Title: 'AWS S3' Client Package
Description: A simple client package for the Amazon Web Services ('AWS') Simple
Storage Service ('S3') 'REST' 'API' <https://aws.amazon.com/s3/>.
Author: Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>),
Boettiger Carl [ctb],
Andrew Martin [ctb],
Mark Thompson [ctb],
Tyler Hunt [ctb],
Steven Akins [ctb],
Bao Nguyen [ctb],
Thierry Onkelinx [ctb],
Andrii Degtiarov [ctb],
Dhruv Aggarwal [ctb],
Alyssa Columbus [ctb],
Simon Urbanek [cre, ctb]
Maintainer: Simon Urbanek <simon.urbanek@R-project.org>
Diff between aws.s3 versions 0.3.20 dated 2020-03-11 and 0.3.21 dated 2020-04-07
DESCRIPTION | 9 - MD5 | 50 ++++---- NAMESPACE | 3 NEWS.md | 10 + R/bucketlist.R | 26 ++-- R/delete_object.R | 2 R/put_object.R | 16 +- R/s3HTTP.R | 26 ++-- R/s3read_using.R | 10 + R/s3source.R | 7 - R/s3sync.R | 296 +++++++++++++++++++++++++++++----------------------- R/tagging.R | 2 R/utils.R | 43 +++++-- README.md | 22 +-- man/bucketlist.Rd | 2 man/copyobject.Rd | 10 + man/get_bucket.Rd | 25 +++- man/get_object.Rd | 30 ++++- man/put_bucket.Rd | 11 + man/put_object.Rd | 16 ++ man/s3HTTP.Rd | 36 ++++-- man/s3read_using.Rd | 4 man/s3saveRDS.Rd | 9 + man/s3source.Rd | 2 man/sync.Rd | 29 ++++- man/utilities.Rd | 15 ++ 26 files changed, 451 insertions(+), 260 deletions(-)
Title: Summarize CRAN Check Results in the Terminal
Description: The CRAN check results and where your package stands in the
CRAN submission queue in your R terminal.
Author: Francois Michonneau [aut, cre],
Ben Bolker [ctb]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between foghorn versions 1.1.4 dated 2019-11-28 and 1.1.5 dated 2020-04-07
DESCRIPTION | 8 ++--- MD5 | 16 +++++------ NAMESPACE | 1 NEWS.md | 4 ++ R/cran_details.R | 6 ++-- R/foghorn.R | 6 ++-- R/utils.R | 17 +++++++---- build/vignette.rds |binary inst/doc/foghorn.html | 72 ++++++++++++++++++++++---------------------------- 9 files changed, 65 insertions(+), 65 deletions(-)
Title: Pin, Discover and Share Resources
Description: Pin remote resources into a local cache to work offline,
improve speed and avoid recomputing; discover and share resources
in local folders, 'GitHub', 'Kaggle' or 'RStudio Connect'. Resources can
be anything from 'CSV', 'JSON', or image files to arbitrary R objects.
Author: Javier Luraschi [aut, cre],
RStudio [cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between pins versions 0.3.2 dated 2020-02-06 and 0.4.0 dated 2020-04-07
pins-0.3.2/pins/R/board_headers.R |only pins-0.3.2/pins/tests/testthat/pins |only pins-0.3.2/pins/tests/testthat/test-board-gfs.R |only pins-0.4.0/pins/DESCRIPTION | 13 pins-0.4.0/pins/MD5 | 156 +++-- pins-0.4.0/pins/NAMESPACE | 2 pins-0.4.0/pins/NEWS.md | 62 ++ pins-0.4.0/pins/R/board.R | 22 pins-0.4.0/pins/R/board_azure.R | 17 pins-0.4.0/pins/R/board_datatxt.R | 119 +++- pins-0.4.0/pins/R/board_datatxt_headers.R |only pins-0.4.0/pins/R/board_dospaces.R |only pins-0.4.0/pins/R/board_extensions.R | 8 pins-0.4.0/pins/R/board_gcloud.R | 3 pins-0.4.0/pins/R/board_github.R | 269 ++++++++-- pins-0.4.0/pins/R/board_kaggle.R | 117 +++- pins-0.4.0/pins/R/board_local.R | 38 + pins-0.4.0/pins/R/board_registration.R | 58 ++ pins-0.4.0/pins/R/board_rsconnect.R | 56 +- pins-0.4.0/pins/R/board_rsconnect_api.R | 11 pins-0.4.0/pins/R/board_rsconnect_bundle.R | 19 pins-0.4.0/pins/R/board_rsconnect_token.R | 9 pins-0.4.0/pins/R/board_s3.R | 18 pins-0.4.0/pins/R/board_test.R | 72 ++ pins-0.4.0/pins/R/board_utils.R |only pins-0.4.0/pins/R/package.R |only pins-0.4.0/pins/R/pin.R | 132 ++++ pins-0.4.0/pins/R/pin_download.R | 15 pins-0.4.0/pins/R/pin_extensions.R | 28 - pins-0.4.0/pins/R/pin_manifest.R | 14 pins-0.4.0/pins/R/pin_registry.R | 67 ++ pins-0.4.0/pins/R/pin_tools.R | 3 pins-0.4.0/pins/R/versions.R |only pins-0.4.0/pins/README.md | 5 pins-0.4.0/pins/build/vignette.rds |binary pins-0.4.0/pins/inst/doc/advanced-versions.R |only pins-0.4.0/pins/inst/doc/advanced-versions.Rmd |only pins-0.4.0/pins/inst/doc/advanced-versions.html |only pins-0.4.0/pins/inst/doc/boards-azure.R | 6 pins-0.4.0/pins/inst/doc/boards-azure.Rmd | 9 pins-0.4.0/pins/inst/doc/boards-azure.html | 4 pins-0.4.0/pins/inst/doc/boards-dospace.R |only pins-0.4.0/pins/inst/doc/boards-dospace.Rmd |only pins-0.4.0/pins/inst/doc/boards-dospace.html |only pins-0.4.0/pins/inst/doc/boards-gcloud.R | 6 pins-0.4.0/pins/inst/doc/boards-gcloud.Rmd | 9 pins-0.4.0/pins/inst/doc/boards-gcloud.html | 4 pins-0.4.0/pins/inst/doc/boards-rsconnect.R | 7 pins-0.4.0/pins/inst/doc/boards-rsconnect.Rmd | 29 - pins-0.4.0/pins/inst/doc/boards-rsconnect.html | 79 +- pins-0.4.0/pins/inst/doc/boards-s3.R | 6 pins-0.4.0/pins/inst/doc/boards-s3.Rmd | 9 pins-0.4.0/pins/inst/doc/boards-s3.html | 4 pins-0.4.0/pins/inst/doc/boards-understanding.Rmd | 5 pins-0.4.0/pins/inst/doc/boards-understanding.html | 5 pins-0.4.0/pins/inst/doc/pins-starting.R | 6 pins-0.4.0/pins/inst/doc/pins-starting.Rmd | 31 - pins-0.4.0/pins/inst/doc/pins-starting.html | 31 - pins-0.4.0/pins/inst/rstudio/shinycon/app.R | 53 + pins-0.4.0/pins/inst/views/data/index.html | 2 pins-0.4.0/pins/man/board_default.Rd | 2 pins-0.4.0/pins/man/board_register.Rd | 9 pins-0.4.0/pins/man/board_register_dospace.Rd |only pins-0.4.0/pins/man/board_register_github.Rd | 7 pins-0.4.0/pins/man/board_register_s3.Rd | 4 pins-0.4.0/pins/man/board_test.Rd | 7 pins-0.4.0/pins/man/pin_find.Rd | 2 pins-0.4.0/pins/man/pin_get.Rd | 12 pins-0.4.0/pins/man/pin_info.Rd | 5 pins-0.4.0/pins/man/pin_versions.Rd |only pins-0.4.0/pins/tests/testthat/test-board-dospace.R |only pins-0.4.0/pins/tests/testthat/test-board-gcloud.R |only pins-0.4.0/pins/tests/testthat/test-board-github.R | 3 pins-0.4.0/pins/tests/testthat/test-board-local.R | 13 pins-0.4.0/pins/tests/testthat/test-board-rsconnect.R | 12 pins-0.4.0/pins/tests/testthat/test-board-s3.R | 36 - pins-0.4.0/pins/tests/testthat/test-board-wasb.R | 37 - pins-0.4.0/pins/tests/testthat/test-pin-object.R | 26 pins-0.4.0/pins/tests/testthat/test-pin-remote.R | 18 pins-0.4.0/pins/vignettes/advanced-versions.Rmd |only pins-0.4.0/pins/vignettes/boards-azure.Rmd | 9 pins-0.4.0/pins/vignettes/boards-dospace.Rmd |only pins-0.4.0/pins/vignettes/boards-gcloud.Rmd | 9 pins-0.4.0/pins/vignettes/boards-rsconnect.Rmd | 29 - pins-0.4.0/pins/vignettes/boards-s3.Rmd | 9 pins-0.4.0/pins/vignettes/boards-understanding.Rmd | 5 pins-0.4.0/pins/vignettes/images/boards-digitalocean-create-storage.jpg |only pins-0.4.0/pins/vignettes/images/boards-digitalocean-storage-pin.jpg |only pins-0.4.0/pins/vignettes/pins-starting.Rmd | 31 - 89 files changed, 1528 insertions(+), 395 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-05 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-11 1.3.0
2018-02-22 1.2.3
2017-11-07 1.2.2
2017-08-15 1.2.1
2017-07-25 1.2
2016-08-17 1.1.1
2016-08-13 1.1.0
2015-07-24 1.0.4
2015-04-28 1.0.3
2015-03-19 1.0.2
2015-02-12 1.0.1
2015-02-11 1.0
Title: Clean Biological Occurrence Records
Description: Clean biological occurrence records. Includes functionality
for cleaning based on various aspects of spatial coordinates,
unlikely values due to political 'centroids', coordinates based on
where collections of specimens are held, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between scrubr versions 0.3.0 dated 2020-02-10 and 0.3.2 dated 2020-04-07
DESCRIPTION | 8 ++-- MD5 | 44 +++++++++++----------- NEWS.md | 8 ++++ R/coord-funs.R | 4 +- R/ecoregion.R | 10 +++-- R/scrubr-package.R | 4 +- R/taxonomy-funs.R | 2 - README.md | 2 - build/vignette.rds |binary inst/doc/scrubr.Rmd | 97 ++++++++++++++++++++++++++---------------------- inst/doc/scrubr.html | 99 +++++++++++++++++++++++++++----------------------- man/coords.Rd | 2 - man/eco_region.Rd | 2 - man/sample_data_1.Rd | 6 ++- man/sample_data_2.Rd | 6 ++- man/sample_data_3.Rd | 6 ++- man/sample_data_4.Rd | 6 ++- man/sample_data_5.Rd | 6 ++- man/sample_data_6.Rd | 6 ++- man/sample_data_7.Rd | 6 ++- man/scrubr-package.Rd | 4 +- man/taxonomy.Rd | 2 - vignettes/scrubr.Rmd | 97 ++++++++++++++++++++++++++---------------------- 23 files changed, 239 insertions(+), 188 deletions(-)
Title: Non-Homogeneous Markov Switching Autoregressive Models
Description: Calibration, simulation, validation of (non-)homogeneous Markov switching autoregressive models with Gaussian or von Mises innovations. Penalization methods are implemented for Markov Switching Vector Autoregressive Models of order 1 only. Most functions of the package handle missing values.
Author: Valerie Monbet
Maintainer: Valerie Monbet <valerie.monbet@gmail.com>
Diff between NHMSAR versions 1.16 dated 2020-03-14 and 1.17 dated 2020-04-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Mstep.classif.R | 2 +- R/init.theta.MSAR.R | 36 +++++++++++++++++++++++++----------- 4 files changed, 33 insertions(+), 19 deletions(-)
Title: Power Calculations Under Genetic Model Misspecification
Description: Power and sample size calculations for genetic association studies allowing
for misspecification of the model of genetic susceptibility.
Power and/or sample size can be calculated for logistic (case/control study design)
and linear (continuous phenotype) regression models, using additive, dominant,
recessive or degree of freedom coding of the genetic covariate while assuming
a true dominant, recessive or additive genetic effect. In addition, power and
sample size calculations can be performed for gene by environment interactions.
These methods are extensions of Gauderman (2002)
<doi:10.1093/aje/155.5.478> and Gauderman (2002) <doi:10.1002/sim.973>
and are described in:
Moore CM, Jacobson S, Fingerlin TE. Power and Sample Size Calculations
for Genetic Association Studies in the Presence of Genetic Model Misspecification.
American Society of Human Genetics.
October 2018, San Diego.
