Title: Automatic Calculation of Effects for Piecewise Structural
Equation Models
Description: Provides functionality to automatically calculate direct, indirect,
and total effects from piecewise structural equation models, comprising
lists of fitted models representing structured equations (Lefcheck 2016
<doi:10/f8s8rb>). Confidence intervals are provided via bootstrapping.
Author: Mark Murphy [aut, cre]
Maintainer: Mark Murphy <murphymv@gmail.com>
Diff between semEff versions 0.2.1 dated 2020-01-15 and 0.3.0 dated 2020-03-25
DESCRIPTION | 8 MD5 | 47 ++-- NAMESPACE | 3 NEWS.md | 31 +++ R/boot_fun.R | 14 - R/helper_fun.R | 7 R/sem_eff_fun.R | 44 ++-- R/std_coeff_fun.R | 492 ++++++++++++++++++++++++++---------------------- README.md | 2 data/Shipley.rda |binary inst/WORDLIST | 17 + man/R2.Rd | 10 man/Shipley.Growth.Rd | 6 man/Shipley.Rd | 6 man/Shipley.SEM.Boot.Rd | 6 man/Shipley.SEM.Eff.Rd | 6 man/Shipley.SEM.Rd | 6 man/VIF.Rd | 2 man/bootEff.Rd | 14 - man/getY.Rd | 152 +------------- man/glt.Rd |only man/predEff.Rd | 24 +- man/print.semEff.Rd | 32 +-- man/stdCoeff.Rd | 78 ++++--- man/varW.Rd | 4 25 files changed, 505 insertions(+), 506 deletions(-)
Title: Time Series Representations
Description: Methods for representations (i.e. dimensionality reduction, preprocessing, feature extraction) of time series to help more accurate and effective time series data mining.
Non-data adaptive, data adaptive, model-based and data dictated (clipped) representation methods are implemented. Also min-max and z-score normalisations, and forecasting accuracy measures are implemented.
Author: Peter Laurinec [aut, cre] (<https://orcid.org/0000-0002-3501-8783>)
Maintainer: Peter Laurinec <tsreprpackage@gmail.com>
Diff between TSrepr versions 1.0.3 dated 2019-05-31 and 1.0.4 dated 2020-03-25
DESCRIPTION | 10 MD5 | 54 +-- NAMESPACE | 2 NEWS.md | 7 R/RcppExports.R | 56 +++ R/TSrepr-package.R | 1 build/vignette.rds |binary inst/doc/TSrepr_extentions.R | 68 ++-- inst/doc/TSrepr_extentions.Rmd | 52 ++- inst/doc/TSrepr_extentions.html | 210 ++++++++----- inst/doc/TSrepr_representations_of_time_series.R | 32 +- inst/doc/TSrepr_representations_of_time_series.html | 253 +++++++++------- inst/doc/TSrepr_representations_use_case.R | 127 +++++--- inst/doc/TSrepr_representations_use_case.Rmd | 101 ++++-- inst/doc/TSrepr_representations_use_case.html | 311 ++++++++++++-------- man/TSrepr.Rd | 2 man/elec_load.Rd | 4 man/maape.Rd | 2 man/mape.Rd | 2 man/norm_min_max_params.Rd |only man/norm_z_params.Rd |only man/repr_matrix.Rd | 11 man/smape.Rd | 2 src/RcppExports.cpp | 28 + src/measures.cpp | 42 ++ src/normalizations.cpp | 90 +++++ tests/testthat/test_normalisations.R | 5 vignettes/TSrepr_extentions.Rmd | 52 ++- vignettes/TSrepr_representations_use_case.Rmd | 101 ++++-- 29 files changed, 1112 insertions(+), 513 deletions(-)
Title: WOFOST Crop Growth Simulation Model
Description: An implementation of the WOFOST ("World Food Studies") crop growth model. WOFOST is a dynamic simulation model that uses daily weather data, and crop, soil and management parameters to simulate crop growth and development. See De Wit et al. (2019) <doi:10.1016/j.agsy.2018.06.018> for a recent review of the history and use of the model.
Author: Robert J. Hijmans [cre, aut],
Huang Fang [ctb],
C.A. van Diepen [ctb],
Allard de Wit [ctb],
Daniel van Kraalingen [ctb],
Tamme van der Wal [ctb],
C. Rappoldt [ctb],
Hendrik Boogard [ctb],
I.G.A.M. Noy [ctb],
Alterra, Wageningen-UR [cph]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between Rwofost versions 0.6-1 dated 2020-03-22 and 0.6-3 dated 2020-03-25
DESCRIPTION | 8 +- MD5 | 30 +++---- build/partial.rdb |binary src/SimUtil.h | 17 ++-- src/cropsi.cpp | 199 +++++++++++++++++++++++++------------------------- src/evtra.cpp | 26 ++---- src/penman.cpp | 2 src/rootd.cpp | 10 +- src/soil.cpp | 19 ++-- src/totass.cpp | 4 - src/vernalisation.cpp | 2 src/watfd.cpp | 102 +++++++++++++------------ src/watgw.cpp | 90 +++++++++++----------- src/watpp.cpp | 24 +++--- src/wofost.cpp | 141 ++++++++++++++++++----------------- src/wofost.h | 58 ++++++-------- 16 files changed, 365 insertions(+), 367 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source package.
'pkgdown' converts your documentation, vignettes, 'README', and more to
'HTML' making it easy to share information about your package online.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Jay Hesselberth [aut] (<https://orcid.org/0000-0002-6299-179X>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pkgdown versions 1.4.1 dated 2019-09-14 and 1.5.0 dated 2020-03-25
pkgdown-1.4.1/pkgdown/R/build-cname.R |only pkgdown-1.4.1/pkgdown/R/github.R |only pkgdown-1.4.1/pkgdown/tests/testthat/test-build-cname.R |only pkgdown-1.4.1/pkgdown/tests/testthat/test-build_article.R |only pkgdown-1.4.1/pkgdown/tests/testthat/test-github.R |only pkgdown-1.5.0/pkgdown/DESCRIPTION | 10 pkgdown-1.5.0/pkgdown/MD5 | 279 +++++----- pkgdown-1.5.0/pkgdown/NAMESPACE | 1 pkgdown-1.5.0/pkgdown/NEWS.md | 177 ++++++ pkgdown-1.5.0/pkgdown/R/autolink_html.R | 6 pkgdown-1.5.0/pkgdown/R/build-articles.R | 147 +++-- pkgdown-1.5.0/pkgdown/R/build-github.R |only pkgdown-1.5.0/pkgdown/R/build-home-authors.R | 6 pkgdown-1.5.0/pkgdown/R/build-home-citation.R | 26 pkgdown-1.5.0/pkgdown/R/build-home-index.R | 34 - pkgdown-1.5.0/pkgdown/R/build-home.R | 33 - pkgdown-1.5.0/pkgdown/R/build-news.R | 43 + pkgdown-1.5.0/pkgdown/R/build-reference-index.R | 108 ++- pkgdown-1.5.0/pkgdown/R/build-reference.R | 111 ++- pkgdown-1.5.0/pkgdown/R/build.r | 40 + pkgdown-1.5.0/pkgdown/R/deploy-site.R | 142 +++-- pkgdown-1.5.0/pkgdown/R/development.R | 2 pkgdown-1.5.0/pkgdown/R/highlight.r | 12 pkgdown-1.5.0/pkgdown/R/html-tweak.R | 58 -- pkgdown-1.5.0/pkgdown/R/init.R | 15 pkgdown-1.5.0/pkgdown/R/link-href.R | 38 + pkgdown-1.5.0/pkgdown/R/link-topic-index.R | 6 pkgdown-1.5.0/pkgdown/R/markdown.R | 10 pkgdown-1.5.0/pkgdown/R/navbar.R | 90 ++- pkgdown-1.5.0/pkgdown/R/package.r | 23 pkgdown-1.5.0/pkgdown/R/rd-html.R | 14 pkgdown-1.5.0/pkgdown/R/render.r | 65 ++ pkgdown-1.5.0/pkgdown/R/repo.R |only pkgdown-1.5.0/pkgdown/R/rmarkdown.R | 30 - pkgdown-1.5.0/pkgdown/R/test.R | 34 + pkgdown-1.5.0/pkgdown/R/topics.R | 168 +++--- pkgdown-1.5.0/pkgdown/R/usage.R | 5 pkgdown-1.5.0/pkgdown/README.md | 62 +- pkgdown-1.5.0/pkgdown/build/vignette.rds |binary pkgdown-1.5.0/pkgdown/inst/assets/bootstrap-toc.css |only pkgdown-1.5.0/pkgdown/inst/assets/bootstrap-toc.js |only pkgdown-1.5.0/pkgdown/inst/assets/pkgdown.css | 121 ++++ pkgdown-1.5.0/pkgdown/inst/assets/pkgdown.js | 5 pkgdown-1.5.0/pkgdown/inst/doc/linking.R | 2 pkgdown-1.5.0/pkgdown/inst/doc/linking.Rmd | 12 pkgdown-1.5.0/pkgdown/inst/doc/linking.html | 26 pkgdown-1.5.0/pkgdown/inst/doc/metadata.R |only pkgdown-1.5.0/pkgdown/inst/doc/metadata.Rmd |only pkgdown-1.5.0/pkgdown/inst/doc/metadata.html |only pkgdown-1.5.0/pkgdown/inst/doc/pkgdown.R | 2 pkgdown-1.5.0/pkgdown/inst/doc/pkgdown.Rmd | 84 +-- pkgdown-1.5.0/pkgdown/inst/doc/pkgdown.html | 98 +-- pkgdown-1.5.0/pkgdown/inst/doc/search.R | 2 pkgdown-1.5.0/pkgdown/inst/doc/search.Rmd | 5 pkgdown-1.5.0/pkgdown/inst/doc/search.html | 19 pkgdown-1.5.0/pkgdown/inst/templates/config-docsearch.json | 2 pkgdown-1.5.0/pkgdown/inst/templates/content-article-index.html | 7 pkgdown-1.5.0/pkgdown/inst/templates/content-article.html | 11 pkgdown-1.5.0/pkgdown/inst/templates/content-home.html | 2 pkgdown-1.5.0/pkgdown/inst/templates/content-news.html | 15 pkgdown-1.5.0/pkgdown/inst/templates/content-reference-index.html | 29 - pkgdown-1.5.0/pkgdown/inst/templates/content-reference-topic.html | 22 pkgdown-1.5.0/pkgdown/inst/templates/content-title-body.html | 6 pkgdown-1.5.0/pkgdown/inst/templates/head.html | 42 + pkgdown-1.5.0/pkgdown/inst/templates/layout.html | 2 pkgdown-1.5.0/pkgdown/man/as_pkgdown.Rd | 2 pkgdown-1.5.0/pkgdown/man/autolink_html.Rd | 12 pkgdown-1.5.0/pkgdown/man/build_articles.Rd | 145 +++-- pkgdown-1.5.0/pkgdown/man/build_favicons.Rd | 2 pkgdown-1.5.0/pkgdown/man/build_home.Rd | 45 + pkgdown-1.5.0/pkgdown/man/build_news.Rd | 14 pkgdown-1.5.0/pkgdown/man/build_reference.Rd | 142 +++-- pkgdown-1.5.0/pkgdown/man/build_site.Rd | 76 ++ pkgdown-1.5.0/pkgdown/man/build_tutorials.Rd | 6 pkgdown-1.5.0/pkgdown/man/clean_site.Rd | 2 pkgdown-1.5.0/pkgdown/man/deploy_site_github.Rd | 28 - pkgdown-1.5.0/pkgdown/man/deploy_to_branch.Rd |only pkgdown-1.5.0/pkgdown/man/index.Rd |only pkgdown-1.5.0/pkgdown/man/init_site.Rd | 16 pkgdown-1.5.0/pkgdown/man/pkgdown-package.Rd | 6 pkgdown-1.5.0/pkgdown/man/rd2html.Rd | 4 pkgdown-1.5.0/pkgdown/man/render_page.Rd | 5 pkgdown-1.5.0/pkgdown/man/templates.Rd | 2 pkgdown-1.5.0/pkgdown/man/test-crayon.Rd | 18 pkgdown-1.5.0/pkgdown/man/test-dont.Rd | 14 pkgdown-1.5.0/pkgdown/man/test-figures.Rd | 14 pkgdown-1.5.0/pkgdown/man/test-links.Rd | 18 pkgdown-1.5.0/pkgdown/man/test-lists.Rd | 35 - 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Title: Extension to 'ggplot2'
Description: The R package 'ggplot2' is a plotting system based on the grammar of graphics.
'GGally' extends 'ggplot2' by adding several functions
to reduce the complexity of combining geometric objects with transformed data.
Some of these functions include a pairwise plot matrix, a two group pairwise plot
matrix, a parallel coordinates plot, a survival plot, and several functions to
plot networks.
