Title: Interface to the 'Zoltar' Forecast Repository API
Description: 'Zoltar' <https://www.zoltardata.com/> is a website that provides a repository of model forecast results
in a standardized format and a central location. It supports storing, retrieving, comparing, and analyzing time
series forecasts for prediction challenges of interest to the modeling community. This package provides functions
for working with the 'Zoltar' API, including connecting and authenticating, getting information about projects,
models, and forecasts, deleting and uploading forecast data, and downloading scores.
Author: Matthew Cornell [aut, cre],
Nicholas Reich [aut, cph]
Maintainer: Matthew Cornell <cornell@umass.edu>
Diff between zoltr versions 0.5.0 dated 2020-04-10 and 0.5.1 dated 2020-04-14
DESCRIPTION | 6 ++--- MD5 | 22 ++++++++++---------- NEWS.md | 4 +++ R/model.R | 13 +++++++----- inst/doc/getting-started.Rmd | 6 ++--- inst/doc/getting-started.html | 31 ++++++++++++++--------------- inst/doc/project-owners.html | 19 +++++++++-------- man/upload_forecast.Rd | 12 +++++++++-- tests/testthat/data/forecasts-list.json | 2 + tests/testthat/data/upload-file-job-2.json | 2 - tests/testthat/test-model.R | 7 +++--- vignettes/getting-started.Rmd | 6 ++--- 12 files changed, 75 insertions(+), 55 deletions(-)
Title: A Modular, Integrated Approach to Maximum Entropy Distribution
Modeling
Description: Tools for training, selecting, and evaluating maximum entropy
(and standard logistic regression) distribution models. This package
provides tools for user-controlled transformation of explanatory variables,
selection of variables by nested model comparison, and flexible model
evaluation and projection. It follows principles based on the maximum-
likelihood interpretation of maximum entropy modeling, and uses infinitely-
weighted logistic regression for model fitting.
Author: Julien Vollering [aut, cre],
Sabrina Mazzoni [aut],
Rune Halvorsen [aut],
Steven Phillips [cph]
Maintainer: Julien Vollering <julien.vollering@hvl.no>
Diff between MIAmaxent versions 1.1.0 dated 2019-05-30 and 1.1.1 dated 2020-04-14
MIAmaxent-1.1.0/MIAmaxent/inst/extdata/1.lambdas |only MIAmaxent-1.1.1/MIAmaxent/DESCRIPTION | 6 ++--- MIAmaxent-1.1.1/MIAmaxent/MD5 | 14 ++++++------- MIAmaxent-1.1.1/MIAmaxent/NEWS.md | 4 +++ MIAmaxent-1.1.1/MIAmaxent/R/plotFOP.R | 4 +-- MIAmaxent-1.1.1/MIAmaxent/R/utils.R | 5 ++-- MIAmaxent-1.1.1/MIAmaxent/README.md | 3 +- MIAmaxent-1.1.1/MIAmaxent/inst/CITATION |only MIAmaxent-1.1.1/MIAmaxent/inst/doc/a-modeling-example.html | 6 ++--- 9 files changed, 24 insertions(+), 18 deletions(-)
Title: Multilingual Stopword Lists
Description: Provides multiple sources of stopwords, for use in text analysis and natural language processing.
Author: Kenneth Benoit [aut, cre],
David Muhr [aut],
Kohei Watanabe [aut]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between stopwords versions 1.0 dated 2019-07-24 and 2.0 dated 2020-04-14
DESCRIPTION | 10 - MD5 | 47 +++--- NAMESPACE | 4 NEWS.md | 9 + R/data.r | 87 +++++++++--- R/stopwords-options.R | 9 - R/stopwords-package.R | 22 +-- R/stopwords.R | 52 ++++--- R/use_stopwords.R |only README.md | 250 +++++++++++++++++++++++++---------- data/data_stopwords_ancient.rda |only data/data_stopwords_marimo.rda |only data/data_stopwords_misc.rda |binary data/data_stopwords_nltk.rda |only data/data_stopwords_stopwordsiso.rda |binary inst/WORDLIST | 20 +- inst/templates |only man/data_stopwords_ancient.Rd |only man/data_stopwords_marimo.Rd |only man/data_stopwords_misc.Rd | 24 +-- man/data_stopwords_nltk.Rd |only man/data_stopwords_smart.Rd | 15 -- man/data_stopwords_snowball.Rd | 12 - man/data_stopwords_stopwordsiso.Rd | 8 - man/lookup_iso_639_1.Rd | 4 man/stopwords-package.Rd | 28 ++- man/stopwords.Rd | 19 +- man/use_stopwords.Rd |only tests/testthat/test-stopwords.R | 25 +++ 29 files changed, 444 insertions(+), 201 deletions(-)
Title: A Server-Side File System Viewer for Shiny
Description: Provides functionality for client-side navigation of
the server side file system in shiny apps. In case the app is running
locally this gives the user direct access to the file system without the
need to "download" files to a temporary location. Both file and folder
selection as well as file saving is available.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
Vincent Nijs [aut],
Thomas Schaffner [aut],
Eric Nantz [aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between shinyFiles versions 0.7.5 dated 2019-11-18 and 0.8.0 dated 2020-04-14
DESCRIPTION | 8 MD5 | 28 +-- NEWS.md | 7 R/dirchoose.R | 11 + R/filechoose.R | 25 ++ R/filesave.R | 24 ++ inst/example/ui.R | 4 inst/www/shinyFiles.js | 373 +++++++++++++++++++++++++++++++++++++++++--- inst/www/styles.css | 48 ++++- man/fileGetter.Rd | 2 man/shinyFiles-buttons.Rd | 89 +++++++--- man/shinyFiles-observers.Rd | 44 +++-- man/shinyFiles-package.Rd | 4 man/shinyFiles-parsers.Rd | 9 - man/shinyFilesExample.Rd | 7 15 files changed, 581 insertions(+), 102 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.22 dated 2020-04-02 and 0.4.22-1 dated 2020-04-14
DESCRIPTION | 10 MD5 | 10 NEWS | 6 inst/doc/user-guide.html | 628 +++++++++++++++++++-------------------- man/photobiologyInOut-package.Rd | 2 tests/testthat/test-oo.R | 4 6 files changed, 335 insertions(+), 325 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Plot Null Hypothesis Significance Tests
Description: Illustrate graphically the most common Null Hypothesis Significance Testing procedures. More specifically, this package provides functions to plot Chi-Squared, F, t (one- and two-tailed) and z (one- and two-tailed) tests, by plotting the probability density under the null hypothesis as a function of the different test statistic values. Although highly flexible (color theme, fonts, etc.), only the minimal number of arguments (observed test statistic, degrees of freedom) are necessary for a clear and useful graph to be plotted, with the observed test statistic and the p value, as well as their corresponding value labels. The axes are automatically scaled to present the relevant part and the overall shape of the probability density function. This package is especially intended for education purposes, as it provides a helpful support to help explain the Null Hypothesis Significance Testing process, its use and/or shortcomings.
Author: Nils Myszkowski [aut, cre] (<https://orcid.org/0000-0003-1322-0777>)
Maintainer: Nils Myszkowski <nmyszkowski@pace.edu>
Diff between nhstplot versions 1.0.1 dated 2016-11-19 and 1.1.0 dated 2020-04-14
DESCRIPTION | 17 +- MD5 | 32 +-- NEWS.md | 11 - R/plot.chisqtest.R | 99 +++++++----- R/plot.ftest.R | 85 +++++++--- R/plot.ttest.R | 84 ++++++---- R/plot.ztest.R | 61 ++++--- README.md | 120 +++----------- build/vignette.rds |binary inst/doc/nhstplot.R | 54 ++++-- inst/doc/nhstplot.Rmd | 55 ++++++ inst/doc/nhstplot.html | 397 ++++++++++++++++++++++++++++++++++++++++++------- man/plotchisqtest.Rd | 79 +++++---- man/plotftest.Rd | 76 +++++---- man/plotttest.Rd | 79 +++++---- man/plotztest.Rd | 64 ++++--- vignettes/nhstplot.Rmd | 55 ++++++ 17 files changed, 914 insertions(+), 454 deletions(-)
Title: Ecosystem and Canopy Structural Complexity Metrics from LiDAR
Description: Provides a toolkit for calculating forest and canopy structural complexity metrics from
terrestrial LiDAR (light detection and ranging). References: Atkins et al. 2018 <doi:10.1111/2041-210X.13061>; Hardiman et al. 2013 <doi:10.3390/f4030537>;
Parker et al. 2004 <doi:10.1111/j.0021-8901.2004.00925.x>.
Author: Jeff Atkins [aut, cre],
Gil Bohrer [aut],
Robert Fahey [aut],
Brady Hardiman [aut],
Chrisopher Gough [aut],
Timothy Morin [aut],
Atticus Stovall [aut],
Naupaka Zimmerman [ctb, aut],
Chris Black [ctb]
Maintainer: Jeff Atkins <jwatkins6@vcu.edu>
Diff between forestr versions 2.0.1 dated 2020-01-31 and 2.0.2 dated 2020-04-14
forestr-2.0.1/forestr/R/combine_variables.R |only forestr-2.0.1/forestr/man/combine_variables.Rd |only forestr-2.0.2/forestr/DESCRIPTION | 9 forestr-2.0.2/forestr/MD5 | 42 forestr-2.0.2/forestr/NAMESPACE | 1 forestr-2.0.2/forestr/R/calc_intensity.R | 1 forestr-2.0.2/forestr/R/calc_rugosity.R | 3 forestr-2.0.2/forestr/R/calc_tls_mean_leaf_ht.R | 7 forestr-2.0.2/forestr/R/csc_metrics.R | 3 forestr-2.0.2/forestr/R/plot_hit_grid.R | 1 forestr-2.0.2/forestr/R/plot_pavd.R | 52 forestr-2.0.2/forestr/R/process_multi_pcl.R | 71 forestr-2.0.2/forestr/R/process_pcl.R | 65 forestr-2.0.2/forestr/R/process_tls.R | 34 forestr-2.0.2/forestr/inst/pcl-vignette.html | 1138 +++++----- forestr-2.0.2/forestr/inst/pcl-vignette_files/MathJax.js.download | 38 forestr-2.0.2/forestr/man/calc_intensity.Rd | 1 forestr-2.0.2/forestr/man/calc_rugosity.Rd | 4 forestr-2.0.2/forestr/man/calc_tls_mean_leaf_ht.Rd | 4 forestr-2.0.2/forestr/man/csc_metrics.Rd | 2 forestr-2.0.2/forestr/man/plot_hit_grid.Rd | 1 forestr-2.0.2/forestr/man/plot_pavd.Rd | 14 forestr-2.0.2/forestr/man/process_multi_pcl.Rd | 5 23 files changed, 747 insertions(+), 749 deletions(-)
Title: Ensemble Boolean Model Biomarker Analysis
Description: Analysis and visualization of an ensemble of boolean models for
biomarker discovery in cancer cell networks. The package allows to easily
import the data results of a software pipeline that predicts synergistic drug
combinations in cancer cell lines, developed by the DrugLogics research group
in NTNU. It has generic functions that can be used to split a boolean model
dataset to model groups with regards to the models predictive performance (number of true
positive predictions or Matthews correlation coefficient score) or synergy prediction based on a given set
of observed synergies and find the average activity difference per network
node between all group pairs. Thus, given user-specific thresholds,
important nodes (biomarkers) can be accessed in the sense that they make the
models predict specific synergies (synergy biomarkers) or have better
performance in general (performance biomarkers). Lastly, if the
boolean models have a specific equation form and differ only in their link operator,
link operator biomarkers can also be assessed.
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between emba versions 0.1.2 dated 2020-02-06 and 0.1.4 dated 2020-04-14
DESCRIPTION | 11 +++--- MD5 | 24 ++++++++------ NAMESPACE | 2 + NEWS.md | 11 ++++++ R/general.R | 59 +++++++++++++++++++++++++++--------- R/input.R | 56 ++++++++++++++++++++++++++++++++++ R/sysdata.rda |only README.md | 2 - inst/extdata/ensemblewise_synergies |only inst/extdata/modelwise_synergies |only man/biomarker_mcc_analysis.Rd | 12 ++++++- man/biomarker_synergy_analysis.Rd | 12 ++++++- man/biomarker_tp_analysis.Rd | 12 ++++++- man/get_synergy_scores.Rd |only tests/testthat/test-analysis.R | 6 --- 15 files changed, 166 insertions(+), 41 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
'batchtools'
Description: Implementation of the Future API on top of the 'batchtools' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future.apply::future_lapply(files, FUN = process)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.batchtools versions 0.8.1 dated 2019-10-01 and 0.9.0 dated 2020-04-14
DESCRIPTION | 10 +-- MD5 | 70 +++++++++++++------------ NAMESPACE | 1 NEWS | 52 +++++++++++++++++- R/BatchtoolsFuture-class.R | 76 +++++++++++++++++++-------- R/batchtools_custom.R | 23 +++++--- R/batchtools_interactive.R | 4 + R/batchtools_local.R | 6 +- R/batchtools_multicore.R | 7 +- R/batchtools_template.R | 32 ++++++----- R/future.batchtools-package.R | 1 R/future_cache_path.R | 2 R/nbrOfWorkers.R | 48 +++++++++++++++-- R/options.R |only R/temp_registry.R | 34 ++++++++++-- R/zzz.R | 4 + build/vignette.rds |binary inst/doc/future.batchtools.html | 2 inst/doc/future.batchtools.md.rsp | 2 inst/templates-for-R_CMD_check |only man/BatchtoolsFuture.Rd | 47 +++++++++++----- man/await.BatchtoolsFuture.Rd | 8 ++ man/batchtools_custom.Rd | 76 ++++++++++++++++++++++----- man/batchtools_local.Rd | 31 +++++++---- man/batchtools_multicore.Rd | 20 +++++-- man/batchtools_template.Rd | 103 +++++++++++++++++++++++++++---------- man/delete.BatchtoolsFuture.Rd | 13 +++- man/future.batchtools.Rd | 10 ++- man/future.batchtools.options.Rd |only tests/batchtools_custom.R | 23 +++++--- tests/batchtools_hpc.R | 6 +- tests/incl/start,load-only.R | 53 +++++++++++++++---- tests/nbrOfWorkers.R | 3 + tests/plan.R | 25 ++++++++ tests/zzz,future_lapply.R | 34 +++++++----- vignettes/future.batchtools.md.rsp | 2 36 files changed, 609 insertions(+), 219 deletions(-)
More information about future.batchtools at CRAN
Permanent link
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write data from neuroimaging files in 'FreeSurfer' <http://freesurfer.net/> binary formats. This includes the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between freesurferformats versions 0.1.8 dated 2020-02-17 and 0.1.9 dated 2020-04-14
DESCRIPTION | 9 MD5 | 127 +++--- NAMESPACE | 4 R/mgh2nii.R |only R/mghheader.R | 144 +++++++ R/read_fs_curv.R | 25 + R/read_fs_mgh.R | 62 ++- R/read_fs_surface.R | 86 +++- R/read_nisurface.R | 2 R/write_fs_curv.R | 6 R/write_fs_mgh.R | 130 +++++- R/write_fs_surface.R | 76 +++ build/vignette.rds |binary inst/doc/freesurferformats.R | 46 +- inst/doc/freesurferformats.html | 424 +++++---------------- inst/doc/freesurferformats_header.R | 12 inst/doc/freesurferformats_header.html | 300 ++------------ inst/doc/freesurferformats_write.R | 19 inst/doc/freesurferformats_write.Rmd | 44 +- inst/doc/freesurferformats_write.html | 381 ++++-------------- man/check.dtype.for.data.Rd |only man/colortable.from.annot.Rd | 14 man/fs.get.morph.file.ext.for.format.Rd | 17 man/fs.get.morph.file.format.from.filename.Rd | 17 man/fs.patch.Rd | 6 man/fs.volume.from.oro.nifti.Rd |only man/mghheader.Rd |only man/mghheader.centervoxelRAS.from.firstvoxelRAS.Rd |only man/mghheader.is.ras.valid.Rd | 13 man/mghheader.ras2vox.Rd | 13 man/mghheader.ras2vox.tkreg.Rd | 13 man/mghheader.scanner2tkreg.Rd | 13 man/mghheader.tkreg2scanner.Rd | 13 man/mghheader.update.from.vox2ras.Rd |only man/mghheader.vox2ras.Rd | 13 man/mghheader.vox2ras.tkreg.Rd | 13 man/nifti.space.info.Rd |only man/nifti.time.info.Rd |only man/nifti.transform.type.name.Rd |only man/read.fs.annot.Rd | 12 man/read.fs.colortable.Rd | 14 man/read.fs.curv.Rd | 19 man/read.fs.curv.txt.Rd |only man/read.fs.label.Rd | 11 man/read.fs.mgh.Rd | 28 - man/read.fs.morph.Rd | 17 man/read.fs.patch.Rd | 7 man/read.fs.patch.asc.Rd | 6 man/read.fs.surface.Rd | 17 man/read.fs.surface.asc.Rd | 13 man/read.fs.surface.vtk.Rd |only man/read.fs.weight.Rd | 16 man/read_nisurface.Rd | 15 man/read_nisurfacefile.Rd | 16 man/readable.files.Rd | 8 man/write.fs.annot.Rd | 18 man/write.fs.colortable.Rd | 14 man/write.fs.curv.Rd | 17 man/write.fs.label.Rd | 12 man/write.fs.mgh.Rd | 29 - man/write.fs.morph.Rd | 21 - man/write.fs.patch.Rd | 7 man/write.fs.surface.Rd | 17 man/write.fs.surface.asc.Rd | 13 man/write.fs.surface.vtk.Rd |only man/write.fs.weight.Rd | 17 tests/testthat/test-mgh2nii.R |only tests/testthat/test-mghheader.R | 46 ++ tests/testthat/test-write-fs-mgh.R | 23 + tests/testthat/test-write-fs-surface.R | 15 vignettes/freesurferformats_write.Rmd | 44 +- 71 files changed, 1306 insertions(+), 1228 deletions(-)
More information about freesurferformats at CRAN
Permanent link
Title: Simple Features for R
Description: Support for simple features, a standardized way to
encode spatial vector data. Binds to 'GDAL' for reading and writing
data, to 'GEOS' for geometrical operations, and to 'PROJ' for
projection conversions and datum transformations.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Kirill Müller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.9-1 dated 2020-04-06 and 0.9-2 dated 2020-04-14
DESCRIPTION | 8 +- LICENSE | 2 MD5 | 111 +++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 20 ++++- R/crs.R | 8 +- R/gdal_utils.R | 4 - R/geom.R | 2 R/init.R | 35 +++++---- R/read.R | 2 R/transform.R | 35 +++++---- configure | 20 ++--- configure.ac | 20 ++--- inst/doc/sf1.html | 18 ++-- inst/doc/sf2.html | 18 +++- inst/doc/sf3.html | 10 ++ inst/doc/sf4.html | 12 ++- inst/doc/sf5.html | 18 ++-- inst/doc/sf6.html | 12 ++- inst/docker/bionic |only inst/docker/fedora/Dockerfile | 20 ++++- man/sf_project.Rd | 8 +- man/st_crs.Rd | 8 +- man/st_write.Rd | 2 src/RcppExports.cpp | 4 - src/gdal.cpp | 4 + src/gdal_utils.cpp | 41 ++++++----- src/proj.cpp | 12 +-- tests/aggregate.Rout.save | 2 tests/cast.Rout.save | 2 tests/crs.R | 2 tests/crs.Rout.save | 4 - tests/dist.Rout.save | 2 tests/dplyr.Rout.save | 2 tests/empty.Rout.save | 2 tests/gdal_geom.Rout.save | 2 tests/geos.Rout.save | 2 tests/graticule.Rout.save | 2 tests/grid.Rout.save | 2 tests/maps.Rout.save | 2 tests/plot.Rout.save | 2 tests/read.Rout.save | 2 tests/roundtrip.Rout.save | 4 - tests/sample.Rout.save | 2 tests/sfc.Rout.save | 4 - tests/sfg.Rout.save | 2 tests/spatstat.Rout.save | 4 - tests/stars.Rout.save | 20 ++--- tests/testthat.R | 2 tests/testthat.Rout.save | 13 --- tests/testthat/test_gdal.R | 1 tests/testthat/test_geos.R | 2 tests/testthat/test_postgis_ODBC.R | 1 tests/testthat/test_postgis_RPostgreSQL.R | 1 tests/testthat/test_postgis_RPostgres.R | 1 tests/units.Rout.save | 2 tests/wkb.Rout.save | 2 57 files changed, 316 insertions(+), 230 deletions(-)
Title: Setup and connect to 'OpenTripPlanner'
Description: Setup and connect to 'OpenTripPlanner' (OTP) <http://www.opentripplanner.org/>.
