Title: Automated Method for Verbal Autopsy
Description: Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. The methods implemented include 'InterVA4' by Byass et al (2012) <doi:10.3402/gha.v5i0.19281>, 'InterVA5' by Byass at al (2019) <doi:10.1186/s12916-019-1333-6>, 'InSilicoVA' by McCormick et al (2016) <doi:10.1080/01621459.2016.1152191>, 'NBC' by Miasnikof et al (2015) <doi:10.1186/s12916-015-0521-2>, and a replication of 'Tariff' method by James et al (2011) <doi:10.1186/1478-7954-9-31> and Serina, et al. (2015) <doi:10.1186/s12916-015-0527-9>. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics. The 'NBC' method is implemented by the 'nbc4va' package that can be installed from <https://github.com/rrwen/nbc4va>. Note that this package was not developed by authors affiliated with the Institute for Health Metrics and Evaluation and thus unintentional discrepancies may exist in the implementation of the 'Tariff' method.
Author: Zehang Richard Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Richard Li <lizehang@gmail.com>
Diff between openVA versions 1.0.9 dated 2020-02-18 and 1.0.10 dated 2020-04-19
DESCRIPTION | 10 +++--- MD5 | 6 ++-- NEWS.md | 4 ++ tests/testthat/tests.stackplot.R | 56 +++++++++++++++++++-------------------- 4 files changed, 40 insertions(+), 36 deletions(-)
Title: Data Used to Illustrate 'Loon' Functionality
Description: Data used as examples in the 'loon' package.
Author: R. Wayne Oldford [aut, cre],
Adrian Waddell [aut]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon.data versions 0.0.6 dated 2019-09-28 and 0.0.8 dated 2020-04-19
DESCRIPTION | 10 ++++---- MD5 | 57 +++++++++++++++++++++++++++++------------------ NEWS.md | 18 ++++++++++++++ R/SAheart.R |only R/SCmolecule.R |only R/alaska_forest.R | 2 - R/binaryalphadigits.R | 6 ++++ R/bone.R |only R/bone_ext.R |only R/digits.R | 3 +- R/elements.R |only R/faces.R | 6 +++- R/frey.R | 10 ++++---- R/igg1.R | 4 ++- R/minority.R | 2 - R/ordalphadigits.R | 3 +- R/ordfrey.R | 3 +- data/SAheart.rda |only data/SCmolecule.rda |only data/bone.rda |only data/bone_ext.rda |only data/datalist | 5 ++++ data/elements.rda |only man/SAheart.Rd |only man/SCmolecule.Rd |only man/alaska_forest.Rd | 2 - man/binaryalphadigits.Rd | 8 +++++- man/bone.Rd |only man/bone_ext.Rd |only man/digits.Rd | 5 +++- man/elements.Rd |only man/faces.Rd | 8 ++++-- man/frey.Rd | 12 ++++++--- man/igg1.Rd | 4 +++ man/minority.Rd | 1 man/ordalphadigits.Rd | 5 +++- man/ordfrey.Rd | 5 +++- 37 files changed, 128 insertions(+), 51 deletions(-)
Title: Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Description: Management of and data extraction from camera trap data in wildlife studies. The package provides a workflow for storing and sorting camera trap photos (and videos), tabulates records of species and individuals, and creates detection/non-detection matrices for occupancy and spatial capture-recapture analyses with great flexibility. In addition, it can visualise species activity data and provides simple mapping functions with GIS export.
Author: Juergen Niedballa [aut, cre] (<https://orcid.org/0000-0002-9187-2116>),
Alexandre Courtiol [aut] (<https://orcid.org/0000-0003-0637-2959>),
Rahel Sollmann [aut],
John Mathai [ctb],
Seth Timothy Wong [ctb],
An The Truong Nguyen [ctb],
Azlan bin Mohamed [ctb],
Andrew Tilker [ctb],
Andreas Wilting [ctb, ths] (<https://orcid.org/0000-0001-5073-9186>)
Maintainer: Juergen Niedballa <camtrapr@gmail.com>
Diff between camtrapR versions 2.0.0 dated 2020-04-17 and 2.0.1 dated 2020-04-19
DESCRIPTION | 9 + MD5 | 23 ++-- NEWS.md | 10 ++ R/exifTagNames.R | 15 +-- inst/doc/camtrapr1.html | 148 +++++++++++++++--------------- inst/doc/camtrapr2.html | 92 +++++++++--------- inst/doc/camtrapr3.R | 6 - inst/doc/camtrapr3.Rmd | 6 - inst/doc/camtrapr3.html | 234 ++++++++++++++++++++++++------------------------ inst/doc/camtrapr4.html | 12 +- man/exifTagNames.Rd | 2 tests/test-all.R |only vignettes/camtrapr3.Rmd | 6 - 13 files changed, 288 insertions(+), 275 deletions(-)
Title: Explainable Outlier Detection Through Decision Tree Conditioning
Description: Will try to fit decision trees that try to "predict" values for each column based on the values of each other column.
Along the way, each time a split is evaluated, it will take the observations that fall into each branch as a homogeneous
cluster in which it will search for outliers in the 1-d distribution of the column being predicted. Outliers are determined
according to confidence intervals in this 1-d distribution, and need to have a large gap with respect to the next observation
in sorted order to be flagged as outliers. Since outliers are searched for in a decision tree branch, it will know the conditions
that make it a rare observation compared to others that meet the same conditions, and the conditions will always be correlated
with the target variable (as it's being predicted from them). Full procedure is described in Cortes (2020) <arXiv:2001.00636>.
Loosely based on the 'GritBot' <https://www.rulequest.com/gritbot-info.html> software.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between outliertree versions 1.1.3 dated 2020-01-12 and 1.2.0 dated 2020-04-19
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- R/RcppExports.R | 4 ++-- R/outliertree.R | 24 ++++++++++++++++++++---- man/outlier.tree.Rd | 39 ++++++++++++++++++++++++++++++++------- man/predict.outliertree.Rd | 3 +-- man/print.outlieroutputs.Rd | 3 +-- man/unpack.outlier.tree.Rd | 4 ++-- src/RcppExports.cpp | 9 +++++---- src/Rwrapper.cpp | 6 +++--- src/clusters.cpp | 2 +- src/fit_model.cpp | 8 ++++---- src/outlier_tree.h | 7 ++++--- src/split.cpp | 8 ++++---- 14 files changed, 97 insertions(+), 56 deletions(-)
Title: Simulation Tools for Planning Vitamin D Studies
Description: Simulation tools for planning Vitamin D studies including
approximation of power. Individual vitamin D status
profiles are simulated, modelling population heterogeneity.
Individuals experience random exposures to infectious agents. Development of infection considers a heterogeneous treatment effect. This is incorporated into the power approximation.