Author: Camille Moore [aut, cre],
Sean Jacobson [aut]
Maintainer: Camille Moore <moorec@njhealth.org>
Diff between genpwr versions 1.0.1 dated 2019-09-17 and 1.0.2 dated 2020-04-07
DESCRIPTION | 9 MD5 | 152 ++--- NAMESPACE | 150 ++--- NEWS.md | 4 R/genpwr_wrapper.R | 2 R/sample_size_function.R | 16 build/vignette.rds |binary inst/doc/vignette.R | 38 - inst/doc/vignette.html | 452 ++++++++++++---- man/X_mat_returner.Rd | 46 - man/X_mat_returner_lle.Rd | 44 - man/add.fun.t.Rd | 66 +- man/add.or.function.Rd | 68 +- man/additive.ll.Rd | 50 - man/additive.ll.linear.Rd | 60 +- man/as.numeric2.Rd | 42 - man/calc.like.Rd | 54 - man/calc.like.linear.Rd | 68 +- man/calc.like.linear.log.envir.interaction.Rd | 107 ++- man/df2.ll.Rd | 50 - man/df2.ll.linear.Rd | 60 +- man/dom.fun.t.Rd | 66 +- man/dom.or.function.Rd | 68 +- man/dominant.ll.Rd | 50 - man/dominant.ll.linear.Rd | 60 +- man/es.calc.linear.Rd | 79 +- man/expected.linear.ll.Rd | 56 - man/expected.linear.ll.lin.env.Rd | 46 - man/find.prob.dom.Rd | 62 +- man/find.prob.rec.Rd | 62 +- man/genpwr.calc.Rd | 188 +++--- man/integrand_funct_case.Rd | 50 - man/integrand_funct_control.Rd | 50 - man/linear.mles.Rd | 54 - man/linear.mles.lin.envir.interaction.Rd | 79 +- man/linear.mles.lin.envir.interaction_reduced.Rd | 81 +- man/linear.mles.log.envir.interaction.Rd | 84 +- man/linear.outcome.lin.envir.interaction.sds.Rd | 91 +-- man/linear.outcome.lin.envir.interaction.sds_reduced.Rd | 91 +-- man/linear.outcome.log.envir.interaction.sds.Rd | 87 +-- man/linear.sds.Rd | 62 +- man/ll.ge.logistic.Rd | 64 +- man/ll.ge.logistic.lin.envir.Rd | 97 +-- man/ll.linear.selector.Rd | 42 - man/ll_zero_finder2.Rd | 62 +- man/logistic.mles.Rd | 48 - man/logit.Rd | 50 - man/ncp.search.Rd | 54 - man/null.ll.Rd | 44 - man/null.ll.linear.Rd | 60 +- man/odds_ratio_function.Rd | 90 +-- man/or.function.2df.Rd | 68 +- man/or.plot.Rd | 130 ++-- man/or_calc.Rd | 74 +- man/p_vec_returner.Rd | 46 - man/p_vec_returner_lin_env.Rd | 44 - man/power.calc.Rd | 84 +- man/power.calc.linear.Rd | 85 +-- man/power.plot.Rd | 128 ++-- man/power_envir.calc.Rd | 100 +-- man/power_envir.calc.linear_outcome.Rd | 111 ++- man/power_linear_envir.calc.linear_outcome.Rd | 117 ++-- man/power_linear_envir.calc.logistic_outcome.Rd | 107 ++- man/quad_roots.Rd | 54 - man/rec.fun.t.Rd | 66 +- man/rec.or.function.Rd | 68 +- man/recessive.ll.Rd | 50 - man/recessive.ll.linear.Rd | 60 +- man/solve_a.Rd | 58 +- man/ss.calc.Rd | 84 +- man/ss.calc.linear.Rd | 85 +-- man/ss.plot.Rd | 130 ++-- man/ss_envir.calc.Rd | 100 +-- man/ss_envir.calc.linear_outcome.Rd | 111 ++- man/ss_linear_envir.calc.linear_outcome.Rd | 117 ++-- man/ss_linear_envir.calc.logistic_outcome.Rd | 107 ++- man/zero_finder_nleqslv.Rd | 79 +- 77 files changed, 3189 insertions(+), 2689 deletions(-)
Title: Fetch 'Scholary' Full Text from 'Crossref'
Description: Text mining client for 'Crossref' (<https://crossref.org>). Includes
functions for getting getting links to full text of articles, fetching full
text articles from those links or Digital Object Identifiers ('DOIs'),
and text extraction from 'PDFs'.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between crminer versions 0.3.0 dated 2020-03-13 and 0.3.2 dated 2020-04-07
.Rinstignore |only DESCRIPTION | 8 ++--- MD5 | 55 +++++++++++++++++++++++++++++----------- NEWS.md | 11 ++++++++ R/crm_links.R | 34 +++++++++++++++++------- R/crm_pdf.R | 3 +- R/crm_text.R | 2 - R/utils.R | 32 +++++++++++++---------- README.md | 1 man/crm_links.Rd | 6 ++++ tests/files |only tests/fixtures |only tests/testthat/helper-crminer.R |only tests/testthat/test-crm_html.R | 13 ++++++--- tests/testthat/test-crm_links.R | 28 +++++++++++++------- tests/testthat/test-crm_pdf.R | 46 +++++++++++++++++++-------------- tests/testthat/test-crm_plain.R | 20 ++++++++------ tests/testthat/test-crm_text.R | 42 ++++++++++++++++-------------- tests/testthat/test-crm_xml.R | 24 ++++++++++------- 19 files changed, 211 insertions(+), 114 deletions(-)
Title: Analysis of Heavy Tailed Distributions
Description: An implementation of maximum likelihood estimators
for a variety of heavy tailed distributions, including both the
discrete and continuous power law distributions. Additionally, a
goodness-of-fit based approach is used to estimate the lower cut-off
for the scaling region.
Author: Colin Gillespie [aut, cre] (<https://orcid.org/0000-0003-1787-0275>)
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between poweRlaw versions 0.70.2 dated 2019-01-10 and 0.70.4 dated 2020-04-07
poweRlaw-0.70.2/poweRlaw/R/AllGenerics.R |only poweRlaw-0.70.2/poweRlaw/R/ctn_helper_functions.R |only poweRlaw-0.70.2/poweRlaw/R/def_conlorm.R |only poweRlaw-0.70.2/poweRlaw/R/poweRlaw-package.R |only poweRlaw-0.70.2/poweRlaw/vignettes/blackouts.txt |only poweRlaw-0.70.2/poweRlaw/vignettes/knitr_figure_poweRlaw |only poweRlaw-0.70.4/poweRlaw/DESCRIPTION | 48 - poweRlaw-0.70.4/poweRlaw/MD5 | 163 ++-- poweRlaw-0.70.4/poweRlaw/NAMESPACE | 2 poweRlaw-0.70.4/poweRlaw/NEWS.md | 14 poweRlaw-0.70.4/poweRlaw/R/aaa_all_classes.R | 27 poweRlaw-0.70.4/poweRlaw/R/all_generics.R |only poweRlaw-0.70.4/poweRlaw/R/bootstrap.R | 52 - poweRlaw-0.70.4/poweRlaw/R/bootstrap_p.R | 82 +- poweRlaw-0.70.4/poweRlaw/R/checks.R | 8 poweRlaw-0.70.4/poweRlaw/R/compare_distributions.R | 18 poweRlaw-0.70.4/poweRlaw/R/conlnorm.R |only poweRlaw-0.70.4/poweRlaw/R/data_help_files.R | 53 - poweRlaw-0.70.4/poweRlaw/R/def_conexp.R | 91 +- poweRlaw-0.70.4/poweRlaw/R/def_conpl.R | 94 +- poweRlaw-0.70.4/poweRlaw/R/def_conweibull.R | 108 +-- poweRlaw-0.70.4/poweRlaw/R/def_disexp.R | 94 +- poweRlaw-0.70.4/poweRlaw/R/def_dislnorm.R | 101 +- poweRlaw-0.70.4/poweRlaw/R/def_displ.R | 106 +-- poweRlaw-0.70.4/poweRlaw/R/def_dispois.R | 89 +- poweRlaw-0.70.4/poweRlaw/R/def_template.R | 2 poweRlaw-0.70.4/poweRlaw/R/dist_data_cdf_methods.R | 26 poweRlaw-0.70.4/poweRlaw/R/estimate_pars.R | 17 poweRlaw-0.70.4/poweRlaw/R/estimate_xmin.R | 86 +- poweRlaw-0.70.4/poweRlaw/R/get_n.R | 3 poweRlaw-0.70.4/poweRlaw/R/get_ntail.R | 9 poweRlaw-0.70.4/poweRlaw/R/lines_methods.R | 39 - poweRlaw-0.70.4/poweRlaw/R/plcon.R | 26 poweRlaw-0.70.4/poweRlaw/R/pldis.R | 56 - poweRlaw-0.70.4/poweRlaw/R/plot_methods.R | 116 +-- poweRlaw-0.70.4/poweRlaw/R/points_methods.R | 19 poweRlaw-0.70.4/poweRlaw/R/powerlaw-package.R |only poweRlaw-0.70.4/poweRlaw/R/show_methods.R | 2 poweRlaw-0.70.4/poweRlaw/R/timer.R | 6 poweRlaw-0.70.4/poweRlaw/README.md | 47 - poweRlaw-0.70.4/poweRlaw/build/vignette.rds |binary poweRlaw-0.70.4/poweRlaw/inst/doc/a_introduction.R | 273 ++++--- poweRlaw-0.70.4/poweRlaw/inst/doc/a_introduction.Rnw | 213 +++--- poweRlaw-0.70.4/poweRlaw/inst/doc/a_introduction.pdf |binary poweRlaw-0.70.4/poweRlaw/inst/doc/b_powerlaw_examples.R | 344 +++++----- poweRlaw-0.70.4/poweRlaw/inst/doc/b_powerlaw_examples.Rnw | 238 +++--- poweRlaw-0.70.4/poweRlaw/inst/doc/b_powerlaw_examples.pdf |binary poweRlaw-0.70.4/poweRlaw/inst/doc/c_comparing_distributions.R | 58 - poweRlaw-0.70.4/poweRlaw/inst/doc/c_comparing_distributions.Rnw | 66 - poweRlaw-0.70.4/poweRlaw/inst/doc/c_comparing_distributions.pdf |binary poweRlaw-0.70.4/poweRlaw/inst/doc/d_jss_paper.pdf |binary poweRlaw-0.70.4/poweRlaw/man/bootstrap_moby.Rd | 18 poweRlaw-0.70.4/poweRlaw/man/displ.Rd | 11 poweRlaw-0.70.4/poweRlaw/man/dist_cdf-methods.Rd | 14 poweRlaw-0.70.4/poweRlaw/man/dist_data_cdf-methods.Rd | 17 poweRlaw-0.70.4/poweRlaw/man/dist_ll-methods.Rd | 8 poweRlaw-0.70.4/poweRlaw/man/dist_pdf-methods.Rd | 8 poweRlaw-0.70.4/poweRlaw/man/dist_rand-methods.Rd | 8 poweRlaw-0.70.4/poweRlaw/man/dplcon.Rd | 3 poweRlaw-0.70.4/poweRlaw/man/dpldis.Rd | 17 poweRlaw-0.70.4/poweRlaw/man/estimate_xmin.Rd | 60 + poweRlaw-0.70.4/poweRlaw/man/figures |only poweRlaw-0.70.4/poweRlaw/man/get_KS_statistic-deprecated.Rd | 3 poweRlaw-0.70.4/poweRlaw/man/moby.Rd | 6 poweRlaw-0.70.4/poweRlaw/man/native_american.Rd | 12 poweRlaw-0.70.4/poweRlaw/man/plot-distribution-ANY-method.Rd | 6 poweRlaw-0.70.4/poweRlaw/man/plot.bs_xmin.Rd | 4 poweRlaw-0.70.4/poweRlaw/man/population.Rd | 4 poweRlaw-0.70.4/poweRlaw/man/poweRlaw-package.Rd | 2 poweRlaw-0.70.4/poweRlaw/man/show-distribution-method.Rd | 1 poweRlaw-0.70.4/poweRlaw/tests/testthat/test_bootstrap.R | 14 poweRlaw-0.70.4/poweRlaw/tests/testthat/test_bootstrap_p.R | 8 poweRlaw-0.70.4/poweRlaw/tests/testthat/test_checks.R | 2 poweRlaw-0.70.4/poweRlaw/tests/testthat/test_compare_distributions.R | 18 poweRlaw-0.70.4/poweRlaw/tests/testthat/test_dist_cdf.R | 132 +-- poweRlaw-0.70.4/poweRlaw/tests/testthat/test_dist_data_cdf.R | 32 poweRlaw-0.70.4/poweRlaw/tests/testthat/test_dist_ll.R | 68 - poweRlaw-0.70.4/poweRlaw/tests/testthat/test_estimate_pars.R | 33 poweRlaw-0.70.4/poweRlaw/tests/testthat/test_estimate_xmin.R | 47 - poweRlaw-0.70.4/poweRlaw/tests/testthat/test_get_sims.R |only poweRlaw-0.70.4/poweRlaw/tests/testthat/test_plot.R | 68 - poweRlaw-0.70.4/poweRlaw/tests/testthat/test_show.R | 4 poweRlaw-0.70.4/poweRlaw/vignettes/a_introduction.Rnw | 213 +++--- poweRlaw-0.70.4/poweRlaw/vignettes/b_powerlaw_examples.Rnw | 238 +++--- poweRlaw-0.70.4/poweRlaw/vignettes/c_comparing_distributions.Rnw | 66 - poweRlaw-0.70.4/poweRlaw/vignettes/examples1.rds |binary 86 files changed, 2028 insertions(+), 1913 deletions(-)
Title: Bayesian Logistic Regression for Oncology Dose-Escalation Trials
Description: Bayesian logistic regression model with optional
EXchangeability-NonEXchangeability parameter modelling for flexible
borrowing from historical or concurrent data-sources. The safety model
can guide dose-escalation decisions for adaptive oncology Phase I
dose-escalation trials which involve an arbitrary number of
drugs. Please refer to Neuenschwander et al. (2008)
<doi:10.1002/sim.3230> and Neuenschwander et al. (2016)
<doi:10.1080/19466315.2016.1174149> for details on the methodology.
Author: Novartis Pharma AG [cph],
Sebastian Weber [aut, cre],
Lukas A. Widmer [aut],
Andrew Bean [aut],
Trustees of Columbia University [cph] (R/stanmodels.R, configure,
configure.win)
Maintainer: Sebastian Weber <sebastian.weber@novartis.com>
Diff between OncoBayes2 versions 0.6-3 dated 2020-03-19 and 0.6-4 dated 2020-04-07
DESCRIPTION | 8 MD5 | 29 +-- NAMESPACE | 1 R/blrm_formula_linear.R | 22 +- R/blrm_formula_saturating.R |only R/blrm_trial.R | 3 R/sysdata.rda |binary inst/NEWS | 5 inst/doc/OncoBayes2.pdf |binary inst/doc/introduction.html | 266 ++++++++++++++++----------------- inst/extra |only inst/sbc/sbc_report.html | 4 man/blrm_formula_linear.Rd | 4 man/blrm_formula_saturating.Rd |only man/blrm_trial.Rd | 3 tests/testthat/helper-trial_examples.R | 3 tests/testthat/test-blrm_trial.R | 49 ++++-- 17 files changed, 218 insertions(+), 179 deletions(-)
Title: Demonstrations for Teaching and Learning
Description: Demonstration functions that can be used in a classroom to demonstrate statistical concepts, or on your own to better understand the concepts or the programming.