OTP is an open source platform for multi-modal and multi-agency
journey planning written in 'Java'. The package allows you to manage a local version or
connect to remote OTP server.
This package has been peer-reviewed by rOpenSci (v. 0.2.0.0).
Author: Malcolm Morgan [aut, cre] (<https://orcid.org/0000-0002-9488-9183>),
Marcus Young [aut] (<https://orcid.org/0000-0003-4627-1116>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>),
Layik Hama [ctb] (<https://orcid.org/0000-0003-1912-4890>)
Maintainer: Malcolm Morgan <m.morgan1@leeds.ac.uk>
Diff between opentripplanner versions 0.2.0.8 dated 2020-02-06 and 0.2.1.0 dated 2020-04-14
DESCRIPTION | 9 MD5 | 107 +- NAMESPACE | 31 NEWS.md | 46 - R/data.R |only R/opentripplanner-package.R | 16 R/otp-config.R | 1396 +++++++++++++++---------------- R/otp-connect.R | 350 +++---- R/otp-download.R | 140 +-- R/otp-geocode.R | 200 ++-- R/otp-isochrone-batch.R |only R/otp-isochrone.R | 212 ++-- R/otp-plan.R | 1383 +++++++++++++++--------------- R/otp-routing-options.R |only R/otp-setup.R | 708 ++++++++------- README.md | 254 ++--- build/vignette.rds |binary data |only inst/CITATION | 40 inst/doc/advanced_features.R | 221 ++-- inst/doc/advanced_features.Rmd | 457 +++++----- inst/doc/advanced_features.html | 980 ++++++++++----------- inst/doc/known_issues.Rmd | 126 +- inst/doc/known_issues.html | 592 ++++++------- inst/doc/opentripplanner.R | 120 +- inst/doc/opentripplanner.Rmd | 466 +++++----- inst/doc/opentripplanner.html | 941 ++++++++++---------- inst/doc/prerequisites.R | 4 inst/doc/prerequisites.Rmd | 215 ++-- inst/doc/prerequisites.html | 645 +++++++------- man/figures/logo.png |binary man/figures/logo_social.png |only man/json_example_drive.Rd |only man/json_example_transit.Rd |only man/opentripplanner-package.Rd | 80 - man/otp_build_graph.Rd | 157 +-- man/otp_check_java.Rd |only man/otp_connect.Rd | 144 +-- man/otp_dl_demo.Rd | 73 - man/otp_dl_jar.Rd | 89 - man/otp_geocode.Rd | 118 +- man/otp_isochrone.Rd | 154 +-- man/otp_make_config.Rd | 77 - man/otp_plan.Rd | 265 ++--- man/otp_routing_options.Rd |only man/otp_setup.Rd | 181 ++-- man/otp_stop.Rd | 83 - man/otp_validate_config.Rd | 81 - man/otp_validate_routing_options.Rd |only man/otp_write_config.Rd | 73 - tests/testthat.R | 8 tests/testthat/test_01_internal_funcs.R | 356 ++++--- tests/testthat/test_02_without_OTP.R | 435 ++++----- tests/testthat/test_03_with_OTP.R | 458 +++++----- tests/testthat/test_04_with_public_API.R | 88 - vignettes/advanced_features.Rmd | 457 +++++----- vignettes/known_issues.Rmd | 126 +- vignettes/opentripplanner.Rmd | 466 +++++----- vignettes/prerequisites.Rmd | 215 ++-- 59 files changed, 6991 insertions(+), 6852 deletions(-)
More information about opentripplanner at CRAN
Permanent link
Title: Testing Infrastructure for Broom Model Generics
Description: Provides a number of testthat tests that can be
used to verify that tidy(), glance() and augment() methods meet
consistent specifications. This allows methods for the same generic
to be spread across multiple packages, since all of those packages
can make the same guarantees to users about returned objects.
Author: Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>)
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between modeltests versions 0.1.0 dated 2020-02-29 and 0.1.1 dated 2020-04-14
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/augment_data_helper.R | 8 ++++++-- R/check_augment_data_specification.R | 5 +++-- tests/testthat/test-check_augment_data_specification.R | 6 +++--- 5 files changed, 20 insertions(+), 15 deletions(-)
Title: Multiples Comparisons Procedures Based on Studentized Midrange
and Range Distributions
Description: Apply tests of multiple comparisons based
on studentized midrange and range distributions.
The tests are: Tukey Midrange (TM test),
Student-Newman-Keuls Midrange (SNKM test),
Means Grouping Midrange (MGM test) and
Means Grouping Range (MGR test). The articles of these
tests are in the submission phase, and we will soon update the references.
Author: Ben Deivide [aut, cre],
Daniel Furtado [aut],
Diego Arthur [ctb]
Maintainer: Ben Deivide <ben.deivide@ufsj.edu.br>
Diff between midrangeMCP versions 2.0 dated 2020-04-11 and 2.1 dated 2020-04-14
DESCRIPTION | 18 ++-- MD5 | 14 ++- R/MRtest.R | 9 +- R/MRwrite.R | 3 R/globalvariables.R | 2 R/guimidrangeMCP.R | 199 +++++++++++++++++++++++++++------------------------- inst |only po |only 8 files changed, 129 insertions(+), 116 deletions(-)
Title: Latin Hypercube Designs (LHDs) Algorithms
Description: Contains functions for finding space-filling Latin Hypercube Designs (LHDs), e.g. maximin distance LHDs. Unlike other packages, our package is particularly useful in the area of Design and Analysis of Experiments (DAE). More specifically, it is very useful in design of computer experiments. One advantage of our package is its comprehensiveness. It contains a variety of heuristic algorithms (and their modifications) for searching maximin distance LHDs. In addition to that, it also contains other useful tools for developing and constructing maximin distance LHDs. Please refer to the function documentations for the detailed references of each function. Among all the references we used, one reference should be highlighted here, which is Ruichen Jin, Wei Chen, Agus Sudjianto (2005) <doi:10.1016/j.jspi.2004.02.014>. They provided a new form of phi_p criterion, which does not lose the space-filling property and simultaneously reduces the computational complexity when evaluating (or re-evaluating) an LHD. Their new phi_p criterion is a fundamental component of our many functions. Besides, the computation nature of the new phi_p criterion enables our functions to have less CPU time.
Author: Hongzhi Wang, Qian Xiao, Abhyuday Mandal
Maintainer: Hongzhi Wang <hw34508@uga.edu>
Diff between LHD versions 0.1.2 dated 2019-10-22 and 0.1.3 dated 2020-04-14
DESCRIPTION | 10 ++++----- MD5 | 12 +++++----- NEWS.md | 3 ++ R/SLHD.R | 28 ++++++++++++++++++------- build/vignette.rds |binary inst/doc/Vignette_for_LHD.R | 22 ++++++++++---------- inst/doc/Vignette_for_LHD.html | 45 +++++++++++++++++++---------------------- 7 files changed, 66 insertions(+), 54 deletions(-)
Title: Deprecated 'TK' Widget Tools for 'rgl'
Description: 'TK' widget tools for the 'rgl' package have been moved to 'rgl'.
Author: Duncan Murdoch/Ming Chen
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between tkrgl versions 0.8 dated 2018-05-16 and 0.9 dated 2020-04-14
tkrgl-0.8/tkrgl/R/par3dsave.R |only tkrgl-0.8/tkrgl/R/spin3d.R |only tkrgl-0.8/tkrgl/man/par3dsave.Rd |only tkrgl-0.8/tkrgl/man/spin3d.Rd |only tkrgl-0.8/tkrgl/man/spinControl.Rd |only tkrgl-0.9/tkrgl/DESCRIPTION | 17 +++++++---------- tkrgl-0.9/tkrgl/MD5 | 14 +++++--------- tkrgl-0.9/tkrgl/NAMESPACE | 6 ++---- tkrgl-0.9/tkrgl/R/zzz.R |only tkrgl-0.9/tkrgl/build/partial.rdb |binary tkrgl-0.9/tkrgl/man/tkrgl-package.Rd | 33 ++++++++++++++++++++++++++------- 11 files changed, 40 insertions(+), 30 deletions(-)
Title: Functions for Phylogenetically Based Statistical Analyses
Description: Manipulation and analysis of phylogenetically simulated
data sets and phylogenetically based analyses using GLS.
Author: Ramon Diaz-Uriarte <rdiaz@cnio.es> and Theodore Garland, Jr
<theodore.garland@ucr.edu>
Maintainer: Ramon Diaz-Uriarte <rdiaz02@gmail.com>
Diff between PHYLOGR versions 1.0.10 dated 2018-03-20 and 1.0.11 dated 2020-04-14
PHYLOGR-1.0.10/PHYLOGR/INDEX |only PHYLOGR-1.0.10/PHYLOGR/data/GarlandJanis.IC.txt.gz |only PHYLOGR-1.0.10/PHYLOGR/data/GarlandJanis.Original.txt.gz |only PHYLOGR-1.0.10/PHYLOGR/data/GarlandJanis.varcov.txt.gz |only PHYLOGR-1.0.10/PHYLOGR/data/Lacertid.IC.txt.gz |only PHYLOGR-1.0.10/PHYLOGR/data/Lacertid.Original.txt.gz |only PHYLOGR-1.0.10/PHYLOGR/data/Lacertid.varcov.txt.gz |only PHYLOGR-1.0.10/PHYLOGR/data/SimulExample.txt.gz |only PHYLOGR-1.0.11/PHYLOGR/DESCRIPTION | 9 ++-- PHYLOGR-1.0.11/PHYLOGR/MD5 | 26 ++++++------ PHYLOGR-1.0.11/PHYLOGR/data/GarlandJanis.IC.txt |only PHYLOGR-1.0.11/PHYLOGR/data/GarlandJanis.Original.txt |only PHYLOGR-1.0.11/PHYLOGR/data/GarlandJanis.varcov.txt |only PHYLOGR-1.0.11/PHYLOGR/data/Lacertid.IC.txt |only PHYLOGR-1.0.11/PHYLOGR/data/Lacertid.Original.txt |only PHYLOGR-1.0.11/PHYLOGR/data/Lacertid.varcov.txt |only PHYLOGR-1.0.11/PHYLOGR/data/SimulExample.txt |only PHYLOGR-1.0.11/PHYLOGR/inst/Examples/Examples-code.R | 23 +++++++--- PHYLOGR-1.0.11/PHYLOGR/inst/NEWS |only PHYLOGR-1.0.11/PHYLOGR/man/GarlandJanis.Original.Rd | 32 +++++++++------ PHYLOGR-1.0.11/PHYLOGR/man/GarlandJanis.varcov.Rd | 18 ++++---- PHYLOGR-1.0.11/PHYLOGR/man/cor.origin.Rd | 14 +++--- 22 files changed, 74 insertions(+), 48 deletions(-)
Title: Modular Approach to Dose Finding Clinical Trials
Description: Methods for working with dose-finding clinical trials. We start by
providing a common interface to various dose-finding methodologies like the
continual reassessment method (CRM) by O'Quigley et al. (1990)
<doi:10.2307/2531628>, the Bayesian optimal interval design (BOIN) by Liu &
Yuan (2015) <doi:10.1111/rssc.12089>, and the 3+3 described by Korn et al.
(1994) <doi:10.1002/sim.4780131802>. We then add optional embellishments to
provide extra desirable behaviour, like avoiding skipping doses, stopping
after n patients have been treated at the recommended dose, or demanding
that n patients are treated before stopping is allowed. By daisy-chaining
together these embellishments using the pipe operator from 'magrittr', it is
simple to tailor the behaviour of dose-finding designs so that they do what
you want. Furthermore, using this flexible interface for creating
dose-finding designs, it is simple to run simulations or calculate
dose-pathways for future cohorts of patients.