Author: Barret Schloerke [aut, cre] (author for ggpairs, ggduo, ggnostic, ggts,
ggfacet, and ggally_*. Contributor for all functions.),
Jason Crowley [aut] (ggparcoord),
Di Cook [aut, ths] (ggscatmat, gglyph),
Heike Hofmann [ths],
Hadley Wickham [ths],
Francois Briatte [aut] (ggcorr, ggnet, ggnet2),
Moritz Marbach [aut] (ggnet, ggnet2),
Edwin Thoen [aut] (ggsurv),
Amos Elberg [aut] (ggnetworkmap),
Joseph Larmarange [aut] (ggcoef),
Ott Toomet [ctb]
Maintainer: Barret Schloerke <schloerke@gmail.com>
Diff between GGally versions 1.4.0 dated 2018-05-17 and 1.5.0 dated 2020-03-25
DESCRIPTION | 15 +++-- MD5 | 112 +++++++++++++++++++++---------------------- NEWS.md | 20 +++++++ R/data-australia-pisa-2012.R | 2 R/find-combo.R | 2 R/gg-plots.R | 59 +++++++++++++--------- R/gglyph.R | 2 R/ggnet.R | 19 +++---- R/ggnet2.R | 14 ++--- R/ggnetworkmap.R | 4 - R/ggnostic.R | 7 +- R/ggpairs.R | 11 +++- R/ggscatmat.R | 20 ++++++- R/ggsurv.R | 38 +++++++++++--- README.md | 17 ++---- build/vignette.rds |binary inst/doc/docs.Rmd | 2 man/add_ref_boxes.Rd | 10 +++ man/australia_PISA2012.Rd | 6 +- man/flea.Rd | 4 + man/ggally_cor.Rd | 25 ++++++++- man/ggally_diagAxis.Rd | 15 ++++- man/ggally_nostic_cooksd.Rd | 12 +++- man/ggally_nostic_hat.Rd | 21 +++++--- man/ggally_nostic_line.Rd | 17 ++++-- man/ggally_nostic_resid.Rd | 27 +++++++--- man/ggally_nostic_se_fit.Rd | 9 ++- man/ggally_nostic_sigma.Rd | 9 ++- man/ggally_ratio.Rd | 9 ++- man/ggally_smooth.Rd | 14 ++++- man/ggally_text.Rd | 13 +++- man/ggcoef.Rd | 25 +++++++-- man/ggcorr.Rd | 35 ++++++++++--- man/ggduo.Rd | 32 ++++++++---- man/ggfacet.Rd | 17 ++++-- man/ggmatrix.Rd | 29 ++++++++--- man/ggmatrix_gtable.Rd | 8 ++- man/ggmatrix_progress.Rd | 9 ++- man/ggnet.Rd | 50 ++++++++++++++----- man/ggnet2.Rd | 65 +++++++++++++++++++----- man/ggnetworkmap.Rd | 25 +++++++-- man/ggnostic.Rd | 35 ++++++++----- man/ggpairs.Rd | 43 ++++++++++++---- man/ggparcoord.Rd | 22 ++++++-- man/ggscatmat.Rd | 12 +++- man/ggsurv.Rd | 31 ++++++++++- man/glyphs.Rd | 15 ++++- man/happy.Rd | 4 + man/nasa.Rd | 4 + man/pigs.Rd | 4 + man/psychademic.Rd | 4 + man/putPlot.Rd | 2 man/rescale01.Rd | 1 man/twitter_spambots.Rd | 4 + man/uppertriangle.Rd | 8 ++- man/wrap.Rd | 7 +- vignettes/docs.Rmd | 2 57 files changed, 727 insertions(+), 301 deletions(-)
Title: Fast Polygon to Raster Conversion
Description: Provides a drop-in replacement for rasterize() from the 'raster'
package that takes 'sf'-type objects, and is much faster. There is support
for the main options provided by the rasterize() function, including
setting the field used and background value, and options for
aggregating multi-layer rasters. Uses the scan line algorithm attributed to
Wylie et al. (1967) <doi:10.1145/1465611.1465619>.
Author: Noam Ross [aut, cre] (<https://orcid.org/0000-0002-2136-0000>),
Michael Sumner [ctb] (<https://orcid.org/0000-0002-2471-7511>),
EcoHealth Alliance [cph],
USAID PREDICT [fnd]
Maintainer: Noam Ross <ross@ecohealthalliance.org>
Diff between fasterize versions 1.0.0 dated 2018-03-22 and 1.0.2 dated 2020-03-25
DESCRIPTION | 18 ++- MD5 | 43 ++++---- NEWS.md | 4 build/vignette.rds |binary inst/doc/using-fasterize.Rmd | 9 + inst/doc/using-fasterize.html | 178 +++++++++++++++++++++--------------- man/fasterize.Rd | 14 +- man/raster-sf-method.Rd | 1 src/check_inputs.h | 2 src/edgelist.cpp | 2 src/edgelist.h | 2 src/fasterize.cpp | 36 ++++--- src/fasterize.h | 2 src/pixelfn.h | 16 +-- src/rasterize_polygon.cpp | 1 src/rasterize_polygon.h | 2 src/utils.cpp | 2 src/utils.h | 4 tests/testthat/test-01-inputcheck.R | 2 tests/testthat/test-02-fasterize.R | 9 - tests/testthat/test-05-by.R | 9 - vignettes/predictfooter.png |only vignettes/using-fasterize.Rmd | 9 + 23 files changed, 202 insertions(+), 163 deletions(-)
Title: Calculates the Test-Statistic for the Drift Burst Hypothesis
Description: Calculates the T-Statistic for the drift burst hypothesis from the working paper Christensen, Oomen and Reno (2018) <DOI:10.2139/ssrn.2842535>. The authors' MATLAB code is available upon request, see: <https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2842535>.
Author: Emil Sjoerup
Maintainer: Emil Sjoerup <emilsjoerup@live.dk>
Diff between DriftBurstHypothesis versions 0.3.0 dated 2019-11-28 and 0.4.0 dated 2020-03-25
ChangeLog | 2 DESCRIPTION | 10 MD5 | 29 +- NAMESPACE | 31 +- R/ClassMethods.R | 539 +++++++++++++++++++++++----------------------- R/Driftbursts.R | 241 ++++++++++---------- R/RcppExports.R | 62 ++--- R/utils.R | 174 +++++++------- build/partial.rdb |binary man/DBHmethods.Rd | 259 +++++++++++----------- man/driftBursts.Rd | 397 +++++++++++++++++---------------- src/DBH.cpp | 115 ++++----- src/Makevars | 3 src/Makevars.win | 14 - src/RcppExports.cpp | 30 +- tests/testthat/Rplots.pdf |only 16 files changed, 962 insertions(+), 944 deletions(-)
More information about DriftBurstHypothesis at CRAN
Permanent link
Title: Utilities for Dates and Times
Description: Utilities for handling dates and times, such
as selecting particular days of the week or month,
formatting timestamps as required by RSS feeds, or
converting timestamp representations of other software
(such as 'MATLAB' and 'Excel') to R. The package is
lightweight (no dependencies, pure R implementations) and
relies only on R's standard classes to represent dates
and times ('Date' and 'POSIXt'); it aims to provide
efficient implementations, through vectorisation and the
use of R's native numeric representations of timestamps
where possible.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>),
Unicode, Inc. [dtc, cph] (source of timezone names in 'tznames')
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between datetimeutils versions 0.3-0 dated 2019-03-21 and 0.4-0 dated 2020-03-25
DESCRIPTION | 25 +++++--- MD5 | 22 ++++--- NAMESPACE | 7 +- NEWS | 14 ++++ R/data.R |only R/functions.R | 105 ++++++++++++++++++++++++------------ build/partial.rdb |binary build/vignette.rds |binary data |only inst/doc/datetimeutils_examples.pdf |binary inst/unitTests/test_results.txt | 8 +- man/guess_datetime.Rd | 49 +++++++++++++--- man/month.name.de.Rd |only man/tznames.Rd |only 14 files changed, 160 insertions(+), 70 deletions(-)
Title: Count Longitudinal Data
Description: Performs regression analysis for longitudinal count data,
allowing for serial dependence among observations from a given
individual and two dimensional random effects on the linear predictor.
Estimation is via maximization of the exact likelihood of a suitably
defined model. Missing values and unbalanced data are allowed;
M. Helena Goncalves et al.(2007) <doi:10.1016/j.csda.2007.03.002>.
Author: M. Helena Goncalves and M. Salome Cabral,
apart from a set of Fortran-77 subroutines written by R. Piessens
and E. de Doncker, belonging to the suite "Quadpack".
Maintainer: M. Helena Goncalves <mhgoncal@ualg.pt>
Diff between cold versions 2.0-0 dated 2019-07-22 and 2.0-1 dated 2020-03-25
DESCRIPTION | 8 - MD5 | 138 +++++++++++++++--------------- NAMESPACE | 1 NEWS | 6 + R/LogL_pss0I_aux.R | 6 - R/LogL_pss0Ic.R | 6 - R/LogL_pss0Ic2.R | 38 ++++++-- R/LogL_pss0Ic2_aux.R | 3 R/LogL_pss0MC.R | 3 R/LogL_pss0MC2.R | 11 +- R/LogL_pss1.R | 3 R/LogL_pss1I.R | 5 - R/LogL_pss1I_aux.R | 2 R/LogL_pss1Ic.R | 5 - R/LogL_pss1Ic2.R | 56 +++++++----- R/LogL_pss1Ic2_aux.R | 1 R/LogL_pssMC1.R | 3 R/LogL_pssMC2.R | 17 +-- R/anova_cold.R | 2 R/cold.R | 73 +++++++--------- R/coldIntegrate.R | 5 - R/fitted_cold.R | 2 R/gradLogL_pss0I.R | 5 - R/gradLogL_pss0Ic.R | 7 - R/gradLogL_pss0Ic2.R | 176 +++++++++++++-------------------------- R/gradLogL_pss0MC.R | 10 -- R/gradLogL_pss0MC2.R | 19 ++-- R/gradLogL_pss1.R | 3 R/gradLogL_pss1I.R | 5 - R/gradLogL_pss1Ic.R | 7 - R/gradLogL_pss1Ic2.R | 203 ++++++++++++++++----------------------------- R/gradLogL_pssMC.R | 7 - R/gradLogL_pssMC2.R | 23 ++--- R/gradlogL_pss0.R | 3 R/logL_pss0.R | 3 R/logL_pss0I.R | 3 R/num_infoIc.R | 6 - R/plot_cold.R | 163 +++++++++++++++--------------------- R/resid_cold.R |only man/anova-methods.Rd | 21 ++-- man/bolus.rd | 19 ++-- man/coeftest-methods.Rd | 6 - man/cold-class.Rd | 1 man/cold.Rd | 47 ++++------ man/coldIntegrate.Rd | 8 - man/datacold.rd | 30 +++--- man/datacoldM.rd | 4 man/fitted-methods.Rd | 4 man/fixeff-methods.Rd | 4 man/getAIC-methods.Rd | 6 - man/getcoef-methods.Rd | 6 - man/getvcov-methods.Rd | 4 man/modelmatrix-methods.Rd | 4 man/plot-methods.Rd | 56 ++++++------ man/randeff-methods.Rd | 2 man/resid-methods.Rd |only man/seizure.rd | 18 +-- man/vareff-methods.Rd | 2 src/d1mach.c | 2 src/efp.f | 5 - src/efp0.f | 5 - src/efpb.f | 2 src/efpss.f | 14 +-- src/efpvar.f | 2 src/efpvar0.f | 4 src/egintp.f | 2 src/eintp.f | 2 src/epssgi.f | 2 src/epssli.f | 2 src/pssgrd.f | 3 src/pssgrd0.f | 3 71 files changed, 604 insertions(+), 723 deletions(-)
More information about coinmarketcapr at CRAN
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Title: An Interface to Specify Causal Graphs and Compute Bounds on
Causal Effects
Description: When causal quantities are not identifiable from the observed data, it still may be possible
to bound these quantities using the observed data. We outline a class of problems for which the
derivation of tight bounds is always a linear programming problem and can therefore, at least
theoretically, be solved using a symbolic linear optimizer. We extend and generalize the
approach of Balke and Pearl (1994) <doi:10.1016/B978-1-55860-332-5.50011-0> and we provide
a user friendly graphical interface for setting up such problems via directed acyclic
graphs (DAG), which only allow for problems within this class to be depicted. The user can
then define linear constraints to further refine their assumptions to meet their specific
problem, and then specify a causal query using a text interface. The program converts this
user defined DAG, query, and constraints, and returns tight bounds. The bounds can be
converted to R functions to evaluate them for specific datasets, and to latex code for
publication. The methods and proofs of tightness and validity of the bounds are described in
a preprint by Sachs, Gabriel, and Sjölander (2020)
<https://sachsmc.github.io/causaloptim/articles/CausalBoundsMethods.pdf>.
Author: Michael C Sachs [aut, cre],
Erin E Gabriel [aut],
Arvid Sjölander [aut],
Alexander A Balke [ctb] ((C++ code)),
Colorado Reed [ctb] ((graph-creator.js))
Maintainer: Michael C Sachs <sachsmc@gmail.com>
Diff between causaloptim versions 0.6.4 dated 2020-03-20 and 0.6.5 dated 2020-03-25
DESCRIPTION | 8 +++---- MD5 | 14 ++++++------ NEWS.md | 7 ++++++ inst/doc/CausalBoundsMethods.pdf |binary inst/doc/shinyapp.html | 16 +++++++------- src/Optimization.cpp | 4 +-- src/Tableau.cpp | 40 +++++++++++++++++------------------ tests/test-graphs-for-known-bounds.R | 2 - 8 files changed, 49 insertions(+), 42 deletions(-)
Title: Lasso, Group Lasso, and Sparse-Group Lasso for Mixed Models
Description: Proximal gradient descent solver for the operators lasso, group
lasso, and sparse-group lasso. The implementation involves backtracking line
search and warm starts. Input data needs to be clustered/grouped for the
(sparse-)group lasso before calling these algorithms.
Author: Jan Klosa [aut, cre],
Noah Simon [ths],
Dörte Wittenburg [ths]
Maintainer: Jan Klosa <klosa@fbn-dummerstorf.de>
Diff between seagull versions 1.0.5 dated 2020-01-31 and 1.0.6 dated 2020-03-25
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 8 ++++++++ R/seagull.R | 17 ++++++++++------- README.md | 2 +- build/vignette.rds |binary inst/doc/seagull.Rmd | 6 +++--- inst/doc/seagull.pdf |binary man/seagull.Rd | 17 ++++++++++------- vignettes/seagull.Rmd | 6 +++--- 10 files changed, 48 insertions(+), 34 deletions(-)
Title: Create and Evaluate NONMEM Models in a Project Context
Description: Systematically creates and modifies NONMEM(R) control streams. Harvests
NONMEM output, builds run logs, creates derivative data, generates diagnostics.
NONMEM (ICON Development Solutions <http://www.iconplc.com/>) is software for
nonlinear mixed effects modeling. See 'package?nonmemica'.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between nonmemica versions 0.9.0 dated 2019-04-25 and 0.9.1 dated 2020-03-25
DESCRIPTION | 6 - MD5 | 10 +- R/partab.R | 2 build/vignette.rds |binary inst/doc/parameter-table.R | 40 +++++------ inst/doc/parameter-table.html | 146 +++++++++++++++++++++--------------------- 6 files changed, 103 insertions(+), 101 deletions(-)
Title: Tidy IP Addresses
Description: Classes and functions for working with IP (Internet
Protocol) addresses and networks, inspired by the Python 'ipaddress'
module. Offers full support for both IPv4 and IPv6 (Internet Protocol
versions 4 and 6) address spaces. It is specifically designed to work
well with the 'tidyverse'.