Author: Greg Snow
Maintainer: Greg Snow <538280@gmail.com>
Diff between TeachingDemos versions 2.10 dated 2016-02-12 and 2.12 dated 2020-04-07
DESCRIPTION | 14 +++++++++----- MD5 | 32 ++++++++++++++++---------------- NEWS | 9 +++++++++ R/shadowtext.R | 24 +++++++++++------------- data/USCrimes.rda |binary data/coin.faces.rda |binary data/evap.rda |binary data/gps.rda |binary data/ldsgrowth.rda |binary data/outliers.rda |binary data/steps.rda |binary data/stork.rda |binary man/USCrimes.Rd | 2 +- man/fagan.Rd | 1 - man/panel.mysymbols.Rd | 2 +- man/shadowtext.Rd | 6 ++++-- man/simfun.Rd | 6 +++--- 17 files changed, 54 insertions(+), 42 deletions(-)
Title: Global Sensitivity Analysis of Model Outputs
Description: A collection of functions for factor screening, global sensitivity analysis and robustness analysis. Most of the functions have to be applied on model with scalar output, but several functions support multi-dimensional outputs.
Author: Bertrand Iooss, Alexandre Janon and Gilles Pujol, with contributions from Baptiste Broto, Khalid Boumhaout, Sebastien Da Veiga, Thibault Delage, Reda El Amri, Jana Fruth, Laurent Gilquin, Joseph Guillaume, Loic Le Gratiet, Paul Lemaitre, Amandine Marrel, Anouar Meynaoui, Barry L. Nelson, Filippo Monari, Roelof Oomen, Oldrich Rakovec, Bernardo Ramos, Olivier Roustant, Eunhye Song, Jeremy Staum, Roman Sueur, Taieb Touati, Frank Weber
Maintainer: Bertrand Iooss <biooss@yahoo.fr>
Diff between sensitivity versions 1.18.0 dated 2020-03-13 and 1.18.1 dated 2020-04-07
DESCRIPTION | 6 - MD5 | 28 ++++----- NEWS | 14 ++++ R/base.R | 11 +-- R/morris.R | 22 ++++--- R/morris_oat.R | 9 +- R/pcc.R | 53 +++++++++++++---- R/simplex.R | 8 +- R/sobolmartinez.R | 2 R/src.R | 138 ++++++++++++++++++++++----------------------- man/delsa.Rd | 1 man/pcc.Rd | 37 +++++++++--- man/sensitivity-package.Rd | 2 man/sobolMultOut.Rd | 3 man/testmodels.Rd | 2 15 files changed, 199 insertions(+), 137 deletions(-)
Title: Enhanced Reading and Writing for 'SQLite' Databases
Description: Reads and writes data frames to 'SQLite'
databases while preserving time zones (for POSIXct columns),
projections (for 'sfc' columns), units (for 'units' columns), levels
(for factors and ordered factors) and classes for logical, Date and
'hms' columns. It also logs changes to tables and provides more
informative error messages.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Sebastian Dalgarno [ctb] (<https://orcid.org/0000-0002-3658-4517>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between readwritesqlite versions 0.1.0 dated 2020-01-29 and 0.1.1 dated 2020-04-07
DESCRIPTION | 10 ++-- MD5 | 18 +++---- NEWS.md | 4 + README.md | 36 +++++++-------- inst/doc/using-readwritesqlite.html | 86 ++++++++++++++++++++---------------- man/rws_data.Rd | 4 + tests/testthat/test-meta.R | 24 +++++++++- tests/testthat/test-query.R | 12 ++++- tests/testthat/test-read.R | 13 +++++ tests/testthat/test-write.R | 50 ++++++++++++++++++-- 10 files changed, 175 insertions(+), 82 deletions(-)
More information about readwritesqlite at CRAN
Permanent link
Title: Convert Data from and to 'GeoJSON' or 'TopoJSON'
Description: Convert data to 'GeoJSON' or 'TopoJSON' from various R classes,
including vectors, lists, data frames, shape files, and spatial classes.
'geojsonio' does not aim to replace packages like 'sp', 'rgdal', 'rgeos',
but rather aims to be a high level client to simplify conversions of data
from and to 'GeoJSON' and 'TopoJSON'.
Author: Scott Chamberlain [aut, cre],
Andy Teucher [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between geojsonio versions 0.9.0 dated 2020-02-13 and 0.9.2 dated 2020-04-07
geojsonio-0.9.0/geojsonio/inst/ignore |only geojsonio-0.9.2/geojsonio/.Rinstignore |only geojsonio-0.9.2/geojsonio/DESCRIPTION | 8 geojsonio-0.9.2/geojsonio/MD5 | 83 +- geojsonio-0.9.2/geojsonio/NAMESPACE | 23 geojsonio-0.9.2/geojsonio/NEWS.md | 8 geojsonio-0.9.2/geojsonio/R/geojson_write.r | 2 geojsonio-0.9.2/geojsonio/R/projections.r | 2 geojsonio-0.9.2/geojsonio/R/topojson_write.R | 191 ----- geojsonio-0.9.2/geojsonio/R/zzz.r | 3 geojsonio-0.9.2/geojsonio/README.md | 1 geojsonio-0.9.2/geojsonio/build/vignette.rds |binary geojsonio-0.9.2/geojsonio/inst/doc/geojson_spec.html | 4 geojsonio-0.9.2/geojsonio/inst/doc/geojsonio.html | 4 geojsonio-0.9.2/geojsonio/inst/doc/maps.html | 4 geojsonio-0.9.2/geojsonio/man/canada_cities.Rd | 6 geojsonio-0.9.2/geojsonio/man/geojson_write.Rd | 2 geojsonio-0.9.2/geojsonio/man/projections.Rd | 2 geojsonio-0.9.2/geojsonio/man/topojson_write.Rd | 163 ---- geojsonio-0.9.2/geojsonio/man/us_cities.Rd | 6 geojsonio-0.9.2/geojsonio/tests/testthat/test-as.json.R | 8 geojsonio-0.9.2/geojsonio/tests/testthat/test-bounds.R | 4 geojsonio-0.9.2/geojsonio/tests/testthat/test-centroid.R | 2 geojsonio-0.9.2/geojsonio/tests/testthat/test-construction.R | 4 geojsonio-0.9.2/geojsonio/tests/testthat/test-crs_convert.R | 336 +++++----- geojsonio-0.9.2/geojsonio/tests/testthat/test-geo_topo.R | 10 geojsonio-0.9.2/geojsonio/tests/testthat/test-geojson_atomize.R | 6 geojsonio-0.9.2/geojsonio/tests/testthat/test-geojson_json.R | 12 geojsonio-0.9.2/geojsonio/tests/testthat/test-geojson_list.R | 12 geojsonio-0.9.2/geojsonio/tests/testthat/test-geojson_read.R | 8 geojsonio-0.9.2/geojsonio/tests/testthat/test-geojson_sf.R | 6 geojsonio-0.9.2/geojsonio/tests/testthat/test-geojson_sp.R | 6 geojsonio-0.9.2/geojsonio/tests/testthat/test-geojson_write.R | 4 geojsonio-0.9.2/geojsonio/tests/testthat/test-mapleaflet.R | 15 geojsonio-0.9.2/geojsonio/tests/testthat/test-pretty.R | 4 geojsonio-0.9.2/geojsonio/tests/testthat/test-sf_classes.R | 2 geojsonio-0.9.2/geojsonio/tests/testthat/test-topojson_json.R | 10 geojsonio-0.9.2/geojsonio/tests/testthat/test-topojson_list.R | 10 geojsonio-0.9.2/geojsonio/tests/testthat/test-topojson_read.R | 10 geojsonio-0.9.2/geojsonio/tests/testthat/test-topojson_write.R | 262 +++---- 40 files changed, 507 insertions(+), 736 deletions(-)
Title: Transformation Models with Mixed Effects
Description: Likelihood-based estimation of mixed-effects transformation models using the Template
Model Builder (TMB). The technical details of transformation models are given in Hothorn et al. (2018)
<doi:10.1111/sjos.12291>. The random effects are assumed to be normally distributed on the scale of the
transformation function, the marginal likelihood is evaluated using the Laplace approximation,
and the gradients are calculated with automatic differentiation (AD).
Author: Balint Tamasi [aut, cre],
Torsten Hothorn [ctb] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Balint Tamasi <balint.tamasi@uzh.ch>
Diff between tramME versions 0.0.1 dated 2020-03-21 and 0.0.2 dated 2020-04-07
DESCRIPTION | 8 ++-- MD5 | 29 +++++++------- NEWS.md |only build/vignette.rds |binary inst/doc/tramME.Rnw | 2 - inst/doc/tramME.pdf |binary tests/LmME.R | 8 +++- tests/LmME.Rout.save | 19 +++++---- tests/basics.R | 16 +++++--- tests/basics.Rout.save | 93 +++++++++++++---------------------------------- tests/methods.R | 9 +++- tests/methods.Rout.save | 22 +++-------- tests/predict.R | 5 ++ tests/predict.Rout.save | 29 ++++++++------ tests/simulate.Rout.save | 2 - vignettes/tramME.Rnw | 2 - 16 files changed, 108 insertions(+), 136 deletions(-)
Title: Spatial Seemingly Unrelated Regression Models
Description: A collection of functions to test and estimate Seemingly
Unrelated Regression (usually called SUR) models, with spatial structure, by maximum
likelihood and three-stage least squares. The package estimates the
most common spatial specifications, that is, SUR with Spatial Lag of
X regressors (called SUR-SLX), SUR with Spatial Lag Model (called SUR-SLM),
SUR with Spatial Error Model (called SUR-SEM), SUR with Spatial Durbin Model (called SUR-SDM),
SUR with Spatial Durbin Error Model (called SUR-SDEM),
SUR with Spatial Autoregressive terms and Spatial Autoregressive
Disturbances (called SUR-SARAR) and SUR with Spatially Independent Model (called SUR-SIM).
The methodology of these models can be found in next references
Mur, J., Lopez, F., and Herrera, M. (2010) <doi:10.1080/17421772.2010.516443>
Lopez, F.A., Mur, J., and Angulo, A. (2014) <doi:10.1007/s00168-014-0624-2>.