Author: Kristian Brock [aut, cre] (<https://orcid.org/0000-0002-3921-0166>)
Maintainer: Kristian Brock <kristian.brock@gmail.com>
Diff between escalation versions 0.1.1 dated 2020-03-08 and 0.1.2 dated 2020-04-14
DESCRIPTION | 10 MD5 | 166 ++-- NAMESPACE | 89 ++ NEWS.md | 8 R/boin_selector.R | 89 +- R/calculate_probabilities.R |only R/crystallised_dose_paths.R |only R/demand_n_at_dose.R | 54 - R/derived_dose_selector.R | 68 - R/derived_dose_selector_factory.R | 10 R/dfcrm_selector.R | 131 +-- R/dont_skip_doses.R | 16 R/dose_finding_path_node.R |only R/dose_paths.R |only R/follow_path.R | 57 - R/get_dose_paths.R |only R/graph_paths.R |only R/helpers.R | 19 R/interface.R | 176 +++- R/num_cohort_outcomes.R |only R/num_dose_path_nodes.R |only R/phase1_dose_paths.R |only R/phase1_sim.R |only R/select_dose_by_cibp.R | 16 R/selector.R | 154 +++- R/simulate_trials.R |only R/simulations.R |only R/spread_paths.R |only R/stop_at_n_selector.R | 6 R/stop_when_n_at_dose_selector.R | 22 R/stop_when_too_toxic.R | 36 R/stop_when_tox_ci_covered.R | 32 R/three_plus_three_selector.R | 66 - R/tox_selector_factory.R |only R/try_rescue_dose.R |only README.md | 950 +++++++++++++++++++++---- build/vignette.rds |binary inst/doc/DosePaths.R |only inst/doc/DosePaths.Rmd |only inst/doc/DosePaths.html |only inst/doc/DoseSelectorInterface.R | 14 inst/doc/DoseSelectorInterface.Rmd | 44 + inst/doc/DoseSelectorInterface.html | 103 ++ inst/doc/Simulation.R |only inst/doc/Simulation.Rmd |only inst/doc/Simulation.html |only man/as_tibble.dose_paths.Rd |only man/calculate_probabilities.Rd |only man/cohort.Rd | 4 man/cohorts_of_n.Rd |only man/continue.Rd | 4 man/crystallised_dose_paths.Rd |only man/dose_indices.Rd | 4 man/dose_paths.Rd |only man/dose_paths_function.Rd |only man/doses_given.Rd | 4 man/empiric_tox_rate.Rd | 4 man/figures |only man/get_dose_paths.Rd |only man/graph_paths.Rd |only man/mean_prob_tox.Rd | 4 man/median_prob_tox.Rd | 4 man/model_frame.Rd | 4 man/n_at_dose.Rd | 4 man/n_at_recommended_dose.Rd |only man/num_cohort_outcomes.Rd |only man/num_dose_path_nodes.Rd |only man/num_doses.Rd | 4 man/num_patients.Rd | 4 man/num_tox.Rd | 4 man/prob_administer.Rd | 4 man/prob_recommend.Rd |only man/prob_tox_exceeds.Rd | 4 man/prob_tox_quantile.Rd | 4 man/prob_tox_samples.Rd | 4 man/recommended_dose.Rd | 4 man/selector.Rd | 2 man/simulate_trials.Rd |only man/simulation_function.Rd |only man/simulations.Rd |only man/spread_paths.Rd |only man/supports_sampling.Rd | 4 man/tox.Rd | 4 man/tox_at_dose.Rd | 4 man/tox_target.Rd | 4 man/trial_duration.Rd |only man/try_rescue_dose.Rd |only tests/testthat/test_boin.R | 51 + tests/testthat/test_crystallised_dose_paths.R |only tests/testthat/test_demand_n_at_dose.R | 76 +- tests/testthat/test_dfcrm.R | 51 + tests/testthat/test_dont_skip_doses.R | 51 + tests/testthat/test_dose_paths.R |only tests/testthat/test_follow_path.R | 55 + tests/testthat/test_num_cohort_outcomes.R |only tests/testthat/test_num_dose_path_nodes.R |only tests/testthat/test_select_dose_by_cibp.R | 51 + tests/testthat/test_simulate_trials.R |only tests/testthat/test_stop_at_n_selector.R | 51 + tests/testthat/test_stop_when_n_at_dose.R | 51 + tests/testthat/test_stop_when_too_toxic.R | 51 + tests/testthat/test_stop_when_tox_ci_covered.R | 51 + tests/testthat/test_three_plus_three.R | 103 ++ tests/testthat/test_try_rescue_dose.R |only vignettes/DosePaths.Rmd |only vignettes/DoseSelectorInterface.Rmd | 44 + vignettes/Simulation.Rmd |only vignettes/library.bib | 112 ++ 108 files changed, 2607 insertions(+), 613 deletions(-)
Title: Client to United Kingdom Land Registry
Description: Access data from Land Registry Open Data
<http://landregistry.data.gov.uk/> through 'SPARQL' queries. 'uklr'
supports the house price index, transaction and price paid data.
Author: Kostas Vasilopoulos [aut, cre]
(<https://orcid.org/0000-0002-9769-6395>)
Maintainer: Kostas Vasilopoulos <k.vasilopoulo@gmail.com>
Diff between uklr versions 1.0.0 dated 2019-12-18 and 1.0.1 dated 2020-04-14
uklr-1.0.0/uklr/man/get_query.Rd |only uklr-1.0.1/uklr/DESCRIPTION | 24 ++++---- uklr-1.0.1/uklr/MD5 | 42 ++++++++------ uklr-1.0.1/uklr/NAMESPACE | 9 ++- uklr-1.0.1/uklr/NEWS.md | 14 ++++ uklr-1.0.1/uklr/R/avail-ons.R | 5 + uklr-1.0.1/uklr/R/avail-ukppd.R | 17 ++++-- uklr-1.0.1/uklr/R/build-sparql.R | 39 ++++++++----- uklr-1.0.1/uklr/R/definitions.R | 33 ++++++++++- uklr-1.0.1/uklr/R/depracate.R |only uklr-1.0.1/uklr/R/get.R | 22 +++++++ uklr-1.0.1/uklr/R/query.R | 42 +++++++++++++- uklr-1.0.1/uklr/R/utils.R | 16 +++-- uklr-1.0.1/uklr/README.md | 43 +++++++++------ uklr-1.0.1/uklr/inst/WORDLIST | 2 uklr-1.0.1/uklr/man/ons_pc.Rd | 32 +++++------ uklr-1.0.1/uklr/man/pc.Rd | 34 ++++++------ uklr-1.0.1/uklr/man/retrieve_query.Rd |only uklr-1.0.1/uklr/man/uklr-deprecated.Rd |only uklr-1.0.1/uklr/man/uklr_browse.Rd | 46 ++++++++-------- uklr-1.0.1/uklr/man/uklr_def.Rd | 59 ++++++++++----------- uklr-1.0.1/uklr/man/ukppd_get.Rd | 4 + uklr-1.0.1/uklr/tests/testthat/helpers.R |only uklr-1.0.1/uklr/tests/testthat/test-build-sparql.R | 19 ++++-- uklr-1.0.1/uklr/tests/testthat/test-empty-return.R |only 25 files changed, 329 insertions(+), 173 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch.duncan@gmail.com>, and others (see README)
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 0.100.50 dated 2020-02-21 and 0.100.54 dated 2020-04-14
DESCRIPTION | 10 ++-- MD5 | 53 ++++++++++++------------- R/bgplot3d.R | 12 +++-- R/convertScene.R | 9 ++-- R/getscene.R | 23 +++++++--- R/r3d.rgl.R | 16 ++++++- R/rglcontroller.R | 5 +- R/rglwidget.R | 7 +-- R/setUserShaders.R | 3 - R/subscenes.R | 21 ++++----- R/withPrivateSeed.R |only README | 1 inst/NEWS | 22 ++++++++++ inst/doc/WebGL.html | 65 ++++++++++++++---------------- inst/doc/legacyWebGL.html | 89 ++++++++++++++++++++---------------------- inst/doc/rgl.html | 33 +++++++-------- man/bgplot3d.Rd | 5 +- man/mfrow3d.Rd | 7 +++ man/rglwidget.Rd | 6 +- man/scene3d.Rd | 13 +++++- man/sceneChange.Rd | 8 ++- man/setUserShaders.Rd | 6 ++ man/writeOBJ.Rd | 18 ++++---- src/PrimitiveSet.cpp | 97 +++++++++++++++++++--------------------------- src/PrimitiveSet.h | 2 src/render.cpp | 11 +++-- src/render.h | 6 +- vignettes/setup.R | 6 +- 28 files changed, 310 insertions(+), 244 deletions(-)
Title: 'sf'-Compatible Interface to 'Google Maps' APIs
Description: Interface to the 'Google Maps' APIs: (1) routing directions based on the 'Directions' API, returned as 'sf' objects, either as single feature per alternative route, or a single feature per segment per alternative route; (2) travel distance or time matrices based on the 'Distance Matrix' API; (3) geocoded locations based on the 'Geocode' API, returned as 'sf' objects, either points or bounds; (4) map images using the 'Maps Static' API, returned as 'stars' objects.
Author: Michael Dorman [aut, cre],
Tom Buckley [ctb],
Alex Dannenberg [ctb],
Mihir Bhaskar [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between mapsapi versions 0.4.2 dated 2019-09-07 and 0.4.5 dated 2020-04-14
mapsapi-0.4.2/mapsapi/data/response_directions_driving.RData |only mapsapi-0.4.2/mapsapi/data/response_directions_transit.RData |only mapsapi-0.4.2/mapsapi/data/response_geocode.RData |only mapsapi-0.4.2/mapsapi/data/response_matrix.RData |only mapsapi-0.4.5/mapsapi/DESCRIPTION | 16 mapsapi-0.4.5/mapsapi/LICENSE | 2 mapsapi-0.4.5/mapsapi/MD5 | 63 mapsapi-0.4.5/mapsapi/NAMESPACE | 3 mapsapi-0.4.5/mapsapi/NEWS.md | 9 mapsapi-0.4.5/mapsapi/R/check_inputs.R | 24 mapsapi-0.4.5/mapsapi/R/data.R | 20 mapsapi-0.4.5/mapsapi/R/mp_directions.R | 4 mapsapi-0.4.5/mapsapi/R/mp_geocode.R | 4 mapsapi-0.4.5/mapsapi/R/mp_get_matrix.R | 2 mapsapi-0.4.5/mapsapi/R/mp_get_routes.R | 2 mapsapi-0.4.5/mapsapi/R/mp_map.R |only mapsapi-0.4.5/mapsapi/R/mp_matrix.R | 4 mapsapi-0.4.5/mapsapi/build/vignette.rds |binary mapsapi-0.4.5/mapsapi/data/response_directions_driving.rda |only mapsapi-0.4.5/mapsapi/data/response_directions_transit.rda |only mapsapi-0.4.5/mapsapi/data/response_geocode.rda |only mapsapi-0.4.5/mapsapi/data/response_map.rda |only mapsapi-0.4.5/mapsapi/data/response_matrix.rda |only mapsapi-0.4.5/mapsapi/inst/doc/intro.R | 81 mapsapi-0.4.5/mapsapi/inst/doc/intro.Rmd | 121 mapsapi-0.4.5/mapsapi/inst/doc/intro.html | 2123 ++++++++--- mapsapi-0.4.5/mapsapi/man/mp_directions.Rd | 17 mapsapi-0.4.5/mapsapi/man/mp_geocode.Rd | 5 mapsapi-0.4.5/mapsapi/man/mp_get_matrix.Rd | 2 mapsapi-0.4.5/mapsapi/man/mp_get_routes.Rd | 2 mapsapi-0.4.5/mapsapi/man/mp_map.Rd |only mapsapi-0.4.5/mapsapi/man/mp_matrix.Rd | 16 mapsapi-0.4.5/mapsapi/man/plot.mapsapi_map.Rd |only mapsapi-0.4.5/mapsapi/man/response_directions_driving.Rd | 4 mapsapi-0.4.5/mapsapi/man/response_directions_transit.Rd | 4 mapsapi-0.4.5/mapsapi/man/response_geocode.Rd | 6 mapsapi-0.4.5/mapsapi/man/response_map.Rd |only mapsapi-0.4.5/mapsapi/man/response_matrix.Rd | 4 mapsapi-0.4.5/mapsapi/vignettes/intro.Rmd | 121 39 files changed, 2105 insertions(+), 554 deletions(-)
Title: Species Identification using DNA Barcodes
Description: To perform species identification using DNA barcodes.
Author: Ai-bing ZHANG [aut, cre],
Meng-di HAO [aut],
Cai-qing YANG [aut],
Zhi-yong SHI [aut]
Maintainer: Ai-bing ZHANG <Zhangab2008@mail.cnu.edu.cn>
Diff between BarcodingR versions 1.0-2 dated 2016-10-18 and 1.0-3 dated 2020-04-14
DESCRIPTION | 12 MD5 | 70 ++- R/FMFtheta12.R | 2 R/barcodes.eval.R | 3 R/barcoding.gap.R | 176 ++++----- R/barcoding.spe.identify.R | 796 ++++++++++++++++++++++------------------- R/barcoding.spe.identify2.R | 21 - R/bbsik.R | 50 ++ R/consensus.identify.R | 2 R/optimize.kmer.R | 2 R/save.ids.R | 13 R/summarize.ref.R | 137 +++---- inst |only man/DNAbin2kmerFreqMatrix.Rd | 7 man/FMF.Rd | 7 man/FMFtheta12.Rd | 7 man/NAMES.Rd | 7 man/TDR2.Rd | 7 man/barcodes.eval.Rd | 7 man/barcoding.gap.Rd | 17 man/barcoding.spe.identify.Rd | 32 - man/barcoding.spe.identify2.Rd | 15 man/bbsik.Rd | 13 man/char2NumVector.Rd | 7 man/compare2delimitations.Rd | 7 man/consensus.identify.Rd | 1 man/digitize.DNA.Rd | 7 man/optimize.kmer.Rd | 7 man/sample.ref.Rd | 7 man/save.ids.Rd | 9 man/summarize.ref.Rd | 14 31 files changed, 792 insertions(+), 670 deletions(-)
Title: Estimate Size at Sexual Maturity
Description: Estimate morphometric and gonadal size at sexual maturity for organisms, usually fish and invertebrates. It includes methods for classification based on relative growth (using principal components analysis, hierarchical clustering, discriminant analysis), logistic regression (Frequentist or Bayes), parameters estimation and some basic plots.
Author: Josymar Torrejon-Magallanes [cre, aut]
Maintainer: Josymar Torrejon-Magallanes <ejosymart@gmail.com>
Diff between sizeMat versions 1.1.0 dated 2019-07-31 and 1.1.1 dated 2020-04-14
DESCRIPTION | 12 ++++---- MD5 | 46 +++++++++++++++---------------- NEWS.md | 13 ++++++-- R/data.R | 14 ++++----- R/gonadMat-main.R | 17 ++++++----- R/morphMat-main.R | 39 ++++++++++++++------------ build/vignette.rds |binary data/crabdata.RData |binary data/matFish.RData |binary inst/doc/sizeMat.R | 34 +++++++++++------------ inst/doc/sizeMat.Rmd | 34 +++++++++++------------ inst/doc/sizeMat.html | 71 +++++++++++++++++++++++-------------------------- man/Crab-data.Rd | 14 +++++---- man/Fish-maturity.Rd | 10 ++++-- man/classify_mature.Rd | 13 ++++++-- man/gonad_mature.Rd | 20 ++++++++----- man/morph_mature.Rd | 6 ++-- man/plot.classify.Rd | 18 +++++++++--- man/plot.gonadMat.Rd | 20 ++++++++++--- man/plot.morphMat.Rd | 22 +++++++++++---- man/print.classify.Rd | 4 +- man/print.morphMat.Rd | 2 - man/sizeMat-package.Rd | 10 +++--- vignettes/sizeMat.Rmd | 34 +++++++++++------------ 24 files changed, 253 insertions(+), 200 deletions(-)
Title: Download Data from the Webstat API
Description: Access the Webstat API, download data and metadata from more than 35000 time series
from the Banque de France statistics web portal. Access requires a free client ID easily available
from the API portal <https://developer.webstat.banque-france.fr/>.
Author: Vincent Guegan [aut],
Etienne Kintzler [aut],
Jules Lecocq [aut, cre]
Maintainer: Jules Lecocq <jules.lecocq@banque-france.fr>
Diff between rwebstat versions 1.0.2 dated 2019-05-24 and 1.1.0 dated 2020-04-14
DESCRIPTION | 22 +- MD5 | 38 ++- NAMESPACE | 4 R/config_proxy_bdf.R | 64 +++--- R/internal_fctions.R | 490 ++++++++++++++++++++++++++++----------------------- R/metadata.R | 36 +-- R/w_data.R | 205 +++++++++++---------- R/w_dataset_list.R | 150 ++++++--------- R/w_search.R |only R/w_series_list.R | 147 ++++++--------- R/w_structure.R |only README.md | 8 build |only inst |only man/w_data.Rd | 11 - man/w_datasets.Rd | 5 man/w_meta.Rd | 2 man/w_search.Rd |only man/w_series_list.Rd | 5 man/w_structure.Rd |only vignettes |only 21 files changed, 622 insertions(+), 565 deletions(-)
Title: Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Description: An interface between R and the OSRM API. OSRM is a routing
service based on OpenStreetMap data. See <http://project-osrm.org/> for more
information. This package allows to compute distances (travel time and
kilometric distance) between points and travel time matrices.
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>),
Robin Cura [ctb],
Matthieu Viry [ctb]
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between osrm versions 3.3.2 dated 2019-09-30 and 3.3.3 dated 2020-04-14
DESCRIPTION | 13 ++-- MD5 | 25 ++++----- NAMESPACE | 1 NEWS | 11 ++++ R/osrmIsochrone.R | 136 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/utils.R | 4 + README.md | 14 ++++- inst/test.r | 5 - man/osrm.Rd | 1 man/osrmIsochrone.Rd | 13 +++- man/osrmIsometric.Rd |only man/osrmRoute.Rd | 11 +++- man/osrmTable.Rd | 10 +++ man/osrmTrip.Rd | 3 - 14 files changed, 211 insertions(+), 36 deletions(-)
Title: Create 'Java' Objects and Execute 'Java' Methods
Description: Makes it possible to create 'Java' objects and to execute 'Java' methods from the 'R' environment.
