.duong@gmail.com>
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between prim versions 1.0.16 dated 2015-09-08 and 1.0.17 dated 2020-03-17
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 1 - R/prim.R | 36 ++++++++++++++++++------------------ build/vignette.rds |binary inst/doc/prim-2d.pdf |binary inst/doc/prim-3d.pdf |binary 7 files changed, 28 insertions(+), 29 deletions(-)
Title: Full Factorials, Orthogonal Arrays and Base Utilities for DoE
Packages
Description: Creates full factorial experimental designs and designs based on orthogonal arrays for (industrial) experiments. Provides diverse quality criteria. Provides utility functions for the class design, which is also used by other packages for designed experiments.
Author: Ulrike Groemping [aut, cre],
Boyko Amarov [ctb],
Hongquan Xu [ctb]
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between DoE.base versions 1.1-3 dated 2019-05-03 and 1.1-4 dated 2020-03-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/fac.design.R | 7 ++++--- R/utilities.R | 4 +++- inst/NEWS | 12 ++++++++++++ man/class-design.Rd | 1 - man/export.design.Rd | 2 ++ man/oa.design.Rd | 1 - 8 files changed, 32 insertions(+), 17 deletions(-)
Title: Music Notation Syntax, Manipulation, Analysis and Transcription
in R
Description: Provides a music notation syntax and a collection of music programming functions for generating, manipulating, organizing and analyzing musical information in R.
The music notation framework facilitates creating and analyzing music data in notation form.
Music data can be viewed, manipulated and analyzed while in different forms of representation based around different data structures: strings and data frames.
Each representation offers advantages over the other for different use cases.
Music syntax can be entered directly and represented in character strings to minimize the formatting overhead of data entry by using simple data structures, for example when wanting to quickly enter and transcribe short pieces of music to sheet music or tablature.
The package contains functions for directly performing various mathematical, logical and organizational operations and musical transformations on special object classes that facilitate working with music data and notation.
The same music data can also be organized in tidy data frames, allowing for a more familiar and powerful approach to the analysis of large amounts of structured music data.
Functions are available for mapping seamlessly between these data structures and their representations of musical information.
The package also provides API wrapper functions for transcribing musical representations in R into guitar tablature ("tabs") and basic sheet music using the 'LilyPond' backend (<http://lilypond.org>).
'LilyPond' is open source music engraving software for generating high quality sheet music based on markup syntax.
The package generates 'LilyPond' files from R code and can pass them to 'LilyPond' to be rendered into sheet music pdf files.
The package offers nominal MIDI file output support in conjunction with rendering sheet music.
The package can read MIDI files and attempts to structure the MIDI data to integrate as best as possible with the data structures and functionality found throughout the package.
Author: Matthew Leonawicz [aut, cre] (<https://orcid.org/0000-0001-9452-2771>)
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between tabr versions 0.4.1 dated 2020-02-09 and 0.4.2 dated 2020-03-17
DESCRIPTION | 8 MD5 | 58 +++--- NAMESPACE | 12 + NEWS.md | 9 R/convert.R | 2 R/freq.R | 130 +++++++++++++ R/lilypond.R | 2 R/utils.R |only README.md | 372 +++++++++++++++++++-------------------- build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/tabr-prog-chords.html | 150 +++++++-------- inst/doc/tabr-prog-music.html | 114 +++++------ inst/doc/tabr-prog-noteinfo.html | 74 +++---- inst/doc/tabr-prog-notes.html | 192 ++++++++++---------- inst/doc/tabr-prog-nw.html | 86 ++++----- inst/doc/tabr-prog-scales.html | 120 ++++++------ man/articulations.Rd | 4 man/chord_break.Rd | 38 +-- man/freq_ratio.Rd |only man/guitarChords.Rd | 28 +- man/lilypond_root.Rd |only man/mainIntervals.Rd | 30 +-- man/pipe.Rd | 22 +- man/pitch_freq.Rd | 7 man/rest.Rd | 44 ++-- man/tabrSyntax.Rd | 32 +-- man/tie.Rd | 50 ++--- man/to_tabr.Rd | 2 man/tunings.Rd | 32 +-- tests/testthat/test-freq.R | 28 ++ tests/testthat/test-utils.R |only 32 files changed, 920 insertions(+), 728 deletions(-)
Title: Statistical Framework to Define Subgroups in Complex Datasets
Description: High-dimensional datasets that do not exhibit a clear intrinsic clustered structure pose a challenge to conventional clustering algorithms. For this reason, we developed an unsupervised framework that helps scientists to better subgroup their datasets based on visual cues, please see Gao S, Mutter S, Casey A, Makinen V-P (2019) Numero: a statistical framework to define multivariable subgroups in complex population-based datasets, Int J Epidemiology, 48:369-37, <doi:10.1093/ije/dyy113>. The framework includes the necessary functions to construct a self-organizing map of the data, to evaluate the statistical significance of the observed data patterns, and to visualize the results.