Author: Ana Angulo [aut],
Fernando A Lopez [aut],
Roman Minguez [aut, cre],
Jesus Mur [aut]
Maintainer: Roman Minguez <roman.minguez@uclm.es>
Diff between spsur versions 1.0.0.4 dated 2019-12-12 and 1.0.1.3 dated 2020-04-07
spsur-1.0.0.4/spsur/R/cov_spsur.R |only spsur-1.0.0.4/spsur/R/impacts.R |only spsur-1.0.0.4/spsur/R/lr_betas_spsur.R |only spsur-1.0.0.4/spsur/R/waldtest.R |only spsur-1.0.0.4/spsur/inst/doc/spsur-vignette.R |only spsur-1.0.0.4/spsur/inst/doc/spsur-vignette.Rmd |only spsur-1.0.0.4/spsur/inst/doc/spsur-vignette.html |only spsur-1.0.0.4/spsur/man/NCOVR.Rd |only spsur-1.0.0.4/spsur/man/W.Rd |only spsur-1.0.0.4/spsur/man/figures |only spsur-1.0.0.4/spsur/man/impacts.Rd |only spsur-1.0.0.4/spsur/man/lr_betas_spsur.Rd |only spsur-1.0.0.4/spsur/vignettes/Figure1_JSS2.png |only spsur-1.0.0.4/spsur/vignettes/rsconnect |only spsur-1.0.0.4/spsur/vignettes/spsur-vignette.Rmd |only spsur-1.0.1.3/spsur/DESCRIPTION | 21 spsur-1.0.1.3/spsur/MD5 | 116 +- spsur-1.0.1.3/spsur/NAMESPACE | 31 spsur-1.0.1.3/spsur/R/aux_functions.R | 7 spsur-1.0.1.3/spsur/R/cov_spsur_f.R |only spsur-1.0.1.3/spsur/R/datasets.R | 59 - spsur-1.0.1.3/spsur/R/dgp_spSUR.R | 588 ++++++----- spsur-1.0.1.3/spsur/R/fit_spsur.R | 412 +++----- spsur-1.0.1.3/spsur/R/fit_spsur_3sls.R | 33 spsur-1.0.1.3/spsur/R/get_data_spsur.R | 169 ++- spsur-1.0.1.3/spsur/R/impactspsur.R |only spsur-1.0.1.3/spsur/R/llikspsur.R | 349 ++---- spsur-1.0.1.3/spsur/R/lmtestspsur.R | 311 +++--- spsur-1.0.1.3/spsur/R/lr_betas.R |only spsur-1.0.1.3/spsur/R/lrtestspsur.R | 357 +------ spsur-1.0.1.3/spsur/R/methods_spsur.R |only spsur-1.0.1.3/spsur/R/print.summary.spsur.R | 152 +- spsur-1.0.1.3/spsur/R/spSUR-package.R | 220 ++-- spsur-1.0.1.3/spsur/R/spsur3sls.R | 442 +++++--- spsur-1.0.1.3/spsur/R/spsurml.R | 1014 ++++++++++++-------- spsur-1.0.1.3/spsur/R/spsurtime.R | 319 +++--- spsur-1.0.1.3/spsur/R/summary.spsur.R | 28 spsur-1.0.1.3/spsur/R/sur3_spdiag.R | 248 ++-- spsur-1.0.1.3/spsur/R/wald_betas.R | 297 +++-- spsur-1.0.1.3/spsur/R/wald_deltas.R | 308 +++--- spsur-1.0.1.3/spsur/build/vignette.rds |binary spsur-1.0.1.3/spsur/data/NCOVR.RData |binary spsur-1.0.1.3/spsur/demo |only spsur-1.0.1.3/spsur/inst/doc/vig1.R |only spsur-1.0.1.3/spsur/inst/doc/vig1.Rmd |only spsur-1.0.1.3/spsur/inst/doc/vig1.html |only spsur-1.0.1.3/spsur/inst/doc/vig2.R |only spsur-1.0.1.3/spsur/inst/doc/vig2.Rmd |only spsur-1.0.1.3/spsur/inst/doc/vig2.html |only spsur-1.0.1.3/spsur/man/NCOVR.sf.Rd |only spsur-1.0.1.3/spsur/man/Wspc.Rd | 6 spsur-1.0.1.3/spsur/man/dgp_spsur.Rd | 454 ++++---- spsur-1.0.1.3/spsur/man/impactspsur.Rd |only spsur-1.0.1.3/spsur/man/lmtestspsur.Rd | 241 ++-- spsur-1.0.1.3/spsur/man/lr_betas.Rd |only spsur-1.0.1.3/spsur/man/lrtestspsur.Rd | 213 +--- spsur-1.0.1.3/spsur/man/methods_spsur.Rd |only spsur-1.0.1.3/spsur/man/spc.Rd | 6 spsur-1.0.1.3/spsur/man/spsur-package.Rd | 213 ++-- spsur-1.0.1.3/spsur/man/spsur3sls.Rd | 321 +++--- spsur-1.0.1.3/spsur/man/spsurml.Rd | 630 +++++++----- spsur-1.0.1.3/spsur/man/spsurtime.Rd | 337 +++--- spsur-1.0.1.3/spsur/man/summary.spsur.Rd | 2 spsur-1.0.1.3/spsur/man/wald_betas.Rd | 168 +-- spsur-1.0.1.3/spsur/man/wald_deltas.Rd | 185 ++- spsur-1.0.1.3/spsur/vignettes/bibliosure.bib | 250 ++++ spsur-1.0.1.3/spsur/vignettes/fig21_qgeom_usa.png |only spsur-1.0.1.3/spsur/vignettes/fig22_qmap_usa.png |only spsur-1.0.1.3/spsur/vignettes/fig23_qreslm_usa.png |only spsur-1.0.1.3/spsur/vignettes/fig31_qressim_usa.png |only spsur-1.0.1.3/spsur/vignettes/vig1.Rmd |only spsur-1.0.1.3/spsur/vignettes/vig2.Rmd |only 72 files changed, 4662 insertions(+), 3845 deletions(-)
Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>),
Matthieu Stigler [ctb],
Eric Persson [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.5-13 dated 2018-09-21 and 0.5-14 dated 2020-04-07
DESCRIPTION | 10 +- MD5 | 136 ++++++++++++++--------------- R/SDMXREST20RequestBuilder-methods.R | 6 - R/SDMXREST21RequestBuilder-methods.R | 6 - R/readSDMX.R | 4 R/rsdmx.R | 4 README.md | 8 - build/vignette.rds |binary inst/doc/quickstart.Rmd | 2 inst/doc/quickstart.html | 2 man/SDMX.Rd | 14 +- man/SDMXAgency.Rd | 11 +- man/SDMXAgencyScheme.Rd | 15 +-- man/SDMXAttribute.Rd | 20 ++-- man/SDMXCode.Rd | 24 ++--- man/SDMXCodelist.Rd | 15 +-- man/SDMXCodelists.Rd | 16 +-- man/SDMXCompactData.Rd | 14 +- man/SDMXComponents.Rd | 20 ++-- man/SDMXConcept.Rd | 17 +-- man/SDMXConceptScheme.Rd | 20 ++-- man/SDMXConcepts.Rd | 25 ++--- man/SDMXCrossSectionalData.Rd | 14 +- man/SDMXData.Rd | 16 +-- man/SDMXDataFlow.Rd | 17 +-- man/SDMXDataFlows.Rd | 24 ++--- man/SDMXDataStructure.Rd | 20 ++-- man/SDMXDataStructureDefinition.Rd | 28 +++-- man/SDMXDataStructures.Rd | 24 ++--- man/SDMXDimension.Rd | 20 ++-- man/SDMXDotStatRequestBuilder.Rd | 36 +++---- man/SDMXFooter.Rd | 25 ++--- man/SDMXFooterMessage.Rd | 26 ++--- man/SDMXGenericData.Rd | 17 +-- man/SDMXHeader.Rd | 33 +++---- man/SDMXItemScheme.Rd | 4 man/SDMXMessageGroup.Rd | 17 +-- man/SDMXOrganisation.Rd | 16 +-- man/SDMXOrganisationScheme.Rd | 4 man/SDMXOrganisationSchemes.Rd | 18 ++- man/SDMXPrimaryMeasure.Rd | 18 ++- man/SDMXREST20RequestBuilder.Rd | 33 +++---- man/SDMXREST21RequestBuilder.Rd | 33 +++---- man/SDMXRequestBuilder.Rd | 25 ++--- man/SDMXRequestParams.Rd | 15 +-- man/SDMXSchema.Rd | 15 +-- man/SDMXServiceProvider.Rd | 28 +++-- man/SDMXServiceProviders.Rd | 18 ++- man/SDMXStructureSpecificData.Rd | 17 +-- man/SDMXStructureSpecificTimeSeriesData.Rd | 17 +-- man/SDMXStructureType.Rd | 15 +-- man/SDMXTimeDimension.Rd | 18 ++- man/SDMXType.Rd | 15 +-- man/SDMXUtilityData.Rd | 17 +-- man/addSDMXServiceProvider.Rd | 20 ++-- man/findNamespace.Rd | 14 +- man/findSDMXServiceProvider.Rd | 20 ++-- man/getNamespaces.Rd | 17 +-- man/getRegistryInterfaceResult.Rd | 10 +- man/getSDMXServiceProviders.Rd | 15 +-- man/getSoapRequestResult.Rd | 12 +- man/isRegistryInterfaceEnvelope.Rd | 12 +- man/isSoapRequestEnvelope.Rd | 10 +- man/readSDMX.Rd | 73 +++++++-------- man/rsdmx.Rd | 11 +- man/saveSDMX.Rd | 9 + man/setDSD.Rd | 15 --- man/setSDMXServiceProviders.Rd | 29 ++++-- vignettes/quickstart.Rmd | 2 69 files changed, 674 insertions(+), 627 deletions(-)
Title: Power/Sample Size Calculation for Mediation Analysis
Description: Functions to
calculate power and sample size for testing
(1) mediation effects;
(2) the slope in a simple linear regression;
(3) odds ratio in a simple logistic regression;
(4) mean change for longitudinal study with 2 time points;
(5) interaction effect in 2-way ANOVA; and
(6) the slope in a simple Poisson regression.
Author: Weiliang Qiu <weiliang.qiu@gmail.com>
Maintainer: Weiliang Qiu <weiliang.qiu@gmail.com>
Diff between powerMediation versions 0.2.9 dated 2018-02-07 and 0.3.2 dated 2020-04-07
powerMediation-0.2.9/powerMediation/R/power_interaction.R |only powerMediation-0.2.9/powerMediation/man/powerInteract.Rd |only powerMediation-0.3.2/powerMediation/DESCRIPTION | 14 - powerMediation-0.3.2/powerMediation/MD5 | 10 - powerMediation-0.3.2/powerMediation/NAMESPACE | 82 +++++------ powerMediation-0.3.2/powerMediation/NEWS | 14 + powerMediation-0.3.2/powerMediation/R/powerInteract2by2.R |only powerMediation-0.3.2/powerMediation/man/powerInteract2by2.Rd |only 8 files changed, 67 insertions(+), 53 deletions(-)
More information about powerMediation at CRAN
Permanent link
Title: Download Google Sheets Using Just the URL
Description: Simple package to download Google Sheets using just the sharing
link. Spreadsheets can be downloaded as a data frame, or as plain text to parse
manually. Google Sheets is the new name for Google Docs Spreadsheets <https://www.google.com/sheets/about>.
Author: Max Conway [aut, cre]
Maintainer: Max Conway <conway.max1@gmail.com>
Diff between gsheet versions 0.4.2 dated 2016-12-30 and 0.4.5 dated 2020-04-07
DESCRIPTION | 13 +++++++------ MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ README.md | 4 ++-- man/construct_download_url.Rd | 1 - man/gsheet2tbl.Rd | 1 - man/gsheet2text.Rd | 1 - 7 files changed, 23 insertions(+), 17 deletions(-)
Title: Forest Mensuration and Management
Description: Processing forest inventory data with methods such as simple random sampling, stratified random sampling and systematic sampling. There are also functions for yield and growth predictions and model fitting, linear and nonlinear grouped data fitting, and statistical tests. References: Kershaw Jr., Ducey, Beers and Husch (2016). <doi:10.1002/9781118902028>.
Author: Sollano Rabelo Braga [aut, cre, cph],
Marcio Leles Romarco de Oliveira [aut],
Eric Bastos Gorgens [aut]
Maintainer: Sollano Rabelo Braga <sollanorb@gmail.com>
Diff between forestmangr versions 0.9.1 dated 2019-01-02 and 0.9.2 dated 2020-04-07
DESCRIPTION | 20 MD5 | 230 +++--- NAMESPACE | 2 NEWS.md | 28 R/average_tree_curve.R | 102 ++ R/bdq_meyer.R | 18 R/bias_per.R | 11 R/class_center.R |only R/diameter_class.R | 29 R/exfm7.R | 2 R/fit_clutter.R | 2 R/forest_structure.R | 2 R/graybill_f.R | 9 R/ident_model.R | 3 R/lm_table.R | 18 R/nls_table.R | 113 +-- R/plot_summarise.R | 2 R/quasiquo.R | 2 R/rm_empty_col.R |only R/rmse_per.R | 11 R/sprs.R | 16 R/ss_diffs.R | 22 R/strs.R | 25 R/tree_summarise.R | 55 + R/vol_summarise.R | 3 README.md | 212 ++--- build/vignette.rds |binary data/exfm7.rda |binary inst/doc/eq_group_fit_en.R | 26 inst/doc/eq_group_fit_en.html | 316 ++++---- inst/doc/eq_group_fit_ptbr.R | 26 inst/doc/eq_group_fit_ptbr.html | 316 ++++---- inst/doc/invent_vol_plot_en.R | 22 inst/doc/invent_vol_plot_en.html | 311 ++++---- inst/doc/invent_vol_plot_ptbr.R | 22 inst/doc/invent_vol_plot_ptbr.Rmd | 1 inst/doc/invent_vol_plot_ptbr.html | 311 ++++---- inst/doc/phyto_ana_en.R | 22 inst/doc/phyto_ana_en.html | 407 ++++++----- inst/doc/phyto_ana_ptbr.R | 22 inst/doc/phyto_ana_ptbr.html | 396 +++++----- inst/doc/sampling_en.R | 30 inst/doc/sampling_en.Rmd | 4 inst/doc/sampling_en.html | 1341 +++++++++++++++++-------------------- inst/doc/sampling_ptbr.R | 30 inst/doc/sampling_ptbr.Rmd | 2 inst/doc/sampling_ptbr.html | 1153 ++++++++++++++----------------- inst/doc/volume_est_en.R | 20 inst/doc/volume_est_en.html | 233 +++--- inst/doc/volume_est_ptbr.R | 20 inst/doc/volume_est_ptbr.html | 233 +++--- inst/doc/yield_growth_en.R | 14 inst/doc/yield_growth_en.html | 183 ++--- inst/doc/yield_growth_ptbr.R | 14 inst/doc/yield_growth_ptbr.html | 183 ++--- man/average_tree_curve.Rd | 109 +-- man/bdq_meyer.Rd | 122 +-- man/bias_per.Rd | 90 +- man/check_names.Rd | 70 - man/class_center.Rd |only man/classify_site.Rd | 88 +- man/diameter_class.Rd | 168 ++-- man/dom_height.Rd | 149 ++-- man/est_clutter.Rd | 159 ++-- man/exfm1.Rd | 54 - man/exfm10.Rd | 70 - man/exfm11.Rd | 52 - man/exfm12.Rd | 56 - man/exfm13.Rd | 54 - man/exfm14.Rd | 48 - man/exfm15.Rd | 54 - man/exfm16.Rd | 54 - man/exfm17.Rd | 56 - man/exfm18.Rd | 52 - man/exfm19.Rd | 56 - man/exfm2.Rd | 54 - man/exfm20.Rd | 76 +- man/exfm21.Rd | 66 - man/exfm22.Rd | 46 - man/exfm3.Rd | 52 - man/exfm4.Rd | 52 - man/exfm5.Rd | 52 - man/exfm6.Rd | 68 - man/exfm7.Rd | 62 - man/exfm8.Rd | 60 - man/exfm9.Rd | 68 - man/fit_clutter.Rd | 146 ++-- man/forest_structure.Rd | 132 +-- man/graybill_f.Rd | 134 +-- man/guide_curve.Rd | 150 ++-- man/huberwb.Rd | 117 +-- man/huberwob.Rd | 134 +-- man/ident_model.Rd | 187 ++--- man/inv.Rd | 84 +- man/lm_table.Rd | 166 ++-- man/nls_table.Rd | 259 +++---- man/npv_irr.Rd | 115 +-- man/pipe.Rd | 22 man/plot_summarise.Rd | 182 ++--- man/pow.Rd | 86 +- man/resid_plot.Rd | 171 ++-- man/rm_empty_col.Rd |only man/rmse_per.Rd | 90 +- man/round_df.Rd | 82 +- man/similarity_matrix.Rd | 131 +-- man/smalianwb.Rd | 129 +-- man/smalianwob.Rd | 139 ++- man/species_aggreg.Rd | 76 +- man/species_diversity.Rd | 105 +- man/sprs.Rd | 192 ++--- man/ss_diffs.Rd | 184 ++--- man/strs.Rd | 199 ++--- man/tree_summarise.Rd | 88 +- man/vertical_stratum.Rd | 70 - man/vol_summarise.Rd | 130 +-- vignettes/invent_vol_plot_ptbr.Rmd | 1 vignettes/sampling_en.Rmd | 4 vignettes/sampling_ptbr.Rmd | 2 118 files changed, 6419 insertions(+), 6100 deletions(-)
Title: Java GUI for R
Description: Java GUI for R - cross-platform, universal and unified Graphical User Interface for R. For full functionality on Windows and Mac OS X JGR requires a start application which depends on your OS.