The 'Java' Virtual Machine is handled by a gateway server. Commands are sent to the server
through a socket connection from the 'R' environment. Calls to 'Java' methods allow for
vectors so that a particular method is iteratively run on each element of the vector. A
score algorithm also makes the calls to 'Java' methods less restrictive. The gateway server
relies on the runnable 'Java' library 'j4r.jar'. This library is licensed under the LGPL-3. Its
sources are included in this package.
Author: Mathieu Fortin [aut, cre, cph]
Maintainer: Mathieu Fortin <mathieu.fortin.re@gmail.com>
Diff between J4R versions 1.0.6 dated 2020-04-07 and 1.0.7 dated 2020-04-14
DESCRIPTION | 10 - MD5 | 38 +++--- NAMESPACE | 2 R/j4rConfig.R |only R/j4rFunctions.R | 155 +++++++++---------------- inst/java/j4r.jar |binary inst/java/j4r_x86.jar |only java/j4r/lang/J4RSystem.java | 10 + java/j4r/lang/codetranslator/REnvironment.java | 8 + java/j4r/multiprocess/JavaProcess.java | 3 man/bufferLength.Rd | 2 man/cacheEnv.Rd | 2 man/connectToJava.Rd | 3 man/getJavaArchitecture.Rd |only man/getJavaVersion.Rd | 14 +- man/getMemorySettings.Rd | 2 man/maxVectorLength.Rd | 2 man/setJavaPath.Rd |only tests/testthat/testDynamicClasspath.R | 11 + tests/testthat/testJavaConnection.R | 46 +++++++ tests/testthat/testPerformances.R | 78 +++++++----- tests/testthat/testSimple.R | 26 +--- 22 files changed, 227 insertions(+), 185 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre]
Maintainer: Laurent Berge <laurent.berge@uni.lu>
Diff between fixest versions 0.4.0 dated 2020-03-29 and 0.4.1 dated 2020-04-14
DESCRIPTION | 6 - MD5 | 77 ++++++++------- R/ESTIMATION_FUNS.R | 185 +++++++++++++++++++++++++++++--------- R/MiscFuns.R | 159 ++++++++++++++++---------------- R/coefplot.R | 8 - R/fixest_env.R | 73 ++++++++------ README.md |only inst/NEWS.Rd | 25 +++++ inst/doc/fixest_walkthrough.R | 34 +++--- inst/doc/fixest_walkthrough.Rmd | 40 ++++---- inst/doc/fixest_walkthrough.html | 79 +++++++--------- man/coef.fixest.Rd | 6 - man/coefplot.Rd | 29 ++--- man/collinearity.Rd | 35 +++---- man/confint.fixest.Rd | 2 man/etable.Rd | 4 man/feNmlm.Rd | 35 +++---- man/feglm.Rd | 56 +++++++++-- man/femlm.Rd | 66 ++++++------- man/feols.Rd | 52 ++++++++-- man/fitted.fixest.Rd | 2 man/fixef.fixest.Rd | 6 - man/formula.fixest.Rd | 9 + man/model.matrix.fixest.Rd | 4 man/nobs.fixest.Rd | 2 man/obs2remove.Rd | 10 +- man/plot.fixest.fixef.Rd | 4 man/print.fixest.Rd | 2 man/resid.fixest.Rd | 2 man/setFixest_coefplot.Rd | 18 +-- man/summary.fixest.Rd | 4 man/summary.fixest.fixef.Rd | 10 +- man/summary.fixest.obs2remove.Rd | 2 man/terms.fixest.Rd | 2 man/update.fixest.Rd | 6 - man/vcov.fixest.Rd | 2 vignettes/benchmark_difficult.png |only vignettes/benchmark_gaussian.png |only vignettes/benchmark_logit.png |only vignettes/benchmark_negbin.png |only vignettes/benchmark_poisson.png |only vignettes/equation.PNG |only vignettes/fixest_walkthrough.Rmd | 40 ++++---- 43 files changed, 652 insertions(+), 444 deletions(-)
Title: Tools to create, modify and manage 'CWB' Corpora
Description: The 'Corpus Workbench' ('CWB', <http://cwb.sourceforge.net/>) offers a classic and mature
approach for working with large, linguistically and structurally annotated corpora. The 'CWB'
is memory efficient and its design makes running queries fast (Evert and Hardie 2011,
<http://www.stefan-evert.de/PUB/EvertHardie2011.pdf>). The 'cwbtools' package offers
pure R tools to create indexed corpus files as well as high-level wrappers for the original C
implementation of CWB as exposed by the 'RcppCWB' package
<https://CRAN.R-project.org/package=RcppCWB>. Additional functionality to add and
modify annotations of corpora from within R makes working with CWB indexed corpora
much more flexible and convenient. The 'cwbtools' package in combination with the R packages
'RcppCWB' (<https://CRAN.R-project.org/package=RcppCWB>) and 'polmineR'
(<https://CRAN.R-project.org/package=polmineR>) offers a lightweight infrastructure
to support the combination of quantitative and qualitative approaches for working
with textual data.
Author: Andreas Blaette [aut, cre],
Christoph Leonhardt [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between cwbtools versions 0.1.2 dated 2019-12-17 and 0.2.0 dated 2020-04-14
cwbtools-0.1.2/cwbtools/R/utils.R |only cwbtools-0.2.0/cwbtools/DESCRIPTION | 21 - cwbtools-0.2.0/cwbtools/MD5 | 50 +- cwbtools-0.2.0/cwbtools/NAMESPACE | 15 cwbtools-0.2.0/cwbtools/NEWS.md | 38 ++ cwbtools-0.2.0/cwbtools/R/CorpusData.R | 110 ++---- cwbtools-0.2.0/cwbtools/R/corpus.R | 382 ++++++++++++++-------- cwbtools-0.2.0/cwbtools/R/cwbtools.R | 18 - cwbtools-0.2.0/cwbtools/R/directories.R |only cwbtools-0.2.0/cwbtools/R/encoding.R |only cwbtools-0.2.0/cwbtools/R/p_attribute.R | 1 cwbtools-0.2.0/cwbtools/R/zenodo.R |only cwbtools-0.2.0/cwbtools/build/vignette.rds |binary cwbtools-0.2.0/cwbtools/inst/CITATION | 6 cwbtools-0.2.0/cwbtools/inst/doc/europarl.html | 15 cwbtools-0.2.0/cwbtools/inst/doc/sentences.R |only cwbtools-0.2.0/cwbtools/inst/doc/sentences.Rmd |only cwbtools-0.2.0/cwbtools/inst/doc/sentences.html |only cwbtools-0.2.0/cwbtools/inst/doc/vignette.html | 21 - cwbtools-0.2.0/cwbtools/man/CorpusData.Rd | 269 +++++++++++---- cwbtools-0.2.0/cwbtools/man/corpus_utils.Rd | 160 ++++++--- cwbtools-0.2.0/cwbtools/man/cwbtools-package.Rd | 18 - cwbtools-0.2.0/cwbtools/man/directories.Rd |only cwbtools-0.2.0/cwbtools/man/get_encoding.Rd | 2 cwbtools-0.2.0/cwbtools/man/p_attribute_encode.Rd | 22 - cwbtools-0.2.0/cwbtools/man/pkg_utils.Rd | 30 + cwbtools-0.2.0/cwbtools/man/registry_file.Rd | 20 - cwbtools-0.2.0/cwbtools/man/s_attribute.Rd | 23 + cwbtools-0.2.0/cwbtools/tests |only cwbtools-0.2.0/cwbtools/vignettes/sentences.Rmd |only 30 files changed, 836 insertions(+), 385 deletions(-)
Title: Bayesian Methods and Graphical Model Structures for Statistical
Modeling
Description: A class of frequently used Bayesian parametric and nonparametric model structures, as well as a set of tools for common analytical tasks. Structures include Gaussian and Normal-Inverse-Wishart conjugate structure, Gaussian and Normal-Inverse-Gamma conjugate structure, Categorical and Dirichlet conjugate structure, Dirichlet Process on positive integers, Dirichlet Process in general, Hierarchical Dirichlet Process ... Tasks include updating posteriors, calculating marginal likelihood, calculating posterior predictive densities, sampling from posterior predictive distributions, calculating "Maximum A Posteriori" (MAP) estimates ... See Murphy (2012, <doi:10.1080/09332480.2014.914768>), Koller and Friedman (2009, <doi:10.1017/s0269888910000275>) and Andrieu, de Freitas, Doucet and Jordan (2003, <doi:10.1023/A:1020281327116>) for more information. See <https://chenhaotian.github.io/Bayesian-Bricks/> to get started.
Author: Haotian Chen [aut, cre] (<https://orcid.org/0000-0001-9751-2093>)
Maintainer: Haotian Chen <chenhaotian.jtt@gmail.com>
Diff between bbricks versions 0.1.1 dated 2020-03-25 and 0.1.2 dated 2020-04-14
bbricks-0.1.1/bbricks/man/linearGaussian.Rd |only bbricks-0.1.2/bbricks/DESCRIPTION | 11 bbricks-0.1.2/bbricks/MD5 | 291 - bbricks-0.1.2/bbricks/NAMESPACE | 99 bbricks-0.1.2/bbricks/NEWS.md | 28 bbricks-0.1.2/bbricks/R/Bayesian_Bricks.r | 1100 ++++ bbricks-0.1.2/bbricks/R/Categorical_Inference.r | 259 - bbricks-0.1.2/bbricks/R/Dirichlet_Process.r | 915 ++- bbricks-0.1.2/bbricks/R/Gamma_Inference.r |only bbricks-0.1.2/bbricks/R/Gaussian_Inference.r | 2357 ++++++++-- bbricks-0.1.2/bbricks/R/MCMC.r | 2 bbricks-0.1.2/bbricks/R/testData.r | 22 bbricks-0.1.2/bbricks/data/hlrData.RData |only bbricks-0.1.2/bbricks/inst/doc/bbricks-getting-started.R | 134 bbricks-0.1.2/bbricks/inst/doc/bbricks-getting-started.Rmd | 271 - bbricks-0.1.2/bbricks/inst/doc/bbricks-getting-started.html | 254 - bbricks-0.1.2/bbricks/man/BasicBayesian.Rd | 12 bbricks-0.1.2/bbricks/man/CatDP.Rd | 12 bbricks-0.1.2/bbricks/man/CatDirichlet.Rd | 13 bbricks-0.1.2/bbricks/man/CatHDP.Rd | 14 bbricks-0.1.2/bbricks/man/CatHDP2.Rd | 18 bbricks-0.1.2/bbricks/man/DP.Rd | 15 bbricks-0.1.2/bbricks/man/GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/GaussianNIG.Rd | 17 bbricks-0.1.2/bbricks/man/GaussianNIW.Rd | 12 bbricks-0.1.2/bbricks/man/HDP.Rd | 18 bbricks-0.1.2/bbricks/man/HDP2.Rd | 20 bbricks-0.1.2/bbricks/man/LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/MAP.CatDP.Rd | 10 bbricks-0.1.2/bbricks/man/MAP.CatDirichlet.Rd | 9 bbricks-0.1.2/bbricks/man/MAP.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/MAP.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/MAP.GaussianNIG.Rd | 18 bbricks-0.1.2/bbricks/man/MAP.GaussianNIW.Rd | 17 bbricks-0.1.2/bbricks/man/MAP.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/MAP.Rd | 61 bbricks-0.1.2/bbricks/man/MPE.CatDP.Rd | 10 bbricks-0.1.2/bbricks/man/MPE.CatDirichlet.Rd | 9 bbricks-0.1.2/bbricks/man/MPE.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/MPE.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/MPE.GaussianNIG.Rd | 15 bbricks-0.1.2/bbricks/man/MPE.GaussianNIW.Rd | 17 bbricks-0.1.2/bbricks/man/MPE.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/MPE.Rd | 63 bbricks-0.1.2/bbricks/man/dCategorical.Rd | 3 bbricks-0.1.2/bbricks/man/dDir.Rd | 4 bbricks-0.1.2/bbricks/man/dGaussian.Rd | 4 bbricks-0.1.2/bbricks/man/dInvGamma.Rd |only bbricks-0.1.2/bbricks/man/dInvWishart.Rd |only bbricks-0.1.2/bbricks/man/dNIW.Rd |only bbricks-0.1.2/bbricks/man/dPosterior.CatDirichlet.Rd |only bbricks-0.1.2/bbricks/man/dPosterior.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/dPosterior.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/dPosterior.GaussianNIG.Rd |only bbricks-0.1.2/bbricks/man/dPosterior.GaussianNIW.Rd |only bbricks-0.1.2/bbricks/man/dPosterior.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/dPosterior.Rd |only bbricks-0.1.2/bbricks/man/dPosteriorPredictive.CatDP.Rd | 12 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.CatDirichlet.Rd | 11 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.CatHDP.Rd | 16 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.CatHDP2.Rd | 20 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.DP.Rd | 16 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/dPosteriorPredictive.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/dPosteriorPredictive.GaussianNIG.Rd | 15 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.GaussianNIW.Rd | 16 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.HDP.Rd | 20 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.HDP2.Rd | 24 bbricks-0.1.2/bbricks/man/dPosteriorPredictive.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/dPosteriorPredictive.Rd | 61 bbricks-0.1.2/bbricks/man/dT.Rd | 6 bbricks-0.1.2/bbricks/man/dWishart.Rd |only bbricks-0.1.2/bbricks/man/dot-det.Rd |only bbricks-0.1.2/bbricks/man/dot-lmvgamma.Rd |only bbricks-0.1.2/bbricks/man/grapes-plus-grapes.Rd | 4 bbricks-0.1.2/bbricks/man/hlrData.Rd |only bbricks-0.1.2/bbricks/man/inferenceJointGaussian.Rd | 9 bbricks-0.1.2/bbricks/man/marginalLikelihood.CatDP.Rd | 12 bbricks-0.1.2/bbricks/man/marginalLikelihood.CatDirichlet.Rd | 11 bbricks-0.1.2/bbricks/man/marginalLikelihood.DP.Rd | 4 bbricks-0.1.2/bbricks/man/marginalLikelihood.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/marginalLikelihood.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/marginalLikelihood.GaussianNIG.Rd | 15 bbricks-0.1.2/bbricks/man/marginalLikelihood.GaussianNIW.Rd | 14 bbricks-0.1.2/bbricks/man/marginalLikelihood.HDP.Rd | 4 bbricks-0.1.2/bbricks/man/marginalLikelihood.HDP2.Rd | 4 bbricks-0.1.2/bbricks/man/marginalLikelihood.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/marginalLikelihood.Rd | 61 bbricks-0.1.2/bbricks/man/marginalLikelihood_bySufficientStatistics.CatDP.Rd | 14 bbricks-0.1.2/bbricks/man/marginalLikelihood_bySufficientStatistics.CatDirichlet.Rd | 13 bbricks-0.1.2/bbricks/man/marginalLikelihood_bySufficientStatistics.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/marginalLikelihood_bySufficientStatistics.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/marginalLikelihood_bySufficientStatistics.GaussianNIG.Rd | 17 bbricks-0.1.2/bbricks/man/marginalLikelihood_bySufficientStatistics.GaussianNIW.Rd | 14 bbricks-0.1.2/bbricks/man/marginalLikelihood_bySufficientStatistics.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/marginalLikelihood_bySufficientStatistics.Rd | 63 bbricks-0.1.2/bbricks/man/pdsDeterminant.Rd |only bbricks-0.1.2/bbricks/man/pdsInverse.Rd | 4 bbricks-0.1.2/bbricks/man/posterior.CatDP.Rd | 8 bbricks-0.1.2/bbricks/man/posterior.CatDirichlet.Rd | 7 bbricks-0.1.2/bbricks/man/posterior.CatHDP.Rd | 12 bbricks-0.1.2/bbricks/man/posterior.CatHDP2.Rd | 16 bbricks-0.1.2/bbricks/man/posterior.DP.Rd | 12 bbricks-0.1.2/bbricks/man/posterior.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/posterior.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/posterior.GaussianNIG.Rd | 17 bbricks-0.1.2/bbricks/man/posterior.GaussianNIW.Rd | 14 bbricks-0.1.2/bbricks/man/posterior.HDP.Rd | 16 bbricks-0.1.2/bbricks/man/posterior.HDP2.Rd | 20 bbricks-0.1.2/bbricks/man/posterior.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/posterior.Rd | 96 bbricks-0.1.2/bbricks/man/posteriorDiscard.CatDP.Rd | 8 bbricks-0.1.2/bbricks/man/posteriorDiscard.CatDirichlet.Rd | 9 bbricks-0.1.2/bbricks/man/posteriorDiscard.CatHDP.Rd | 12 bbricks-0.1.2/bbricks/man/posteriorDiscard.CatHDP2.Rd | 16 bbricks-0.1.2/bbricks/man/posteriorDiscard.DP.Rd | 12 bbricks-0.1.2/bbricks/man/posteriorDiscard.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/posteriorDiscard.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/posteriorDiscard.GaussianNIG.Rd | 13 bbricks-0.1.2/bbricks/man/posteriorDiscard.GaussianNIW.Rd | 10 bbricks-0.1.2/bbricks/man/posteriorDiscard.HDP.Rd | 16 bbricks-0.1.2/bbricks/man/posteriorDiscard.HDP2.Rd | 20 bbricks-0.1.2/bbricks/man/posteriorDiscard.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/posteriorDiscard.Rd | 95 bbricks-0.1.2/bbricks/man/print.BasicBayesian.Rd | 4 bbricks-0.1.2/bbricks/man/rCategorical.Rd | 6 bbricks-0.1.2/bbricks/man/rDir.Rd | 4 bbricks-0.1.2/bbricks/man/rGaussian.Rd | 4 bbricks-0.1.2/bbricks/man/rInvGamma.Rd |only bbricks-0.1.2/bbricks/man/rInvWishart.Rd |only bbricks-0.1.2/bbricks/man/rNIW.Rd |only bbricks-0.1.2/bbricks/man/rPosterior.CatDirichlet.Rd |only bbricks-0.1.2/bbricks/man/rPosterior.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/rPosterior.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/rPosterior.GaussianNIG.Rd |only bbricks-0.1.2/bbricks/man/rPosterior.GaussianNIW.Rd |only bbricks-0.1.2/bbricks/man/rPosterior.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/rPosterior.Rd |only bbricks-0.1.2/bbricks/man/rPosteriorPredictive.CatDP.Rd | 14 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.CatDirichlet.Rd | 13 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.CatHDP.Rd | 16 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.CatHDP2.Rd | 20 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.DP.Rd | 16 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/rPosteriorPredictive.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/rPosteriorPredictive.GaussianNIG.Rd | 17 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.GaussianNIW.Rd | 14 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.HDP.Rd | 20 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.HDP2.Rd | 24 bbricks-0.1.2/bbricks/man/rPosteriorPredictive.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/rPosteriorPredictive.Rd | 63 bbricks-0.1.2/bbricks/man/rT.Rd | 6 bbricks-0.1.2/bbricks/man/rWishart.Rd |only bbricks-0.1.2/bbricks/man/sufficientStatistics.CatDP.Rd | 14 bbricks-0.1.2/bbricks/man/sufficientStatistics.CatDirichlet.Rd | 15 bbricks-0.1.2/bbricks/man/sufficientStatistics.DP.Rd | 13 bbricks-0.1.2/bbricks/man/sufficientStatistics.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/sufficientStatistics.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/sufficientStatistics.GaussianNIG.Rd | 23 bbricks-0.1.2/bbricks/man/sufficientStatistics.GaussianNIW.Rd | 16 bbricks-0.1.2/bbricks/man/sufficientStatistics.HDP.Rd | 17 bbricks-0.1.2/bbricks/man/sufficientStatistics.HDP2.Rd | 36 bbricks-0.1.2/bbricks/man/sufficientStatistics.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/sufficientStatistics.Rd | 127 bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.CatDP.Rd | 14 bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.CatDirichlet.Rd | 13 bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.DP.Rd | 23 bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.GaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.GaussianInvWishart.Rd |only bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.GaussianNIG.Rd | 25 bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.GaussianNIW.Rd | 18 bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.HDP.Rd | 33 bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.HDP2.Rd | 37 bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.LinearGaussianGaussian.Rd |only bbricks-0.1.2/bbricks/man/sufficientStatistics_Weighted.Rd | 127 bbricks-0.1.2/bbricks/vignettes/bbricks-getting-started.Rmd | 271 - bbricks-0.1.2/bbricks/vignettes/notes_pictures/hierarchicalBayesianLinearRegression.png |only 178 files changed, 6134 insertions(+), 1972 deletions(-)
Title: Design Shaded Contour Lines (or Tanaka) Maps
Description: The Tanaka method enhances the representation of topography on a map using shaded contour lines. In this simplified implementation of the method, north-west white contours represent illuminated topography and south-east black contours represent shaded topography. See Tanaka (1950) <doi:10.2307/211219>.