Author: Rebecca Mangan [aut],
Jason Wyse [aut, cre],
Lina Zgaga [aut]
Maintainer: Jason Wyse <wyseja@tcd.ie>
Diff between SimVitD versions 0.1.1 dated 2019-06-14 and 0.1.2 dated 2020-04-19
DESCRIPTION | 6 +-- MD5 | 55 ++++++++++++++++----------------- build/vignette.rds |binary inst/doc/SimVitD.R | 18 +++++----- inst/doc/SimVitD.Rnw | 68 +++++------------------------------------ inst/doc/SimVitD.pdf |binary man/SimVitD-package.Rd | 18 ++++++---- man/exposure.levels.Rd | 1 man/infection.count.Rd | 2 - man/infection.count.plot.Rd | 2 - man/intensity.function.Rd | 3 - man/plot.exposure.levels.Rd | 4 -- man/plot.power.calc.Rd | 2 - man/plot.vitd.curve.Rd | 2 - man/power.calc.Rd | 2 - man/print.exposure.levels.Rd | 2 - man/print.infection.count.Rd | 1 man/print.power.calc.Rd | 3 - man/print.vitd.curve.Rd | 2 - man/pvalue.calc.Rd | 2 - man/rr.curve.plot.Rd | 2 - man/rr.profile.plot.Rd | 2 - man/summary.exposure.levels.Rd | 2 - man/summary.infection.count.Rd | 2 - man/summary.power.calc.Rd | 2 - man/summary.vitd.curve.Rd | 2 - man/vitd.curve.Rd | 2 - vignettes/SimVitD.Rnw | 68 +++++------------------------------------ vignettes/sim-pow-outline.pdf |only 29 files changed, 69 insertions(+), 206 deletions(-)
Title: A Tool Kit for Working with Time Series in R
Description: Easy visualization, wrangling, and preprocessing of time series data for
forecasting and machine learning prediction.
Methods discussed herein are commonplace in machine learning, and have been cited
in various literature. Refer to "Calendar Effects" in papers such as
Taieb, Souhaib Ben. "Machine learning strategies for multi-step-ahead time series
forecasting." Universit Libre de Bruxelles, Belgium (2014): 75-86.
<http://souhaib-bentaieb.com/pdf/2014_phd.pdf>.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between timetk versions 0.1.3 dated 2020-03-18 and 1.0.0 dated 2020-04-19
timetk-0.1.3/timetk/R/global_vars.R |only timetk-0.1.3/timetk/R/tk_augment_timeseries.R |only timetk-0.1.3/timetk/R/tk_get_timeseries.R |only timetk-0.1.3/timetk/R/tk_index.R |only timetk-0.1.3/timetk/R/tk_make_timeseries.R |only timetk-0.1.3/timetk/R/tk_tbl.R |only timetk-0.1.3/timetk/R/tk_ts.R |only timetk-0.1.3/timetk/R/tk_xts.R |only timetk-0.1.3/timetk/R/tk_zoo.R |only timetk-0.1.3/timetk/R/tk_zooreg.R |only timetk-0.1.3/timetk/inst/doc/TK00_Time_Series_Coercion.R |only timetk-0.1.3/timetk/inst/doc/TK00_Time_Series_Coercion.Rmd |only timetk-0.1.3/timetk/inst/doc/TK00_Time_Series_Coercion.html |only timetk-0.1.3/timetk/inst/doc/TK01_Working_With_Time_Series_Index.R |only timetk-0.1.3/timetk/inst/doc/TK01_Working_With_Time_Series_Index.Rmd |only timetk-0.1.3/timetk/inst/doc/TK01_Working_With_Time_Series_Index.html |only timetk-0.1.3/timetk/inst/doc/TK02_Making_A_Future_Time_Series_Index.R |only timetk-0.1.3/timetk/inst/doc/TK02_Making_A_Future_Time_Series_Index.Rmd |only timetk-0.1.3/timetk/inst/doc/TK02_Making_A_Future_Time_Series_Index.html |only timetk-0.1.3/timetk/vignettes/TK00_Time_Series_Coercion.Rmd |only timetk-0.1.3/timetk/vignettes/TK01_Working_With_Time_Series_Index.Rmd |only timetk-0.1.3/timetk/vignettes/TK02_Making_A_Future_Time_Series_Index.Rmd |only timetk-0.1.3/timetk/vignettes/day.csv |only timetk-1.0.0/timetk/DESCRIPTION | 42 timetk-1.0.0/timetk/MD5 | 217 +++- timetk-1.0.0/timetk/NAMESPACE | 176 +++ timetk-1.0.0/timetk/NEWS.md | 132 ++ timetk-1.0.0/timetk/R/00_global_vars.R |only timetk-1.0.0/timetk/R/augment-tk_augment_differences.R |only timetk-1.0.0/timetk/R/augment-tk_augment_fourier.R |only timetk-1.0.0/timetk/R/augment-tk_augment_holiday_signature.R |only timetk-1.0.0/timetk/R/augment-tk_augment_lags.R |only timetk-1.0.0/timetk/R/augment-tk_augment_roll_apply.R |only timetk-1.0.0/timetk/R/augment-tk_augment_timeseries.R |only timetk-1.0.0/timetk/R/coersion-tk_tbl.R |only timetk-1.0.0/timetk/R/coersion-tk_ts.R |only timetk-1.0.0/timetk/R/coersion-tk_xts.R |only timetk-1.0.0/timetk/R/coersion-tk_zoo.R |only timetk-1.0.0/timetk/R/coersion-tk_zooreg.R |only timetk-1.0.0/timetk/R/data-bike_sharing.R |only timetk-1.0.0/timetk/R/data-m4_daily.R |only timetk-1.0.0/timetk/R/data-m4_hourly.R |only timetk-1.0.0/timetk/R/data-m4_monthly.R |only timetk-1.0.0/timetk/R/data-m4_quarterly.R |only timetk-1.0.0/timetk/R/data-m4_weekly.R |only timetk-1.0.0/timetk/R/data-m4_yearly.R |only timetk-1.0.0/timetk/R/data-taylor_30_min.R |only timetk-1.0.0/timetk/R/data-walmart_sales_weekly.R |only timetk-1.0.0/timetk/R/data-wikipedia_traffic_daily.R |only timetk-1.0.0/timetk/R/diagnostics-tk_acf_diagnostics.R |only timetk-1.0.0/timetk/R/diagnostics-tk_seasonal_diagnostics.R |only timetk-1.0.0/timetk/R/diagnostics-tk_stl_diagnostics.R |only timetk-1.0.0/timetk/R/diagnostics-tk_summary_diagnostics.R |only timetk-1.0.0/timetk/R/diagnostics-tk_time_series_cv_plan.R |only timetk-1.0.0/timetk/R/dplyr-add_time.R |only timetk-1.0.0/timetk/R/dplyr-between_time.R |only timetk-1.0.0/timetk/R/dplyr-filter_by_time.R |only timetk-1.0.0/timetk/R/dplyr-pad_by_time.R |only timetk-1.0.0/timetk/R/dplyr-slidify.R |only timetk-1.0.0/timetk/R/dplyr-summarise_by_time.R |only timetk-1.0.0/timetk/R/get-tk_get_frequency.R |only timetk-1.0.0/timetk/R/get-tk_get_holiday_signature.R |only timetk-1.0.0/timetk/R/get-tk_get_time_scale_template.R |only timetk-1.0.0/timetk/R/get-tk_get_timeseries.R |only timetk-1.0.0/timetk/R/index-tk_index.R |only timetk-1.0.0/timetk/R/make-tk_make_holiday_sequences.R |only timetk-1.0.0/timetk/R/make-tk_make_timeseries.R |only timetk-1.0.0/timetk/R/make-tk_make_timeseries_future.R |only timetk-1.0.0/timetk/R/plot-acf_diagnostics.R |only timetk-1.0.0/timetk/R/plot-seasonal_diagnostics.R |only timetk-1.0.0/timetk/R/plot-stl_diagnostics.R |only timetk-1.0.0/timetk/R/plot-time_series.R |only timetk-1.0.0/timetk/R/plot-time_series_cv_plan.R |only timetk-1.0.0/timetk/R/recipes-step_box_cox.R |only timetk-1.0.0/timetk/R/recipes-step_diff.R |only timetk-1.0.0/timetk/R/recipes-step_fourier.R |only timetk-1.0.0/timetk/R/recipes-step_holiday_signature.R |only timetk-1.0.0/timetk/R/recipes-step_impute_ts.R |only timetk-1.0.0/timetk/R/recipes-step_roll_apply.R |only timetk-1.0.0/timetk/R/recipes-step_smooth.R |only timetk-1.0.0/timetk/R/recipes-step_timeseries_signature.R | 23 timetk-1.0.0/timetk/R/rsample-time_series_cv.R |only timetk-1.0.0/timetk/R/tidyquant-theme-compat.R |only timetk-1.0.0/timetk/R/utils-dates.R | 56 + timetk-1.0.0/timetk/R/utils-parse-time.R |only timetk-1.0.0/timetk/R/utils-parse_period.R |only timetk-1.0.0/timetk/R/utils-tidy-eval.R | 6 timetk-1.0.0/timetk/R/vec-box_cox.R |only timetk-1.0.0/timetk/R/vec-diff.R |only timetk-1.0.0/timetk/R/vec-fourier.R |only timetk-1.0.0/timetk/R/vec-impute_ts.R |only timetk-1.0.0/timetk/R/vec-lag.R |only timetk-1.0.0/timetk/R/vec-roll-apply.R |only timetk-1.0.0/timetk/R/vec-smooth.R |only timetk-1.0.0/timetk/R/zzz.R |only timetk-1.0.0/timetk/README.md | 333 ++---- timetk-1.0.0/timetk/build/vignette.rds |binary timetk-1.0.0/timetk/data |only timetk-1.0.0/timetk/inst/doc/TK03_Forecasting_Using_Time_Series_Signature.R | 20 timetk-1.0.0/timetk/inst/doc/TK03_Forecasting_Using_Time_Series_Signature.Rmd | 46 timetk-1.0.0/timetk/inst/doc/TK03_Forecasting_Using_Time_Series_Signature.html | 490 +++++----- timetk-1.0.0/timetk/inst/doc/TK04_Plotting_Time_Series.R |only timetk-1.0.0/timetk/inst/doc/TK04_Plotting_Time_Series.Rmd |only timetk-1.0.0/timetk/inst/doc/TK04_Plotting_Time_Series.html |only timetk-1.0.0/timetk/inst/doc/TK05_Plotting_Seasonality_and_Correlation.R |only timetk-1.0.0/timetk/inst/doc/TK05_Plotting_Seasonality_and_Correlation.Rmd |only timetk-1.0.0/timetk/inst/doc/TK05_Plotting_Seasonality_and_Correlation.html |only timetk-1.0.0/timetk/inst/doc/TK07_Time_Series_Data_Wrangling.R |only timetk-1.0.0/timetk/inst/doc/TK07_Time_Series_Data_Wrangling.Rmd |only timetk-1.0.0/timetk/inst/doc/TK07_Time_Series_Data_Wrangling.html |only timetk-1.0.0/timetk/man/between_time.Rd |only timetk-1.0.0/timetk/man/bike_sharing_daily.Rd |only timetk-1.0.0/timetk/man/box_cox_vec.Rd |only timetk-1.0.0/timetk/man/diff_vec.Rd |only timetk-1.0.0/timetk/man/figures/README-unnamed-chunk-3-1.png |only timetk-1.0.0/timetk/man/figures/README-unnamed-chunk-4-1.png |only timetk-1.0.0/timetk/man/figures/README-unnamed-chunk-5-1.png |only timetk-1.0.0/timetk/man/filter_by_time.Rd |only timetk-1.0.0/timetk/man/fourier_vec.Rd |only timetk-1.0.0/timetk/man/impute_ts_vec.Rd |only timetk-1.0.0/timetk/man/lag_vec.Rd |only timetk-1.0.0/timetk/man/m4_daily.Rd |only timetk-1.0.0/timetk/man/m4_hourly.Rd |only timetk-1.0.0/timetk/man/m4_monthly.Rd |only timetk-1.0.0/timetk/man/m4_quarterly.Rd |only timetk-1.0.0/timetk/man/m4_weekly.Rd |only timetk-1.0.0/timetk/man/m4_yearly.Rd |only timetk-1.0.0/timetk/man/pad_by_time.Rd |only timetk-1.0.0/timetk/man/plot_acf_diagnostics.Rd |only timetk-1.0.0/timetk/man/plot_seasonal_diagnostics.Rd |only timetk-1.0.0/timetk/man/plot_stl_diagnostics.Rd |only timetk-1.0.0/timetk/man/plot_time_series.Rd |only timetk-1.0.0/timetk/man/plot_time_series_cv_plan.Rd |only timetk-1.0.0/timetk/man/roll_apply_vec.Rd |only timetk-1.0.0/timetk/man/slidify.Rd |only timetk-1.0.0/timetk/man/smooth_vec.Rd |only timetk-1.0.0/timetk/man/step_box_cox.Rd |only timetk-1.0.0/timetk/man/step_diff.Rd |only timetk-1.0.0/timetk/man/step_fourier.Rd |only timetk-1.0.0/timetk/man/step_holiday_signature.Rd |only timetk-1.0.0/timetk/man/step_impute_ts.Rd |only timetk-1.0.0/timetk/man/step_roll_apply.Rd |only timetk-1.0.0/timetk/man/step_smooth.Rd |only timetk-1.0.0/timetk/man/step_timeseries_signature.Rd | 26 timetk-1.0.0/timetk/man/summarise_by_time.Rd |only timetk-1.0.0/timetk/man/taylor_30_min.Rd |only timetk-1.0.0/timetk/man/tidyeval.Rd | 1 timetk-1.0.0/timetk/man/time_arithmetic.Rd |only timetk-1.0.0/timetk/man/time_series_cv.Rd |only timetk-1.0.0/timetk/man/timetk_internal.Rd | 7 timetk-1.0.0/timetk/man/tk_acf_diagnostics.Rd |only timetk-1.0.0/timetk/man/tk_augment_differences.Rd |only timetk-1.0.0/timetk/man/tk_augment_fourier.Rd |only timetk-1.0.0/timetk/man/tk_augment_holiday.Rd |only timetk-1.0.0/timetk/man/tk_augment_lags.Rd |only timetk-1.0.0/timetk/man/tk_augment_roll_apply.Rd |only timetk-1.0.0/timetk/man/tk_augment_timeseries.Rd | 49 - timetk-1.0.0/timetk/man/tk_get_frequency.Rd |only timetk-1.0.0/timetk/man/tk_get_holiday.Rd |only timetk-1.0.0/timetk/man/tk_get_timeseries.Rd | 6 timetk-1.0.0/timetk/man/tk_index.Rd | 2 timetk-1.0.0/timetk/man/tk_make_future_timeseries.Rd | 121 +- timetk-1.0.0/timetk/man/tk_make_holiday_sequence.Rd |only timetk-1.0.0/timetk/man/tk_make_timeseries.Rd |only timetk-1.0.0/timetk/man/tk_seasonal_diagnostics.Rd |only timetk-1.0.0/timetk/man/tk_stl_diagnostics.Rd |only timetk-1.0.0/timetk/man/tk_summary_diagnostics.Rd |only timetk-1.0.0/timetk/man/tk_tbl.Rd | 2 timetk-1.0.0/timetk/man/tk_time_scale_template.Rd |only timetk-1.0.0/timetk/man/tk_time_series_cv_plan.Rd |only timetk-1.0.0/timetk/man/tk_ts.Rd | 2 timetk-1.0.0/timetk/man/tk_xts.Rd | 2 timetk-1.0.0/timetk/man/tk_zoo.Rd | 2 timetk-1.0.0/timetk/man/tk_zooreg.Rd | 2 timetk-1.0.0/timetk/man/walmart_sales_weekly.Rd |only timetk-1.0.0/timetk/man/wikipedia_traffic_daily.Rd |only timetk-1.0.0/timetk/vignettes/TK03_Forecasting_Using_Time_Series_Signature.Rmd | 46 timetk-1.0.0/timetk/vignettes/TK04_Plotting_Time_Series.Rmd |only timetk-1.0.0/timetk/vignettes/TK05_Plotting_Seasonality_and_Correlation.Rmd |only timetk-1.0.0/timetk/vignettes/TK07_Time_Series_Data_Wrangling.Rmd |only timetk-1.0.0/timetk/vignettes/temp_archive |only timetk-1.0.0/timetk/vignettes/time_series_course.jpg |only 182 files changed, 1191 insertions(+), 618 deletions(-)
Title: Quantitative Analysis and Visualization of LUCC
Description: Tools for the analysis of land use and cover (LUC) time series. It
includes support for loading spatiotemporal raster data and synthesized
spatial plotting. Several LUC change (LUCC) metrics in regular or irregular
time intervals can be extracted and visualized through one- and multistep
sankey and chord diagrams. A complete intensity analysis according to
Aldwaik and Pontius (2012) <doi:10.1016/j.landurbplan.2012.02.010> is
implemented, including tools for the generation of standardized multilevel
output graphics.
Author: Reginal Exavier [aut, cre] (<https://orcid.org/0000-0002-5237-523X>),
Peter Zeilhofer [aut]
Maintainer: Reginal Exavier <reginalexavier@rocketmail.com>
Diff between OpenLand versions 1.0.0 dated 2020-03-23 and 1.0.1 dated 2020-04-19
DESCRIPTION | 8 MD5 | 71 +- NAMESPACE | 4 NEWS.md |only R/contingencyTable.R | 4 R/generalfunctions.R | 5 R/otherplots.R | 8 R/plotMethods.R | 17 README.md | 14 build/partial.rdb |binary inst/doc/openland_vignette.R | 18 inst/doc/openland_vignette.Rmd | 18 inst/doc/openland_vignette.html | 918 ++++++++++++++++----------------- man/Category-class.Rd | 172 +++--- man/Interval-class.Rd | 60 +- man/OpenLand-package.Rd | 60 +- man/SL_2002_2014.Rd | 114 ++-- man/Transition-class.Rd | 202 +++---- man/acc_changes.Rd | 64 +- man/acessor.Rd | 58 +- man/barplotLand.Rd | 132 ++-- man/chordDiagramLand.Rd | 140 ++--- man/contingencyTable.Rd | 174 +++--- man/dot-demo_landscape.Rd | 122 ++-- man/dot-input_rasters.Rd | 84 +-- man/figures/README-cat_level-1.png |binary man/figures/README-chordDiagram-1.png |binary man/figures/README-ng_plot-1.png |binary man/intensityAnalysis.Rd | 216 +++---- man/netgrossplot.Rd | 136 ++-- man/plot-methods.Rd | 184 +++--- man/sankeyLand.Rd | 100 +-- man/summary_dir.Rd | 64 +- man/summary_map.Rd | 58 +- tests/testthat/test_generalfunctions.R | 26 tests/testthat/test_inputrasters.R | 30 - vignettes/openland_vignette.Rmd | 18 37 files changed, 1664 insertions(+), 1635 deletions(-)
Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci, Silvia Pandolfi, Fulvia Pennoni, Alessio Farcomeni, Alessio Serafini
Maintainer: Francesco Bartolucci <bart@stat.unipg.it>
Diff between LMest versions 2.6.0 dated 2020-01-20 and 2.6.1 dated 2020-04-19
DESCRIPTION | 8 +- MD5 | 26 ++++----- NAMESPACE | 1 R/lmbasic.cont.MISS.R |only R/lmbasic.cont.R | 12 ---- R/lmest.R | 9 ++- R/lmestCont.R | 131 +++++++++++++++++++++------------------------- R/lmestContMISS.R |only R/lmestMc.R | 3 - R/lmestMixed.R | 2 man/LMbasic-class.Rd | 1 man/LMbasiccont-class.Rd | 1 man/LMlatent-class.Rd | 1 man/LMlatentcont-class.Rd | 1 man/LMmanifest-class.Rd | 1 15 files changed, 99 insertions(+), 98 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.12 dated 2020-01-09 and 1.5.15 dated 2020-04-19
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 3 ++- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Parallel Runs of Reverse Depends
Description: Reverse depends for a given package are queued such that multiple
workers can run the tests in parallel.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between prrd versions 0.0.2 dated 2018-01-25 and 0.0.3 dated 2020-04-19
ChangeLog | 266 ++++++++++++++++++++++++++---------------- DESCRIPTION | 13 +- MD5 | 36 +++-- NAMESPACE | 3 R/db.R | 11 + R/dequeue.R | 9 - R/enqueue.R | 18 ++ R/summarise.R | 110 ++++++++++++++++- README.md | 45 ++++--- build/partial.rdb |binary inst/NEWS.Rd | 16 ++ inst/scripts/dequeueDepends.r |only inst/scripts/dequeueJobs.r | 8 - inst/scripts/enqueueDepends.r |only inst/scripts/enqueueJobs.r | 8 - inst/scripts/summariseJobs.r | 8 - man/dequeueJobs.Rd | 4 man/enqueueJobs.Rd | 2 man/getDatabaseConnection.Rd | 3 man/summariseQueue.Rd | 10 + 20 files changed, 409 insertions(+), 161 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-13 1.0.4
2018-01-23 1.0.3
2017-11-04 1.0.2
2017-06-27 1.0.1
2017-05-25 1.0.0
2017-01-18 0.2.0
2016-08-15 0.1.0
Title: Wizardry Code Offensive Programming
Description: Allows to turn standard R code into offensive programming code.