Author: Markus Helbig <mhelbig81@googlemail.com>, Simon Urbanek, Ian Fellows
Maintainer: Markus Helbig <mhelbig81@googlemail.com>
Diff between JGR versions 1.8-6 dated 2018-07-12 and 1.8-7 dated 2020-04-07
DESCRIPTION | 16 ++++++++-------- MD5 | 8 ++++---- NEWS | 5 +++++ R/JGR.R | 2 +- inst/java/JGR.jar |binary 5 files changed, 18 insertions(+), 13 deletions(-)
Title: Convert Spatial Data Using Tidy Tables
Description: Tools to convert from specific formats to more general forms of
spatial data. Using tables to store the actual entities present in spatial
data provides flexibility, and the functions here deliberately
minimize the level of interpretation applied, leaving that for specific
applications. Includes support for simple features, round-trip for 'Spatial' classes and long-form
tables, analogous to 'ggplot2::fortify'. There is also a more 'normal form' representation
that decomposes simple features and their kin to tables of objects, parts, and unique coordinates.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between spbabel versions 0.5.0 dated 2019-01-08 and 0.5.1 dated 2020-04-07
spbabel-0.5.0/spbabel/inst/doc/sfbabel.R |only spbabel-0.5.0/spbabel/inst/doc/sfbabel.Rmd |only spbabel-0.5.0/spbabel/inst/doc/sfbabel.html |only spbabel-0.5.0/spbabel/tests/testthat/test-map_table.R |only spbabel-0.5.0/spbabel/vignettes/sfbabel.Rmd |only spbabel-0.5.1/spbabel/DESCRIPTION | 10 spbabel-0.5.1/spbabel/MD5 | 45 +-- spbabel-0.5.1/spbabel/NAMESPACE | 5 spbabel-0.5.1/spbabel/NEWS.md | 6 spbabel-0.5.1/spbabel/R/map_table.r | 50 +-- spbabel-0.5.1/spbabel/R/spFromTable.r | 23 - spbabel-0.5.1/spbabel/R/utils.r | 30 +- spbabel-0.5.1/spbabel/README.md | 37 +- spbabel-0.5.1/spbabel/build/vignette.rds |binary spbabel-0.5.1/spbabel/inst/doc/spbabel.R | 12 spbabel-0.5.1/spbabel/inst/doc/spbabel.Rmd | 2 spbabel-0.5.1/spbabel/inst/doc/spbabel.html | 228 ++++++++-------- spbabel-0.5.1/spbabel/man/feature_table.Rd | 1 spbabel-0.5.1/spbabel/man/map_table.Rd | 23 - spbabel-0.5.1/spbabel/man/sp-methods.Rd | 1 spbabel-0.5.1/spbabel/man/sptable.Rd | 4 spbabel-0.5.1/spbabel/tests/testthat/test-sf.R | 30 -- spbabel-0.5.1/spbabel/tests/testthat/test-spFromTable.R | 22 - spbabel-0.5.1/spbabel/tests/testthat/test-trip.R | 24 - spbabel-0.5.1/spbabel/tests/testthat/test-utils.R | 10 spbabel-0.5.1/spbabel/vignettes/spbabel.Rmd | 2 26 files changed, 285 insertions(+), 280 deletions(-)
Title: Choose Univariate Class Intervals
Description: Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.
Author: Roger Bivand [aut, cre] (<https://orcid.org/0000-0003-2392-6140>),
Hisaji Ono [ctb],
Richard Dunlap [ctb],
Matthieu Stigler [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Diego Hernangómez [ctb] (<https://orcid.org/0000-0001-8457-4658>)
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between classInt versions 0.4-2 dated 2019-10-17 and 0.4-3 dated 2020-04-07
ChangeLog | 292 ++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 20 +-- MD5 | 20 +-- R/classInt.R | 37 ++++- build |only inst/ChangeLog | 292 ++++++++++++++++++++++++++++++++++++++++++++ inst/doc |only man/classIntervals.Rd | 91 +++++++++++++ tests/test_Unique.R | 3 tests/test_Unique.Rout.save | 17 ++ vignettes |only 11 files changed, 748 insertions(+), 24 deletions(-)
Title: Data Set and Helper Functions for Wind Farm Layout Optimization
Problems
Description: Provides a convenient data set, a set of helper functions, and a benchmark function for
economically (profit) driven wind farm layout optimization. This enables researchers in the field of the NP-hard (non-deterministic polynomial-time hard) problem of wind farm layout optimization to focus on their optimization methodology contribution and also provides a realistic benchmark setting for comparability among contributions.
Author: Carsten Croonenbroeck [aut, cre],
David Hennecke [ctb]
Maintainer: Carsten Croonenbroeck <carsten.croonenbroeck@uni-rostock.de>
Diff between wflo versions 1.2 dated 2020-03-25 and 1.3 dated 2020-04-07
wflo-1.2/wflo/man/IsInWake.Rd |only wflo-1.3/wflo/DESCRIPTION | 13 -- wflo-1.3/wflo/MD5 | 30 ++-- wflo-1.3/wflo/NAMESPACE | 2 wflo-1.3/wflo/R/Functions.R | 208 +++++++++++++++++++++++++++----- wflo-1.3/wflo/R/zzz.R | 2 wflo-1.3/wflo/data/FarmData.RData |binary wflo-1.3/wflo/inst/doc/wflo.Rnw | 9 - wflo-1.3/wflo/inst/doc/wflo.pdf |binary wflo-1.3/wflo/man/FarmData.Rd | 8 + wflo-1.3/wflo/man/GetAngle.Rd | 4 wflo-1.3/wflo/man/JensenAngle.Rd | 4 wflo-1.3/wflo/man/JensenFactor.Rd | 2 wflo-1.3/wflo/man/JensenTrapezoid.Rd |only wflo-1.3/wflo/man/PairPenalty.Rd | 2 wflo-1.3/wflo/man/PointInPolygon.Rd |only wflo-1.3/wflo/man/ShowWakePenalizers.Rd |only wflo-1.3/wflo/vignettes/wflo.Rnw | 9 - 18 files changed, 223 insertions(+), 70 deletions(-)
Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting
spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL'
bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Michael Sumner [ctb] (<https://orcid.org/0000-0002-2471-7511>),
Etienne Racine [ctb],
Adriano Fantini [ctb],
David Blodgett [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between stars versions 0.4-0 dated 2019-10-10 and 0.4-1 dated 2020-04-07
stars-0.4-0/stars/vignettes/contour.png |only stars-0.4-1/stars/DESCRIPTION | 19 stars-0.4-1/stars/MD5 | 204 +++-- stars-0.4-1/stars/NAMESPACE | 11 stars-0.4-1/stars/NEWS.md | 34 stars-0.4-1/stars/R/OpenStreetMap.R |only stars-0.4-1/stars/R/aggregate.R | 59 + stars-0.4-1/stars/R/dimensions.R | 53 + stars-0.4-1/stars/R/factors.R | 18 stars-0.4-1/stars/R/geom.R | 2 stars-0.4-1/stars/R/mosaic.R | 34 stars-0.4-1/stars/R/ncdf.R | 5 stars-0.4-1/stars/R/plot.R | 54 - stars-0.4-1/stars/R/proxy.R | 50 + stars-0.4-1/stars/R/raster.R | 22 stars-0.4-1/stars/R/read.R | 87 +- stars-0.4-1/stars/R/sample.R |only stars-0.4-1/stars/R/sf.R | 15 stars-0.4-1/stars/R/spatstat.R |only stars-0.4-1/stars/R/stars.R | 109 ++- stars-0.4-1/stars/R/subset.R | 22 stars-0.4-1/stars/R/tidyverse.R | 68 + stars-0.4-1/stars/R/transform.R | 29 stars-0.4-1/stars/R/warp.R | 54 + stars-0.4-1/stars/R/xts.R | 36 - stars-0.4-1/stars/build/vignette.rds |binary stars-0.4-1/stars/demo/00Index | 1 stars-0.4-1/stars/demo/udf_demo.R |only stars-0.4-1/stars/inst/doc/stars1.R | 53 - stars-0.4-1/stars/inst/doc/stars1.Rmd | 21 stars-0.4-1/stars/inst/doc/stars1.html | 708 ++++++-------------- stars-0.4-1/stars/inst/doc/stars2.R | 36 - stars-0.4-1/stars/inst/doc/stars2.Rmd | 12 stars-0.4-1/stars/inst/doc/stars2.html | 520 ++++---------- stars-0.4-1/stars/inst/doc/stars3.R | 22 stars-0.4-1/stars/inst/doc/stars3.Rmd | 12 stars-0.4-1/stars/inst/doc/stars3.html | 449 +++--------- stars-0.4-1/stars/inst/doc/stars4.R | 55 - stars-0.4-1/stars/inst/doc/stars4.Rmd | 19 stars-0.4-1/stars/inst/doc/stars4.html | 612 ++++++----------- stars-0.4-1/stars/inst/doc/stars5.R | 30 stars-0.4-1/stars/inst/doc/stars5.Rmd | 18 stars-0.4-1/stars/inst/doc/stars5.html | 485 +++---------- stars-0.4-1/stars/inst/tif/README |only stars-0.4-1/stars/inst/tif/lc.tif |only stars-0.4-1/stars/inst/tif/lc.tif.aux.xml |only stars-0.4-1/stars/man/aggregate.stars.Rd | 44 + stars-0.4-1/stars/man/coerce-methods.Rd | 1 stars-0.4-1/stars/man/dplyr.Rd | 15 stars-0.4-1/stars/man/figures |only stars-0.4-1/stars/man/geom_stars.Rd | 3 stars-0.4-1/stars/man/plot.Rd | 62 + stars-0.4-1/stars/man/read_ncdf.Rd | 14 stars-0.4-1/stars/man/read_stars.Rd | 29 stars-0.4-1/stars/man/redimension.Rd | 18 stars-0.4-1/stars/man/st_apply.Rd | 12 stars-0.4-1/stars/man/st_as_sf.Rd | 18 stars-0.4-1/stars/man/st_as_stars.Rd | 41 - stars-0.4-1/stars/man/st_contour.Rd | 8 stars-0.4-1/stars/man/st_crop.Rd | 14 stars-0.4-1/stars/man/st_dimensions.Rd | 21 stars-0.4-1/stars/man/st_intersects.stars.Rd | 3 stars-0.4-1/stars/man/st_join.stars.Rd | 13 stars-0.4-1/stars/man/st_mosaic.Rd | 30 stars-0.4-1/stars/man/st_raster_type.Rd |only stars-0.4-1/stars/man/st_rasterize.Rd | 11 stars-0.4-1/stars/man/st_warp.Rd | 21 stars-0.4-1/stars/man/stars_subset.Rd | 12 stars-0.4-1/stars/man/write_stars.Rd | 30 stars-0.4-1/stars/tests/aggregate.R | 2 stars-0.4-1/stars/tests/aggregate.Rout.save | 78 +- stars-0.4-1/stars/tests/area.Rout.save | 28 stars-0.4-1/stars/tests/crop.Rout.save | 10 stars-0.4-1/stars/tests/curvilinear.Rout.save | 45 - stars-0.4-1/stars/tests/gridtypes.Rout.save | 18 stars-0.4-1/stars/tests/nc.Rout.save | 100 +- stars-0.4-1/stars/tests/plot.R | 5 stars-0.4-1/stars/tests/plot.Rout.save | 14 stars-0.4-1/stars/tests/predict.Rout.save | 22 stars-0.4-1/stars/tests/proxy.R | 4 stars-0.4-1/stars/tests/proxy.Rout.save | 99 +- stars-0.4-1/stars/tests/raster.Rout.save | 10 stars-0.4-1/stars/tests/rasterize.Rout.save | 34 stars-0.4-1/stars/tests/rectilinear.Rout.save | 12 stars-0.4-1/stars/tests/redimension.Rout.save | 56 - stars-0.4-1/stars/tests/sf.Rout.save | 26 stars-0.4-1/stars/tests/sp.R | 11 stars-0.4-1/stars/tests/sp.Rout.save | 41 - stars-0.4-1/stars/tests/spacetime.R | 6 stars-0.4-1/stars/tests/spacetime.Rout.save | 46 + stars-0.4-1/stars/tests/spatstat.R |only stars-0.4-1/stars/tests/spatstat.Rout.save |only stars-0.4-1/stars/tests/stars.R | 4 stars-0.4-1/stars/tests/stars.Rout.save | 209 +++-- stars-0.4-1/stars/tests/subset.Rout.save | 30 stars-0.4-1/stars/tests/testthat/test_ncdf.R | 5 stars-0.4-1/stars/tests/testthat/test_rectilinear.R | 4 stars-0.4-1/stars/tests/testthat/test_st_as_stars.R | 6 stars-0.4-1/stars/tests/tidy.Rout.save | 30 stars-0.4-1/stars/tests/transform.R | 3 stars-0.4-1/stars/tests/transform.Rout.save | 16 stars-0.4-1/stars/tests/write.Rout.save | 14 stars-0.4-1/stars/vignettes/stars1.Rmd | 21 stars-0.4-1/stars/vignettes/stars2.Rmd | 12 stars-0.4-1/stars/vignettes/stars3.Rmd | 12 stars-0.4-1/stars/vignettes/stars4.Rmd | 19 stars-0.4-1/stars/vignettes/stars5.Rmd | 18 107 files changed, 2629 insertions(+), 2899 deletions(-)
Title: Dashboard with Semantic UI Support for Shiny
Description: It offers functions for creating dashboard with Semantic UI.