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between tanaka versions 0.1.2 dated 2020-03-23 and 0.1.3 dated 2020-04-14
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 +- NEWS.md | 8 ++++++++ R/tanaka_contour.R | 5 +++-- 5 files changed, 21 insertions(+), 12 deletions(-)
Title: Create, Build and Maintain Packages
Description: Helper functions for package creation, building and
maintenance. Designed to work with a build system such as 'GNU make' or
package 'fakemake' to help you to conditionally work through the stages of
package development (such as spell checking, linting, testing, before
building and checking a package).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between packager versions 1.1.0 dated 2020-03-13 and 1.2.0 dated 2020-04-14
packager-1.1.0/packager/inst/doc/An_Introduction_to_packager.Rmd |only packager-1.1.0/packager/vignettes/An_Introduction_to_packager.Rmd |only packager-1.2.0/packager/DESCRIPTION | 14 packager-1.2.0/packager/MD5 | 33 packager-1.2.0/packager/NAMESPACE | 1 packager-1.2.0/packager/NEWS.md | 8 packager-1.2.0/packager/R/convert_vignette.R |only packager-1.2.0/packager/R/devtools_modified.R | 9 packager-1.2.0/packager/R/extract_vignette_code.R |only packager-1.2.0/packager/R/main.R | 4 packager-1.2.0/packager/R/makelist.R | 10 packager-1.2.0/packager/R/upload_cran.R | 2 packager-1.2.0/packager/build/vignette.rds |binary packager-1.2.0/packager/inst/doc/An_Introduction_to_packager.R | 29 packager-1.2.0/packager/inst/doc/An_Introduction_to_packager.Rasciidoc |only packager-1.2.0/packager/inst/doc/An_Introduction_to_packager.html | 2090 +++++++--- packager-1.2.0/packager/inst/runit_tests/test_main.R | 25 packager-1.2.0/packager/inst/templates/nomakefile | 2 packager-1.2.0/packager/man/extract_vignette_codes.Rd |only packager-1.2.0/packager/man/set_package_info.Rd | 3 packager-1.2.0/packager/vignettes/An_Introduction_to_packager.Rasciidoc |only 21 files changed, 1676 insertions(+), 554 deletions(-)
Title: Metadata Processing for the German Modification of the ICD-10
Coding System
Description: Provides convenient access to the German modification of the International Classification of Diagnoses, 10th revision (ICD-10-GM). It provides functionality to aid in the identification, specification and historisation of ICD-10 codes. Its intended use is the analysis of routinely collected data in the context of epidemiology, medical research and health services research. The underlying metadata are released by the German Institute for Medical Documentation and Information <https://www.dimdi.de>, and are redistributed in accordance with their license.
Author: Ewan Donnachie [aut, cre] (<https://orcid.org/0000-0002-0668-0049>)
Maintainer: Ewan Donnachie <ewan@donnachie.net>
Diff between ICD10gm versions 1.0.4 dated 2019-08-21 and 1.1 dated 2020-04-14
DESCRIPTION | 12 +- MD5 | 58 +++++++------ NAMESPACE | 3 NEWS.md | 9 ++ R/data.R | 53 +++++++++--- R/icd_expand.R | 1 R/icd_history.R | 3 R/icd_parse.R | 4 R/icd_showchanges.R | 6 + README.md | 2 build/vignette.rds |binary data/icd_meta_blocks.rda |binary data/icd_meta_chapters.rda |binary data/icd_meta_codes.rda |binary data/icd_meta_transition.rda |binary inst/doc/icd10gm_intro.R | 22 ++--- inst/doc/icd10gm_intro.html | 181 +++++++++++++++++++++---------------------- inst/logo |only man/figures |only man/get_icd_history.Rd | 8 - man/get_icd_labels.Rd | 14 ++- man/icd_expand.Rd | 13 ++- man/icd_history.Rd | 1 man/icd_meta_blocks.Rd | 23 +++-- man/icd_meta_chapters.Rd | 11 ++ man/icd_meta_codes.Rd | 22 ++++- man/icd_meta_transition.Rd | 14 ++- man/icd_parse.Rd | 3 man/icd_showchanges.Rd | 8 - man/icd_showchanges_icd3.Rd | 6 - man/is_icd_code.Rd | 3 31 files changed, 293 insertions(+), 187 deletions(-)
Title: Implement Download Buttons in 'rmarkdown'
Description: Implement download buttons in HTML output from 'rmarkdown' without the need for 'runtime:shiny'.
Author: Felipe Mattioni Maturana [aut, cre]
(<https://orcid.org/0000-0002-4221-6104>)
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>
Diff between downloadthis versions 0.1.2 dated 2020-03-30 and 0.1.3 dated 2020-04-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/download.R | 15 +++++++-------- inst/doc/button_types.html | 12 +++++++++--- inst/doc/customization.html | 3 +++ inst/doc/downloadthis.html | 7 +++++-- 7 files changed, 39 insertions(+), 22 deletions(-)
Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by
the help of model performance, variable importance, global surrogate
models, ICE profiles, partial dependence (Friedman J. H. (2001)
<doi:10.1214/aos/1013203451>), accumulated local effects (Apley D. W.
(2016) <arXiv:1612.08468>), further effects plots, scatter plots,
interaction strength, and variable contribution breakdown (approximate
SHAP) for single observations (Gosiewska and Biecek (2019)
<arxiv:1903.11420>). All tools are implemented to work with case
weights and allow for stratified analysis. Furthermore, multiple
flashlights can be combined and analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between flashlight versions 0.7.1 dated 2020-03-20 and 0.7.2 dated 2020-04-14
DESCRIPTION | 16 +- MD5 | 64 ++++---- NEWS.md | 22 ++ R/add_shap.R | 4 R/light_breakdown.R | 8 - R/light_global_surrogate.R | 4 R/light_ice.R | 4 R/light_importance.R | 4 R/light_interaction.R | 10 - R/light_profile.R | 6 R/plot_light_ice.R | 14 - R/plot_light_performance.R | 23 ++- R/plot_light_profile.R | 28 ++- inst/doc/flashlight.R | 41 ++--- inst/doc/flashlight.Rmd | 41 ++--- inst/doc/flashlight.html | 241 +++++++++++++++---------------- man/add_shap.Rd | 160 ++++++++++---------- man/all_identical.Rd | 54 +++---- man/auto_cut.Rd | 112 +++++++------- man/light_breakdown.Rd | 236 +++++++++++++++--------------- man/light_effects.Rd | 276 ++++++++++++++++++------------------ man/light_global_surrogate.Rd | 182 +++++++++++------------ man/light_ice.Rd | 248 ++++++++++++++++---------------- man/light_importance.Rd | 226 ++++++++++++++--------------- man/light_interaction.Rd | 234 +++++++++++++++--------------- man/light_performance.Rd | 166 ++++++++++----------- man/light_profile.Rd | 322 +++++++++++++++++++++--------------------- man/light_scatter.Rd | 186 ++++++++++++------------ man/plot.light_ice.Rd | 110 ++++++-------- man/plot.light_performance.Rd | 91 ++++++----- man/plot.light_profile.Rd | 101 ++++++------- vignettes/biblio.bib | 1 vignettes/flashlight.Rmd | 41 ++--- 33 files changed, 1641 insertions(+), 1635 deletions(-)
Title: Analysis of Basketball Data
Description: Collection of tools to work with basketball data. Functions available are related to friendly
web scraping and visualization. Data were obtained from <http://www.euroleague.net/>,
<http://www.eurocupbasketball.com/> and <http://www.acb.com>, following the instructions
of their respectives robots.txt files, when available. Tools for visualization include a population pyramid, 2D plots,
circular plots of players' percentiles, plots of players' monthly/yearly stats,
team heatmaps, team shooting plots, team four factors plots, cross-tables with the results of regular season games
and maps of nationalities. Please see Vinue (2020) <doi:10.1089/big.2018.0124>.
Author: Guillermo Vinue
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>
Diff between BAwiR versions 1.2.2 dated 2020-03-24 and 1.2.3 dated 2020-04-14
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- NEWS | 9 +++++++++ R/do_join_games_bio.R | 6 ++++-- R/get_similar_players.R | 11 +++++------ R/join_players_bio_age_acb.R | 5 +++-- R/join_players_bio_age_euro.R | 5 +++-- inst/doc/BAwiR.html | 6 +++--- man/BAwiR-package.Rd | 4 ++-- man/get_similar_players.Rd | 11 +++++------ 11 files changed, 50 insertions(+), 39 deletions(-)
Title: Modeling Spatially Varying Coefficients
Description: Implements a maximum likelihood estimation (MLE)
method for estimation and prediction in spatially varying coefficient
(SVC) models (Dambon et al. (2020) <arXiv:2001.08089>). Covariance
tapering (Furrer et al. (2006) <doi:10.1198/106186006X132178>) can be
applied such that the method scales to large data.
Author: Jakob A. Dambon [aut, cre] (<https://orcid.org/0000-0001-5855-2017>),
Fabio Sigrist [ctb] (<https://orcid.org/0000-0002-3994-2244>),
Reinhard Furrer [ctb] (<https://orcid.org/0000-0002-6319-2332>)
Maintainer: Jakob A. Dambon <jakob.dambon@math.uzh.ch>
Diff between varycoef versions 0.2.10 dated 2020-02-21 and 0.2.11 dated 2020-04-14
varycoef-0.2.10/varycoef/inst/doc/example.R |only varycoef-0.2.10/varycoef/inst/doc/example.Rmd |only varycoef-0.2.10/varycoef/vignettes/example.Rmd |only varycoef-0.2.11/varycoef/DESCRIPTION | 52 varycoef-0.2.11/varycoef/MD5 | 27 varycoef-0.2.11/varycoef/NAMESPACE | 4 varycoef-0.2.11/varycoef/R/SVC_mle.R | 20 varycoef-0.2.11/varycoef/R/eff_dof.R |only varycoef-0.2.11/varycoef/R/pen_functions.R |only varycoef-0.2.11/varycoef/build/partial.rdb |binary varycoef-0.2.11/varycoef/build/vignette.rds |binary varycoef-0.2.11/varycoef/inst/doc/example.html | 1567 ++++++++----------- varycoef-0.2.11/varycoef/inst/doc/example.html.asis |only varycoef-0.2.11/varycoef/inst/doc/manual.html | 69 varycoef-0.2.11/varycoef/man/Lq.Rd |only varycoef-0.2.11/varycoef/man/SCAD.Rd |only varycoef-0.2.11/varycoef/man/SVC_mle_control.Rd | 3 varycoef-0.2.11/varycoef/man/d.Lq.Rd |only varycoef-0.2.11/varycoef/man/d.SCAD.Rd |only varycoef-0.2.11/varycoef/vignettes/example.html.asis |only 20 files changed, 821 insertions(+), 921 deletions(-)
Title: Spatial Position Models
Description: Computes spatial position models: Stewart potentials, Reilly
catchment areas, Huff catchment areas.
Author: Timothée Giraud [cre, aut],
Hadrien Commenges [aut],
Joël Boulier [ctb]
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between SpatialPosition versions 2.0.0 dated 2019-05-10 and 2.0.1 dated 2020-04-14
DESCRIPTION | 18 MD5 | 46 +- NAMESPACE | 2 NEWS | 8 R/isopoly.R | 8 build/vignette.rds |binary data/hospital.RData |binary inst/doc/SpatialPosition.R | 10 inst/doc/SpatialPosition.Rmd | 6 inst/doc/SpatialPosition.html | 704 +++++++++++++++-------------------- inst/doc/StewartExample.R | 6 inst/doc/StewartExample.html | 830 ++++++++++++++++++------------------------ man/CreateDistMatrix.Rd | 3 man/SpatialPosition.Rd | 1 man/huff.Rd | 17 man/isopoly.Rd | 14 man/mcStewart.Rd | 19 man/plotStewart.Rd | 12 man/quickStewart.Rd | 21 - man/rasterToContourPoly.Rd | 2 man/reilly.Rd | 17 man/smoothy.Rd | 17 man/stewart.Rd | 17 vignettes/SpatialPosition.Rmd | 6 24 files changed, 846 insertions(+), 938 deletions(-)
More information about SpatialPosition at CRAN
Permanent link
Title: Data Mining Classification and Regression Methods
Description: Facilitates the use of data mining algorithms in classification and regression (including time series forecasting) tasks by presenting a short and coherent set of functions. Versions: 1.4.5 / 1.4.4 new automated machine learning (AutoML) and ensembles, via improved fit(), mining() and mparheuristic() functions, and new categorical preprocessing, via improved delevels() function; 1.4.3 new metrics (e.g., macro precision, explained variance), new "lssvm" model and improved mparheuristic() function; 1.4.2 new "NMAE" metric, "xgboost" and "cv.glmnet" models (16 classification and 18 regression models); 1.4.1 new tutorial and more robust version; 1.4 - new classification and regression models, with a total of 14 classification and 15 regression methods, including: Decision Trees, Neural Networks, Support Vector Machines, Random Forests, Bagging and Boosting; 1.3 and 1.3.1 - new classification and regression metrics; 1.2 - new input importance methods via improved Importance() function; 1.0 - first version.