Author: Song Gao [aut],
Stefan Mutter [aut],
Aaron E. Casey [aut],
Ville-Petteri Makinen [aut, cre]
Maintainer: Ville-Petteri Makinen <vpmakine@gmail.com>
Diff between Numero versions 1.4.1 dated 2020-02-05 and 1.4.2 dated 2020-03-17
DESCRIPTION | 8 +++--- MD5 | 33 ++++++++++++++-------------- R/nroPlot.save.R | 4 +-- R/nroSummary.R | 12 +++++----- R/numero.plot.R | 2 - R/numero.summary.R | 7 +++++ inst/doc/intro.html | 48 ++++++++++++++++++++--------------------- man/numero.summary.Rd | 4 +++ src/abacus.version.cpp | 2 - src/scriptum.color.cpp | 2 - src/scriptum.frame.box.cpp |only src/scriptum.frame.curve.cpp | 40 ++++++++++++++++++++++++++++++++++ src/scriptum.frame.stylize.cpp | 12 ++++++---- src/scriptum.h | 12 ++++++++++ src/scriptum.limes.cpp | 28 +++++++++++++++++++++++ src/scriptum.local.h | 1 src/scriptum.style2code.cpp | 18 ++++++++++----- src/scriptum.version.cpp | 2 - 18 files changed, 170 insertions(+), 65 deletions(-)
Title: Multi-Objective Optimization for Collecting Cluster Alternatives
Description: Provides methods to analyze cluster alternatives based on multi-objective optimization of cluster validation indices. For details see Kraus et al. (2011) <doi:10.1007/s00180-011-0244-6>.
Author: Johann Kraus <johann.kraus@uni-ulm.de>
Maintainer: Hans Kestler <hans.kestler@uni-ulm.de>
Diff between MOCCA versions 1.3 dated 2018-06-08 and 1.4 dated 2020-03-17
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/utils.R | 33 +++++++++++++++++++++++++++------ man/MOCCA-package.Rd | 6 +++--- man/analyzePareto.Rd | 1 + man/mocca.Rd | 1 + 7 files changed, 44 insertions(+), 21 deletions(-)
Title: Creates Ideal Data for Generalized Linear Models
Description: Have you ever struggled to find "good data" for a generalized linear model? Would you like
to test how quickly statistics converge to parameters, or learn how picking different
link functions affects model performance? This package creates ideal data for both common
and novel generalized linear models so your questions can be empirically answered.
Author: Greg McMahan
Maintainer: Greg McMahan <gmcmacran@gmail.com>
Diff between GlmSimulatoR versions 0.2 dated 2019-11-28 and 0.2.1 dated 2020-03-17
GlmSimulatoR-0.2.1/GlmSimulatoR/DESCRIPTION | 6 GlmSimulatoR-0.2.1/GlmSimulatoR/MD5 | 54 - GlmSimulatoR-0.2.1/GlmSimulatoR/NEWS.md | 3 GlmSimulatoR-0.2.1/GlmSimulatoR/R/simulating_functions.R | 22 GlmSimulatoR-0.2.1/GlmSimulatoR/README.md | 64 -- GlmSimulatoR-0.2.1/GlmSimulatoR/build/vignette.rds |binary GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/count_data_and_overdispersion.Rmd | 7 GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/count_data_and_overdispersion.html | 212 +++--- GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/dealing_with_right_skewed_data.Rmd | 4 GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/dealing_with_right_skewed_data.html | 244 +++---- GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/exploring_links_for_the_gaussian_distribution.R | 12 GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/exploring_links_for_the_gaussian_distribution.Rmd | 22 GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/exploring_links_for_the_gaussian_distribution.html | 308 ++-------- GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/introduction.R | 6 GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/introduction.Rmd | 6 GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/introduction.html | 169 +---- GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/stepwise_search.R |only GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/stepwise_search.Rmd |only GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/stepwise_search.html |only GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/tweedie_distribution.Rmd | 4 GlmSimulatoR-0.2.1/GlmSimulatoR/inst/doc/tweedie_distribution.html | 64 -- GlmSimulatoR-0.2.1/GlmSimulatoR/man/simulate_gaussian.Rd | 21 GlmSimulatoR-0.2.1/GlmSimulatoR/vignettes/count_data_and_overdispersion.Rmd | 7 GlmSimulatoR-0.2.1/GlmSimulatoR/vignettes/dealing_with_right_skewed_data.Rmd | 4 GlmSimulatoR-0.2.1/GlmSimulatoR/vignettes/exploring_links_for_the_gaussian_distribution.Rmd | 22 GlmSimulatoR-0.2.1/GlmSimulatoR/vignettes/introduction.Rmd | 6 GlmSimulatoR-0.2.1/GlmSimulatoR/vignettes/stepwise_search.Rmd |only GlmSimulatoR-0.2.1/GlmSimulatoR/vignettes/tweedie_distribution.Rmd | 4 GlmSimulatoR-0.2/GlmSimulatoR/inst/doc/forward_stepwise_search.R |only GlmSimulatoR-0.2/GlmSimulatoR/inst/doc/forward_stepwise_search.Rmd |only GlmSimulatoR-0.2/GlmSimulatoR/inst/doc/forward_stepwise_search.html |only GlmSimulatoR-0.2/GlmSimulatoR/vignettes/forward_stepwise_search.Rmd |only 32 files changed, 508 insertions(+), 763 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.0.3 dated 2019-11-08 and 1.0.4 dated 2020-03-17