Author: Filip Stachura [aut],
Dominik Krzeminski [cre],
Krystian Igras [ctb],
Michał Maj [ctb],
Appsilon Data Science [cph]
Maintainer: Dominik Krzeminski <dominik@appsilon.com>
Diff between semantic.dashboard versions 0.1.1 dated 2018-04-23 and 0.1.5 dated 2020-04-07
semantic.dashboard-0.1.1/semantic.dashboard/inst/prepare_package_cran.sh |only semantic.dashboard-0.1.5/semantic.dashboard/DESCRIPTION | 34 +++--- semantic.dashboard-0.1.5/semantic.dashboard/LICENSE | 3 semantic.dashboard-0.1.5/semantic.dashboard/MD5 | 50 +++++----- semantic.dashboard-0.1.5/semantic.dashboard/NAMESPACE | 2 semantic.dashboard-0.1.5/semantic.dashboard/R/box.R | 18 ++- semantic.dashboard-0.1.5/semantic.dashboard/R/constants.R | 49 --------- semantic.dashboard-0.1.5/semantic.dashboard/R/deps.R |only semantic.dashboard-0.1.5/semantic.dashboard/R/dropdown_menu_output.R | 4 semantic.dashboard-0.1.5/semantic.dashboard/R/menu_item.R | 5 - semantic.dashboard-0.1.5/semantic.dashboard/R/semantic_dashboard.R | 47 +++++++-- semantic.dashboard-0.1.5/semantic.dashboard/R/tab_box.R | 5 - semantic.dashboard-0.1.5/semantic.dashboard/R/value_box_output.R | 4 semantic.dashboard-0.1.5/semantic.dashboard/inst/semantic.dashboard.js |only semantic.dashboard-0.1.5/semantic.dashboard/inst/semantic.dashboard.min.js |only semantic.dashboard-0.1.5/semantic.dashboard/man/box.Rd | 18 +++ semantic.dashboard-0.1.5/semantic.dashboard/man/dashboard_header.Rd | 22 ++++ semantic.dashboard-0.1.5/semantic.dashboard/man/dashboard_page.Rd | 20 +++- semantic.dashboard-0.1.5/semantic.dashboard/man/dashboard_sidebar.Rd | 34 +++++- semantic.dashboard-0.1.5/semantic.dashboard/man/dropdown_menu_output.Rd | 2 semantic.dashboard-0.1.5/semantic.dashboard/man/get_dashboard_dependencies.Rd |only semantic.dashboard-0.1.5/semantic.dashboard/man/menu_item.Rd | 9 - semantic.dashboard-0.1.5/semantic.dashboard/man/render_dropdown_menu.Rd | 2 semantic.dashboard-0.1.5/semantic.dashboard/man/render_value_box.Rd | 2 semantic.dashboard-0.1.5/semantic.dashboard/man/semantic.dashboard.Rd |only semantic.dashboard-0.1.5/semantic.dashboard/man/sidebar_menu.Rd | 6 - semantic.dashboard-0.1.5/semantic.dashboard/man/tab_box.Rd | 30 +++++- semantic.dashboard-0.1.5/semantic.dashboard/man/value_box.Rd | 9 - semantic.dashboard-0.1.5/semantic.dashboard/man/value_box_output.Rd | 2 29 files changed, 225 insertions(+), 152 deletions(-)
More information about semantic.dashboard at CRAN
Permanent link
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <https://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb],
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 0.9.5 dated 2019-11-20 and 0.9.6 dated 2020-04-07
rnoaa-0.9.5/rnoaa/R/caching.R |only rnoaa-0.9.5/rnoaa/man/caching.Rd |only rnoaa-0.9.5/rnoaa/tools |only rnoaa-0.9.6/rnoaa/.Rinstignore |only rnoaa-0.9.6/rnoaa/DESCRIPTION | 24 - rnoaa-0.9.6/rnoaa/MD5 | 258 +++++++------ rnoaa-0.9.6/rnoaa/NAMESPACE | 10 rnoaa-0.9.6/rnoaa/NEWS.md | 25 + rnoaa-0.9.6/rnoaa/R/arc2.R | 9 rnoaa-0.9.6/rnoaa/R/bsw.R | 4 rnoaa-0.9.6/rnoaa/R/buoy.R | 5 rnoaa-0.9.6/rnoaa/R/coops.R | 5 rnoaa-0.9.6/rnoaa/R/cpc.R | 8 rnoaa-0.9.6/rnoaa/R/defunct.R | 10 rnoaa-0.9.6/rnoaa/R/ersst.R | 39 - rnoaa-0.9.6/rnoaa/R/ghcnd.R | 162 +++----- rnoaa-0.9.6/rnoaa/R/helpers_ghcnd.R | 28 - rnoaa-0.9.6/rnoaa/R/isd.R | 66 +-- rnoaa-0.9.6/rnoaa/R/isd_stations.R | 21 - rnoaa-0.9.6/rnoaa/R/lcd.R | 14 rnoaa-0.9.6/rnoaa/R/meteo-autoplot.R | 141 ++++--- rnoaa-0.9.6/rnoaa/R/meteo_cache.r | 4 rnoaa-0.9.6/rnoaa/R/meteo_distance.R | 122 +++--- rnoaa-0.9.6/rnoaa/R/meteo_utils.r | 79 ++- rnoaa-0.9.6/rnoaa/R/ncdc_locs.r | 2 rnoaa-0.9.6/rnoaa/R/ncdc_locs_cats.r | 4 rnoaa-0.9.6/rnoaa/R/onload.R | 35 + rnoaa-0.9.6/rnoaa/R/rnoaa_caching.R |only rnoaa-0.9.6/rnoaa/R/rnoaa_options.R |only rnoaa-0.9.6/rnoaa/R/storm_events.R | 13 rnoaa-0.9.6/rnoaa/R/storm_shp.R | 12 rnoaa-0.9.6/rnoaa/R/storms.R | 45 -- rnoaa-0.9.6/rnoaa/R/tornadoes.R | 58 +- rnoaa-0.9.6/rnoaa/R/zzz.r | 36 + rnoaa-0.9.6/rnoaa/README.md | 113 ++--- rnoaa-0.9.6/rnoaa/build/vignette.rds |binary rnoaa-0.9.6/rnoaa/inst/doc/buoy_vignette.html | 60 +-- rnoaa-0.9.6/rnoaa/inst/doc/homr_vignette.html | 90 ++-- rnoaa-0.9.6/rnoaa/inst/doc/ncdc_attributes.html | 15 rnoaa-0.9.6/rnoaa/inst/doc/ncdc_vignette.html | 88 ++-- rnoaa-0.9.6/rnoaa/inst/doc/ncdc_workflow.html | 60 +-- rnoaa-0.9.6/rnoaa/inst/doc/rnoaa_ropenaq.html | 184 ++++----- rnoaa-0.9.6/rnoaa/inst/doc/seaice_vignette.html | 74 +-- rnoaa-0.9.6/rnoaa/inst/doc/storms_vignette.html | 68 +-- rnoaa-0.9.6/rnoaa/inst/doc/swdi_vignette.html | 105 ++--- rnoaa-0.9.6/rnoaa/man/arc2.Rd | 5 rnoaa-0.9.6/rnoaa/man/argo.Rd | 34 + rnoaa-0.9.6/rnoaa/man/autoplot.meteo_coverage.Rd | 7 rnoaa-0.9.6/rnoaa/man/bsw.Rd | 4 rnoaa-0.9.6/rnoaa/man/coops.Rd | 17 rnoaa-0.9.6/rnoaa/man/cpc_prcp.Rd | 5 rnoaa-0.9.6/rnoaa/man/ersst.Rd | 13 rnoaa-0.9.6/rnoaa/man/figures |only rnoaa-0.9.6/rnoaa/man/fipscodes.Rd | 4 rnoaa-0.9.6/rnoaa/man/ghcnd.Rd | 15 rnoaa-0.9.6/rnoaa/man/ghcnd_clear_cache-defunct.Rd |only rnoaa-0.9.6/rnoaa/man/ghcnd_search.Rd | 10 rnoaa-0.9.6/rnoaa/man/ghcnd_stations.Rd | 5 rnoaa-0.9.6/rnoaa/man/homr.Rd | 26 + rnoaa-0.9.6/rnoaa/man/isd.Rd | 43 +- rnoaa-0.9.6/rnoaa/man/isd_read.Rd | 15 rnoaa-0.9.6/rnoaa/man/isd_stations.Rd | 19 rnoaa-0.9.6/rnoaa/man/isd_stations_search.Rd | 9 rnoaa-0.9.6/rnoaa/man/lcd.Rd | 11 rnoaa-0.9.6/rnoaa/man/meteo_clear_cache.Rd | 3 rnoaa-0.9.6/rnoaa/man/meteo_coverage.Rd | 16 rnoaa-0.9.6/rnoaa/man/meteo_distance.Rd | 10 rnoaa-0.9.6/rnoaa/man/meteo_nearby_stations.Rd | 18 rnoaa-0.9.6/rnoaa/man/meteo_pull_monitors.Rd | 15 rnoaa-0.9.6/rnoaa/man/meteo_show_cache.Rd | 3 rnoaa-0.9.6/rnoaa/man/meteo_tidy_ghcnd.Rd | 15 rnoaa-0.9.6/rnoaa/man/ncdc.Rd | 49 +- rnoaa-0.9.6/rnoaa/man/ncdc_combine.Rd | 15 rnoaa-0.9.6/rnoaa/man/ncdc_datacats.Rd | 33 + rnoaa-0.9.6/rnoaa/man/ncdc_datasets.Rd | 38 + rnoaa-0.9.6/rnoaa/man/ncdc_datatypes.Rd | 37 + rnoaa-0.9.6/rnoaa/man/ncdc_locs.Rd | 31 + rnoaa-0.9.6/rnoaa/man/ncdc_locs_cats.Rd | 29 + rnoaa-0.9.6/rnoaa/man/ncdc_plot.Rd | 14 rnoaa-0.9.6/rnoaa/man/ncdc_stations.Rd | 41 +- rnoaa-0.9.6/rnoaa/man/rnoaa-defunct.Rd | 2 rnoaa-0.9.6/rnoaa/man/rnoaa-package.Rd | 32 - 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rnoaa-0.9.6/rnoaa/tests/testthat/test-cpc_prcp.R | 27 + rnoaa-0.9.6/rnoaa/tests/testthat/test-ersst.R | 26 - rnoaa-0.9.6/rnoaa/tests/testthat/test-isd.R | 9 rnoaa-0.9.6/rnoaa/tests/testthat/test-lcd.R | 30 + rnoaa-0.9.6/rnoaa/tests/testthat/test-meteo.R | 16 rnoaa-0.9.6/rnoaa/tests/testthat/test-ncdc.r | 20 + rnoaa-0.9.6/rnoaa/tests/testthat/test-ncdc_datacats.r | 19 rnoaa-0.9.6/rnoaa/tests/testthat/test-ncdc_datasets.r | 19 rnoaa-0.9.6/rnoaa/tests/testthat/test-ncdc_datatypes.r | 35 + rnoaa-0.9.6/rnoaa/tests/testthat/test-ncdc_locs.r | 48 +- rnoaa-0.9.6/rnoaa/tests/testthat/test-ncdc_locs_cats.r | 19 rnoaa-0.9.6/rnoaa/tests/testthat/test-ncdc_stations.r | 19 rnoaa-0.9.6/rnoaa/tests/testthat/test-rnoaa_options.R |only rnoaa-0.9.6/rnoaa/tests/testthat/test-storms.R | 19 rnoaa-0.9.6/rnoaa/tests/testthat/test-utilities.R |only 135 files changed, 1907 insertions(+), 1326 deletions(-)
Title: Distributions for Ecological Models in 'nimble'
Description: Common ecological distributions for 'nimble' models in the form of nimbleFunction objects.
Includes Cormack-Jolly-Seber, occupancy, dynamic occupancy, hidden Markov, dynamic hidden Markov, and N-mixture models.
(Jolly (1965) <doi:10.2307/2333826>, Seber (1965) <10.2307/2333827>, Turek et al. (2016) <doi:10.1007/s10651-016-0353-z>).
Author: Benjamin R. Goldstein [aut, cre],
Daniel Turek [aut],
Lauren Ponisio [aut],
Perry de Valpine [aut]
Maintainer: Benjamin R. Goldstein <ben.goldstein@berkeley.edu>
Diff between nimbleEcology versions 0.2.0 dated 2020-02-21 and 0.2.1 dated 2020-04-07
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/dCJS.R | 4 ++-- R/dDHMM.R | 6 +++--- R/dDynOcc.R | 20 +++++++++++--------- R/dHMM.R | 6 ++---- R/dNmixture.R | 4 ++-- 7 files changed, 31 insertions(+), 31 deletions(-)
Title: Interactive Viewing of Spatial Data in R
Description: Quickly and conveniently create interactive
visualisations of spatial data with or without background maps.
Attributes of displayed features are fully queryable via pop-up
windows. Additional functionality includes methods to visualise true-
and false-color raster images and bounding boxes.