Author: David Hall [aut, cre] (<https://orcid.org/0000-0002-2193-0480>)
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between ipaddress versions 0.1.2 dated 2020-03-10 and 0.2.0 dated 2020-03-25
ipaddress-0.1.2/ipaddress/R/cast.R |only ipaddress-0.1.2/ipaddress/R/coerce.R |only ipaddress-0.1.2/ipaddress/man/vec_cast.ip_address.Rd |only ipaddress-0.1.2/ipaddress/man/vec_cast.ip_network.Rd |only ipaddress-0.1.2/ipaddress/man/vec_ptype2.ip_address.Rd |only ipaddress-0.1.2/ipaddress/man/vec_ptype2.ip_network.Rd |only ipaddress-0.1.2/ipaddress/src/encoding.cpp |only ipaddress-0.1.2/ipaddress/src/masking.cpp |only ipaddress-0.2.0/ipaddress/DESCRIPTION | 14 ipaddress-0.2.0/ipaddress/MD5 | 114 + ipaddress-0.2.0/ipaddress/NAMESPACE | 74 + ipaddress-0.2.0/ipaddress/NEWS.md | 49 ipaddress-0.2.0/ipaddress/R/RcppExports.R | 148 +- ipaddress-0.2.0/ipaddress/R/binary.R |only ipaddress-0.2.0/ipaddress/R/hostname.R |only ipaddress-0.2.0/ipaddress/R/ip_address.R | 63 ipaddress-0.2.0/ipaddress/R/ip_interface.R |only ipaddress-0.2.0/ipaddress/R/ip_network.R | 98 - ipaddress-0.2.0/ipaddress/R/ip_version.R | 39 ipaddress-0.2.0/ipaddress/R/ipaddress-package.R | 9 ipaddress-0.2.0/ipaddress/R/ipv6_transition.R |only ipaddress-0.2.0/ipaddress/R/network_mask.R | 121 + ipaddress-0.2.0/ipaddress/R/network_size.R |only ipaddress-0.2.0/ipaddress/R/reserved.R |only ipaddress-0.2.0/ipaddress/R/sample.R |only ipaddress-0.2.0/ipaddress/R/sequence.R |only ipaddress-0.2.0/ipaddress/R/vctrs-arithmetic.R |only ipaddress-0.2.0/ipaddress/R/vctrs-cast.R |only ipaddress-0.2.0/ipaddress/R/vctrs-coerce.R |only ipaddress-0.2.0/ipaddress/R/within_network.R | 133 + ipaddress-0.2.0/ipaddress/README.md | 34 ipaddress-0.2.0/ipaddress/build |only ipaddress-0.2.0/ipaddress/inst |only ipaddress-0.2.0/ipaddress/man/address_in_network.Rd | 18 ipaddress-0.2.0/ipaddress/man/binary.Rd |only ipaddress-0.2.0/ipaddress/man/hostname.Rd |only ipaddress-0.2.0/ipaddress/man/ip_address.Rd | 45 ipaddress-0.2.0/ipaddress/man/ip_interface.Rd |only ipaddress-0.2.0/ipaddress/man/ip_network.Rd | 53 ipaddress-0.2.0/ipaddress/man/ipaddress-vctrs.Rd |only ipaddress-0.2.0/ipaddress/man/ipv6-transition.Rd |only ipaddress-0.2.0/ipaddress/man/is_ipv6.Rd | 10 ipaddress-0.2.0/ipaddress/man/is_reserved.Rd |only ipaddress-0.2.0/ipaddress/man/max_prefix_length.Rd |only ipaddress-0.2.0/ipaddress/man/netmask.Rd | 55 ipaddress-0.2.0/ipaddress/man/network_in_network.Rd | 31 ipaddress-0.2.0/ipaddress/man/network_size.Rd |only ipaddress-0.2.0/ipaddress/man/packed.Rd |only ipaddress-0.2.0/ipaddress/man/sample.Rd |only ipaddress-0.2.0/ipaddress/man/sequence.Rd |only ipaddress-0.2.0/ipaddress/src/IpAddressVector.cpp | 701 +++++++++- ipaddress-0.2.0/ipaddress/src/IpAddressVector.h | 124 + ipaddress-0.2.0/ipaddress/src/IpNetworkVector.cpp | 344 ++++ ipaddress-0.2.0/ipaddress/src/IpNetworkVector.h | 74 - ipaddress-0.2.0/ipaddress/src/Makevars |only ipaddress-0.2.0/ipaddress/src/Makevars.win | 2 ipaddress-0.2.0/ipaddress/src/RcppExports.cpp | 440 +++++- ipaddress-0.2.0/ipaddress/src/encoding.h | 56 ipaddress-0.2.0/ipaddress/src/masking.h | 100 + ipaddress-0.2.0/ipaddress/src/sample.h |only ipaddress-0.2.0/ipaddress/src/utils.cpp |only ipaddress-0.2.0/ipaddress/src/utils.h |only ipaddress-0.2.0/ipaddress/src/wrapper.cpp | 265 +++ ipaddress-0.2.0/ipaddress/tests/testthat/test-arithmetic.R |only ipaddress-0.2.0/ipaddress/tests/testthat/test-binary.R |only ipaddress-0.2.0/ipaddress/tests/testthat/test-hostname.R |only ipaddress-0.2.0/ipaddress/tests/testthat/test-ip_address_v4.R | 46 ipaddress-0.2.0/ipaddress/tests/testthat/test-ip_address_v6.R | 25 ipaddress-0.2.0/ipaddress/tests/testthat/test-ip_interface.R |only ipaddress-0.2.0/ipaddress/tests/testthat/test-ip_network_v4.R | 110 + ipaddress-0.2.0/ipaddress/tests/testthat/test-ip_network_v6.R | 76 - ipaddress-0.2.0/ipaddress/tests/testthat/test-ip_version.R | 10 ipaddress-0.2.0/ipaddress/tests/testthat/test-ipv6_transition.R |only ipaddress-0.2.0/ipaddress/tests/testthat/test-network_masks.R | 66 ipaddress-0.2.0/ipaddress/tests/testthat/test-reserved.R |only ipaddress-0.2.0/ipaddress/tests/testthat/test-sample.R |only ipaddress-0.2.0/ipaddress/tests/testthat/test-sequence.R |only ipaddress-0.2.0/ipaddress/tests/testthat/test-within_network.R | 56 ipaddress-0.2.0/ipaddress/vignettes |only 79 files changed, 2982 insertions(+), 621 deletions(-)
Title: Inference, Learning, and Optimization on Stiefel Manifold
Description: Stiefel manifold is a set of orthonormal frames in Euclidean space. We provide algorithms for statistical inference, optimization, and learning over the Stiefel manifold. For general exposition to the statistics on the manifold, see the book by Chikuse (2003) <doi:10.1007/978-0-387-21540-2>.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyoustat@gmail.com>
Diff between RiemStiefel versions 0.1.0 dated 2020-03-15 and 0.1.1 dated 2020-03-25
DESCRIPTION | 9 ++++----- MD5 | 18 +++++++++++------- NAMESPACE | 4 ++++ R/package-RiemStiefel.R | 2 +- R/st_hclust.R |only R/st_pdist.R |only R/st_utest_Rayleigh.R | 2 +- R/zzz.R | 6 +++--- build/partial.rdb |binary man/st.hclust.Rd |only man/st.pdist.Rd |only man/st.utestR.Rd | 2 +- 12 files changed, 25 insertions(+), 18 deletions(-)
Title: Preprocessing and Multivariate Analysis of Bidimensional Gas
Chromatography Data
Description: Toolbox for chemometrics analysis of bidimensional gas
chromatography data. This package import data for common scientific data
format (NetCDF) and fold it to 2D chromatogram. Then, it can perform
preprocessing and multivariate analysis. In the preprocessing algorithms,
baseline correction, smoothing, and peak alignment are available.
While in multivariate analysis, multiway principal component analysis is
incorporated.
Author: Cristian Quiroz-Moreno [aut, cre],
Guilherme L. Alexandrino [aut],
Noroska G.S. Mogollón [aut]
Maintainer: Cristian Quiroz-Moreno <cristianquirozd1997@gmail.com>
Diff between RGCxGC versions 1.1.0 dated 2019-12-12 and 1.1-1 dated 2020-03-25
DESCRIPTION | 23 ++++++------ MD5 | 74 +++++++++++++++++++++-------------------- R/A_classes.R | 12 +++--- R/baseline_corr.R | 4 +- R/batchTwoDCOW.R | 12 +++--- R/dephase_chrom.R | 9 +++- R/import_mixOmics.R | 22 ++++-------- R/join_chromatograms.R | 2 - R/m_prcomp.R | 2 - R/make_loadings.R | 4 +- R/plot.R | 2 - R/print.R | 7 ++- R/read_chrom.R | 4 +- R/reference_chrom.R | 2 - R/scores.R | 2 - R/wsmooth.R | 25 ++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/Explanation.html | 10 ++--- man/GCxGC-class.Rd | 6 +-- man/MPCA-class.Rd | 4 +- man/MTBLS579.Rd | 6 ++- man/Myrothecium.Rd | 6 ++- man/aligned_GCxGC-class.Rd | 4 +- man/baseline_corr.Rd | 4 +- man/batch_2DCOW.Rd | 12 +++--- man/dephase_chrom-methods.Rd | 7 ++- man/import_mixOmics-methods.Rd | 17 +++------ man/join_chromatograms.Rd | 2 - man/m_prcomp.Rd | 2 - man/make_loadings.Rd | 2 - man/plot-methods.Rd | 2 - man/plot_loading-methods.Rd | 3 - man/print-methods.Rd | 7 ++- man/read_chrom.Rd | 13 +++++-- man/scores-methods.Rd | 2 - man/wsmooth.Rd | 16 +++++++- vignettes/RGCxGC.png |only 39 files changed, 187 insertions(+), 144 deletions(-)
Title: Proximity Catch Digraphs and Their Applications
Description: Contains the functions for generating patterns of segregation, association, CSR (complete spatial randomness)
and Uniform data in one, two and three dimensional cases, for testing these patterns based on two invariants of
various families of the proximity catch digraphs (PCDs) (see (Ceyhan (2005) ISBN:978-3-639-19063-2).
The graph invariants used in testing spatial point data are the domination number (Ceyhan (2011)
<doi: 10.1080/03610921003597211>) and arc density (Ceyhan et al. (2006) <doi:10.1016/j.csda.2005.03.002>;
Ceyhan et al. (2007) <doi:10.1002/cjs.5550350106>) of for two-dimensional data for visualization of PCDs for one,
two and three dimensional data. The PCD families considered are Arc-Slice PCDs,
Proportional-Edge PCDs and Central Similarity PCDs.