Rcpp-1.0.3/Rcpp/R/unit.tests.R |only Rcpp-1.0.3/Rcpp/inst/unitTests |only Rcpp-1.0.3/Rcpp/tests/doRUnit.R |only Rcpp-1.0.4/Rcpp/ChangeLog | 288 +++ Rcpp-1.0.4/Rcpp/DESCRIPTION | 12 Rcpp-1.0.4/Rcpp/MD5 | 369 ++-- Rcpp-1.0.4/Rcpp/R/Attributes.R | 71 Rcpp-1.0.4/Rcpp/README.md | 18 Rcpp-1.0.4/Rcpp/build/vignette.rds |binary Rcpp-1.0.4/Rcpp/inst/NEWS.Rd | 63 Rcpp-1.0.4/Rcpp/inst/bib/Rcpp.bib | 46 Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-attributes.pdf |binary Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-extending.pdf |binary Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-introduction.pdf |binary Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-jss-2011.pdf |binary Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-modules.pdf |binary Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-package.pdf |binary Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-quickref.pdf |binary Rcpp-1.0.4/Rcpp/inst/doc/Rcpp-sugar.pdf |binary Rcpp-1.0.4/Rcpp/inst/include/Rcpp.h | 2 Rcpp-1.0.4/Rcpp/inst/include/Rcpp/Function.h | 8 Rcpp-1.0.4/Rcpp/inst/include/Rcpp/XPtr.h | 83 Rcpp-1.0.4/Rcpp/inst/include/Rcpp/config.h | 10 Rcpp-1.0.4/Rcpp/inst/include/Rcpp/exceptions.h | 32 Rcpp-1.0.4/Rcpp/inst/include/Rcpp/exceptions_impl.h |only Rcpp-1.0.4/Rcpp/inst/include/Rcpp/generated/Function__operator.h | 42 Rcpp-1.0.4/Rcpp/inst/include/Rcpp/generated/Vector__create.h | 888 +++++----- Rcpp-1.0.4/Rcpp/inst/include/Rcpp/lang.h | 297 +-- Rcpp-1.0.4/Rcpp/inst/include/Rcpp/module/Module.h | 15 Rcpp-1.0.4/Rcpp/inst/include/Rcpp/vector/Matrix.h | 3 Rcpp-1.0.4/Rcpp/inst/include/Rcpp/vector/Vector.h | 19 Rcpp-1.0.4/Rcpp/inst/tinytest |only Rcpp-1.0.4/Rcpp/man/sourceCpp.Rd | 6 Rcpp-1.0.4/Rcpp/src/api.cpp | 141 - Rcpp-1.0.4/Rcpp/src/attributes.cpp | 71 Rcpp-1.0.4/Rcpp/src/barrier.cpp | 11 Rcpp-1.0.4/Rcpp/src/date.cpp | 33 Rcpp-1.0.4/Rcpp/tests/tinytest.R |only Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-FAQ.pdf |binary Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-attributes.pdf |binary Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-extending.pdf |binary Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-introduction.pdf |binary Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-jss-2011.pdf |binary Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-modules.pdf |binary Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-package.pdf |binary Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-quickref.pdf |binary Rcpp-1.0.4/Rcpp/vignettes/pdf/Rcpp-sugar.pdf |binary 48 files changed, 1398 insertions(+), 1130 deletions(-)
Title: Rapid Calculation of Model Metrics
Description: Collection of metrics for evaluating models written in C++ using 'Rcpp'. Popular metrics include area under the curve, log loss, root mean square error, etc.
Author: Tyler Hunt [aut, cre]
Maintainer: Tyler Hunt <thunt@snapfinance.com>
Diff between ModelMetrics versions 1.2.2.1 dated 2020-01-13 and 1.2.2.2 dated 2020-03-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/auc_.cpp | 2 ++ src/gini_.cpp | 2 ++ 4 files changed, 10 insertions(+), 6 deletions(-)
Title: Cluster Validation Techniques
Description: Package contains most of the popular internal and external
cluster validation methods ready to use for the most of the
outputs produced by functions coming from package "cluster".
Package contains also functions and examples of usage for
cluster stability approach that might be applied to algorithms
implemented in "cluster" package as well as user defined
clustering algorithms.
Author: Lukasz Nieweglowski <wookashn@gmail.com>
Maintainer: Lukasz Nieweglowski <wookashn@gmail.com>
Diff between clv versions 0.3-2.1 dated 2013-11-11 and 0.3-2.2 dated 2020-03-17
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/VCLDefines.c | 1 - 3 files changed, 5 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-03 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-01 0.2.0
2016-08-25 0.1.0
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2019-09-19 0.0.7
2019-03-19 0.0.6
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2018-02-08 0.0.2.0
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2019-04-11 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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