Author: Tim Appelhans [cre, aut],
Florian Detsch [aut],
Christoph Reudenbach [aut],
Stefan Woellauer [aut],
Spaska Forteva [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb],
Kenton Russell [ctb],
Michael Sumner [ctb],
Jochen Darley [ctb],
Pierre Roudier [ctb],
Patrick Schratz [ctb],
Environmental Informatics Marburg [ctb],
Lorenzo Busetto [ctb]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between mapview versions 2.7.0 dated 2019-05-13 and 2.7.8 dated 2020-04-07
mapview-2.7.0/mapview/R/RcppExports.R |only mapview-2.7.0/mapview/R/coords2JSON.R |only mapview-2.7.0/mapview/R/coords2Lines.R |only mapview-2.7.0/mapview/R/coords2Polygons.R |only mapview-2.7.0/mapview/R/mapviewOptions.R |only mapview-2.7.0/mapview/man/coords2JSON.Rd |only mapview-2.7.0/mapview/man/coords2Lines.Rd |only mapview-2.7.0/mapview/man/coords2Polygons.Rd |only mapview-2.7.0/mapview/man/poppendorf.Rd |only mapview-2.7.0/mapview/src |only mapview-2.7.8/mapview/DESCRIPTION | 33 mapview-2.7.8/mapview/MD5 | 108 - mapview-2.7.8/mapview/NAMESPACE | 14 mapview-2.7.8/mapview/NEWS | 20 mapview-2.7.8/mapview/NEWS.md | 20 mapview-2.7.8/mapview/R/color.R | 101 mapview-2.7.8/mapview/R/extensions.R | 370 +-- mapview-2.7.8/mapview/R/extent.R | 43 mapview-2.7.8/mapview/R/files.R | 440 ++-- mapview-2.7.8/mapview/R/garnishMap.R | 71 mapview-2.7.8/mapview/R/leafletControls.R | 102 - mapview-2.7.8/mapview/R/legend.R | 87 mapview-2.7.8/mapview/R/mapView.R | 710 +++--- mapview-2.7.8/mapview/R/mapshot.R | 5 mapview-2.7.8/mapview/R/mapview-deprecated.R | 9 mapview-2.7.8/mapview/R/mapview-package.R | 14 mapview-2.7.8/mapview/R/mapviewControls.R | 15 mapview-2.7.8/mapview/R/options.R |only mapview-2.7.8/mapview/R/plus.R | 43 mapview-2.7.8/mapview/R/projection.R | 2 mapview-2.7.8/mapview/R/raster.R | 1220 ------------ mapview-2.7.8/mapview/R/sf.R | 205 +- mapview-2.7.8/mapview/R/stars.R | 157 - mapview-2.7.8/mapview/R/viewRGB.R | 185 - mapview-2.7.8/mapview/R/watch.R |only mapview-2.7.8/mapview/data/breweries.rda |binary mapview-2.7.8/mapview/data/franconia.rda |binary mapview-2.7.8/mapview/data/trails.rda |binary mapview-2.7.8/mapview/man/addHomeButton.Rd | 9 mapview-2.7.8/mapview/man/addImageQuery.Rd | 16 mapview-2.7.8/mapview/man/addLogo.Rd | 13 mapview-2.7.8/mapview/man/addMouseCoordinates.Rd | 3 mapview-2.7.8/mapview/man/addStarsImage.Rd | 17 mapview-2.7.8/mapview/man/addStaticLabels.Rd | 6 mapview-2.7.8/mapview/man/cubeView.Rd | 9 mapview-2.7.8/mapview/man/latticeView.Rd | 12 mapview-2.7.8/mapview/man/mapView.Rd | 676 ++++-- mapview-2.7.8/mapview/man/mapshot.Rd | 11 mapview-2.7.8/mapview/man/mapview-deprecated.Rd | 9 mapview-2.7.8/mapview/man/mapviewColors.Rd | 11 mapview-2.7.8/mapview/man/mapviewOptions.Rd | 139 + mapview-2.7.8/mapview/man/mapviewWatcher.Rd |only mapview-2.7.8/mapview/man/plainView.Rd | 24 mapview-2.7.8/mapview/man/popup.Rd | 9 mapview-2.7.8/mapview/man/print-mapview-method.Rd | 1 mapview-2.7.8/mapview/man/show-mapview-method.Rd | 1 mapview-2.7.8/mapview/man/slideView.Rd | 58 mapview-2.7.8/mapview/man/viewExtent.Rd | 22 mapview-2.7.8/mapview/man/viewRGB.Rd | 29 mapview-2.7.8/mapview/tests/testthat/test-mapview.R |only mapview-2.7.8/mapview/tests/testthat/test-mapviewControls.R | 4 61 files changed, 2319 insertions(+), 2734 deletions(-)
Title: Routines for Performing Empirical Calibration of Observational
Study Estimates
Description: Routines for performing empirical calibration of observational
study estimates. By using a set of negative control hypotheses we can
estimate the empirical null distribution of a particular observational
study setup. This empirical null distribution can be used to compute a
calibrated p-value, which reflects the probability of observing an
estimated effect size when the null hypothesis is true taking both random
and systematic error into account. A similar approach can be used to
calibrate confidence intervals, using both negative and positive controls.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between EmpiricalCalibration versions 2.0.1 dated 2020-01-13 and 2.0.2 dated 2020-04-07
EmpiricalCalibration-2.0.1/EmpiricalCalibration/man/EmpiricalCalibration.Rd |only EmpiricalCalibration-2.0.2/EmpiricalCalibration/DESCRIPTION | 11 - EmpiricalCalibration-2.0.2/EmpiricalCalibration/MD5 | 34 +-- EmpiricalCalibration-2.0.2/EmpiricalCalibration/NAMESPACE | 2 EmpiricalCalibration-2.0.2/EmpiricalCalibration/NEWS.md | 81 +++++--- EmpiricalCalibration-2.0.2/EmpiricalCalibration/R/ConfidenceIntervalCalibration.R | 2 EmpiricalCalibration-2.0.2/EmpiricalCalibration/R/EmpiricalCalibration.R | 7 EmpiricalCalibration-2.0.2/EmpiricalCalibration/R/Plots.R | 13 + EmpiricalCalibration-2.0.2/EmpiricalCalibration/inst/doc/EmpiricalCiCalibrationVignette.R | 26 +- EmpiricalCalibration-2.0.2/EmpiricalCalibration/inst/doc/EmpiricalCiCalibrationVignette.pdf |binary EmpiricalCalibration-2.0.2/EmpiricalCalibration/inst/doc/EmpiricalPCalibrationVignette.R | 28 +-- EmpiricalCalibration-2.0.2/EmpiricalCalibration/inst/doc/EmpiricalPCalibrationVignette.pdf |binary EmpiricalCalibration-2.0.2/EmpiricalCalibration/man/EmpiricalCalibration-package.Rd |only EmpiricalCalibration-2.0.2/EmpiricalCalibration/man/caseControl.Rd | 72 ++++--- EmpiricalCalibration-2.0.2/EmpiricalCalibration/man/cohortMethod.Rd | 88 ++++----- EmpiricalCalibration-2.0.2/EmpiricalCalibration/man/computeTraditionalCi.Rd | 62 +++--- EmpiricalCalibration-2.0.2/EmpiricalCalibration/man/grahamReplication.Rd | 92 +++++----- EmpiricalCalibration-2.0.2/EmpiricalCalibration/man/sccs.Rd | 74 ++++---- EmpiricalCalibration-2.0.2/EmpiricalCalibration/man/southworthReplication.Rd | 78 ++++---- 19 files changed, 353 insertions(+), 317 deletions(-)
More information about EmpiricalCalibration at CRAN
Permanent link
Title: From Biological Sequences to Multidimensional Scaling
Description: Utilities dedicated to the analysis of
biological sequences by metric MultiDimensional Scaling with
projection of supplementary data. It contains functions for
reading multiple sequence alignment files, calculating distance
matrices, performing metric multidimensional scaling and
visualizing results.
Author: Julien Pele with Jean-Michel Becu, Rym Ben Boubaker, Herve Abdi, and Marie
Chabbert
Maintainer: Marie Chabbert <marie.chabbert@univ-angers.fr>
Diff between bios2mds versions 1.2.2 dated 2012-06-05 and 1.2.3 dated 2020-04-07
bios2mds-1.2.2/bios2mds/inst/doc |only bios2mds-1.2.3/bios2mds/DESCRIPTION | 18 +- bios2mds-1.2.3/bios2mds/MD5 | 27 ++-- bios2mds-1.2.3/bios2mds/NAMESPACE | 9 + bios2mds-1.2.3/bios2mds/R/col.group.R | 2 bios2mds-1.2.3/bios2mds/R/dis.R | 4 bios2mds-1.2.3/bios2mds/R/globals.R |only bios2mds-1.2.3/bios2mds/R/mat.dis.R | 155 +++++++++++------------- bios2mds-1.2.3/bios2mds/R/mmds.3D.plot.R | 4 bios2mds-1.2.3/bios2mds/inst/ex_class_file.csv |only bios2mds-1.2.3/bios2mds/man/bios2mds-package.Rd | 14 +- bios2mds-1.2.3/bios2mds/man/export.fasta.Rd | 8 - bios2mds-1.2.3/bios2mds/man/import.fasta.Rd | 3 bios2mds-1.2.3/bios2mds/man/import.msf.Rd | 1 bios2mds-1.2.3/bios2mds/man/mmds.3D.plot.Rd | 1 bios2mds-1.2.3/bios2mds/man/write.mmds.pdb.Rd | 6 16 files changed, 130 insertions(+), 122 deletions(-)
Title: Basket Trial Analysis
Description: Implementation of multisource exchangeability models for Bayesian analyses of prespecified subgroups arising in the context of basket trial design and monitoring. The R 'basket' package facilitates implementation of the binary, symmetric multi-source exchangeability model (MEM) with posterior inference arising from both exact computation and Markov chain Monte Carlo sampling. Analysis output includes full posterior samples as well as posterior probabilities, highest posterior density (HPD) interval boundaries, effective sample sizes (ESS), mean and median estimations, posterior exchangeability probability matrices, and maximum a posteriori MEMs. In addition to providing "basketwise" analyses, the package includes similar calculations for "clusterwise" analyses for which subgroups are combined into meta-baskets, or clusters, using graphical clustering algorithms that treat the posterior exchangeability probabilities as edge weights. In addition plotting tools are provided to visualize basket and cluster densities as well as their exchangeability. References include Hyman, D.M., Puzanov, I., Subbiah, V., Faris, J.E., Chau, I., Blay, J.Y., Wolf, J., Raje, N.S., Diamond, E.L., Hollebecque, A. and Gervais, R (2015) <doi:10.1056/NEJMoa1502309>; Hobbs, B.P. and Landin, R. (2018) <doi:10.1002/sim.7893>; Hobbs, B.P., Kane, M.J., Hong, D.S. and Landin, R. (2018) <doi:10.1093/annonc/mdy457>; and Kaizer, A.M., Koopmeiners, J.S. and Hobbs, B.P. (2017) <doi:10.1093/biostatistics/kxx031>.
Author: Nan Chen [aut],
Brian Hobbs [aut],
Alex Kaizer [aut],
Michael J. Kane [aut, cre] (<https://orcid.org/0000-0003-1899-6662>)
Maintainer: Michael J. Kane <michael.kane@yale.edu>
Diff between basket versions 0.10.1 dated 2020-03-11 and 0.10.2 dated 2020-04-07
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 4 ++-- NEWS.md | 4 ++++ R/mem-exact.r | 3 ++- R/package-doc.r | 8 ++++---- R/plot.r | 16 +++++++++------- man/basket-package.Rd | 6 +++--- man/plot_mem.Rd | 34 +++++++++++++++++----------------- 9 files changed, 54 insertions(+), 47 deletions(-)
Title: Decorate a 'ggplot' with Associated Information
Description: For many times, we are not just aligning plots as what 'cowplot' and 'patchwork' did. Users would like to align associated information that requires axes to be exactly matched in subplots, e.g. hierarchical clustering with a heatmap. This package provides utilities to aligns associated subplots to a main plot at different sides (left, right, top and bottom) with axes exactly matched.