Author: Paulo Cortez [aut, cre]
Maintainer: Paulo Cortez <pcortez@dsi.uminho.pt>
Diff between rminer versions 1.4.4 dated 2020-04-09 and 1.4.5 dated 2020-04-14
DESCRIPTION | 10 ++--- MD5 | 14 +++---- R/metrics.R | 108 ++++++++++++++++++++++++++++++------------------------ R/model.R | 82 ++++++++++++++++++++++------------------- R/plots.R | 1 R/preprocess.R | 6 +-- man/fit.Rd | 10 ++--- man/imputation.Rd | 1 8 files changed, 123 insertions(+), 109 deletions(-)
Title: Create Reports Using R and 'asciidoc'
Description: Inspired by Karl Broman`s reader on using 'knitr'
with 'asciidoc'
(<http://kbroman.org/knitr_knutshell/pages/asciidoc.html>), this is
merely a wrapper to 'knitr' and 'asciidoc'.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between rasciidoc versions 2.1.0 dated 2020-04-08 and 2.1.1 dated 2020-04-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/render.R | 23 +++++++++++++++-------- inst/doc/An_Introduction_to_rasciidoc.html | 28 ++++++++++++++-------------- 5 files changed, 40 insertions(+), 29 deletions(-)
Title: Common Public Health Statistics and their Confidence Intervals
Description: Functions to calculate commonly used public health statistics and
their confidence intervals using methods approved for use in the production
of Public Health England indicators such as those presented via Fingertips
(<http://fingertips.phe.org.uk/>). It provides functions for the generation
of proportions, crude rates, means, directly standardised rates, indirectly
standardised rates, standardised mortality ratios, slope and relative index
of inequality and life expectancy.
Statistical methods are referenced in the following publications.
Breslow NE, Day NE (1987) <doi:10.1002/sim.4780080614>.
Dobson et al (1991) <doi:10.1002/sim.4780100317>.
Armitage P, Berry G (2002) <doi:10.1002/9780470773666>.
Wilson EB. (1927) <doi:10.1080/01621459.1927.10502953>.
Altman DG et al (2000, ISBN: 978-0-727-91375-3).
Chiang CL. (1968, ISBN: 978-0-882-75200-6).
Newell C. (1994, ISBN: 978-0-898-62451-9).
Eayres DP, Williams ES (2004) <doi:10.1136/jech.2003.009654>.
Silcocks PBS et al (2001) <doi:10.1136/jech.55.1.38>.
Low and Low (2004) <doi:10.1093/pubmed/fdh175>.
Author: Anderson Georgina [aut, cre],
Fox Sebastian [ctb],
Francis Matthew [ctb],
Fryers Paul [ctb],
Clegg Emma [ctb]
Maintainer: Anderson Georgina <georgina.anderson@phe.gov.uk>
Diff between PHEindicatormethods versions 1.3.0 dated 2020-03-12 and 1.3.1 dated 2020-04-14
DESCRIPTION | 10 MD5 | 46 - NAMESPACE | 1 NEWS.md | 9 R/LifeExpectancy.R | 50 +- R/PHEindicatormethods.R | 6 R/Proportions.R | 2 R/Quantiles.R | 11 R/Rates.R | 2 R/SII_function.R | 59 +- README.md | 9 inst/doc/DSR-vignette.html | 118 ++-- inst/doc/Introduction_to_PHEindicatormethods.html | 550 ++++++++++------------ inst/doc/WorkedExamples_phe_sii.html | 194 +++---- man/DSR_data.Rd | 36 - man/FindXValues.Rd | 34 - man/LE_data.Rd | 36 - man/PHEindicatormethods.Rd | 20 man/esp2013.Rd | 72 +- man/na.zero.Rd | 26 - man/phe_life_expectancy.Rd | 5 man/prevalence_data.Rd | 36 - tests/testthat/testLifeExpectancy.R | 13 tests/testthat/testQuantiles.R | 18 24 files changed, 705 insertions(+), 658 deletions(-)
More information about PHEindicatormethods at CRAN
Permanent link
Title: Analyzing Data with Cellwise Outliers
Description: Tools for detecting cellwise outliers and robust methods to analyze data which may contain them. Contains the implementation of the algorithms described in Rousseeuw and Van den Bossche (2018) <doi:10.1080/00401706.2017.1340909>, Hubert et al. (2019) <doi:10.1080/00401706.2018.1562989>, Raymaekers and Rousseeuw (2019) <doi:10.1080/00401706.2019.1677270>.
Author: Jakob Raymaekers [aut, cre],
Peter Rousseeuw [aut],
Wannes Van den Bossche [aut],
Mia Hubert [aut]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between cellWise versions 2.1.0 dated 2019-02-25 and 2.1.1 dated 2020-04-14
DESCRIPTION | 10 - MD5 | 34 +-- R/MacroPCA.R | 22 +- build/vignette.rds |binary inst/doc/DDC_examples.R | 50 ++--- inst/doc/DDC_examples.html | 384 +++++++++++++++++++--------------------- inst/doc/MacroPCA_examples.R | 42 ++-- inst/doc/MacroPCA_examples.html | 77 +++----- inst/doc/Wrap_examples.R | 10 - man/DDC.Rd | 5 man/DDCpredict.Rd | 2 man/MacroPCA.Rd | 2 man/MacroPCApredict.Rd | 2 man/cellMap.Rd | 2 man/estLocScale.Rd | 3 man/mortality.Rd | 2 man/wrap.Rd | 3 src/cwcov.cpp |only src/cwcov.h |only 19 files changed, 318 insertions(+), 332 deletions(-)
Title: Partial Autoregression
Description: A time series is said to be partially autoregressive if it can be represented as a sum of a random walk and an autoregressive sequence without unit roots. This package fits partially autoregressive time series, where the autoregressive component is AR(1). This may be of use in modeling certain financial time series.
Author: Matthew Clegg [aut, cre, cph]
Maintainer: Matthew Clegg <matthewcleggphd@gmail.com>
Diff between partialAR versions 1.0.11 dated 2018-03-06 and 1.0.12 dated 2020-04-14
partialAR-1.0.11/partialAR/src/registerDynamicSymbol.c |only partialAR-1.0.12/partialAR/DESCRIPTION | 8 partialAR-1.0.12/partialAR/MD5 | 9 partialAR-1.0.12/partialAR/R/RcppExports.R | 16 - partialAR-1.0.12/partialAR/src/RcppExports.cpp | 170 +++++++---------- partialAR-1.0.12/partialAR/tests/tests.R | 4 6 files changed, 97 insertions(+), 110 deletions(-)
Title: Markov Models for Health Economic Evaluations
Description: An implementation of the modelling and reporting features described
in reference textbook and guidelines (Briggs, Andrew, et al. Decision
Modelling for Health Economic Evaluation. Oxford Univ. Press, 2011;
Siebert, U. et al. State-Transition Modeling. Medical Decision Making
32, 690-700 (2012).): deterministic and probabilistic sensitivity analysis,
heterogeneity analysis, time dependency on state-time and model-time
(semi-Markov and non-homogeneous Markov models), etc.
Author: Kevin Zarca [aut, cre],
Antoine Filipovic-Pierucci [aut],
Matthew Wiener [ctb],
Zdenek Kabat [ctb],
Vojtech Filipec [ctb],
Jordan Amdahl [ctb],
Yonatan Carranza Alarcon [ctb],
Vince Daniels [ctb]
Maintainer: Kevin Zarca <kevin.zarca@gmail.com>
Diff between heemod versions 0.11.0 dated 2019-10-22 and 0.12.0 dated 2020-04-14
heemod-0.11.0/heemod/inst/tabular/thr/output |only heemod-0.11.0/heemod/tests/testthat/Rplots.pdf |only heemod-0.12.0/heemod/DESCRIPTION | 12 - heemod-0.12.0/heemod/MD5 | 142 ++++++-------- heemod-0.12.0/heemod/NAMESPACE | 5 heemod-0.12.0/heemod/NEWS.md | 6 heemod-0.12.0/heemod/R/heemod.R | 3 heemod-0.12.0/heemod/R/look_up.R | 17 + heemod-0.12.0/heemod/R/part_surv.R | 4 heemod-0.12.0/heemod/R/sensitivity_define.R | 5 heemod-0.12.0/heemod/R/sensitivity_eval.R | 12 + heemod-0.12.0/heemod/README.md | 2 heemod-0.12.0/heemod/build/vignette.rds |binary heemod-0.12.0/heemod/inst/doc/a_introduction.R | 20 +- heemod-0.12.0/heemod/inst/doc/a_introduction.html | 21 -- heemod-0.12.0/heemod/inst/doc/b_time_dependency.R | 4 heemod-0.12.0/heemod/inst/doc/b_time_dependency.html | 15 - heemod-0.12.0/heemod/inst/doc/c_homogeneous.R | 30 +-- heemod-0.12.0/heemod/inst/doc/c_homogeneous.html | 25 +- heemod-0.12.0/heemod/inst/doc/d_non_homogeneous.R | 16 - heemod-0.12.0/heemod/inst/doc/d_non_homogeneous.html | 23 +- heemod-0.12.0/heemod/inst/doc/e_probabilistic.R | 28 +- heemod-0.12.0/heemod/inst/doc/e_probabilistic.html | 53 ++--- heemod-0.12.0/heemod/inst/doc/f_sensitivity.R | 18 - heemod-0.12.0/heemod/inst/doc/f_sensitivity.html | 129 ++++++------- heemod-0.12.0/heemod/inst/doc/g_heterogeneity.R | 20 +- heemod-0.12.0/heemod/inst/doc/g_heterogeneity.html | 163 ++++++++--------- heemod-0.12.0/heemod/inst/doc/h_tabular.R | 16 - heemod-0.12.0/heemod/inst/doc/h_tabular.html | 19 - heemod-0.12.0/heemod/inst/doc/i_reproduction.R | 6 heemod-0.12.0/heemod/inst/doc/i_reproduction.html | 15 - heemod-0.12.0/heemod/inst/doc/j_survival.R | 24 +- heemod-0.12.0/heemod/inst/doc/j_survival.html | 32 +-- heemod-0.12.0/heemod/inst/doc/k_calibration.R | 14 - heemod-0.12.0/heemod/inst/doc/k_calibration.html | 15 - heemod-0.12.0/heemod/man/calibrate_model.Rd | 12 - heemod-0.12.0/heemod/man/compute_surv.Rd | 3 heemod-0.12.0/heemod/man/create_matrix_from_tabular.Rd | 3 heemod-0.12.0/heemod/man/define_calibration_fn.Rd | 10 - heemod-0.12.0/heemod/man/define_part_surv.Rd | 9 heemod-0.12.0/heemod/man/define_strategy.Rd | 7 heemod-0.12.0/heemod/man/define_survival.Rd | 8 heemod-0.12.0/heemod/man/define_transition.Rd | 3 heemod-0.12.0/heemod/man/eval_models_from_tabular.Rd | 8 heemod-0.12.0/heemod/man/eval_resample.Rd | 4 heemod-0.12.0/heemod/man/eval_strategy.Rd | 12 + heemod-0.12.0/heemod/man/eval_surv.Rd | 3 heemod-0.12.0/heemod/man/expand_if_necessary.Rd | 12 + heemod-0.12.0/heemod/man/expand_state.Rd | 3 heemod-0.12.0/heemod/man/heemod.Rd | 1 heemod-0.12.0/heemod/man/look_up.Rd | 2 heemod-0.12.0/heemod/man/make_names.Rd | 2 heemod-0.12.0/heemod/man/parse_multi_spec.Rd | 2 heemod-0.12.0/heemod/man/plot.dsa.Rd | 18 + heemod-0.12.0/heemod/man/plot.psa.Rd | 14 + heemod-0.12.0/heemod/man/plot.run_model.Rd | 16 + heemod-0.12.0/heemod/man/plot.surv_obj.Rd | 11 - heemod-0.12.0/heemod/man/run_model.Rd | 31 ++- heemod-0.12.0/heemod/man/run_model_tabular.Rd | 12 - heemod-0.12.0/heemod/man/run_psa.Rd | 4 heemod-0.12.0/heemod/man/summary.surv_shift.Rd | 3 heemod-0.12.0/heemod/man/update_model.Rd | 10 - heemod-0.12.0/heemod/man/who_mortality.Rd | 20 +- heemod-0.12.0/heemod/tests/testthat/test_look_up.R | 17 + heemod-0.12.0/heemod/tests/testthat/test_parameters.R | 5 heemod-0.12.0/heemod/tests/testthat/test_part_surv.R | 16 - 66 files changed, 647 insertions(+), 548 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-11 0.1.1
More information about themetagenomics at CRAN
Permanent link
Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial data, especially raster data. Methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction. The user-interface is very similar to that of the 'raster' package; but it is simpler and faster. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Roger Bivand [ctb] (install script, GDAL/GEOS code),
Karl Forner [ctb] (progress bar),
Charles Karney [ctb] (GeographicLib),
Edzer Pebesma [ctb] (GDAL/GEOS code from sf),
Darel Finley [ctb] (polygon fill approach)
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 0.5-2 dated 2020-03-20 and 0.5-8 dated 2020-04-14
terra-0.5-2/terra/src/rasterFromFile.cpp |only terra-0.5-8/terra/DESCRIPTION | 12 - terra-0.5-8/terra/MD5 | 199 +++++++++---------- terra-0.5-8/terra/NAMESPACE | 2 terra-0.5-8/terra/R/AAgeneric_functions.R | 13 + terra-0.5-8/terra/R/aggregate.R | 7 terra-0.5-8/terra/R/app.R | 8 terra-0.5-8/terra/R/arith.R | 62 +++++ terra-0.5-8/terra/R/dimensions.R | 8 terra-0.5-8/terra/R/extract.R | 9 terra-0.5-8/terra/R/focal.R | 13 - terra-0.5-8/terra/R/generics.R | 7 terra-0.5-8/terra/R/ifelse.R | 9 terra-0.5-8/terra/R/init.R | 2 terra-0.5-8/terra/R/interpolate.R | 2 terra-0.5-8/terra/R/levels.R | 8 terra-0.5-8/terra/R/math.R | 2 terra-0.5-8/terra/R/options.R | 2 terra-0.5-8/terra/R/overlay.R | 2 terra-0.5-8/terra/R/plotRaster.R | 29 +- terra-0.5-8/terra/R/predict.R | 2 terra-0.5-8/terra/R/rast.R | 78 +++---- terra-0.5-8/terra/R/read-write.R | 15 - terra-0.5-8/terra/R/sample.R | 48 +++- terra-0.5-8/terra/R/show.R | 6 terra-0.5-8/terra/R/subset.R | 5 terra-0.5-8/terra/R/tapp.R | 2 terra-0.5-8/terra/R/zzz.R | 18 - terra-0.5-8/terra/cleanup |only terra-0.5-8/terra/configure | 4 terra-0.5-8/terra/configure.ac | 3 terra-0.5-8/terra/man/click.Rd | 8 terra-0.5-8/terra/man/extract.Rd | 6 terra-0.5-8/terra/man/factors.Rd | 5 terra-0.5-8/terra/man/focal.Rd | 39 ++- terra-0.5-8/terra/man/ifelse.Rd | 4 terra-0.5-8/terra/man/isLonLat.Rd | 2 terra-0.5-8/terra/man/local.Rd | 17 + terra-0.5-8/terra/man/math.Rd | 52 +++- terra-0.5-8/terra/man/readwrite.Rd | 8 terra-0.5-8/terra/man/sample.Rd | 25 ++ terra-0.5-8/terra/man/sources.Rd | 2 terra-0.5-8/terra/man/subset.Rd | 6 terra-0.5-8/terra/man/terra-package.Rd | 7 terra-0.5-8/terra/man/zoom.Rd | 6 terra-0.5-8/terra/src/NA.h | 2 terra-0.5-8/terra/src/RcppModule.cpp | 13 - terra-0.5-8/terra/src/aggregate.cpp | 34 --- terra-0.5-8/terra/src/area.cpp | 2 terra-0.5-8/terra/src/arith.cpp | 29 -- terra-0.5-8/terra/src/categories.cpp | 2 terra-0.5-8/terra/src/cellnumber.cpp | 16 - terra-0.5-8/terra/src/crs.cpp | 3 terra-0.5-8/terra/src/date.h | 3 terra-0.5-8/terra/src/distRaster.cpp | 2 terra-0.5-8/terra/src/distance.cpp | 2 terra-0.5-8/terra/src/distance.h | 2 terra-0.5-8/terra/src/extent.cpp | 18 - terra-0.5-8/terra/src/extract.cpp | 12 - terra-0.5-8/terra/src/file_utils.cpp | 18 + terra-0.5-8/terra/src/file_utils.h | 2 terra-0.5-8/terra/src/focal.cpp | 196 ++++++++++-------- terra-0.5-8/terra/src/gdal.cpp | 2 terra-0.5-8/terra/src/math_utils.cpp | 20 - terra-0.5-8/terra/src/math_utils.h | 2 terra-0.5-8/terra/src/memory.cpp | 7 terra-0.5-8/terra/src/memory.h | 2 terra-0.5-8/terra/src/modal.cpp | 2 terra-0.5-8/terra/src/names.cpp | 2 terra-0.5-8/terra/src/pointInPolygon.cpp | 2 terra-0.5-8/terra/src/ram.cpp | 2 terra-0.5-8/terra/src/ram.h | 2 terra-0.5-8/terra/src/raster_coerce.cpp | 55 ++++- terra-0.5-8/terra/src/raster_methods.cpp | 140 +++++++++---- terra-0.5-8/terra/src/raster_stats.cpp | 6 terra-0.5-8/terra/src/read.cpp | 2 terra-0.5-8/terra/src/read_gdal.cpp | 85 +++++--- terra-0.5-8/terra/src/read_ogr.cpp | 6 terra-0.5-8/terra/src/reclassify.cpp | 2 terra-0.5-8/terra/src/recycle.h | 2 terra-0.5-8/terra/src/sample.cpp | 101 ++++++++- terra-0.5-8/terra/src/sources.cpp | 35 ++- terra-0.5-8/terra/src/spatBase.h | 13 - terra-0.5-8/terra/src/spatDataframe.cpp | 2 terra-0.5-8/terra/src/spatDataframe.h | 2 terra-0.5-8/terra/src/spatMessages.h | 2 terra-0.5-8/terra/src/spatOptions.cpp | 2 terra-0.5-8/terra/src/spatRaster.cpp | 6 terra-0.5-8/terra/src/spatRaster.h | 30 +- terra-0.5-8/terra/src/spatVector.cpp | 2 terra-0.5-8/terra/src/spatVector.h | 2 terra-0.5-8/terra/src/string_utils.cpp | 22 ++ terra-0.5-8/terra/src/string_utils.h | 4 terra-0.5-8/terra/src/terrain.cpp | 4 terra-0.5-8/terra/src/vecmath.h | 114 +++++++++- terra-0.5-8/terra/src/vecmathfun.cpp |only terra-0.5-8/terra/src/vecmathfun.h |only terra-0.5-8/terra/src/write.cpp | 2 terra-0.5-8/terra/src/write_gdal.cpp | 2 terra-0.5-8/terra/src/write_mem.cpp | 2 terra-0.5-8/terra/src/write_ogr.cpp | 4 terra-0.5-8/terra/tests/testthat/test-geom.R | 12 - terra-0.5-8/terra/tests/testthat/test-matrix-input.R |only 103 files changed, 1179 insertions(+), 645 deletions(-)
Title: Read 'Excel' Binary (.xlsb) Workbooks
Description: Import data from 'Excel' binary (.xlsb) workbooks into R.