Author: Elvan Ceyhan
Maintainer: Elvan Ceyhan <elvanceyhan@gmail.com>
Diff between pcds versions 0.1.0 dated 2020-02-29 and 0.1.1 dated 2020-03-25
pcds-0.1.0/pcds/man/Pg2PE1D.asy.Rd |only pcds-0.1.0/pcds/man/Pg2PEtri.Rd |only pcds-0.1.1/pcds/DESCRIPTION | 12 pcds-0.1.1/pcds/MD5 | 558 ++-- pcds-0.1.1/pcds/NAMESPACE | 544 ++-- pcds-0.1.1/pcds/R/AuxRFuncs4PCDClasses.r | 72 pcds-0.1.1/pcds/R/PCDFunctions.r | 3312 +++++++++++++++-------------- pcds-0.1.1/pcds/R/pcds.R |only pcds-0.1.1/pcds/build/partial.rdb |binary pcds-0.1.1/pcds/man/ASarcdens.tri.Rd | 10 pcds-0.1.1/pcds/man/ArcsASMT.Rd | 17 pcds-0.1.1/pcds/man/ArcsAStri.Rd | 17 pcds-0.1.1/pcds/man/ArcsCS1D.Rd | 17 pcds-0.1.1/pcds/man/ArcsCSMI.Rd | 17 pcds-0.1.1/pcds/man/ArcsCSMT.Rd | 17 pcds-0.1.1/pcds/man/ArcsCSend1D.Rd | 15 pcds-0.1.1/pcds/man/ArcsCSmid1D.Rd | 17 pcds-0.1.1/pcds/man/ArcsCStri.Rd | 17 pcds-0.1.1/pcds/man/ArcsPE1D.Rd | 18 pcds-0.1.1/pcds/man/ArcsPEMI.Rd | 18 pcds-0.1.1/pcds/man/ArcsPEMT.Rd | 18 pcds-0.1.1/pcds/man/ArcsPEend1D.Rd | 16 pcds-0.1.1/pcds/man/ArcsPEmid1D.Rd | 18 pcds-0.1.1/pcds/man/ArcsPEtri.Rd | 18 pcds-0.1.1/pcds/man/CSarcdens.tri.Rd | 16 pcds-0.1.1/pcds/man/Dist.Rd | 2 pcds-0.1.1/pcds/man/Gam1ASbastri.Rd | 19 pcds-0.1.1/pcds/man/Gam1AStri.Rd | 14 pcds-0.1.1/pcds/man/Gam1CS.Te.onesixth.Rd | 10 pcds-0.1.1/pcds/man/Gam1CS1D.Rd | 15 pcds-0.1.1/pcds/man/Gam1CSTe.Rd | 8 pcds-0.1.1/pcds/man/Gam1CSTet1.Rd | 14 pcds-0.1.1/pcds/man/Gam1PE1D.Rd | 16 pcds-0.1.1/pcds/man/Gam1PEbastri.Rd | 15 pcds-0.1.1/pcds/man/Gam1PEstdTetra.Rd | 17 pcds-0.1.1/pcds/man/Gam1PEtetra.Rd | 19 pcds-0.1.1/pcds/man/Gam1PEtri.Rd | 15 pcds-0.1.1/pcds/man/Gam2ASbastri.Rd | 17 pcds-0.1.1/pcds/man/Gam2AStri.Rd | 15 pcds-0.1.1/pcds/man/Gam2CS.Te.onesixth.Rd | 10 pcds-0.1.1/pcds/man/Gam2PEbastri.Rd | 18 pcds-0.1.1/pcds/man/Gam2PEstdTetra.Rd | 16 pcds-0.1.1/pcds/man/Gam2PEtetra.Rd | 20 pcds-0.1.1/pcds/man/Gam2PEtri.Rd | 16 pcds-0.1.1/pcds/man/Gam3PEstdTetra.Rd | 19 pcds-0.1.1/pcds/man/Gam3PEtetra.Rd | 23 pcds-0.1.1/pcds/man/IncMatASMT.Rd | 8 pcds-0.1.1/pcds/man/IncMatAStri.Rd | 8 pcds-0.1.1/pcds/man/IncMatCS1D.Rd | 6 pcds-0.1.1/pcds/man/IncMatCSMT.Rd | 8 pcds-0.1.1/pcds/man/IncMatCSTe.Rd | 8 pcds-0.1.1/pcds/man/IncMatCStri.Rd | 8 pcds-0.1.1/pcds/man/IncMatPE1D.Rd | 7 pcds-0.1.1/pcds/man/IncMatPEMT.Rd | 9 pcds-0.1.1/pcds/man/IncMatPETe.Rd | 7 pcds-0.1.1/pcds/man/IncMatPEtetra.Rd | 11 pcds-0.1.1/pcds/man/IncMatPEtri.Rd | 9 pcds-0.1.1/pcds/man/IndASdomUBtri.Rd | 10 pcds-0.1.1/pcds/man/IndCS.Te.onesixth.Rd | 2 pcds-0.1.1/pcds/man/IndCSTe.Rd | 6 pcds-0.1.1/pcds/man/IndCSTe.domset.Rd | 8 pcds-0.1.1/pcds/man/IndCSTeSet.Rd | 4 pcds-0.1.1/pcds/man/IndCSTet1.Rd | 2 pcds-0.1.1/pcds/man/IndCSdomUBTe.Rd | 8 pcds-0.1.1/pcds/man/IndCSdomUBtri.Rd | 11 pcds-0.1.1/pcds/man/IndNASbastri.Rd | 8 pcds-0.1.1/pcds/man/IndNAStri.Rd | 8 pcds-0.1.1/pcds/man/IndNAStri.domset.Rd | 2 pcds-0.1.1/pcds/man/IndNAStriSet.Rd | 8 pcds-0.1.1/pcds/man/IndNCSend1D.Rd | 10 pcds-0.1.1/pcds/man/IndNCSint.Rd | 10 pcds-0.1.1/pcds/man/IndNCSmid1D.Rd | 11 pcds-0.1.1/pcds/man/IndNCStri.Rd | 9 pcds-0.1.1/pcds/man/IndNCStri.alt.Rd | 14 pcds-0.1.1/pcds/man/IndNCStri.domset.Rd | 10 pcds-0.1.1/pcds/man/IndNCStriSet.Rd | 6 pcds-0.1.1/pcds/man/IndNPETe.Rd | 7 pcds-0.1.1/pcds/man/IndNPETe.domset.Rd | 8 pcds-0.1.1/pcds/man/IndNPETeSet.Rd | 4 pcds-0.1.1/pcds/man/IndNPEbastri.Rd | 6 pcds-0.1.1/pcds/man/IndNPEend1D.Rd | 9 pcds-0.1.1/pcds/man/IndNPEint.Rd | 11 pcds-0.1.1/pcds/man/IndNPEmid1D.Rd | 10 pcds-0.1.1/pcds/man/IndNPEstdtetra.Rd | 5 pcds-0.1.1/pcds/man/IndNPEtetra.Rd | 10 pcds-0.1.1/pcds/man/IndNPEtri.Rd | 10 pcds-0.1.1/pcds/man/IndNPEtri.domset.Rd | 10 pcds-0.1.1/pcds/man/IndNPEtriSet.Rd | 6 pcds-0.1.1/pcds/man/IndUBdom.Rd | 6 pcds-0.1.1/pcds/man/Kfr2vTbVRCC.Rd | 25 pcds-0.1.1/pcds/man/Kfr2vVRCC.Rd | 15 pcds-0.1.1/pcds/man/Line.Rd | 13 pcds-0.1.1/pcds/man/Line3D.Rd | 18 pcds-0.1.1/pcds/man/NASbastri.Rd | 13 pcds-0.1.1/pcds/man/NAStri.Rd | 16 pcds-0.1.1/pcds/man/NCSint.Rd | 8 pcds-0.1.1/pcds/man/NCStri.Rd | 11 pcds-0.1.1/pcds/man/NPEbastri.Rd | 12 pcds-0.1.1/pcds/man/NPEint.Rd | 9 pcds-0.1.1/pcds/man/NPEstdtetra.Rd | 8 pcds-0.1.1/pcds/man/NPEtetra.Rd | 11 pcds-0.1.1/pcds/man/NPEtri.Rd | 12 pcds-0.1.1/pcds/man/NumArcsASMT.Rd | 8 pcds-0.1.1/pcds/man/NumArcsAStri.Rd | 8 pcds-0.1.1/pcds/man/NumArcsCSMT.Rd | 10 pcds-0.1.1/pcds/man/NumArcsCSTe.Rd | 8 pcds-0.1.1/pcds/man/NumArcsCSend1D.Rd | 6 pcds-0.1.1/pcds/man/NumArcsCSint.Rd | 8 pcds-0.1.1/pcds/man/NumArcsCSmid1D.Rd | 8 pcds-0.1.1/pcds/man/NumArcsCStri.Rd | 8 pcds-0.1.1/pcds/man/NumArcsPEMT.Rd | 11 pcds-0.1.1/pcds/man/NumArcsPETe.Rd | 7 pcds-0.1.1/pcds/man/NumArcsPEend1D.Rd | 7 pcds-0.1.1/pcds/man/NumArcsPEint.Rd | 9 pcds-0.1.1/pcds/man/NumArcsPEmid1D.Rd | 9 pcds-0.1.1/pcds/man/NumArcsPEtri.Rd | 9 pcds-0.1.1/pcds/man/NumDelTri.Rd | 5 pcds-0.1.1/pcds/man/PEarcdens.tri.Rd | 16 pcds-0.1.1/pcds/man/PEdom.tetra.Rd | 9 pcds-0.1.1/pcds/man/PEdom1D.Rd | 3 pcds-0.1.1/pcds/man/PEdomMT.Rd | 9 pcds-0.1.1/pcds/man/PEdomMTnd.Rd | 7 pcds-0.1.1/pcds/man/PEdomtri.Rd | 9 pcds-0.1.1/pcds/man/PG2PE1D.asy.Rd |only pcds-0.1.1/pcds/man/PG2PEtri.Rd |only pcds-0.1.1/pcds/man/Plane.Rd | 9 pcds-0.1.1/pcds/man/TSArcDensCS1D.Rd | 16 pcds-0.1.1/pcds/man/TSArcDensCSMT.Rd | 16 pcds-0.1.1/pcds/man/TSArcDensPE1D.Rd | 18 pcds-0.1.1/pcds/man/TSArcDensPEMT.Rd | 17 pcds-0.1.1/pcds/man/TSDomPEBin.Rd | 20 pcds-0.1.1/pcds/man/TSDomPEBin1D.Rd | 21 pcds-0.1.1/pcds/man/TSDomPENor.Rd | 20 pcds-0.1.1/pcds/man/XinCHY.Rd | 4 pcds-0.1.1/pcds/man/angle.str2end.Rd | 16 pcds-0.1.1/pcds/man/area.polygon.Rd | 4 pcds-0.1.1/pcds/man/as.bastri.Rd | 4 pcds-0.1.1/pcds/man/cent.nondeg.Rd | 4 pcds-0.1.1/pcds/man/centMc.Rd | 6 pcds-0.1.1/pcds/man/centersMc.Rd | 6 pcds-0.1.1/pcds/man/circ.cent.bastri.Rd | 2 pcds-0.1.1/pcds/man/circ.cent.tetra.Rd | 2 pcds-0.1.1/pcds/man/circ.cent.tri.Rd | 2 pcds-0.1.1/pcds/man/cl2CC.TbVR.Rd | 21 pcds-0.1.1/pcds/man/cl2CC.VR.Rd | 13 pcds-0.1.1/pcds/man/cl2Mc.int.Rd | 15 pcds-0.1.1/pcds/man/cl2eTbVRcent.Rd | 17 pcds-0.1.1/pcds/man/cl2eVRCC.Rd | 13 pcds-0.1.1/pcds/man/cl2eVRCM.Rd | 13 pcds-0.1.1/pcds/man/cl2eVRcent.Rd | 15 pcds-0.1.1/pcds/man/cl2eVRcent.alt.Rd | 17 pcds-0.1.1/pcds/man/cl2edgesTe.Rd | 11 pcds-0.1.1/pcds/man/cl2fVRth.Rd | 13 pcds-0.1.1/pcds/man/cp2e.bastri.Rd | 4 pcds-0.1.1/pcds/man/cp2e.tri.Rd | 4 pcds-0.1.1/pcds/man/cp2edges.nd.Rd | 6 pcds-0.1.1/pcds/man/dist.pt2set.Rd | 6 pcds-0.1.1/pcds/man/dom.exact.Rd | 4 pcds-0.1.1/pcds/man/dom.greedy.Rd | 4 pcds-0.1.1/pcds/man/dp2l.Rd | 2 pcds-0.1.1/pcds/man/dp2pl.Rd | 5 pcds-0.1.1/pcds/man/fr2eTeER.Rd | 16 pcds-0.1.1/pcds/man/fr2vTbVRCC.Rd | 18 pcds-0.1.1/pcds/man/fr2vVRCC.Rd | 13 pcds-0.1.1/pcds/man/funsAB2CMTe.Rd | 15 pcds-0.1.1/pcds/man/funsAB2MTe.Rd | 15 pcds-0.1.1/pcds/man/funsCSEdgeRegs.Rd | 18 pcds-0.1.1/pcds/man/funsCSGamTe.Rd | 38 pcds-0.1.1/pcds/man/funsCSt1EdgeRegs.Rd | 12 pcds-0.1.1/pcds/man/funsCartBary.Rd | 10 pcds-0.1.1/pcds/man/funsIndDelTri.Rd | 19 pcds-0.1.1/pcds/man/funsMuVarCS1D.Rd | 10 pcds-0.1.1/pcds/man/funsMuVarCS2D.Rd | 8 pcds-0.1.1/pcds/man/funsMuVarCSend1D.Rd | 11 pcds-0.1.1/pcds/man/funsMuVarPE1D.Rd | 19 pcds-0.1.1/pcds/man/funsMuVarPE2D.Rd | 9 pcds-0.1.1/pcds/man/funsMuVarPEend1D.Rd | 9 pcds-0.1.1/pcds/man/funsPG2PE1D.Rd | 88 pcds-0.1.1/pcds/man/funsRankOrderTe.Rd | 21 pcds-0.1.1/pcds/man/funsTbMid2CC.Rd | 8 pcds-0.1.1/pcds/man/in.circle.Rd | 6 pcds-0.1.1/pcds/man/in.tetrahedron.Rd | 18 pcds-0.1.1/pcds/man/in.triangle.Rd | 2 pcds-0.1.1/pcds/man/inTriAll.Rd | 4 pcds-0.1.1/pcds/man/int.2lines.Rd | 4 pcds-0.1.1/pcds/man/int.circ.line.Rd | 6 pcds-0.1.1/pcds/man/int.line.plane.Rd | 4 pcds-0.1.1/pcds/man/is.in.data.Rd | 6 pcds-0.1.1/pcds/man/is.point.Rd | 2 pcds-0.1.1/pcds/man/isStdEqTri.Rd | 2 pcds-0.1.1/pcds/man/paraline.Rd | 7 pcds-0.1.1/pcds/man/paraline3D.Rd | 12 pcds-0.1.1/pcds/man/paraplane.Rd | 11 pcds-0.1.1/pcds/man/pcds.Rd |only pcds-0.1.1/pcds/man/perp.ln2pl.Rd | 13 pcds-0.1.1/pcds/man/perpline.Rd | 7 pcds-0.1.1/pcds/man/plot.Extrema.Rd | 6 pcds-0.1.1/pcds/man/plot.Lines.Rd | 6 pcds-0.1.1/pcds/man/plot.Lines3D.Rd | 4 pcds-0.1.1/pcds/man/plot.PCDs.Rd | 6 pcds-0.1.1/pcds/man/plot.Patterns.Rd | 6 pcds-0.1.1/pcds/man/plot.Planes.Rd | 4 pcds-0.1.1/pcds/man/plot.TriLines.Rd | 6 pcds-0.1.1/pcds/man/plot.Uniform.Rd | 6 pcds-0.1.1/pcds/man/plotASarcsMT.Rd | 21 pcds-0.1.1/pcds/man/plotASarcsTri.Rd | 21 pcds-0.1.1/pcds/man/plotASregsMT.Rd | 15 pcds-0.1.1/pcds/man/plotASregsTri.Rd | 15 pcds-0.1.1/pcds/man/plotCSarcs1D.Rd | 21 pcds-0.1.1/pcds/man/plotCSarcsMT.Rd | 16 pcds-0.1.1/pcds/man/plotCSarcsTri.Rd | 21 pcds-0.1.1/pcds/man/plotCSregsInt.Rd | 20 pcds-0.1.1/pcds/man/plotCSregsMI.Rd | 21 pcds-0.1.1/pcds/man/plotCSregsMT.Rd | 21 pcds-0.1.1/pcds/man/plotCSregsTri.Rd | 20 pcds-0.1.1/pcds/man/plotDeltri.Rd | 10 pcds-0.1.1/pcds/man/plotIntervals.Rd | 7 pcds-0.1.1/pcds/man/plotPEarcs1D.Rd | 22 pcds-0.1.1/pcds/man/plotPEarcsMT.Rd | 21 pcds-0.1.1/pcds/man/plotPEarcsTri.Rd | 22 pcds-0.1.1/pcds/man/plotPEregsInt.Rd | 19 pcds-0.1.1/pcds/man/plotPEregsMI.Rd | 22 pcds-0.1.1/pcds/man/plotPEregsMT.Rd | 21 pcds-0.1.1/pcds/man/plotPEregsStdTH.Rd | 13 pcds-0.1.1/pcds/man/plotPEregsTH.Rd | 17 pcds-0.1.1/pcds/man/plotPEregsTri.Rd | 21 pcds-0.1.1/pcds/man/print.TriLines.Rd | 2 pcds-0.1.1/pcds/man/radii.Rd | 2 pcds-0.1.1/pcds/man/radius.Rd | 2 pcds-0.1.1/pcds/man/rasc.disc.Rd | 16 pcds-0.1.1/pcds/man/rasc.matern.Rd | 10 pcds-0.1.1/pcds/man/rasc.tri.Rd | 7 pcds-0.1.1/pcds/man/rascIITe.Rd | 9 pcds-0.1.1/pcds/man/rascMT.Rd | 11 pcds-0.1.1/pcds/man/rascTe.Rd | 9 pcds-0.1.1/pcds/man/re.bastri.cent.Rd | 7 pcds-0.1.1/pcds/man/re.bastriCM.Rd | 5 pcds-0.1.1/pcds/man/re.tri.cent.Rd | 6 pcds-0.1.1/pcds/man/re.triCM.Rd | 4 pcds-0.1.1/pcds/man/reTeCM.Rd | 2 pcds-0.1.1/pcds/man/redge.triCM.Rd | 6 pcds-0.1.1/pcds/man/redges.tri.cent.Rd | 6 pcds-0.1.1/pcds/man/redges.triCM.Rd | 4 pcds-0.1.1/pcds/man/rel.six.Te.Rd | 6 pcds-0.1.1/pcds/man/rseg.disc.Rd | 13 pcds-0.1.1/pcds/man/rseg.tri.Rd | 7 pcds-0.1.1/pcds/man/rsegIITe.Rd | 9 pcds-0.1.1/pcds/man/rsegMT.Rd | 11 pcds-0.1.1/pcds/man/rsegTe.Rd | 9 pcds-0.1.1/pcds/man/runif.bastri.Rd | 12 pcds-0.1.1/pcds/man/runif.stdtetra.Rd | 7 pcds-0.1.1/pcds/man/runif.tetra.Rd | 11 pcds-0.1.1/pcds/man/runif.tri.Rd | 9 pcds-0.1.1/pcds/man/runifMT.Rd | 12 pcds-0.1.1/pcds/man/runifTe.Rd | 7 pcds-0.1.1/pcds/man/runifTe.onesixth.Rd | 13 pcds-0.1.1/pcds/man/rv.bastri.cent.Rd | 6 pcds-0.1.1/pcds/man/rv.bastriCC.Rd | 5 pcds-0.1.1/pcds/man/rv.bastriCM.Rd | 5 pcds-0.1.1/pcds/man/rv.end.int.Rd | 4 pcds-0.1.1/pcds/man/rv.mid.int.Rd | 4 pcds-0.1.1/pcds/man/rv.tetraCC.Rd | 4 pcds-0.1.1/pcds/man/rv.tetraCM.Rd | 4 pcds-0.1.1/pcds/man/rv.tri.cent.Rd | 6 pcds-0.1.1/pcds/man/rv.triCC.Rd | 4 pcds-0.1.1/pcds/man/rv.triCM.Rd | 5 pcds-0.1.1/pcds/man/rvTe.cent.Rd | 4 pcds-0.1.1/pcds/man/rvTeCM.Rd | 2 pcds-0.1.1/pcds/man/rverts.tri.cent.Rd | 6 pcds-0.1.1/pcds/man/rverts.tri.cent.alt.Rd | 8 pcds-0.1.1/pcds/man/rverts.tri.nd.Rd | 8 pcds-0.1.1/pcds/man/rverts.triCC.Rd | 4 pcds-0.1.1/pcds/man/rverts.triCM.Rd | 4 pcds-0.1.1/pcds/man/seg.tri.supp.Rd | 15 pcds-0.1.1/pcds/man/six.ext.Rd | 22 pcds-0.1.1/pcds/man/summary.Extrema.Rd | 2 pcds-0.1.1/pcds/man/summary.Lines.Rd | 2 pcds-0.1.1/pcds/man/summary.Lines3D.Rd | 2 pcds-0.1.1/pcds/man/summary.PCDs.Rd | 2 pcds-0.1.1/pcds/man/summary.Patterns.Rd | 2 pcds-0.1.1/pcds/man/summary.Planes.Rd | 2 pcds-0.1.1/pcds/man/summary.TriLines.Rd | 4 pcds-0.1.1/pcds/man/summary.Uniform.Rd | 2 283 files changed, 3807 insertions(+), 3612 deletions(-)