Provides code instrumentation to ease this change and tools to assist and
accelerate code production and tuning while using offensive programming code
technics.
Should improve code robustness and quality. Function calls can be easily
verified on-demand or in batch mode to assess parameter types and length
conformities.
Should improve coders productivity as offensive programming reduces the code
size due to reduced number of controls all along the call chain.
Should speed up processing as many checks will be reduced to one single check.
Author: Fabien Gelineau <neonira@gmail.com>
Maintainer: Fabien Gelineau <neonira@gmail.com>
Diff between wyz.code.offensiveProgramming versions 1.1.17 dated 2020-02-02 and 1.1.18 dated 2020-04-19
DESCRIPTION | 23 ++++-- MD5 | 88 +++++++++++++------------- build/partial.rdb |binary inst/doc/release.Rmd | 21 +++++- inst/doc/release.html | 69 +++++++++++--------- man/EvaluationMode.Rd | 7 +- man/FunctionParameterName.Rd | 12 ++- man/FunctionParameterTypeFactory.Rd | 8 +- man/TestCaseDefinition.Rd | 20 ++--- man/defineEvaluationModes.Rd | 4 - man/defineFunctionReturnTypesParameterName.Rd | 2 man/defineTestCaseDefinitionsParameterName.Rd | 5 - man/exploreObjectNamesVerification.Rd | 13 ++- man/findFilesInPackage.Rd | 7 +- man/getEllipsisName.Rd | 4 - man/getObjectClassKind.Rd | 13 ++- man/getObjectClassNames.Rd | 18 ++--- man/getObjectFunctionArgumentNames.Rd | 14 ++-- man/getObjectFunctionNames.Rd | 14 ++-- man/identifyOPInstrumentationLevel.Rd | 17 ++--- man/isAuditable.Rd | 14 +--- man/matchFunctionSignature.Rd | 10 +- man/opInformation.Rd | 23 ++++-- man/print.EvaluationMode.Rd | 6 - man/print.FunctionParameterName.Rd | 4 - man/print.TestCaseDefinition.Rd | 4 - man/retrieveFactory.Rd | 9 +- man/retrieveFunctionArguments.Rd | 9 +- man/retrieveFunctionArgumentsNames.Rd | 9 +- man/retrieveFunctionReturnTypes.Rd | 15 ++-- man/retrievePackageFunctionNames.Rd | 6 - man/retrieveTestCaseDefinitions.Rd | 18 ++--- man/runFunction.Rd | 21 +++--- man/runTestCase.Rd | 22 ++---- man/runTransientFunction.Rd | 28 ++++---- man/verifyClassName.Rd | 18 ++--- man/verifyFunctionArguments.Rd | 20 ++--- man/verifyFunctionName.Rd | 8 +- man/verifyFunctionReturnTypesDefinition.Rd | 24 +++---- man/verifyObjectNames.Rd | 38 +++++------ man/verifyTestCaseDefinitions.Rd | 24 +++---- tests/testthat/test_retrieveFactory.R | 1 vignettes/release.Rmd | 21 +++++- vignettes/style.css | 50 +++++++------- vignettes/vignette-common.R | 26 +++---- 45 files changed, 417 insertions(+), 370 deletions(-)
More information about wyz.code.offensiveProgramming at CRAN
Permanent link
Title: CCR, Entropy-Based Correlation Estimates & Dynamic Beta
Description: Contains performance analysis metrics of track records including entropy-based
correlation and dynamic beta based on the Kalman filter. The normalized sample entropy method
has been implemented which produces accurate entropy estimation even on smaller datasets while for
the dynamic beta calculation the Kalman filter methodology has been utilized.
On a separate stream, trades from the five major assets classes and also
functionality to use pricing curves, rating tables, CSAs and add-on tables. The
implementation follows an object oriented logic whereby each trade inherits from
more abstract classes while also the curves/tables are objects. There is a lot
of functionality focusing on the counterparty credit risk calculations however
the package can be used for trading applications in general.