Author: Michael Allen [aut, cre]
Maintainer: Michael Allen <michael@velofrog.com>
Diff between readxlsb versions 0.1.2 dated 2019-09-12 and 0.1.3 dated 2020-04-14
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/read_xlsb.R | 4 ++-- README.md | 4 ---- build/vignette.rds |binary inst/doc/read-xlsb-workbook.R | 8 ++++---- inst/doc/read-xlsb-workbook.html | 39 ++++++++++++++++++--------------------- src/StreamReader.cpp | 5 +++-- 8 files changed, 39 insertions(+), 45 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.9.850.1.0 dated 2020-02-09 and 0.9.860.2.0 dated 2020-04-14
RcppArmadillo-0.9.850.1.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.R |only RcppArmadillo-0.9.850.1.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.R |only RcppArmadillo-0.9.850.1.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.Rmd |only RcppArmadillo-0.9.850.1.0/RcppArmadillo/vignettes/RcppArmadillo-sparseMatrix.Rmd |only RcppArmadillo-0.9.850.1.0/RcppArmadillo/vignettes/RcppArmadillo.bib |only RcppArmadillo-0.9.850.1.0/RcppArmadillo/vignettes/elsarticle-harv.bst |only RcppArmadillo-0.9.850.1.0/RcppArmadillo/vignettes/elsarticle.cls |only RcppArmadillo-0.9.850.1.0/RcppArmadillo/vignettes/kalmanExample.pdf |only RcppArmadillo-0.9.860.2.0/RcppArmadillo/ChangeLog | 56 RcppArmadillo-0.9.860.2.0/RcppArmadillo/DESCRIPTION | 12 RcppArmadillo-0.9.860.2.0/RcppArmadillo/MD5 | 105 - RcppArmadillo-0.9.860.2.0/RcppArmadillo/README.md | 83 RcppArmadillo-0.9.860.2.0/RcppArmadillo/build/vignette.rds |binary RcppArmadillo-0.9.860.2.0/RcppArmadillo/configure | 21 RcppArmadillo-0.9.860.2.0/RcppArmadillo/configure.ac | 2 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/NEWS.Rd | 15 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.Rnw | 918 ---------- RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.Rnw |only RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo | 3 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/Base_meat.hpp | 12 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 48 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 3 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 124 - RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_bones.hpp | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 449 ++-- RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_bones.hpp | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 23 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/compiler_setup.hpp | 1 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 27 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp.cmake | 27 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/fn_accu.hpp | 112 + RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/fn_clamp.hpp | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/fn_det.hpp | 49 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/fn_powmat.hpp |only RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/glue_solve_meat.hpp | 4 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/glue_times_meat.hpp | 8 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/include_hdf5.hpp | 4 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_chol_meat.hpp | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_cond_meat.hpp | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_expmat_meat.hpp | 45 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_inv_bones.hpp | 4 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_inv_meat.hpp | 67 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_logmat_meat.hpp | 143 + RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_powmat_bones.hpp |only RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_powmat_meat.hpp |only RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_sqrtmat_meat.hpp | 154 + RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/op_wishrnd_meat.hpp | 4 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/spglue_times_meat.hpp | 71 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/subview_bones.hpp | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/subview_meat.hpp | 54 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/include/armadillo_bits/sympd_helper.hpp | 35 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/tinytest/test_complex.R | 8 RcppArmadillo-0.9.860.2.0/RcppArmadillo/inst/tinytest/test_scipy2r.R | 6 RcppArmadillo-0.9.860.2.0/RcppArmadillo/vignettes/RcppArmadillo-intro.Rnw | 918 ---------- RcppArmadillo-0.9.860.2.0/RcppArmadillo/vignettes/RcppArmadillo-sparseMatrix.Rnw |only RcppArmadillo-0.9.860.2.0/RcppArmadillo/vignettes/pdf |only 60 files changed, 1345 insertions(+), 2318 deletions(-)
Title: Public Key Infrastucture for R Based on the X.509 Standard
Description: PKI functions such as verifying certificates, RSA encription and signing which can be used to build PKI infrastructure and perform cryptographic tasks.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between PKI versions 0.1-5.1 dated 2017-09-16 and 0.1-7 dated 2020-04-14
DESCRIPTION | 9 ++++--- MD5 | 15 ++++++------ NEWS | 17 ++++++++++++- R/rsa.R | 3 +- configure | 71 +++++++++++++++++++++++++++++++++++++++++++++++++++++++-- configure.ac | 22 ++++++++++++++++- man/RSA.Rd | 9 ++++++- src/pki-x509.c | 14 ++++++----- tests |only 9 files changed, 136 insertions(+), 24 deletions(-)
Title: Keyboard and Mouse Input Simulation for Windows OS
Description: Control your keyboard and mouse with R code by simulating key presses and mouse clicks. The input simulation is implemented with the Windows API.
Author: Jim Chen [aut, cre],
Jeff Keller [aut, ctb],
Garry Hopwood [ctb],
Chieh Hsu [ctb]
Maintainer: Jim Chen <jim71183@gmail.com>
Diff between KeyboardSimulator versions 2.2.0 dated 2020-03-30 and 2.5.0 dated 2020-04-14
DESCRIPTION | 12 + MD5 | 15 +- NAMESPACE | 1 NEWS | 7 + R/keyboard_value.R | 284 ++++++++++++++++++++++++++++++++--------------- R/main.R | 88 ++++++++------ README.md | 3 man/keybd.type_string.Rd |only man/keyboard_value.Rd | 62 +++++++++- 9 files changed, 338 insertions(+), 134 deletions(-)
More information about KeyboardSimulator at CRAN
Permanent link
Title: A Flexible Algorithm for Model Selection
Description: Given a set of parameters describing model dynamics and a corresponding cost function,
FAMoS performs a dynamic forward-backward model selection on a specified selection
criterion. It also applies a non-local swap search method. Works on any cost function.
For detailed information see Gabel et al. (2019) <doi:10.1371/journal.pcbi.1007230>.
Author: Michael Gabel, Tobias Hohl
Maintainer: Michael Gabel <m_gabel@gmx.de>
Diff between FAMoS versions 0.2.0 dated 2019-05-26 and 0.3.0 dated 2020-04-14
DESCRIPTION | 11 MD5 | 74 NAMESPACE | 34 NEWS.md | 34 R/base_optim_function.R | 641 +-- R/combine_and_fit_function.R | 4 R/combine_par_function.R | 12 R/famos_function.R | 1970 +++++----- R/famos_performance_function.R | 7 R/get_most_distant_function.R | 10 R/model_appr_function.R | 26 README.md | 110 build/vignette.rds |binary inst/doc/FAMoS-EvaluationFunctions.R | 216 - inst/doc/FAMoS-EvaluationFunctions.Rmd | 6 inst/doc/FAMoS-EvaluationFunctions.html | 1339 +++--- inst/doc/FAMoS-Examples.R | 266 - inst/doc/FAMoS-Examples.html | 1442 +++---- man/aicc.weights.Rd | 3 man/base.optim.Rd | 22 man/combine.and.fit.Rd | 7 man/famos.Rd | 48 man/famos.performance.Rd | 10 man/famos.run.Rd | 36 man/get.most.distant.Rd | 2 man/sc.order.Rd | 10 vignettes/FAMoS-EvaluationFunctions.Rmd | 6 vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/aicc.weights-1.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/createdata-1.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/createdata-2.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/createdata-3.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/createdata-4.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/createdata-5.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/createdata-6.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/createdata-7.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/famosperformance-1.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/sc.order-1.png |binary vignettes/FAMoS-EvaluationFunctions_files/figure-gfm/sc.order2-1.png |binary 38 files changed, 3265 insertions(+), 3081 deletions(-)
Title: Bayesian Network Belief Propagation
Description: Belief propagation methods in Bayesian Networks to propagate evidence through the network. The implementation of these methods are based on the article: Cowell, RG (2005). Local Propagation in Conditional Gaussian Bayesian Networks <http://www.jmlr.org/papers/volume6/cowell05a/>. The optional 'cyjShiny' package for running the Shiny app is available at <https://github.com/cytoscape/cyjShiny>. Please see the example in the documentation of 'runBayesNetApp' function for installing 'cyjShiny' package from GitHub.
Author: Han Yu, Rachael Blair, Janhavi Moharil, Andrew Yan
Maintainer: Han Yu <hyu9@buffalo.edu>
Diff between BayesNetBP versions 1.4.0 dated 2018-08-22 and 1.5.2 dated 2020-04-14
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Title: Dimension Reduction and Estimation Methods
Description: We provide linear and nonlinear dimension reduction techniques.
Intrinsic dimension estimation methods for exploratory analysis are also provided.
For more details on dimensionality techniques, see the paper by
Ma and Zhu (2013) <doi:10.1111/j.1751-5823.2012.00182.x> if you are interested in
statistical approach, or Engel, Huttenberger, and Hamann (2012)
<doi:10.4230/OASIcs.VLUDS.2011.135> for a broader multi-disciplinary overview.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>),
Changhee Suh [ctb]
Maintainer: Kisung You <kyoustat@gmail.com>
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Rdimtools-1.0.0/Rdimtools/man/linear_ISOPROJ.Rd | 16 Rdimtools-1.0.0/Rdimtools/man/linear_KMVP.Rd | 35 Rdimtools-1.0.0/Rdimtools/man/linear_KUDP.Rd | 18 Rdimtools-1.0.0/Rdimtools/man/linear_LASSO.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_LDA.Rd | 8 Rdimtools-1.0.0/Rdimtools/man/linear_LDAKM.Rd | 17 Rdimtools-1.0.0/Rdimtools/man/linear_LDE.Rd | 22 Rdimtools-1.0.0/Rdimtools/man/linear_LDP.Rd | 17 Rdimtools-1.0.0/Rdimtools/man/linear_LEA.Rd | 18 Rdimtools-1.0.0/Rdimtools/man/linear_LFDA.Rd | 19 Rdimtools-1.0.0/Rdimtools/man/linear_LLP.Rd | 19 Rdimtools-1.0.0/Rdimtools/man/linear_LLTSA.Rd | 18 Rdimtools-1.0.0/Rdimtools/man/linear_LMDS.Rd | 19 Rdimtools-1.0.0/Rdimtools/man/linear_LPCA.Rd | 18 Rdimtools-1.0.0/Rdimtools/man/linear_LPE.Rd | 18 Rdimtools-1.0.0/Rdimtools/man/linear_LPFDA.Rd | 19 Rdimtools-1.0.0/Rdimtools/man/linear_LPMIP.Rd | 23 Rdimtools-1.0.0/Rdimtools/man/linear_LPP.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_LQMI.Rd | 24 Rdimtools-1.0.0/Rdimtools/man/linear_LSCORE.Rd | 42 Rdimtools-1.0.0/Rdimtools/man/linear_LSDA.Rd | 20 Rdimtools-1.0.0/Rdimtools/man/linear_LSDF.Rd | 23 Rdimtools-1.0.0/Rdimtools/man/linear_LSIR.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_LSPE.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_LSPP.Rd | 15 Rdimtools-1.0.0/Rdimtools/man/linear_MCFS.Rd | 22 Rdimtools-1.0.0/Rdimtools/man/linear_MDS.Rd | 23 Rdimtools-1.0.0/Rdimtools/man/linear_MFA.Rd | 19 Rdimtools-1.0.0/Rdimtools/man/linear_MLIE.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_MMC.Rd | 14 Rdimtools-1.0.0/Rdimtools/man/linear_MMP.Rd | 20 Rdimtools-1.0.0/Rdimtools/man/linear_MMSD.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_MODP.Rd | 22 Rdimtools-1.0.0/Rdimtools/man/linear_MSD.Rd | 19 Rdimtools-1.0.0/Rdimtools/man/linear_MVP.Rd | 28 Rdimtools-1.0.0/Rdimtools/man/linear_NOLPP.Rd | 36 Rdimtools-1.0.0/Rdimtools/man/linear_NONPP.Rd | 33 Rdimtools-1.0.0/Rdimtools/man/linear_NPCA.Rd | 31 Rdimtools-1.0.0/Rdimtools/man/linear_NPE.Rd | 25 Rdimtools-1.0.0/Rdimtools/man/linear_NRSR.Rd | 27 Rdimtools-1.0.0/Rdimtools/man/linear_ODP.Rd | 32 Rdimtools-1.0.0/Rdimtools/man/linear_OLDA.Rd | 30 Rdimtools-1.0.0/Rdimtools/man/linear_OLPP.Rd | 25 Rdimtools-1.0.0/Rdimtools/man/linear_ONPP.Rd | 29 Rdimtools-1.0.0/Rdimtools/man/linear_OPLS.Rd | 6 Rdimtools-1.0.0/Rdimtools/man/linear_PCA.Rd | 32 Rdimtools-1.0.0/Rdimtools/man/linear_PFLPP.Rd | 13 Rdimtools-1.0.0/Rdimtools/man/linear_PLS.Rd | 6 Rdimtools-1.0.0/Rdimtools/man/linear_PPCA.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_RLDA.Rd |only Rdimtools-1.0.0/Rdimtools/man/linear_RNDPROJ.Rd | 32 Rdimtools-1.0.0/Rdimtools/man/linear_RPCAG.Rd |only Rdimtools-1.0.0/Rdimtools/man/linear_RSIR.Rd | 30 Rdimtools-1.0.0/Rdimtools/man/linear_RSR.Rd | 26 Rdimtools-1.0.0/Rdimtools/man/linear_SAMMC.Rd | 22 Rdimtools-1.0.0/Rdimtools/man/linear_SAVE.Rd | 23 Rdimtools-1.0.0/Rdimtools/man/linear_SDA.Rd | 23 Rdimtools-1.0.0/Rdimtools/man/linear_SDLPP.Rd | 30 Rdimtools-1.0.0/Rdimtools/man/linear_SIR.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_SLPE.Rd | 28 Rdimtools-1.0.0/Rdimtools/man/linear_SLPP.Rd | 27 Rdimtools-1.0.0/Rdimtools/man/linear_SPC.Rd | 19 Rdimtools-1.0.0/Rdimtools/man/linear_SPCA.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/linear_SPECS.Rd |only Rdimtools-1.0.0/Rdimtools/man/linear_SPECU.Rd |only Rdimtools-1.0.0/Rdimtools/man/linear_SPP.Rd | 24 Rdimtools-1.0.0/Rdimtools/man/linear_SPUFS.Rd | 27 Rdimtools-1.0.0/Rdimtools/man/linear_SSLDP.Rd | 39 Rdimtools-1.0.0/Rdimtools/man/linear_UDFS.Rd | 29 Rdimtools-1.0.0/Rdimtools/man/linear_UDP.Rd | 24 Rdimtools-1.0.0/Rdimtools/man/linear_ULDA.Rd | 28 Rdimtools-1.0.0/Rdimtools/man/nonlinear_BMDS.Rd |only Rdimtools-1.0.0/Rdimtools/man/nonlinear_CGE.Rd |only Rdimtools-1.0.0/Rdimtools/man/nonlinear_CISOMAP.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/nonlinear_CRCA.Rd | 15 Rdimtools-1.0.0/Rdimtools/man/nonlinear_CRDA.Rd | 22 Rdimtools-1.0.0/Rdimtools/man/nonlinear_DM.Rd | 21 Rdimtools-1.0.0/Rdimtools/man/nonlinear_DVE.Rd | 19 Rdimtools-1.0.0/Rdimtools/man/nonlinear_FastMap.Rd | 19 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Rdimtools-1.0.0/Rdimtools/src/methods_linear.h | 1 Rdimtools-1.0.0/Rdimtools/src/methods_nonlinear.cpp | 249 +++ Rdimtools-1.0.0/Rdimtools/src/methods_nonlinear.h | 13 337 files changed, 4466 insertions(+), 3154 deletions(-)
Title: Missing Morphometric Data Simulation and Estimation
Description: Functions for simulating missing morphometric
data randomly, with taxonomic bias and with anatomical bias. LOST also
includes functions for estimating linear and geometric morphometric data.