Title: Fuzzy Forests
Description: Fuzzy forests, a new algorithm based on random forests,
is designed to reduce the bias seen in random forest feature selection
caused by the presence of correlated features. Fuzzy forests uses
recursive feature elimination random forests to select
features from separate blocks of correlated features where the
correlation within each block of features is high
and the correlation between blocks of features is low.
One final random forest is fit using the surviving features.
This package fits random forests using the 'randomForest' package and
allows for easy use of 'WGCNA' to split features into distinct blocks.
See D. Conn, Ngun, T., C. Ramirez, and G. Li (2019) <doi:10.18637/jss.v091.i09>
for further details.
Author: Daniel Conn [aut, cre],
Tuck Ngun [aut],
Christina M. Ramirez [aut]
Maintainer: Daniel Conn <djconn17@gmail.com>
Diff between fuzzyforest versions 1.0.7 dated 2020-02-05 and 1.0.8 dated 2020-03-25
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/ff.R | 1 - R/tuning_parameters.R | 5 ----- R/wff.R | 32 ++------------------------------ build/partial.rdb |binary man/wff.Rd | 1 + man/wff.formula.Rd | 29 +---------------------------- 8 files changed, 14 insertions(+), 74 deletions(-)
Title: Computing General Equilibrium
Description: Developing general equilibrium models, computing general equilibrium and simulating economic dynamics with structural dynamic models in LI (2019, ISBN: 9787521804225) "General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press".
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu@staff.shu.edu.cn>
Diff between CGE versions 0.3.0 dated 2020-02-01 and 0.3.1 dated 2020-03-25
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- man/CD_A.Rd | 2 +- man/CES_A.Rd | 5 ++++- man/Example7.2.Rd | 32 ++++++++++++++++++++++++++++++++ man/iep.Rd | 2 +- 6 files changed, 46 insertions(+), 11 deletions(-)
Title: Partition/Decomposition of Breeding Values by Paths of
Information
Description: A software that implements a method for partitioning genetic trends to
quantify the sources of genetic gain in breeding programmes.
The partitioning method is described in Garcia-Cortes et al.
(2008) <doi:10.1017/S175173110800205X>. The package includes the
main function AlphaPart for partitioning breeding values and auxiliary
functions for manipulating data and summarizing, visualizing, and saving
results.
Author: Gregor Gorjanc, Jana Obsteter
Maintainer: Jana Obšteter <jana.obsteter@kis.si>
Diff between AlphaPart versions 0.8.0 dated 2020-03-17 and 0.8.1 dated 2020-03-25
DESCRIPTION | 10 MD5 | 28 +- NAMESPACE | 1 NEWS.md |only R/savePlot.plotSummaryAlphaPart.R | 21 - README.md | 58 ++++ build/vignette.rds |binary demo/AlphaPart_deterministic.R | 4 demo/AlphaPart_deterministic_MCMC.R | 4 demo/AlphaPart_stochastic.R | 4 inst/doc/alphapart-vignette.R | 2 inst/doc/alphapart-vignette.html | 213 +++-------------- inst/examples/examples_savePlot.plotsummaryAlphaPart.R | 7 man/AlphaPart.ped.Rd | 6 man/figures |only man/savePlot.Rd | 28 +- 16 files changed, 157 insertions(+), 229 deletions(-)
Title: Tools for Inference in the Presence of a Monotone Likelihood
Description: Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist. These difficulties are related to those arising from logistic and multinomial regression. References for methods are given in the separate function documents.
Author: John E. Kolassa and Juan Zhang
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between PHInfiniteEstimates versions 1.1 dated 2020-03-09 and 1.2 dated 2020-03-25
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 1 + R/bestbeta.R | 9 +++++++-- R/inference.R | 1 + R/newllk.R | 3 +-- R/reduceLR.R | 9 +++++---- R/testp.R | 6 +++--- build/partial.rdb |binary man/testp.Rd | 2 +- 10 files changed, 31 insertions(+), 24 deletions(-)
More information about PHInfiniteEstimates at CRAN
Permanent link
More information about L2DensityGoFtest at CRAN
Permanent link
Title: Compute, Handle, Plot and Model Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<http://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Thibaut Jombart [aut],
Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>),
Rich FitzJohn [aut],
Jun Cai [ctb] (<https://orcid.org/0000-0001-9495-1226>),
Sangeeta Bhatia [ctb],
Jakob Schumacher [ctb],
Juliet R.C. Pulliam [ctb] (<https://orcid.org/0000-0003-3314-8223>)
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between incidence versions 1.7.0 dated 2019-03-14 and 1.7.1 dated 2020-03-25
DESCRIPTION | 9 MD5 | 50 - NEWS.md | 15 R/conversion.R | 10 R/fit.R | 2 R/fit_optim_split.R | 5 R/plot.R | 30 - build/vignette.rds |binary inst/doc/conversions.R | 20 inst/doc/conversions.html | 442 ++++++++------- inst/doc/customize_plot.R | 46 - inst/doc/customize_plot.html | 406 +++++++------- inst/doc/incidence_class.R | 42 - inst/doc/incidence_class.html | 713 ++++++++++++------------- inst/doc/incidence_fit_class.R | 42 - inst/doc/incidence_fit_class.html | 1070 +++++++++++++++++++------------------- inst/doc/overview.R | 44 - inst/doc/overview.html | 818 ++++++++++++++--------------- man/conversions.Rd | 18 man/fit.Rd | 17 man/get_dates.Rd | 3 man/get_fit.Rd | 3 man/incidence.Rd | 71 +- man/plot.incidence.Rd | 23 man/subset.Rd | 3 tests/testthat/test-conversions.R | 6 26 files changed, 2041 insertions(+), 1867 deletions(-)
More information about detectseparation at CRAN
Permanent link
Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an efficient implementation
of the gradient boosting framework from Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>.
This package is its R interface. The package includes efficient linear
model solver and tree learning algorithms. The package can automatically
do parallel computation on a single machine which could be more than 10
times faster than existing gradient boosting packages. It supports
various objective functions, including regression, classification and ranking.
The package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen [aut],
Tong He [aut, cre],
Michael Benesty [aut],
Vadim Khotilovich [aut],
Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>),
Hyunsu Cho [aut],
Kailong Chen [aut],
Rory Mitchell [aut],
Ignacio Cano [aut],
Tianyi Zhou [aut],
Mu Li [aut],
Junyuan Xie [aut],
Min Lin [aut],
Yifeng Geng [aut],
Yutian Li [aut],
XGBoost contributors [cph] (base XGBoost implementation)
Maintainer: Tong He <hetong007@gmail.com>
Diff between xgboost versions 1.0.0.1 dated 2020-03-23 and 1.0.0.2 dated 2020-03-25
DESCRIPTION | 10 MD5 | 24 inst/doc/discoverYourData.html | 854 +++++++++++++++---------------- inst/doc/xgboost.pdf |binary inst/doc/xgboostPresentation.html | 1022 ++++++++++++++++++-------------------- inst/doc/xgboostfromJSON.R | 22 inst/doc/xgboostfromJSON.Rmd | 22 inst/doc/xgboostfromJSON.html | 782 +++++++++++++++-------------- man/agaricus.test.Rd | 6 man/agaricus.train.Rd | 6 src/src/common/io.cc | 4 tests/testthat/test_helpers.R | 12 vignettes/xgboostfromJSON.Rmd | 22 13 files changed, 1406 insertions(+), 1380 deletions(-)
Title: Spherical Principal Curves
Description: Fitting a principal curve to data lying in the spherical surface.
This package provides principal circle, principal geodesic analysis, Hauberg's
principal curves, and spherical principal curves. Moreover, it partially offers locally
defined principal geodesics which are currently under study. The detailed procedure
is described in Jang-Hyun Kim, Jongmin Lee and Hee-Seok Oh (2020) <arXiv:2003.02578>.
Author: Jongmin Lee [aut, cre],
Jang-Hyun Kim [ctb],
Hee-Seok Oh [aut]
Maintainer: Jongmin Lee <jongminlee9218@gmail.com>
Diff between spherepc versions 0.1.2 dated 2020-03-24 and 0.1.3 dated 2020-03-25
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 7 ++++++- man/Earthquake.Rd | 6 +++--- man/ExtrinsicMean.Rd | 8 ++++---- man/GenerateCircle.Rd | 4 ++-- man/IntrinsicMean.Rd | 8 ++++---- man/PrincipalCircle.Rd | 21 ++++++++++----------- man/SPC.Hauberg.Rd | 8 ++------ man/SPC.Rd | 8 ++------ 10 files changed, 45 insertions(+), 49 deletions(-)
Title: Sample Size Calculation for the Comparison of Means or
Proportions in Phase III Clinical Trials
Description: There are four categories of Phase III clinical trials according to different research goals, including (1) Testing for equality, (2) Superiority trial, (3) Non-inferiority trial, and (4) Equivalence trial. This package aims to help researchers to calculate sample size when comparing means or proportions in Phase III clinical trials with different research goals.
Author: Hongchao Qi, Fang Zhu
Maintainer: Hongchao Qi <hcqi.biostat@gmail.com>
Diff between SampleSize4ClinicalTrials versions 0.2.1 dated 2020-02-27 and 0.2.2 dated 2020-03-25
DESCRIPTION | 6 ++-- MD5 | 10 +++--- R/ssc_meancomp.R | 75 +++++++++++++++++++++++++++----------------------- R/ssc_propcomp.R | 77 +++++++++++++++++++++++++++------------------------- man/ssc_meancomp.Rd | 27 +++++++++--------- man/ssc_propcomp.Rd | 26 ++++++++--------- 6 files changed, 116 insertions(+), 105 deletions(-)
More information about SampleSize4ClinicalTrials at CRAN
Permanent link
Title: Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive
Models
Description: Rapid, simulation-based exact (restricted) likelihood ratio tests
for testing the presence of variance components/nonparametric terms for
models fit with nlme::lme(),lme4::lmer(), lmeTest::lmer(), gamm4::gamm4(),
mgcv::gamm() and SemiPar::spm().