Author: Tasos Grivas
Maintainer: Tasos Grivas <info@openriskcalculator.com>
Diff between Trading versions 1.2 dated 2019-01-12 and 2.0 dated 2020-04-19
Trading-1.2/Trading/man/EquityOption.Rd |only Trading-1.2/Trading/man/IRDFuture.Rd |only Trading-2.0/Trading/DESCRIPTION | 45 ++--- Trading-2.0/Trading/MD5 | 69 ++++--- Trading-2.0/Trading/NAMESPACE | 23 ++ Trading-2.0/Trading/R/AngularDistance.R |only Trading-2.0/Trading/R/Chebyshev_distance.R |only Trading-2.0/Trading/R/CrossSampleEntropy.R |only Trading-2.0/Trading/R/DynamicBeta.R |only Trading-2.0/Trading/R/IRD.R | 6 Trading-2.0/Trading/R/InformationAdjustedBeta.R |only Trading-2.0/Trading/R/InformationAdjustedCorr.R |only Trading-2.0/Trading/R/NormXASampEn.R |only Trading-2.0/Trading/R/SampleEntropy.R |only Trading-2.0/Trading/R/VariationOfInformation.R |only Trading-2.0/Trading/inst/extdata/example_track_record.csv |only Trading-2.0/Trading/man/AngularDistance.Rd |only Trading-2.0/Trading/man/Bond-class.Rd | 92 +++++----- Trading-2.0/Trading/man/BondFuture-class.Rd | 94 +++++----- Trading-2.0/Trading/man/CDOTranche-class.Rd | 72 ++++---- Trading-2.0/Trading/man/CSA-class.Rd | 126 +++++++------- Trading-2.0/Trading/man/Chebyshev_distance.Rd |only Trading-2.0/Trading/man/Collateral-class.Rd | 84 ++++----- Trading-2.0/Trading/man/CommSwap-class.Rd | 40 ++-- Trading-2.0/Trading/man/Commodity-class.Rd | 78 ++++---- Trading-2.0/Trading/man/CommodityForward-class.Rd | 82 ++++----- Trading-2.0/Trading/man/CreditIndex-class.Rd | 64 +++---- Trading-2.0/Trading/man/CreditSingle-class.Rd | 78 ++++---- Trading-2.0/Trading/man/CrossSampleEntropy.Rd |only Trading-2.0/Trading/man/Curve-class.Rd | 68 +++---- Trading-2.0/Trading/man/DynamicBeta.Rd |only Trading-2.0/Trading/man/Equity-class.Rd | 72 ++++---- Trading-2.0/Trading/man/EquityIndexFuture-class.Rd | 70 +++---- Trading-2.0/Trading/man/EquityOption-class.Rd |only Trading-2.0/Trading/man/FXSwap-class.Rd | 78 ++++---- Trading-2.0/Trading/man/GetTradeDetails.Rd | 53 ++--- Trading-2.0/Trading/man/HashTable-class.Rd | 68 +++---- Trading-2.0/Trading/man/IRDFuture-class.Rd |only Trading-2.0/Trading/man/IRDSwap-class.Rd | 62 +++--- Trading-2.0/Trading/man/IRDSwapVol-class.Rd | 25 +- Trading-2.0/Trading/man/IRDSwaption-class.Rd | 90 +++++----- Trading-2.0/Trading/man/InformationAdjustedBeta.Rd |only Trading-2.0/Trading/man/InformationAdjustedCorr.Rd |only Trading-2.0/Trading/man/NormXASampEn.Rd |only Trading-2.0/Trading/man/ParseTrades.Rd | 55 +++--- Trading-2.0/Trading/man/SampleEntropy.Rd |only Trading-2.0/Trading/man/VariationOfInformation.Rd |only 47 files changed, 816 insertions(+), 778 deletions(-)
Title: Build and Raytrace 3D Scenes
Description: Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, line segments, cylinders, ellipsoids, and 3D models in the 'Wavefront' OBJ file format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.
Author: Tyler Morgan-Wall [aut, cph, cre]
(<https://orcid.org/0000-0002-3131-3814>),
Syoyo Fujita [ctb, cph],
Melissa O'Neill [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayrender versions 0.6.0 dated 2020-02-08 and 0.9.1 dated 2020-04-19
DESCRIPTION | 9 MD5 | 79 +++--- NAMESPACE | 1 R/RcppExports.R | 8 R/convert_color.R | 10 R/flipfunctions.R | 4 R/generate_cornell.R | 21 - R/materials.R | 92 +++++-- R/objects.R | 596 +++++++++++++++++++++++++++++++++++++++++++--- R/pig.R | 3 R/plot_map.R | 8 R/render_scene.R | 245 +++++++++++++++--- man/convert_color.Rd | 2 man/cube.Rd | 6 man/dielectric.Rd | 61 ++++ man/diffuse.Rd | 7 man/ellipsoid.Rd | 6 man/extruded_polygon.Rd |only man/generate_cornell.Rd | 10 man/metal.Rd | 9 man/obj_model.Rd | 10 man/pig.Rd | 3 man/render_scene.Rd | 35 ++ man/triangle.Rd | 6 src/RcppExports.cpp | 51 ++- src/adaptivesampler.h |only src/box.h | 16 - src/buildscene.h | 244 +++++++++++------- src/cylinder.h | 53 +++- src/disk.h | 22 + src/ellipsoid.h | 45 +++ src/interaction.h |only src/material.h | 133 +++++++--- src/mathinline.h | 22 + src/ray.h | 29 +- src/render_scene_rcpp.cpp | 539 +++++++++++++++++++++++++++++------------ src/sphere.h | 80 +++++- src/texture.h | 45 +++ src/triangle.h | 31 +- src/trimesh.h | 215 ++++++++++++++-- src/vec3.h | 53 +++- src/xyrect.h | 98 ++++++- 42 files changed, 2313 insertions(+), 594 deletions(-)
Title: Find the Pole of Inaccessibility (Visual Center) of a Polygon
Description: A wrapper around the C++ library 'polylabel' from 'Mapbox',
providing an efficient routine for finding the approximate pole of
inaccessibility of a polygon, which usually serves as an excellent candidate
for labeling of a polygon.
Author: Johan Larsson [aut, cre] (<https://orcid.org/0000-0002-4029-5945>),
Kent Johnson [ctb],
Mapbox [cph] (polylabel, variant, and geometry libraries)
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between polylabelr versions 0.1.0 dated 2018-11-02 and 0.2.0 dated 2020-04-19
DESCRIPTION | 37 +++++++++++++++++++------------ MD5 | 22 ++++++++++-------- NAMESPACE | 11 +++++++++ NEWS.md | 10 ++++++++ R/poi.R | 19 ++++++++++++++- R/poi_sf.R |only README.md | 21 +++++++++++++++-- inst/CITATION | 8 ++++-- inst/WORDLIST | 8 ++---- man/figures/README-unnamed-chunk-1-1.png |binary man/poi.Rd | 13 +++++++++- man/polylabelr-package.Rd | 14 ++++++----- tests/testthat/test-poi-sf.R |only 13 files changed, 119 insertions(+), 44 deletions(-)
Title: Read RSS/Atom Feeds from R
Description: Retrieve data from RSS/Atom feeds.
Author: Andrew Collier [aut, cre]
Maintainer: Andrew Collier <andrew@exegetic.biz>
Diff between feedeR versions 0.0.7 dated 2016-10-25 and 0.0.8 dated 2020-04-19
DESCRIPTION | 16 ++-- MD5 | 33 ++++++-- NAMESPACE | 6 + R/datetime.R |only R/feeder.R |only R/parse-atom.R |only R/parse-rdf.R |only R/parse-rss.R |only R/read.R | 166 ++++++++---------------------------------- R/type.R |only R/util.R |only README.md | 38 ++++++--- inst |only man/feed.extract.Rd | 5 - man/figures |only man/parse.rdf.Rd | 3 tests/testthat/setup-files.R |only tests/testthat/test-feeds.txt |only tests/testthat/test_atom.R | 17 +++- tests/testthat/test_rdf.R |only tests/testthat/test_rss.R | 8 +- tests/testthat/test_util.R | 10 ++ 22 files changed, 125 insertions(+), 177 deletions(-)
Title: Get City Bike Data from Norway
Description: Functions to get and download city bike data from
the website and API service of each city bike service in Norway. The
package aims to reduce time spent on getting Norwegian city bike data,
and lower barriers to start analyzing it. The data is retrieved from
Oslo City Bike, Bergen City Bike, and Trondheim City Bike. The data is
made available under NLOD 2.0 <https://data.norge.no/nlod/en/2.0>.