Author: J. Arbour,
C. Brown
Maintainer: J. Arbour <jessica.arbour@mtsu.edu>
Diff between LOST versions 1.3 dated 2017-04-20 and 2.0.2 dated 2020-04-14
DESCRIPTION | 14 +-- MD5 | 48 ++++++----- NAMESPACE | 5 - R/MissingGeoMorph.R | 190 ++++++++++++++++------------------------------- R/align.missing.R | 125 +++++++----------------------- R/byclade.R | 65 +++++++++++++++- R/flipped.R | 4 R/how.many.missing.R | 1 R/missing.data.R | 105 ++++++++++++++++++++++++- R/obliterator.R | 20 +--- R/obliteratorGM.R |only data/crocs.landmarks.rda |binary data/crocs.rda |binary data/dacrya.rda |binary man/LOST-package.Rd | 8 - man/MissingGeoMorph.Rd | 10 +- man/align.missing.Rd | 22 +---- man/byclade.Rd | 11 -- man/dacrya.Rd | 6 - man/est.reg.Rd | 12 -- man/flipped.Rd | 7 + man/how.many.missing.Rd | 11 -- man/missing.data.Rd | 27 +++++- man/missing.specimens.Rd | 6 - man/obliterator.Rd | 4 man/obliteratorGM.Rd |only 26 files changed, 358 insertions(+), 343 deletions(-)
Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression and classification models
and get relevant evaluation metrics in a tidy format. Validate the
best model on a test set and compare it to a baseline evaluation.
Alternatively, evaluate predictions from an external model. Currently
supports regression and classification (binary and multiclass).
Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R.,
& Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre],
Benjamin Hugh Zachariae [aut]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between cvms versions 0.3.2 dated 2019-12-01 and 1.0.0 dated 2020-04-14
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cvms-1.0.0/cvms/man/multinomial_metrics.Rd |only cvms-1.0.0/cvms/man/musicians.Rd |only cvms-1.0.0/cvms/man/participant.scores.Rd | 6 cvms-1.0.0/cvms/man/plot_confusion_matrix.Rd |only cvms-1.0.0/cvms/man/plot_metric_density.Rd |only cvms-1.0.0/cvms/man/precomputed.formulas.Rd | 6 cvms-1.0.0/cvms/man/predict_functions.Rd |only cvms-1.0.0/cvms/man/predicted.musicians.Rd |only cvms-1.0.0/cvms/man/preprocess_functions.Rd |only cvms-1.0.0/cvms/man/reconstruct_formulas.Rd | 16 cvms-1.0.0/cvms/man/select_definitions.Rd |only cvms-1.0.0/cvms/man/select_metrics.Rd | 14 cvms-1.0.0/cvms/man/simplify_formula.Rd |only cvms-1.0.0/cvms/man/summarize_metrics.Rd |only cvms-1.0.0/cvms/man/update_hyperparameters.Rd |only cvms-1.0.0/cvms/man/validate.Rd | 274 cvms-1.0.0/cvms/man/validate_fn.Rd |only cvms-1.0.0/cvms/man/wines.Rd |only cvms-1.0.0/cvms/tests/testthat/test_baseline.R | 4893 +++++-- cvms-1.0.0/cvms/tests/testthat/test_choosing_metrics.R |only 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|only cvms-1.0.0/cvms/tests/testthat/test_select_metrics.R |only cvms-1.0.0/cvms/tests/testthat/test_set_metrics.R |only cvms-1.0.0/cvms/tests/testthat/test_simplify_formula.R |only cvms-1.0.0/cvms/tests/testthat/test_softmax.R |only cvms-1.0.0/cvms/tests/testthat/test_summarize_metrics.R |only cvms-1.0.0/cvms/tests/testthat/test_update_hyperparameters.R |only cvms-1.0.0/cvms/tests/testthat/test_validate.R | 1262 + cvms-1.0.0/cvms/tests/testthat/test_validate_fn.R |only cvms-1.0.0/cvms/tests/testthat/test_validate_fold.R |only cvms-1.0.0/cvms/vignettes/available_metrics.Rmd |only cvms-1.0.0/cvms/vignettes/creating_a_confusion_matrix.Rmd |only cvms-1.0.0/cvms/vignettes/cross_validating_custom_functions.Rmd |only cvms-1.0.0/cvms/vignettes/evaluate_by_id.Rmd |only cvms-1.0.0/cvms/vignettes/man/figures/vignette_conf_mat-unnamed-chunk-12-1.png |only cvms-1.0.0/cvms/vignettes/man/figures/vignette_conf_mat-unnamed-chunk-13-1.png |only 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Title: Simulating Realistic Gene Expression and Clinical Data
Description: The Ultimate Microrray Prediction, Reality and Inference
Engine (UMPIRE) is a package to facilitate the simulation of realistic
microarray data sets with links to associated outcomes. See Zhang and
Coombes (2012) <doi:10.1186/1471-2105-13-S13-S1>. Version 2.0 adds the
ability to simulate realistic mixed-typed clinical data.
Author: Kevin R. Coombes, Jiexin Zhang, Caitlin E. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Umpire versions 1.3.9 dated 2020-02-03 and 2.0.0 dated 2020-04-14
DESCRIPTION | 22 +++--- MD5 | 54 ++++++++++------- NAMESPACE | 10 +-- R/AllGenerics.R | 4 + R/e00-engine.R | 4 - R/e04-hit.R | 16 +++++ R/e05-noise.R | 16 +++++ R/e08-cancerEngine.R | 12 +++ R/e11-clinical.R |only TODO | 107 +++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/Umpire.pdf |binary inst/doc/Umpire2.R |only inst/doc/Umpire2.Rmd |only inst/doc/Umpire2.html |only man/e01-Engine-class.Rd | 4 - man/e04-IndependentLogNormal-class.Rd | 7 ++ man/e05-MVN-class.Rd | 24 +++---- man/e08-transforms.Rd | 4 - man/e09-NoiseModel-class.Rd | 13 ++-- man/e11-SurvivalModel-class.Rd | 19 ++---- man/e13-CancerModel-class.Rd | 10 +-- man/e14-CancerEngine-class.Rd | 54 ++++++++++++++++- man/e15-BlockHyperParameters-class.Rd | 30 ++++----- man/e20-alterMean-method.Rd | 4 - man/e21-blur-method.Rd | 2 man/e22-rand-method.Rd | 4 - man/e23-nComponents-method.Rd |only man/e30-clinicalNoiseModel.Rd |only man/e31-setDataTypes.Rd |only man/e32-mixedTypeEngine.Rd |only tests/t20-mixed.R |only vignettes/Umpire2.Rmd |only 33 files changed, 276 insertions(+), 144 deletions(-)
Title: Extra 'Recipes' for Text Processing
Description: Converting text to numerical features requires
specifically created procedures, which are implemented as steps
according to the 'recipes' package. These steps allows for
tokenization, filtering, counting (tf and tfidf) and feature hashing.
Author: Emil Hvitfeldt [aut, cre] (<https://orcid.org/0000-0002-0679-1945>)
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between textrecipes versions 0.1.0 dated 2020-03-05 and 0.2.0 dated 2020-04-14
textrecipes-0.1.0/textrecipes/R/data.R |only textrecipes-0.1.0/textrecipes/data |only textrecipes-0.1.0/textrecipes/man/okc_text.Rd |only textrecipes-0.2.0/textrecipes/DESCRIPTION | 18 textrecipes-0.2.0/textrecipes/MD5 | 134 ++- textrecipes-0.2.0/textrecipes/NAMESPACE | 29 textrecipes-0.2.0/textrecipes/NEWS.md | 9 textrecipes-0.2.0/textrecipes/R/0_imports.R | 3 textrecipes-0.2.0/textrecipes/R/RcppExports.R |only textrecipes-0.2.0/textrecipes/R/aaa.R | 33 textrecipes-0.2.0/textrecipes/R/embeddings.R | 72 +- textrecipes-0.2.0/textrecipes/R/hashing.R | 51 - textrecipes-0.2.0/textrecipes/R/lda.R | 10 textrecipes-0.2.0/textrecipes/R/lemma.R |only textrecipes-0.2.0/textrecipes/R/ngram.R |only textrecipes-0.2.0/textrecipes/R/pos_filter.R |only textrecipes-0.2.0/textrecipes/R/sequence_onehot.R | 16 textrecipes-0.2.0/textrecipes/R/stem.R | 25 textrecipes-0.2.0/textrecipes/R/stopwords.R | 28 textrecipes-0.2.0/textrecipes/R/textfeature.R | 16 textrecipes-0.2.0/textrecipes/R/textrecipes-package.R |only textrecipes-0.2.0/textrecipes/R/tf.R | 77 +- textrecipes-0.2.0/textrecipes/R/tfidf.R | 94 +- textrecipes-0.2.0/textrecipes/R/tokenfilter.R | 72 +- textrecipes-0.2.0/textrecipes/R/tokenize.R | 184 +++-- textrecipes-0.2.0/textrecipes/R/tokenizer-spacyr.R |only textrecipes-0.2.0/textrecipes/R/tokenlist.R |only textrecipes-0.2.0/textrecipes/R/tokenmerge.R | 24 textrecipes-0.2.0/textrecipes/R/untokenize.R | 22 textrecipes-0.2.0/textrecipes/README.md | 64 - textrecipes-0.2.0/textrecipes/build/vignette.rds |binary textrecipes-0.2.0/textrecipes/inst/doc/Working-with-n-grams.R |only textrecipes-0.2.0/textrecipes/inst/doc/Working-with-n-grams.Rmd |only textrecipes-0.2.0/textrecipes/inst/doc/Working-with-n-grams.html |only textrecipes-0.2.0/textrecipes/inst/doc/cookbook---using-more-complex-recipes-involving-text.R | 15 textrecipes-0.2.0/textrecipes/inst/doc/cookbook---using-more-complex-recipes-involving-text.Rmd | 15 textrecipes-0.2.0/textrecipes/inst/doc/cookbook---using-more-complex-recipes-involving-text.html | 357 ++++------ textrecipes-0.2.0/textrecipes/inst/doc/tokenlist.R |only textrecipes-0.2.0/textrecipes/inst/doc/tokenlist.Rmd |only textrecipes-0.2.0/textrecipes/inst/doc/tokenlist.html |only textrecipes-0.2.0/textrecipes/man/rcpp_ngram.Rd |only textrecipes-0.2.0/textrecipes/man/step_lda.Rd | 34 textrecipes-0.2.0/textrecipes/man/step_lemma.Rd |only textrecipes-0.2.0/textrecipes/man/step_ngram.Rd |only textrecipes-0.2.0/textrecipes/man/step_pos_filter.Rd |only textrecipes-0.2.0/textrecipes/man/step_sequence_onehot.Rd | 52 - textrecipes-0.2.0/textrecipes/man/step_stem.Rd | 53 - textrecipes-0.2.0/textrecipes/man/step_stopwords.Rd | 63 + textrecipes-0.2.0/textrecipes/man/step_textfeature.Rd | 56 - textrecipes-0.2.0/textrecipes/man/step_texthash.Rd | 68 + textrecipes-0.2.0/textrecipes/man/step_tf.Rd | 84 +- textrecipes-0.2.0/textrecipes/man/step_tfidf.Rd | 82 +- textrecipes-0.2.0/textrecipes/man/step_tokenfilter.Rd | 62 - textrecipes-0.2.0/textrecipes/man/step_tokenize.Rd | 87 +- textrecipes-0.2.0/textrecipes/man/step_tokenmerge.Rd | 46 - textrecipes-0.2.0/textrecipes/man/step_untokenize.Rd | 44 - textrecipes-0.2.0/textrecipes/man/step_word_embeddings.Rd | 64 - textrecipes-0.2.0/textrecipes/man/textrecipes-package.Rd |only textrecipes-0.2.0/textrecipes/man/tokenlist.Rd |only textrecipes-0.2.0/textrecipes/man/tunable.step_ngram.Rd |only textrecipes-0.2.0/textrecipes/src |only textrecipes-0.2.0/textrecipes/tests/testthat/helper-functions.R |only textrecipes-0.2.0/textrecipes/tests/testthat/test-embeddings.R | 17 textrecipes-0.2.0/textrecipes/tests/testthat/test-hashing.R | 7 textrecipes-0.2.0/textrecipes/tests/testthat/test-lda.R | 4 textrecipes-0.2.0/textrecipes/tests/testthat/test-lemma.R |only textrecipes-0.2.0/textrecipes/tests/testthat/test-ngram.R |only textrecipes-0.2.0/textrecipes/tests/testthat/test-pos_filter.R |only textrecipes-0.2.0/textrecipes/tests/testthat/test-sequence_onehot.R | 6 textrecipes-0.2.0/textrecipes/tests/testthat/test-stem.R | 24 textrecipes-0.2.0/textrecipes/tests/testthat/test-stopwords.R | 16 textrecipes-0.2.0/textrecipes/tests/testthat/test-textfeature.R | 11 textrecipes-0.2.0/textrecipes/tests/testthat/test-tf.R | 11 textrecipes-0.2.0/textrecipes/tests/testthat/test-tfidf.R | 7 textrecipes-0.2.0/textrecipes/tests/testthat/test-tokenfilter.R | 41 - textrecipes-0.2.0/textrecipes/tests/testthat/test-tokenize.R | 57 + textrecipes-0.2.0/textrecipes/tests/testthat/test-tokenizer-spacyr.R |only textrecipes-0.2.0/textrecipes/tests/testthat/test-tokenlist.R |only textrecipes-0.2.0/textrecipes/tests/testthat/test-tokenmerge.R | 11 textrecipes-0.2.0/textrecipes/tests/testthat/test-untokenize.R | 8 textrecipes-0.2.0/textrecipes/vignettes/Working-with-n-grams.Rmd |only textrecipes-0.2.0/textrecipes/vignettes/cookbook---using-more-complex-recipes-involving-text.Rmd | 15 textrecipes-0.2.0/textrecipes/vignettes/tokenlist.Rmd |only 83 files changed, 1335 insertions(+), 1063 deletions(-)
Title: Get the Timezone Information
Description: A function to retrieve the system timezone on Unix systems
which has been found to find an answer when 'Sys.timezone()' has failed.
It is based on an answer by Duane McCully posted on 'StackOverflow', and
adapted to be callable from R. The package also builds on Windows, but
just returns NULL.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gettz versions 0.0.3 dated 2016-11-05 and 0.0.4 dated 2020-04-14
ChangeLog | 15 ++++++++++++++- DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 4 ++-- R/gettz.R | 2 +- README.md | 21 +++++++++++++-------- build/partial.rdb |binary src/init.c |only 8 files changed, 41 insertions(+), 22 deletions(-)