Author: Fabian Scheipl [aut, cre] (<https://orcid.org/0000-0001-8172-3603>),
Ben Bolker [ctb] (<https://orcid.org/0000-0002-2127-0443>)
Maintainer: Fabian Scheipl <fabian.scheipl@stat.uni-muenchen.de>
Diff between RLRsim versions 3.1-3 dated 2016-11-04 and 3.1-6 dated 2020-03-25
DESCRIPTION | 19 +++++++++++-------- MD5 | 27 ++++++++++++++------------- NAMESPACE | 3 ++- NEWS | 2 +- R/LRTSim.R | 11 +++++------ R/RcppExports.R | 2 +- R/exactLRT.R | 4 ++-- R/exactRLRT.R | 29 +++++++++++++++++++---------- man/LRTSim.Rd | 33 +++++++++++++++++++++------------ man/RLRsim-package.Rd | 3 +-- man/exactLRT.Rd | 22 +++++++++++++++------- man/exactRLRT.Rd | 34 +++++++++++++++++++++++----------- man/extract.lmeDesign.Rd | 1 - src/RcppExports.cpp | 2 +- src/init.c |only 15 files changed, 116 insertions(+), 76 deletions(-)
Title: Cancer Registry Data Analysis and Visualisation
Description: Tools for basic and advance cancer statistics and graphics.
Groups individual data, merges registry data and population data, calculates age-specific rate, age-standardized rate, cumulative risk, estimated annual percentage rate with standards error. Creates graphics across variable and
time, such as age-specific trends, bar chart and period-cohort trends.
Author: Mathieu Laversanne [aut, cre],
Jerome Vignat [aut],
Cancer Surveillance Unit [cph]
Maintainer: Mathieu Laversanne <laversannem@iarc.fr>
Diff between Rcan versions 1.3.80 dated 2019-11-29 and 1.3.81 dated 2020-03-25
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- R/csu_cumrisk.R | 78 ++++++++++++++++++++++++++-------------------------- R/csu_group_cases.R | 11 +++++++ R/helper.r | 62 ++++++++++++++++++++++------------------- build/partial.rdb |binary man/csu_asr.Rd | 6 ++-- 7 files changed, 98 insertions(+), 79 deletions(-)
Title: Local Regression, Likelihood and Density Estimation
Description: Local regression, likelihood and density estimation methods as described in the 1999 book by Loader.
Author: Catherine Loader [aut],
Jiayang Sun [ctb],
Lucent Technologies [cph],
Andy Liaw [cre]
Maintainer: Andy Liaw <andy_liaw@merck.com>
Diff between locfit versions 1.5-9.2 dated 2020-03-23 and 1.5-9.4 dated 2020-03-25
DESCRIPTION | 28 ++++++++++----- MD5 | 19 +++++----- NAMESPACE | 7 +++ R/locfit.r | 80 ++++++++++++++++++++++++-------------------- README |only man/lf.Rd | 2 + man/livmet.Rd | 2 - man/locfit.raw.Rd | 3 + man/panel.locfit.Rd | 93 +++++++++++++++++++++++++++++----------------------- src/S_enter.c | 10 ++--- src/scb.c | 5 ++ 11 files changed, 147 insertions(+), 102 deletions(-)
Title: Interface to the 'HDF5' Binary Data Format
Description: 'HDF5' is a data model, library and file format for storing
and managing large amounts of data. This package provides a nearly
feature complete, object oriented wrapper for the 'HDF5' API
<https://support.hdfgroup.org/HDF5/doc/RM/RM_H5Front.html> using R6 classes.
Additionally, functionality is added so that 'HDF5' objects behave very
similar to their corresponding R counterparts.
Author: Holger Hoefling [aut, cre],
Mario Annau [aut],
Novartis Institute for BioMedical Research (NIBR) [cph]
Maintainer: Holger Hoefling <hhoeflin@gmail.com>
Diff between hdf5r versions 1.3.1 dated 2020-01-10 and 1.3.2 dated 2020-03-25
DESCRIPTION | 6 MD5 | 361 ++++++++++++++++++++++-- NEWS.md | 5 R/H5constants.R | 9 README.md | 4 configure | 104 ++++++ configure.ac | 19 + inst/CWrappers_1.12.0 |only inst/doc/hdf5r.html | 4 src/1_12_0 |only src/Makevars.in | 4 tests/testthat/test-reference.R | 1 tests/testthat/test-zzz-Attribute.R | 10 tests/testthat/test-zzz-DataSet-IO-NA.R | 2 tests/testthat/test-zzz-DataSet-IO.R | 10 tests/testthat/test-zzz-DataSet-Select-Subset.R | 254 ++++++++-------- tests/testthat/test-zzz-DataSet-extend.R | 8 tests/testthat/test-zzz-DataSet.R | 12 tests/testthat/test-zzz-H5File-Subset.R | 4 tests/testthat/test-zzz-H5File.R | 42 +- tests/testthat/test-zzz-H5Group.R | 34 +- tests/testthat/test-zzz-io.R | 2 tests/testthat/test-zzz-vlen.R | 6 23 files changed, 668 insertions(+), 233 deletions(-)
Title: Tables, Labels and Some Useful Functions from Spreadsheets and
'SPSS' Statistics
Description: Package computes and displays tables with support for 'SPSS'-style
labels, multiple and nested banners, weights, multiple-response variables
and significance testing. There are facilities for nice output of tables
in 'knitr', 'Shiny', '*.xlsx' files, R and 'Jupyter' notebooks. Methods
for labelled variables add value labels support to base R functions and to
some functions from other packages. Additionally, the package brings
popular data transformation functions from 'SPSS' Statistics and 'Excel':
'RECODE', 'COUNT', 'COMPUTE', 'DO IF', 'COUNTIF', 'VLOOKUP' and etc.
These functions are very useful for data processing in marketing research
surveys. Package intended to help people to move data
processing from 'Excel' and 'SPSS' to R.
Author: Gregory Demin [aut, cre],
Sebastian Jeworutzki [ctb] (<https://orcid.org/0000-0002-2671-5253>)
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.10.1 dated 2019-11-27 and 0.10.2 dated 2020-03-25
DESCRIPTION | 12 MD5 | 254 NAMESPACE | 17 NEWS | 10 R/apply_labels.R | 98 R/as_hux.R | 494 R/count_if.R | 211 R/criteria_functions.R | 65 R/custom_tables.R | 22 R/labels.R | 1 R/qc.R | 8 R/recode.R | 32 R/significance_cpct.R | 8 R/split_by.R | 7 R/subtotal.R | 37 R/sum.R | 16 R/xl_write.R | 21 build/vignette.rds |binary inst/doc/examples.R |only inst/doc/examples.Rmd |only inst/doc/examples.html |only inst/doc/labels-support.R | 266 inst/doc/labels-support.html | 1384 - inst/doc/tables-with-labels.R | 950 - inst/doc/tables-with-labels.html |12198 ++++++------- inst/doc/xlsx-export.R | 146 inst/doc/xlsx-export.html | 1526 - man/apply_labels.Rd | 4 man/count_if.Rd | 209 man/criteria.Rd | 5 man/if_na.Rd | 4 man/net.Rd | 18 man/product_test.Rd | 6 man/qc.Rd | 3 man/recode.Rd | 13 man/split_by.Rd | 3 man/sum_row.Rd | 16 man/tables.Rd | 8 man/var_lab.Rd | 1 man/vars.Rd | 4 man/xl_write.Rd | 17 tests/testthat.R | 12 tests/testthat/rds/as_hux1.rds |binary tests/testthat/rds/as_hux10.rds |binary tests/testthat/rds/as_hux11.rds |binary tests/testthat/rds/as_hux12.rds |binary tests/testthat/rds/as_hux12single.rds |binary tests/testthat/rds/as_hux12single2.rds |binary tests/testthat/rds/as_hux13.rds |binary tests/testthat/rds/as_hux14.rds |binary tests/testthat/rds/as_hux14_2.rds |binary tests/testthat/rds/as_hux15.rds |binary tests/testthat/rds/as_hux16.rds |binary tests/testthat/rds/as_hux17.rds |binary tests/testthat/rds/as_hux18.rds |binary tests/testthat/rds/as_hux19.rds |binary tests/testthat/rds/as_hux1_caption.rds |binary tests/testthat/rds/as_hux2.rds |binary tests/testthat/rds/as_hux2empty1.rds |binary tests/testthat/rds/as_hux2single1.rds |binary tests/testthat/rds/as_hux3_no_rowgroups_caption.rds |binary tests/testthat/rds/cro_mean_out.txt | 14 tests/testthat/rds/print_etable.txt | 46 tests/testthat/rds/print_etable_2.txt | 92 tests/testthat/rds/print_etable_2_caption.txt | 46 tests/testthat/rds/print_etable_caption.txt | 46 tests/testthat/rds/print_etable_caption_raw.txt | 38 tests/testthat/rds/print_etable_commented_1.txt | 92 tests/testthat/rds/print_etable_commented_2.txt | 46 tests/testthat/rds/print_etable_commented_3.txt | 92 tests/testthat/rds/print_etable_commented_caption_1.txt | 92 tests/testthat/rds/print_etable_custom_label.txt | 46 tests/testthat/rds/print_etable_digits2.txt | 46 tests/testthat/rds/print_etable_digits2_2.txt | 92 tests/testthat/rds/print_etable_raw.txt | 36 tests/testthat/rds/print_etable_rnotebook.txt | 410 tests/testthat/rds/print_etable_rnotebook_caption.txt | 414 tests/testthat/rds/print_etable_single_column.txt | 40 tests/testthat/rds/print_etable_unrounded.txt | 46 tests/testthat/rds/print_etable_unrounded2.txt | 92 tests/testthat/rds/print_etable_zero.txt | 2 tests/testthat/rds/print_etable_zero_columns.txt | 2 tests/testthat/rds/print_etable_zero_columns_commented.txt | 2 tests/testthat/rds/print_etable_zero_commented.txt | 2 tests/testthat/rds/print_etable_zero_rows.txt | 12 tests/testthat/rds/print_etable_zero_rows_commented.txt | 12 tests/testthat/rds/print_intermediate_table.txt | 2 tests/testthat/rds/print_labelled1.txt | 52 tests/testthat/rds/print_labelled2.txt | 54 tests/testthat/rds/print_labelled3.txt | 54 tests/testthat/rds/print_labelled4.txt | 112 tests/testthat/rds/print_labelled5.txt | 6 tests/testthat/rds/significance_cases1.rds |binary tests/testthat/rds/significance_cases10.rds |binary tests/testthat/rds/significance_cases11.rds |binary tests/testthat/rds/significance_cases12.rds |binary tests/testthat/rds/significance_cases13.rds |binary tests/testthat/rds/significance_cases14.rds |binary tests/testthat/rds/significance_cases15.rds |binary tests/testthat/rds/significance_cases16.rds |binary tests/testthat/rds/significance_cases17.rds |binary tests/testthat/rds/significance_cases2.rds |binary tests/testthat/rds/significance_cases3.rds |binary tests/testthat/rds/significance_cases4.rds |binary tests/testthat/rds/significance_cases5.rds |binary tests/testthat/rds/significance_cases6.rds |binary tests/testthat/rds/significance_cases7.rds |binary tests/testthat/rds/significance_cases8.rds |binary tests/testthat/rds/significance_cases9.rds |binary tests/testthat/rds/str_labelled1.txt | 4 tests/testthat/rds/str_labelled2.txt | 6 tests/testthat/rds/str_labelled7.txt | 6 tests/testthat/test_count_if.R | 4 tests/testthat/test_criteria_functions.R | 2 tests/testthat/test_custom_tables.R | 29 tests/testthat/test_custom_tables_sig.R | 3 tests/testthat/test_dichotomy.R | 160 tests/testthat/test_huxtable.R | 11 tests/testthat/test_labels.R | 9 tests/testthat/test_na_if.R | 16 tests/testthat/test_recode.R | 10 tests/testthat/test_recode_with_labels.R | 5 tests/testthat/test_siginificance_cases.R | 79 tests/testthat/test_significance_cpct.R | 6 tests/testthat/test_split_labels.R | 719 tests/testthat/test_subtotal.R | 86 tests/testthat/test_sum_if_excel_examples.R | 26 tests/testthat/test_text_expand.R | 1 tests/testthat/test_xl_write.R | 14 vignettes/examples.Rmd |only 130 files changed, 10796 insertions(+), 10644 deletions(-)
Title: Plotting and Comparing Means with Violin Plots
Description: Produces violin plots with optional mean comparison with Tukey's honest significant difference and linear regression. This package aims to be a simple and quick visualization tool for comparing means and assessing trends of categorical factors.
Author: Jefferson Paril [aut, cre] (<https://orcid.org/0000-0002-5693-4123>)
Maintainer: Jefferson Paril <jeffersonparil@gmail.com>
Diff between violinplotter versions 1.0.0 dated 2020-03-24 and 1.0.1 dated 2020-03-25
violinplotter-1.0.0/violinplotter/man/mean_comparison_HSD.Rd |only violinplotter-1.0.0/violinplotter/man/parse_formula.Rd |only violinplotter-1.0.0/violinplotter/man/plot_regression_line.Rd |only violinplotter-1.0.0/violinplotter/man/plot_violin_1x.Rd |only violinplotter-1.0.1/violinplotter/DESCRIPTION | 6 violinplotter-1.0.1/violinplotter/MD5 | 20 +- violinplotter-1.0.1/violinplotter/NAMESPACE | 4 violinplotter-1.0.1/violinplotter/NEWS.md | 9 + violinplotter-1.0.1/violinplotter/R/mean_comparison_HSD.R | 57 +++---- violinplotter-1.0.1/violinplotter/R/parse_formula.R | 45 +++--- violinplotter-1.0.1/violinplotter/R/plot_regression_line.R | 59 +++----- violinplotter-1.0.1/violinplotter/R/plot_violin_1x.R | 73 ++++------ violinplotter-1.0.1/violinplotter/README.md | 7 13 files changed, 134 insertions(+), 146 deletions(-)
Title: Request <https://openblender.io> API Services
Description: Interface to make HTTP requests to 'OpenBlender' API services. Go to <https://openblender.io> for more information.