Author: Iman Ghayoornia [aut, cre]
Maintainer: Iman Ghayoornia <ghayoornia.iman@gmail.com>
Diff between bysykkel versions 0.2.3 dated 2019-05-16 and 0.3.1 dated 2020-04-19
DESCRIPTION | 27 +- LICENSE | 4 MD5 | 70 +++--- NAMESPACE | 36 +-- NEWS.md | 151 ++++++++------ R/bysykkel_control_api_input.R | 228 +++++++++++----------- R/bysykkel_control_date.R | 142 ++++++------- R/bysykkel_control_input.R | 160 +++++++-------- R/bysykkel_control_legacy_oslo.R | 48 ++-- R/dl_trips_data.R | 173 ++++++++-------- R/dl_trips_data_bergen.R | 31 +-- R/dl_trips_data_oslo.R | 73 +++---- R/dl_trips_data_oslow.R | 31 +-- R/dl_trips_data_trondheim.R | 32 +-- R/fread_trips_data.R | 184 ++++++++---------- R/fread_trips_data_oslo.R | 74 +++---- R/fread_trips_data_oslow.R | 22 +- R/freads_trips_data_bergen.R | 22 +- R/freads_trips_data_trondheim.R | 24 +- R/get_api_data.R | 187 +++++++++--------- R/get_api_data_bergen.R | 180 +++++++++-------- R/get_api_data_oslo.R | 180 +++++++++-------- R/get_api_data_oslow.R | 180 +++++++++-------- R/get_api_data_trondheim.R | 180 +++++++++-------- R/read_trips_data.R | 156 +++++++-------- R/read_trips_data_bergen.R | 32 +-- R/read_trips_data_oslo.R | 86 ++++---- R/read_trips_data_oslow.R | 32 +-- R/read_trips_data_trondheim.R | 32 +-- README.md | 398 +++++++++++++++++++-------------------- man/dl_trips_data.Rd | 110 +++++----- man/fread_trips_data.Rd | 109 +++++----- man/get_api_data.Rd | 138 ++++++------- man/read_trips_data.Rd | 101 ++++----- tests |only 35 files changed, 1830 insertions(+), 1803 deletions(-)
Title: Call Google's 'Natural Language' API, 'Cloud Translation' API,
'Cloud Speech' API and 'Cloud Text-to-Speech' API
Description: Call 'Google Cloud' machine learning APIs for text and speech tasks.
Call the 'Cloud Translation' API <https://cloud.google.com/translate/> for detection
and translation of text, the 'Natural Language' API <https://cloud.google.com/natural-language/> to
analyse text for sentiment, entities or syntax, the 'Cloud Speech' API
<https://cloud.google.com/speech/> to transcribe sound files to text and
the 'Cloud Text-to-Speech' API <https://cloud.google.com/text-to-speech/> to turn text
into sound files.
Author: Mark Edmondson [aut, cre],
John Muschelli [ctb],
Neal Richardson [rev] (Neal reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/127>),
Julia Gustavsen [rev] (Julia reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/127>)
Maintainer: Mark Edmondson <r@sunholo.com>
Diff between googleLanguageR versions 0.2.0 dated 2018-06-21 and 0.3.0 dated 2020-04-19
googleLanguageR-0.2.0/googleLanguageR/tests/language.googleapis.com |only googleLanguageR-0.2.0/googleLanguageR/tests/speech.googleapis.com |only googleLanguageR-0.2.0/googleLanguageR/tests/testthat/test_integration.R |only googleLanguageR-0.2.0/googleLanguageR/tests/testthat/test_unit.R |only googleLanguageR-0.2.0/googleLanguageR/tests/texttospeech.googleapis.com |only googleLanguageR-0.2.0/googleLanguageR/tests/translation.googleapis.com |only googleLanguageR-0.3.0/googleLanguageR/DESCRIPTION | 21 googleLanguageR-0.3.0/googleLanguageR/MD5 | 90 - googleLanguageR-0.3.0/googleLanguageR/NAMESPACE | 2 googleLanguageR-0.3.0/googleLanguageR/NEWS.md | 11 googleLanguageR-0.3.0/googleLanguageR/R/auth.R | 23 googleLanguageR-0.3.0/googleLanguageR/R/natural-language.R | 53 - googleLanguageR-0.3.0/googleLanguageR/R/speech-to-text.R | 86 + googleLanguageR-0.3.0/googleLanguageR/R/text-to-speech.R | 48 googleLanguageR-0.3.0/googleLanguageR/R/translate.R | 11 googleLanguageR-0.3.0/googleLanguageR/R/utilities.R | 46 googleLanguageR-0.3.0/googleLanguageR/R/version.R | 13 googleLanguageR-0.3.0/googleLanguageR/README.md | 310 +++--- googleLanguageR-0.3.0/googleLanguageR/build/vignette.rds |binary googleLanguageR-0.3.0/googleLanguageR/inst/doc/nlp.html | 514 +++++++--- googleLanguageR-0.3.0/googleLanguageR/inst/doc/setup.html | 332 +++++- googleLanguageR-0.3.0/googleLanguageR/inst/doc/speech.Rmd | 31 googleLanguageR-0.3.0/googleLanguageR/inst/doc/speech.html | 450 ++++++-- googleLanguageR-0.3.0/googleLanguageR/inst/doc/text-to-speech.Rmd | 67 - googleLanguageR-0.3.0/googleLanguageR/inst/doc/text-to-speech.html | 447 ++++++-- googleLanguageR-0.3.0/googleLanguageR/inst/doc/translation.html | 360 +++++-- googleLanguageR-0.3.0/googleLanguageR/man/gl_auth.Rd | 11 googleLanguageR-0.3.0/googleLanguageR/man/gl_nlp.Rd | 13 googleLanguageR-0.3.0/googleLanguageR/man/gl_speech.Rd | 31 googleLanguageR-0.3.0/googleLanguageR/man/gl_speech_op.Rd | 2 googleLanguageR-0.3.0/googleLanguageR/man/gl_talk.Rd | 36 googleLanguageR-0.3.0/googleLanguageR/man/gl_talk_shiny.Rd | 40 googleLanguageR-0.3.0/googleLanguageR/man/gl_translate.Rd | 15 googleLanguageR-0.3.0/googleLanguageR/man/gl_translate_detect.Rd | 6 googleLanguageR-0.3.0/googleLanguageR/man/gl_translate_languages.Rd | 6 googleLanguageR-0.3.0/googleLanguageR/man/googleLanguageR.Rd | 1 googleLanguageR-0.3.0/googleLanguageR/tests/testthat.R | 2 googleLanguageR-0.3.0/googleLanguageR/tests/testthat/output.wav |binary googleLanguageR-0.3.0/googleLanguageR/tests/testthat/prep_tests.R | 24 googleLanguageR-0.3.0/googleLanguageR/tests/testthat/test_gl.R |only googleLanguageR-0.3.0/googleLanguageR/vignettes/speech.Rmd | 31 googleLanguageR-0.3.0/googleLanguageR/vignettes/text-to-speech.Rmd | 67 - 42 files changed, 2409 insertions(+), 791 deletions(-)