Author: Guangchuang Yu [aut, cre, cph]
(<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between aplot versions 0.0.3 dated 2020-03-30 and 0.0.4 dated 2020-04-07
DESCRIPTION | 6 +++--- MD5 | 10 +++++++--- NAMESPACE | 3 +++ NEWS.md |only R/axis.R | 11 +++++++++++ R/plot-list.R |only man/ggrange.Rd |only man/plot_list.Rd |only 8 files changed, 24 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-19 2.0.3
2017-07-13 2.0.1
2013-12-03 1.2.9
2012-03-22 1.2.7
2011-09-29 1.2.5
2010-04-29 1.2.3
2008-12-15 1.2.2
2008-09-10 1.2.1
2008-09-09 1.1.5
2007-10-07 1.1.3
2007-06-11 1.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-05 1.1-21
2019-02-04 1.1-20
2018-11-10 1.1-19
2018-08-17 1.1-18-1
2018-04-03 1.1-17
2018-03-28 1.1-16
2017-12-21 1.1-15
2017-09-27 1.1-14
2017-04-19 1.1-13
2016-04-16 1.1-12
2016-02-12 1.1-11
2015-10-06 1.1-10
2015-08-20 1.1-9
2015-06-22 1.1-8
2014-07-03 1.1-7
2014-04-13 1.1-6
2014-03-14 1.1-5
2014-02-02 1.0-6
2013-10-25 1.0-5
2013-09-11 1.0-4
2013-04-15 0.999999-2
2012-06-23 0.999999-0
2011-10-04 0.999375-42
2011-08-09 0.999375-41
2011-07-23 0.999375-40
2011-03-08 0.999375-39
2011-02-17 0.999375-38
2010-11-10 0.999375-37
2010-10-23 0.999375-36
2010-08-19 0.999375-35
2010-06-29 0.999375-34
2010-04-02 0.999375-33
2009-10-20 0.999375-32
2009-05-24 0.999375-31
2009-05-12 0.999375-30
2008-12-14 0.999375-28
2008-09-28 0.999375-27
2008-08-26 0.999375-26
2008-08-14 0.999375-25
2008-08-06 0.999375-24
2008-07-29 0.999375-23
2008-07-12 0.999375-22
2008-07-11 0.999375-21
2008-06-26 0.999375-19
2008-06-26 0.999375-20
2008-06-25 0.999375-18
2008-06-23 0.999375-17
2007-10-14 0.99875-9
2007-09-26 0.99875-8
2007-08-04 0.99875-7
2007-07-10 0.99875-5
2007-07-10 0.99875-6
2007-07-07 0.99875-4
2007-06-21 0.99875-2
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<https://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Arni Magnusson [aut, cre],
Colin Millar [aut],
Alexandros Kokkalis [ctb],
Ibrahim Umar [ctb]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between icesTAF versions 3.3-3 dated 2020-01-29 and 3.4-0 dated 2020-04-07
icesTAF-3.3-3/icesTAF/R/process.bib.R |only icesTAF-3.3-3/icesTAF/R/process.inner.R |only icesTAF-3.3-3/icesTAF/R/simplify.R |only icesTAF-3.3-3/icesTAF/data/catage.long.R |only icesTAF-3.3-3/icesTAF/data/catage.taf.R |only icesTAF-3.3-3/icesTAF/data/catage.xtab.R |only icesTAF-3.3-3/icesTAF/data/summary.taf.R |only icesTAF-3.3-3/icesTAF/data/taf.colors.R |only icesTAF-3.3-3/icesTAF/man/process.bib.Rd |only icesTAF-3.4-0/icesTAF/DESCRIPTION | 10 icesTAF-3.4-0/icesTAF/MD5 | 100 +++-- icesTAF-3.4-0/icesTAF/NAMESPACE | 13 icesTAF-3.4-0/icesTAF/NEWS | 250 +++++++------- icesTAF-3.4-0/icesTAF/R/clean.R | 17 icesTAF-3.4-0/icesTAF/R/clean.library.R | 7 icesTAF-3.4-0/icesTAF/R/clean.software.R | 17 icesTAF-3.4-0/icesTAF/R/cp.R | 10 icesTAF-3.4-0/icesTAF/R/download.github.R | 54 ++- icesTAF-3.4-0/icesTAF/R/draft.data.R | 2 icesTAF-3.4-0/icesTAF/R/draft.software.R | 6 icesTAF-3.4-0/icesTAF/R/flr2taf.R | 5 icesTAF-3.4-0/icesTAF/R/icesTAF-package.R | 26 - icesTAF-3.4-0/icesTAF/R/is.r.package.R |only icesTAF-3.4-0/icesTAF/R/long2xtab.R |only icesTAF-3.4-0/icesTAF/R/period.R | 1 icesTAF-3.4-0/icesTAF/R/process.bibfile.R |only icesTAF-3.4-0/icesTAF/R/process.entry.R |only icesTAF-3.4-0/icesTAF/R/taf.bootstrap.R | 14 icesTAF-3.4-0/icesTAF/R/taf.install.R | 11 icesTAF-3.4-0/icesTAF/R/taf.libPaths.R |only icesTAF-3.4-0/icesTAF/R/taf.png.R | 3 icesTAF-3.4-0/icesTAF/R/taf.session.R |only icesTAF-3.4-0/icesTAF/R/taf2long.R | 10 icesTAF-3.4-0/icesTAF/R/xtab2long.R |only icesTAF-3.4-0/icesTAF/R/xtab2taf.R | 9 icesTAF-3.4-0/icesTAF/data/catage.long.rda |only icesTAF-3.4-0/icesTAF/data/catage.taf.rda |only icesTAF-3.4-0/icesTAF/data/catage.xtab.rda |only icesTAF-3.4-0/icesTAF/data/summary.taf.rda |only icesTAF-3.4-0/icesTAF/data/taf.colors.rda |only icesTAF-3.4-0/icesTAF/man/catage.long.Rd | 6 icesTAF-3.4-0/icesTAF/man/catage.taf.Rd | 6 icesTAF-3.4-0/icesTAF/man/catage.xtab.Rd | 6 icesTAF-3.4-0/icesTAF/man/clean.Rd | 14 icesTAF-3.4-0/icesTAF/man/clean.library.Rd | 5 icesTAF-3.4-0/icesTAF/man/clean.software.Rd | 9 icesTAF-3.4-0/icesTAF/man/cp.Rd | 4 icesTAF-3.4-0/icesTAF/man/download.github.Rd | 4 icesTAF-3.4-0/icesTAF/man/draft.data.Rd | 2 icesTAF-3.4-0/icesTAF/man/draft.software.Rd | 6 icesTAF-3.4-0/icesTAF/man/icesTAF-internal.Rd | 15 icesTAF-3.4-0/icesTAF/man/icesTAF-package.Rd | 26 - icesTAF-3.4-0/icesTAF/man/is.r.package.Rd |only icesTAF-3.4-0/icesTAF/man/long2xtab.Rd |only icesTAF-3.4-0/icesTAF/man/period.Rd | 1 icesTAF-3.4-0/icesTAF/man/summary.taf.Rd | 6 icesTAF-3.4-0/icesTAF/man/taf.bootstrap.Rd | 13 icesTAF-3.4-0/icesTAF/man/taf.install.Rd | 3 icesTAF-3.4-0/icesTAF/man/taf.libPaths.Rd |only icesTAF-3.4-0/icesTAF/man/taf.session.Rd |only icesTAF-3.4-0/icesTAF/man/taf2long.Rd | 4 icesTAF-3.4-0/icesTAF/man/xtab2long.Rd |only icesTAF-3.4-0/icesTAF/man/xtab2taf.Rd | 4 icesTAF-3.4-0/icesTAF/tests/Examples/icesTAF-Ex.Rout.save | 156 +++++++- 64 files changed, 551 insertions(+), 304 deletions(-)
Title: Flexible Scan Statistics
Description: An easy way to conduct flexible scan.
Monte-Carlo method is used to test the spatial clusters given the cases, population, and shapefile.
A table with formal style and a map with clusters are included in the result report.
The method can be referenced at: Toshiro Tango and Kunihiko Takahashi (2005) <doi:10.1186/1476-072X-4-11>.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du <dgdzc@hotmail.com>
Diff between FlexScan versions 0.1.0 dated 2018-11-19 and 0.2.0 dated 2020-04-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/flexscan.R | 26 +++++++++++++++----------- man/flexscan.Rd | 2 +- 4 files changed, 22 insertions(+), 18 deletions(-)
Title: Nonparametric Methods for Generating High Quality Comparative
Effectiveness Evidence
Description: Implements novel nonparametric approaches to address
biases and confounding when comparing treatments or exposures in
observational studies of outcomes. While designed and appropriate for use
in studies involving medicine and the life sciences, the package can be
used in other situations involving outcomes with multiple confounders.
The package implements a family of methods for non-parametric bias correction
when comparing treatments in observational studies, including survival
analysis settings, where competing risks and/or censoring may be present.
The approach extends to bias-corrected personalized predictions of treatment
outcome differences, and analysis of heterogeneity of treatment effect-sizes
across patient subgroups.
Author: Nicolas R. Lauve [aut],
Stuart J. Nelson [aut],
S. Stanley Young [aut],
Robert L. Obenchain [aut],
Melania Pintilie [ctb],
Martin Kutz [ctb],
Christophe G. Lambert [aut, cre]
Maintainer: Christophe G. Lambert <cglambert@unm.edu>
Diff between LocalControl versions 1.1.2 dated 2019-02-24 and 1.1.2.1 dated 2020-04-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary data/cardSim.rda |binary data/framingham.rda |binary data/lindner.rda |binary inst/doc/LocalControl-jss-2018.pdf |binary 7 files changed, 9 insertions(+), 9 deletions(-)
Title: Preprocessing Algorithms for Imbalanced Datasets
Description: Class imbalance usually damages the performance of classifiers. Thus, it is
important to treat data before applying a classifier algorithm. This package
includes recent resampling algorithms in the literature: (Barua et al. 2014)
<doi:10.1109/tkde.2012.232>; (Das et al. 2015) <doi:10.1109/tkde.2014.2324567>,
(Zhang et al. 2014) <doi:10.1016/j.inffus.2013.12.003>; (Gao et al. 2014)
<doi:10.1016/j.neucom.2014.02.006>; (Almogahed et al. 2014)
<doi:10.1007/s00500-014-1484-5>. It also includes an useful interface to
perform oversampling.
Author: Ignacio Cordón [aut, cre],
Salvador García [aut],
Alberto Fernández [aut],
Francisco Herrera [aut]
Maintainer: Ignacio Cordón <nacho.cordon.castillo@gmail.com>
Diff between imbalance versions 1.0.2 dated 2019-12-18 and 1.0.2.1 dated 2020-04-07
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ build/vignette.rds |binary data/banana.rda |binary data/banana_orig.rda |binary data/ecoli1.rda |binary data/glass0.rda |binary data/haberman.rda |binary data/iris0.rda |binary data/newthyroid1.rda |binary data/wisconsin.rda |binary data/yeast4.rda |binary inst/doc/imbalance.pdf |binary 13 files changed, 15 insertions(+), 15 deletions(-)
Title: Group Sorted L1 Penalized Estimation
Description: Group SLOPE is a penalized linear regression method that is used
for adaptive selection of groups of significant predictors in a
high-dimensional linear model.
The Group SLOPE method can control the (group) false discovery rate at a
user-specified level (i.e., control the expected proportion of irrelevant
among all selected groups of predictors).
Author: Alexej Gossmann [aut, cre],
Damian Brzyski [aut],
Weijie Su [aut],
Malgorzata Bogdan [aut],
Ewout van den Berg [ctb] (Code adapted from 'SLOPE' version 0.1.3, as
well as from
http://statweb.stanford.edu/~candes/SortedL1/software.html under
GNU GPL-3),
Emmanuel Candes [ctb] (Code adapted from 'SLOPE' version 0.1.3, as well
as from http://statweb.stanford.edu/~candes/SortedL1/software.html
under GNU GPL-3),
Chiara Sabatti [ctb] (Code adapted from 'SLOPE' version 0.1.3, as well
as from http://statweb.stanford.edu/~candes/SortedL1/software.html
under GNU GPL-3),
Evan Patterson [ctb] (Code adapted from 'SLOPE' version 0.1.3, as well
as from http://statweb.stanford.edu/~candes/SortedL1/software.html
under GNU GPL-3)
Maintainer: Alexej Gossmann <alexej.go@googlemail.com>
Diff between grpSLOPE versions 0.2.1 dated 2016-11-20 and 0.3.0 dated 2020-04-07
grpSLOPE-0.2.1/grpSLOPE/tests/testthat/test_proximal_gradient_method.R |only grpSLOPE-0.3.0/grpSLOPE/DESCRIPTION | 39 grpSLOPE-0.3.0/grpSLOPE/MD5 | 47 grpSLOPE-0.3.0/grpSLOPE/NAMESPACE | 6 grpSLOPE-0.3.0/grpSLOPE/NEWS.md |only grpSLOPE-0.3.0/grpSLOPE/R/RcppExports.R |only grpSLOPE-0.3.0/grpSLOPE/R/SLOPE_solver.R |only grpSLOPE-0.3.0/grpSLOPE/R/grpslope.R | 305 ---- grpSLOPE-0.3.0/grpSLOPE/R/optimization.R |only grpSLOPE-0.3.0/grpSLOPE/R/prox.R |only grpSLOPE-0.3.0/grpSLOPE/R/utils.R | 16 grpSLOPE-0.3.0/grpSLOPE/README.md | 21 grpSLOPE-0.3.0/grpSLOPE/build/vignette.rds |binary grpSLOPE-0.3.0/grpSLOPE/inst/doc/basic-usage.html | 709 ++++++---- grpSLOPE-0.3.0/grpSLOPE/man/SLOPE_solver.Rd |only grpSLOPE-0.3.0/grpSLOPE/man/admmSolverGroupSLOPE.Rd |only grpSLOPE-0.3.0/grpSLOPE/man/coef.grpSLOPE.Rd | 1 grpSLOPE-0.3.0/grpSLOPE/man/getGroupID.Rd | 1 grpSLOPE-0.3.0/grpSLOPE/man/grpSLOPE.Rd | 7 grpSLOPE-0.3.0/grpSLOPE/man/lambdaGroupSLOPE.Rd | 3 grpSLOPE-0.3.0/grpSLOPE/man/predict.grpSLOPE.Rd | 1 grpSLOPE-0.3.0/grpSLOPE/man/proxGroupSortedL1.Rd | 18 grpSLOPE-0.3.0/grpSLOPE/man/prox_sorted_L1.Rd |only grpSLOPE-0.3.0/grpSLOPE/man/proximalGradientSolverGroupSLOPE.Rd | 23 grpSLOPE-0.3.0/grpSLOPE/man/sigma.Rd | 1 grpSLOPE-0.3.0/grpSLOPE/src |only grpSLOPE-0.3.0/grpSLOPE/tests/testthat/test_grpSLOPE.R | 66 grpSLOPE-0.3.0/grpSLOPE/tests/testthat/test_optimization_methods.R |only grpSLOPE-0.3.0/grpSLOPE/tests/testthat/test_prox.R |only 29 files changed, 596 insertions(+), 668 deletions(-)
Title: Clustering for Multivariate and Univariate Data Using
Expectation Maximization Algorithm
Description: Implements the Improved Expectation Maximisation EM* and the traditional EM algorithm for clustering
finite gaussian mixture models for both multivariate and univariate datasets. The initialization is done by randomly
selecting the samples from the dataset as the mean (meu) of the Gaussian(s). This version implements the faster alternative
EM* that avoids revisiting data by leveraging the heap structure. The algorithm returns a set of Gaussian
parameters-posterior probabilities, mean (meu), co-variance matrices (multivariate)/standard-deviation
(univariate) and priors. Reference: Hasan Kurban, Mark Jenne, Mehmet M. Dalkilic (2016) <doi:10.1007/s41060-017-0062-1>.
This work is partially supported by NCI Grant 1R01CA213466-01.
Author: Sharma Parichit [aut, cre, ctb],
Kurban Hasan [aut, ctb],
Jenne Mark [aut, ctb],
Dalkilic Mehmet [aut]
Maintainer: Sharma Parichit <parishar@iu.edu>
Diff between DCEM versions 2.0.1 dated 2020-02-28 and 2.0.2 dated 2020-04-07
DESCRIPTION | 12 +++-- MD5 | 57 ++++++++++++++------------ NEWS.md | 5 ++ R/dcem.R | 23 +++++++--- R/dcem_cluster_mv.R | 34 +++++++++++---- R/dcem_cluster_uv.R | 59 ++++++++++++++++++++++++--- R/dcem_em_utils.R | 18 +++++++- R/dcem_heap_util.R | 11 ++++- R/dcem_init_mv.R | 57 ++++++++++++++++---------- R/dcem_init_uv.R | 67 ++++++++++++++++++------------- R/dcem_star_cluster_mv.R | 47 ++++++++++++++-------- R/dcem_star_cluster_uv.R | 94 +++++++++++++++++++++++--------------------- R/dcem_star_train.R | 24 +++++++---- R/dcem_test.R | 21 +++++---- R/dcem_train.R | 21 +++++++-- R/ionosphere_data.R | 2 R/sanitycheck.R | 5 +- README.md | 23 ++++++---- build |only inst |only man/DCEM.Rd | 23 +++++++--- man/dcem_cluster_mv.Rd | 3 + man/dcem_cluster_uv.Rd | 3 + man/dcem_star_cluster_mv.Rd | 2 man/dcem_star_cluster_uv.Rd | 4 + man/dcem_star_train.Rd | 4 + man/dcem_test.Rd | 13 +++--- man/dcem_train.Rd | 4 + man/ionosphere_data.Rd | 6 +- vignettes |only 30 files changed, 425 insertions(+), 217 deletions(-)