Author: Open Blender Inc. [cph],
Daniel V. Pinacho [aut, cre]
Maintainer: Daniel V. Pinacho <danielvpinacho@gmail.com>
Diff between openblender versions 0.4.6 dated 2020-03-05 and 0.5.6 dated 2020-03-25
DESCRIPTION | 6 ++-- MD5 | 10 +++---- R/get_observations.R | 20 ++++++++++++++- R/openblender.R | 3 ++ R/utils.R | 5 +++ tests/testthat.R | 65 +++++++++++++++++++++++++++++---------------------- 6 files changed, 70 insertions(+), 39 deletions(-)
Title: Named Capture to Data Tables
Description: User-friendly functions for extracting a data
table (row for each match, column for each group)
from non-tabular text data using regular expressions,
and for melting columns that match a regular expression.
Patterns are defined using a readable syntax
that makes it easy to build complex patterns
in terms of simpler, re-usable sub-patterns.
Named R arguments are translated to column names
in the output; capture groups without names are used
internally in order to provide a standard interface
to three regular expression C libraries (PCRE, RE2, ICU).
Output can also include numeric columns via
user-specified type conversion functions.
RE2 engine (re2r package) was removed from CRAN in Mar 2020
so must be installed from github.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between nc versions 2020.2.27 dated 2020-03-04 and 2020.3.23 dated 2020-03-25
DESCRIPTION | 9 MD5 | 25 - NEWS | 9 inst/doc/v1-capture-first.html | 4 inst/doc/v3-capture-melt.html | 2 inst/test_engines.R |only tests/testthat/test-CRAN-all.R | 225 ++++++------- tests/testthat/test-CRAN-df.R | 562 ++++++++++++++++------------------ tests/testthat/test-CRAN-dt.R | 139 +++----- tests/testthat/test-CRAN-errors.R | 268 +++++++--------- tests/testthat/test-CRAN-melt.R | 221 ++++++------- tests/testthat/test-CRAN-multiple.R | 526 +++++++++++++++---------------- tests/testthat/test-CRAN-quantifier.R | 96 ++--- tests/testthat/test-CRAN-vec.R | 532 +++++++++++++++----------------- 14 files changed, 1289 insertions(+), 1329 deletions(-)
Title: Combination Matrix Axis for 'ggplot2' to Create 'UpSet' Plots
Description: Replace the standard x-axis in 'ggplots' with a combination matrix
to visualize complex set overlaps. 'UpSet' has introduced a new way to visualize
the overlap of sets as an alternative to Venn diagrams.
This package provides a simple way to produce such plots using 'ggplot2'.
In addition it can convert any categorical axis into a combination
matrix axis.
Author: Constantin Ahlmann-Eltze [aut, cre]
(<https://orcid.org/0000-0002-3762-068X>)
Maintainer: Constantin Ahlmann-Eltze <artjom31415@googlemail.com>
Diff between ggupset versions 0.1.0 dated 2019-03-06 and 0.2.0 dated 2020-03-25
DESCRIPTION | 10 MD5 | 34 +-- NEWS.md | 5 R/axis_combmatrix.R | 10 R/data.R | 19 + R/scale_upset.R | 7 README.md | 329 ++++++++++++++++++++++-------- data/gene_pathway_membership.rda |only man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |only man/figures/README-unnamed-chunk-13-2.png |only man/figures/README-unnamed-chunk-14-1.png |only man/figures/README-unnamed-chunk-15-1.png |only man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/figures/README-violinexample-1.png |binary man/gene_pathway_membership.Rd |only 21 files changed, 311 insertions(+), 103 deletions(-)
Title: Bayesian Estimation of an Exploratory Deterministic Input, Noisy
and Gate Model
Description: Perform a Bayesian estimation of the exploratory
deterministic input, noisy and gate (EDINA)
cognitive diagnostic model described by Chen et al. (2018)
<doi:10.1007/s11336-017-9579-4>.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Steven Andrew Culpepper [aut, cph]
(<https://orcid.org/0000-0003-4226-6176>),
Jeffrey A. Douglas [aut]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between edina versions 0.1.0 dated 2020-03-23 and 0.1.1 dated 2020-03-25
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 12 +++++++++++- README.md | 8 ++++++++ inst/include/edina_meat.h | 34 ++++++++++++++++++++++++---------- 5 files changed, 50 insertions(+), 18 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data
analysis, drake rebuilds intermediate data objects when their
dependencies change, and it skips work when the results are already up
to date. Not every execution starts from scratch, there is native
support for parallel and distributed computing, and completed projects
have tangible evidence that they are reproducible. Extensive
documentation, from beginner-friendly tutorials to practical examples
and more, is available at the reference website
<https://docs.ropensci.org/drake/> and the online manual
<https://books.ropensci.org/drake/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Ellis Hughes [ctb],
Matthew Mark Strasiotto [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.11.0 dated 2020-03-01 and 7.12.0 dated 2020-03-25
drake-7.11.0/drake/R/drake_deps.R |only drake-7.11.0/drake/R/drake_deps_ht.R |only drake-7.12.0/drake/DESCRIPTION | 8 drake-7.12.0/drake/MD5 | 182 +++-- drake-7.12.0/drake/NAMESPACE | 6 drake-7.12.0/drake/NEWS.md | 40 + drake-7.12.0/drake/R/backend_clustermq.R | 12 drake-7.12.0/drake/R/backend_future.R | 16 drake-7.12.0/drake/R/backend_loop.R | 2 drake-7.12.0/drake/R/build_times.R | 7 drake-7.12.0/drake/R/cache.R | 168 ++--- drake-7.12.0/drake/R/clean.R | 55 - drake-7.12.0/drake/R/create_drake_graph.R | 7 drake-7.12.0/drake/R/create_drake_spec.R | 40 - drake-7.12.0/drake/R/decorate_storr.R | 48 + drake-7.12.0/drake/R/deprecated.R | 223 +++++- drake-7.12.0/drake/R/deps.R | 11 drake-7.12.0/drake/R/drake_build.R | 14 drake-7.12.0/drake/R/drake_config.R | 189 ++--- drake-7.12.0/drake/R/drake_example.R | 7 drake-7.12.0/drake/R/drake_graph_info.R | 17 drake-7.12.0/drake/R/drake_history.R | 4 drake-7.12.0/drake/R/drake_meta_.R | 115 +++ drake-7.12.0/drake/R/drake_plan.R | 12 drake-7.12.0/drake/R/drake_plan_helpers.R | 44 - drake-7.12.0/drake/R/dynamic.R | 43 - drake-7.12.0/drake/R/handle_triggers.R | 17 drake-7.12.0/drake/R/hpc.R | 6 drake-7.12.0/drake/R/igraph.R | 18 drake-7.12.0/drake/R/lifecycle.R | 2 drake-7.12.0/drake/R/local_build.R | 64 +- drake-7.12.0/drake/R/logger.R | 17 drake-7.12.0/drake/R/make.R | 131 +--- drake-7.12.0/drake/R/manage_memory.R | 20 drake-7.12.0/drake/R/outdated.R | 10 drake-7.12.0/drake/R/predict_runtime.R | 10 drake-7.12.0/drake/R/priority_queue.R | 2 drake-7.12.0/drake/R/process_imports.R | 8 drake-7.12.0/drake/R/r_make.R | 19 drake-7.12.0/drake/R/rstudio.R | 15 drake-7.12.0/drake/R/s3_drake_deps.R |only drake-7.12.0/drake/R/s3_drake_deps_ht.R |only drake-7.12.0/drake/R/s3_drake_settings.R |only drake-7.12.0/drake/R/s3_drake_triggers.R |only drake-7.12.0/drake/R/sankey_drake_graph.R | 12 drake-7.12.0/drake/R/store_outputs.R | 53 + drake-7.12.0/drake/R/transform_plan.R | 78 +- drake-7.12.0/drake/R/utils.R | 315 +++------ drake-7.12.0/drake/R/vis_drake_graph.R | 4 drake-7.12.0/drake/R/walk_code.R | 57 + drake-7.12.0/drake/R/zzz.R | 49 - drake-7.12.0/drake/build/drake.pdf |binary drake-7.12.0/drake/inst/WORDLIST | 2 drake-7.12.0/drake/man/build_drake_graph.Rd | 6 drake-7.12.0/drake/man/clean.Rd | 5 drake-7.12.0/drake/man/drake_build.Rd | 2 drake-7.12.0/drake/man/drake_cancelled.Rd |only drake-7.12.0/drake/man/drake_config.Rd | 17 drake-7.12.0/drake/man/drake_debug.Rd | 2 drake-7.12.0/drake/man/drake_deps.Rd | 2 drake-7.12.0/drake/man/drake_deps_ht.Rd | 2 drake-7.12.0/drake/man/drake_done.Rd |only drake-7.12.0/drake/man/drake_failed.Rd |only drake-7.12.0/drake/man/drake_progress.Rd |only drake-7.12.0/drake/man/drake_running.Rd |only drake-7.12.0/drake/man/drake_settings.Rd |only drake-7.12.0/drake/man/drake_triggers.Rd |only drake-7.12.0/drake/man/failed.Rd | 32 - drake-7.12.0/drake/man/make.Rd | 29 drake-7.12.0/drake/man/new_drake_deps.Rd | 2 drake-7.12.0/drake/man/new_drake_deps_ht.Rd | 2 drake-7.12.0/drake/man/new_drake_settings.Rd |only drake-7.12.0/drake/man/new_drake_triggers.Rd |only drake-7.12.0/drake/man/progress.Rd | 27 drake-7.12.0/drake/man/render_sankey_drake_graph.Rd | 4 drake-7.12.0/drake/man/running.Rd | 31 drake-7.12.0/drake/man/sankey_drake_graph.Rd | 4 drake-7.12.0/drake/man/show_source.Rd | 2 drake-7.12.0/drake/man/target.Rd | 68 ++ drake-7.12.0/drake/tests/testthat/helper-checkers.R | 2 drake-7.12.0/drake/tests/testthat/helper-testrun.R | 20 drake-7.12.0/drake/tests/testthat/test-1-interactive.R | 29 drake-7.12.0/drake/tests/testthat/test-1-s3.R |only drake-7.12.0/drake/tests/testthat/test-2-checks.R | 2 drake-7.12.0/drake/tests/testthat/test-3-lazy.R | 8 drake-7.12.0/drake/tests/testthat/test-3-rstudio.R | 4 drake-7.12.0/drake/tests/testthat/test-4-flow.R | 25 drake-7.12.0/drake/tests/testthat/test-4-rng.R | 22 drake-7.12.0/drake/tests/testthat/test-6-analysis.R | 79 +- drake-7.12.0/drake/tests/testthat/test-6-hpc.R | 46 - drake-7.12.0/drake/tests/testthat/test-6-memory.R | 14 drake-7.12.0/drake/tests/testthat/test-6-plans.R | 14 drake-7.12.0/drake/tests/testthat/test-7-deprecate.R | 18 drake-7.12.0/drake/tests/testthat/test-7-dsl.R | 124 +++ drake-7.12.0/drake/tests/testthat/test-7-files.R | 33 - drake-7.12.0/drake/tests/testthat/test-8-cache.R | 84 +- drake-7.12.0/drake/tests/testthat/test-8-decorated-storr.R | 12 drake-7.12.0/drake/tests/testthat/test-9-dynamic.R | 415 ++++++++++++- drake-7.12.0/drake/tests/testthat/test-9-future.R | 2 drake-7.12.0/drake/tests/testthat/test-zzz-callr.R | 7 100 files changed, 2110 insertions(+), 1266 deletions(-)
Title: Dynamic Bayesian Network Learning and Inference
Description: Learning and inference over dynamic Bayesian networks of arbitrary
Markovian order. Extends some of the functionality offered by the 'bnlearn'
package to learn the networks from data and perform exact inference.
It offers a modification of Trabelsi (2013) <doi:10.1007/978-3-642-41398-8_34>
dynamic max-min hill climbing algorithm for structure learning and
the possibility to perform forecasts of arbitrary length. A tool for
visualizing the structure of the net is also provided via the 'visNetwork' package.
Author: David Quesada [aut, cre],
Gabriel Valverde [ctb]
Maintainer: David Quesada <dkesada@gmail.com>
Diff between dbnR versions 0.3.3 dated 2020-03-20 and 0.3.4 dated 2020-03-25
DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- NEWS.md | 4 ++++ R/dbn_visualization.R | 9 +++++++-- 4 files changed, 21 insertions(+), 11 deletions(-)
Title: Search and Download Data from the Swiss Federal Statistical
Office (BFS)
Description: Search and download data from the Swiss Federal Statistical Office <https://www.bfs.admin.ch/>.
Author: Félix Luginbuhl [aut, cre]
Maintainer: Félix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between BFS versions 0.2.4 dated 2020-03-16 and 0.2.5 dated 2020-03-25
DESCRIPTION | 8 - MD5 | 14 +- R/main.R | 274 +++++++++++++++++++++++++++++++++++++++++------- README.md | 110 ++++++++++++++----- man/bfs_get_dataset.Rd | 42 ++++--- man/bfs_get_metadata.Rd | 36 ++++-- man/bfs_search.Rd | 17 ++ tests/testthat/tests.R | 2 8 files changed, 395 insertions(+), 108 deletions(-)
Title: Blind Source Separation Methods Based on Joint Diagonalization
and Some BSS Performance Criteria
Description: Cardoso's JADE algorithm as well as his functions for joint diagonalization are ported to R. Also several other blind source separation (BSS) methods, like AMUSE and SOBI, and some criteria for performance evaluation of BSS algorithms, are given. The package is described in Miettinen, Nordhausen and Taskinen (2017) <doi:10.18637/jss.v076.i02>.
Author: Klaus Nordhausen [aut, cre] (<https://orcid.org/0000-0002-3758-8501>),
Jean-Francois Cardoso [aut],
Jari Miettinen [aut] (<https://orcid.org/0000-0002-3270-7014>),
Hannu Oja [aut],
Esa Ollila [aut],
Sara Taskinen [aut] (<https://orcid.org/0000-0001-9470-7258>)
Maintainer: Klaus Nordhausen <klaus.nordhausen@tuwien.ac.at>
Diff between JADE versions 2.0-2 dated 2019-08-19 and 2.0-3 dated 2020-03-25
DESCRIPTION | 26 ++++++-- MD5 | 14 ++-- R/AMUSE.R | 2 R/k_JADE.R | 140 ++++++++++++++++++++++----------------------- build/partial.rdb |binary build/vignette.rds |binary inst/ChangeLog | 4 + inst/doc/JADE-BSSasymp.pdf |binary 8 files changed, 102 insertions(+), 84 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-11 2.0.2
2015-07-11 2.0.1
2013-11-04 2.0
2013-05-08 1.2.1
2012-04-03 1.1
2012-02-20 1.0
Title: Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Description: Reading and writing data stored by some versions of
'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',
and for reading and writing some 'dBase' files.
Author: R Core Team [aut, cph, cre],
Roger Bivand [ctb, cph],
Vincent J. Carey [ctb, cph],
Saikat DebRoy [ctb, cph],
Stephen Eglen [ctb, cph],
Rajarshi Guha [ctb, cph],
Swetlana Herbrandt [ctb],
Nicholas Lewin-Koh [ctb, cph],
Mark Myatt [ctb, cph],
Michael Nelson [ctb],
Ben Pfaff [ctb],
Brian Quistorff [ctb],
Frank Warmerdam [ctb, cph],
Stephen Weigand [ctb, cph],
Free Software Foundation, Inc. [cph]
Maintainer: R Core Team <R-core@R-project.org>
Diff between foreign versions 0.8-76 dated 2020-03-03 and 0.8-77 dated 2020-03-25
ChangeLog | 4 + DESCRIPTION | 10 +-- MD5 | 8 +- tests/spss.Rout.save | 12 ++-- tests/stata.Rout.save | 135 +++++++++++++++++++++++++------------------------- 5 files changed, 88 insertions(+), 81 deletions(-)
Title: Functions for Classification
Description: Various functions for classification, including k-nearest
neighbour, Learning Vector Quantization and Self-Organizing Maps.
Author: Brian Ripley [aut, cre, cph],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between class versions 7.3-15 dated 2019-01-01 and 7.3-16 dated 2020-03-25
DESCRIPTION | 8 ++++---- LICENCE.note | 8 ++++---- MD5 | 10 ++++++---- inst/po/en@quot/LC_MESSAGES/R-class.mo |binary inst/po/it |only po/R-class.pot | 4 ++-- po/R-it.po |only 7 files changed, 16 insertions(+), 14 deletions(-)
Title: Import Various Northern and Southern Hemisphere Climate Indices
Description: Downloads Southern Oscillation Index, Oceanic Nino
Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation
and Arctic Oscillation. Data sources are described in the README file.
Author: Sam Albers [aut, cre] (<https://orcid.org/0000-0002-9270-7884>),
Elio Campitelli [ctb] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Sam Albers <sam.albers@gmail.com>
Diff between rsoi versions 0.5.1 dated 2020-01-14 and 0.5.2 dated 2020-03-25
DESCRIPTION | 8 ++++---- MD5 | 40 +++++++++++++++++++++------------------- NAMESPACE | 1 + NEWS.md | 3 +++ R/download-aao.R | 18 ++++++++++-------- R/download-ao.R | 4 +++- R/download-oni.R | 3 +++ R/download-pdo.R |only README.md | 28 ++++++++++++++++------------ man/download_aao.Rd | 11 ++++++----- man/download_ao.Rd | 3 ++- man/download_enso.Rd | 2 +- man/download_mei.Rd | 2 +- man/download_nao.Rd | 2 +- man/download_npgo.Rd | 2 +- man/download_oni.Rd | 2 +- man/download_pdo.Rd |only man/download_soi.Rd | 2 +- man/figures/plot-1.png |binary man/rsoi-package.Rd | 3 ++- tests/testthat/helper.R | 9 +++++---- tests/testthat/test_download_.R | 6 +++--- 22 files changed, 85 insertions(+), 64 deletions(-)
Title: Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Description: The Radiant Multivariate menu includes interfaces for perceptual
mapping, factor analysis, cluster analysis, and conjoint analysis. The
application extends the functionality in radiant.data.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.multivariate versions 0.9.9.1 dated 2019-05-16 and 1.3.5 dated 2020-03-25
DESCRIPTION | 23 - MD5 | 135 +++--- NAMESPACE | 13 NEWS.md | 24 + R/aaa.R | 6 R/conjoint.R | 41 -- R/full_factor.R | 131 +++++- R/hclus.R | 82 ++-- R/kclus.R | 225 ++++++----- R/mds.R | 30 - R/pre_factor.R | 65 ++- R/prmap.R | 85 +++- R/radiant.R | 1 README.md | 10 inst/app/global.R | 8 inst/app/server.R | 16 inst/app/tools/analysis/conjoint_ui.R | 46 -- inst/app/tools/analysis/full_factor_ui.R | 65 +-- inst/app/tools/analysis/hclus_ui.R | 84 ++-- inst/app/tools/analysis/kclus_ui.R | 78 +-- inst/app/tools/analysis/mds_ui.R | 37 - inst/app/tools/analysis/pre_factor_ui.R | 45 -- inst/app/tools/analysis/prmap_ui.R | 61 +- inst/app/tools/help/conjoint.md | 8 inst/app/tools/help/figures/full_factor_summary.png |binary inst/app/tools/help/figures/full_factor_summary_shopping.png |binary inst/app/tools/help/figures/hclus_dendro.png |binary inst/app/tools/help/figures/hclus_scree.png |binary inst/app/tools/help/figures/pre_factor_summary.png |binary inst/app/tools/help/figures/prmap_summary.png |binary inst/app/tools/help/full_factor.md | 14 inst/app/tools/help/hclus.md | 10 inst/app/tools/help/kclus.md | 13 inst/app/tools/help/mds.md | 4 inst/app/tools/help/pre_factor.md | 8 inst/app/tools/help/prmap.md | 10 inst/app/www/js/store.js | 2 man/carpet.Rd | 4 man/city.Rd | 4 man/city2.Rd | 4 man/clean_loadings.Rd | 3 man/computer.Rd | 4 man/conjoint.Rd | 14 man/full_factor.Rd | 16 man/hclus.Rd | 16 man/kclus.Rd | 23 - man/mds.Rd | 15 man/movie.Rd | 4 man/mp3.Rd | 4 man/plot.conjoint.Rd | 11 man/plot.full_factor.Rd | 3 man/plot.hclus.Rd | 10 man/plot.kclus.Rd | 3 man/plot.mds.Rd | 3 man/plot.pre_factor.Rd | 10 man/plot.prmap.Rd | 12 man/pre_factor.Rd | 12 man/predict.conjoint.Rd | 16 man/predict_conjoint_by.Rd | 15 man/prmap.Rd | 15 man/radiant.multivariate.Rd | 5 man/retailers.Rd | 4 man/shopping.Rd | 4 man/store.conjoint.predict.Rd | 3 man/store.hclus.Rd |only man/summary.conjoint.Rd | 3 man/summary.full_factor.Rd | 3 man/toothpaste.Rd | 4 man/tpbrands.Rd | 4 69 files changed, 1042 insertions(+), 589 deletions(-)
More information about radiant.multivariate at CRAN
Permanent link
Title: Calls Real Time APIs from Data Gov Singapore
Description: A wrapper for the Data Gov Singapore developer resources
endpoints developer tools, which provide real time and historical
information, ranging from carpark availability to weather forecasts.
This tools makes the API calls for a given date and time, before
returning the relevant information in a data frame. Relevant information
can be found here <https://data.gov.sg/developer>.
Author: Clinton Wong <cwxy.clinton@gmail.com>
Maintainer: Clinton Wong <cwxy.clinton@gmail.com>
Diff between datagovsgR versions 0.3.0 dated 2020-02-25 and 0.3.1 dated 2020-03-25
datagovsgR-0.3.0/datagovsgR/R/UVI.R |only datagovsgR-0.3.0/datagovsgR/R/UVISummary.R |only datagovsgR-0.3.0/datagovsgR/man/uvi.Rd |only datagovsgR-0.3.0/datagovsgR/man/uvi_summary.Rd |only datagovsgR-0.3.1/datagovsgR/DESCRIPTION | 6 datagovsgR-0.3.1/datagovsgR/MD5 | 20 datagovsgR-0.3.1/datagovsgR/NAMESPACE | 22 datagovsgR-0.3.1/datagovsgR/README.md | 18 datagovsgR-0.3.1/datagovsgR/inst/doc/datagovsgR-vignette.R | 6 datagovsgR-0.3.1/datagovsgR/inst/doc/datagovsgR-vignette.Rmd | 14 datagovsgR-0.3.1/datagovsgR/inst/doc/datagovsgR-vignette.html | 260 ++++------ datagovsgR-0.3.1/datagovsgR/man/carpark_availability.Rd | 2 datagovsgR-0.3.1/datagovsgR/vignettes/datagovsgR-vignette.Rmd | 14 13 files changed, 156 insertions(+), 206 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-01 0.1.1
2019-03-13 0.1.0
Title: Time-Based Rolling Functions
Description: Provides rolling statistical functions based
on date and time windows instead of n-lagged observations.
Author: Michael Schramm [aut, cre] (<https://orcid.org/0000-0003-1876-6592>),
Frank Harrell [ctb]
Maintainer: Michael Schramm <michael.schramm@ag.tamu.edu>
Diff between tbrf versions 0.1.3 dated 2019-11-15 and 0.1.4 dated 2020-03-25
DESCRIPTION | 11 +-- MD5 | 59 ++++++++-------- NAMESPACE | 4 + NEWS.md | 10 ++ R/data.R | 4 - R/tbr_binom.R | 12 +-- R/tbr_gmean.R | 8 +- R/tbr_mean.R | 6 - R/tbr_median.R | 2 R/tbr_misc.R | 10 +- R/tbr_sd.R | 4 - R/tbr_sum.R | 6 - R/utils.R | 28 ++++++++ README.md | 41 +++-------- build/vignette.rds |binary inst/WORDLIST |only inst/doc/intro_to_tbrf.R | 30 ++++---- inst/doc/intro_to_tbrf.Rmd | 4 - inst/doc/intro_to_tbrf.html | 115 ++++++++++++++++----------------- man/Dissolved_Oxygen.Rd | 10 +- man/binom_ci.Rd | 13 ++- man/figures/README-tbr_hour-1.png |binary man/figures/README-tbr_threehour-1.png |binary man/gm_mean.Rd | 2 man/gm_mean_ci.Rd | 13 ++- man/mean_ci.Rd | 13 ++- man/median_ci.Rd | 13 ++- man/open_window.Rd |only man/tbr_binom.Rd | 2 tests/spelling.R |only tests/testthat/test-expectedValues.R | 2 vignettes/intro_to_tbrf.Rmd | 4 - 32 files changed, 238 insertions(+), 188 deletions(-)
Title: Interface for the RobinHood.com No Commission Investing Platform
Description: Execute API calls to the RobinHood <https://robinhood.com> investing platform. Functionality includes accessing account data and current holdings, retrieving investment statistics and quotes, placing and canceling orders, getting market trading hours, searching investments by popular tag, and interacting with watch lists.
Author: Joseph Blubaugh
Maintainer: Joseph Blubaugh <jestonblu@gmail.com>
Diff between RobinHood versions 1.2.1 dated 2019-10-06 and 1.2.4 dated 2020-03-25
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/api_fundamentals.R | 5 ----- R/api_orders.R | 5 +++-- R/api_orders_crypto.R | 18 +++++++++--------- R/get_fundamentals.R | 7 +++++++ R/get_order_history.R | 5 +++-- R/place_order_crypto.R | 8 ++++---- man/api_orders.Rd | 20 +++++++++++++++++--- man/api_orders_crypto.Rd | 15 ++++++++++++--- man/get_order_history.Rd | 4 +++- man/place_order.Rd | 13 +++++++++++-- man/place_order_crypto.Rd | 4 ++-- 13 files changed, 88 insertions(+), 50 deletions(-)
Title: Tools to Visualize, Manipulate, and Summarize MCMC Output
Description: Performs key functions for MCMC analysis using minimal code - visualizes, manipulates, and summarizes MCMC output. Functions support simple and straightforward subsetting of model parameters within the calls, and produce presentable and 'publication-ready' output. MCMC output may be derived from Bayesian model output fit with JAGS, Stan, or other MCMC samplers.
Author: Casey Youngflesh [aut, cre] (<https://orcid.org/0000-0001-6343-3311>),
Christian Che-Castaldo [aut] (<https://orcid.org/0000-0002-7670-2178>),
Tyler Hardy [ctb]
Maintainer: Casey Youngflesh <caseyyoungflesh@gmail.com>
Diff between MCMCvis versions 0.13.5 dated 2019-12-07 and 0.14.0 dated 2020-03-25
DESCRIPTION | 8 +- MD5 | 36 ++++++------ NEWS.md | 11 +++ R/MCMCsummary.R | 121 +++++++++++++++++++++++++++++-------------- R/MCMCtrace.R | 8 +- build/vignette.rds |binary inst/doc/MCMCvis.R | 76 +++++++++++++-------------- inst/doc/MCMCvis.Rmd | 2 inst/doc/MCMCvis.html | 92 ++++++++++++++------------------ man/MCMC_data.Rd | 4 + man/MCMC_data2.Rd | 4 + man/MCMCchains.Rd | 12 +++- man/MCMCplot.Rd | 41 +++++++++++--- man/MCMCpstr.Rd | 10 ++- man/MCMCsummary.Rd | 25 ++++++-- man/MCMCtrace.Rd | 58 ++++++++++++++++---- man/MCMCvis.Rd | 1 tests/testthat/test_master.R | 8 ++ vignettes/MCMCvis.Rmd | 2 19 files changed, 328 insertions(+), 191 deletions(-)