More information about googleLanguageR at CRAN
Permanent link
Title: Topic Models
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
Author: Bettina Grün [aut, cre] (<https://orcid.org/0000-0001-7265-4773>),
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
David M Blei [ctb, cph] (VEM estimation of LDA and CTM),
John D Lafferty [ctb, cph] (VEM estimation of CTM),
Xuan-Hieu Phan [ctb, cph] (MCMC estimation of LDA),
Makoto Matsumoto [ctb, cph] (Mersenne Twister RNG),
Takuji Nishimura [ctb, cph] (Mersenne Twister RNG),
Shawn Cokus [ctb] (Mersenne Twister RNG)
Maintainer: Bettina Grün <Bettina.Gruen@jku.at>
Diff between topicmodels versions 0.2-9 dated 2019-12-03 and 0.2-11 dated 2020-04-19
DESCRIPTION | 6 - MD5 | 50 +++++++-------- R/allclasses.R | 3 build/vignette.rds |binary data/AssociatedPress.rda |binary inst/NEWS.Rd | 15 ++++ inst/doc/topicmodels.pdf |binary src/cokus.c | 2 src/cokus.h | 1 src/ctm.c | 8 -- src/ctm.h | 1 src/gsl-wrappers.c | 95 ---------------------------- src/gsl-wrappers.h | 9 -- src/inference.c | 156 +++++++++-------------------------------------- src/inference.h | 9 -- src/lda-alpha.c | 8 -- src/lda-alpha.h | 4 - src/lda-inference.c | 84 ++++++++++++------------- src/lda-inference.h | 6 - src/lda-model.c | 2 src/rGibbslda.cpp | 2 src/rctm.c | 18 ++--- src/rlda.c | 48 ++++++++------ src/rlda.h | 10 --- src/utils.c | 14 ---- src/utils.h | 1 26 files changed, 168 insertions(+), 384 deletions(-)
Title: Item Analysis in Rasch Models
Description: Tools to assess model fit and identify misfitting items for Rasch models (RM) and partial credit models (PCM). Included are item fit statistics, item characteristic curves, item-restscore association, conditional likelihood ratio tests, assessment of measurement error, estimates of the reliability and test targeting as described in Christensen et al. (Eds.) (2013, ISBN:978-1-84821-222-0).
Author: Marianne Mueller [aut, cre],
Pedro Henrique Ribeiro Santiago [ctb]
Maintainer: Marianne Mueller <mllm@zhaw.ch>
Diff between iarm versions 0.3.0 dated 2019-12-04 and 0.4.1 dated 2020-04-19
DESCRIPTION | 21 +++++++++------- MD5 | 26 +++++++++++--------- NAMESPACE | 6 ++++ NEWS.md | 11 ++++++++ R/Gamma.R | 52 +++++++++++++++++++++++++++++------------ R/Item-Fit.R | 63 ++++++++++++++++++++++++++++++++++---------------- R/Plots.R |only R/Rasch-Model.R | 2 + man/ICCplot.Rd |only man/item_obsexp.Rd | 2 + man/item_restscore.Rd | 1 man/item_target.Rd | 2 + man/out_infit.Rd | 3 ++ man/partgam_DIF.Rd | 2 - man/partgam_LD.Rd | 8 ++++-- 15 files changed, 141 insertions(+), 58 deletions(-)
Title: Bibliographic Network Analysis
Description: Enables the user to build a citation network/graph from bibliographic data and, based on modularity and heterocitation metrics, assess the degree of awareness/cross-fertilization between two corpora/communities. This toolset is optimized for Scopus data.
Author: Christian Vincenot
Maintainer: Christian Vincenot <christian@vincenot.biz>
Diff between Diderot versions 0.12 dated 2017-11-06 and 0.13 dated 2020-04-19
DESCRIPTION | 8 MD5 | 50 +++--- R/Diderot.R | 42 ++--- man/Diderot-package.Rd | 4 man/MC_baseline_distribution.Rd | 3 man/build_graph.Rd | 3 man/compute_BC_ranking.Rd | 3 man/compute_Ji.Rd | 3 man/compute_Ji_ranking.Rd | 3 man/compute_citation_ranking.Rd | 3 man/compute_custom_modularity.Rd | 3 man/compute_modularity.Rd | 3 man/create_bibliography.Rd | 283 ++++++++++++++++------------------ man/get_date_from_doi.Rd | 3 man/get_reference_title.Rd | 3 man/heterocitation.Rd | 3 man/heterocitation_authors.Rd | 3 man/load_graph.Rd | 223 +++++++++++++------------- man/nb_refs.Rd | 3 man/plot_authors_count.Rd | 3 man/plot_heterocitation_timeseries.Rd | 3 man/plot_modularity_timeseries.Rd | 3 man/plot_publication_curve.Rd | 3 man/precompute_heterocitation.Rd | 3 man/save_graph.Rd | 209 ++++++++++++------------- man/significance_Dx.Rd | 3 26 files changed, 430 insertions(+), 446 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to
work with remote database tables as if they are in-memory data frames.
Basic features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Edgar Ruiz [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dbplyr versions 1.4.2 dated 2019-06-17 and 1.4.3 dated 2020-04-19
DESCRIPTION | 37 +-- LICENSE | 2 MD5 | 224 +++++++++++----------- NAMESPACE | 85 ++++++++ NEWS.md | 20 + R/backend-.R | 26 +- R/backend-access.R | 1 R/backend-athena.R |only R/backend-mssql.R | 25 +- R/backend-oracle.R | 1 R/backend-postgres.R | 7 R/backend-presto.R |only R/backend-teradata.R | 1 R/data-cache.R | 2 R/data-lahman.R | 37 +-- R/data-nycflights13.R | 21 +- R/dbplyr.R | 31 ++- R/escape.R | 36 ++- R/explain.R | 2 R/ident.R | 2 R/lazy-ops.R | 2 R/memdb.R | 6 R/progress.R |only R/schema.R | 1 R/sql-expr.R | 1 R/src-sql.R | 5 R/src_dbi.R | 77 +++---- R/tbl-lazy.R | 15 + R/tbl-sql.R | 5 R/test-frame.R | 10 R/translate-sql-clause.R | 3 R/translate-sql-window.R | 9 R/translate-sql.R | 6 R/verb-arrange.R | 3 R/verb-compute.R | 8 R/verb-copy-to.R | 2 R/verb-distinct.R | 1 R/verb-do.R | 17 - R/verb-filter.R | 1 R/verb-group_by.R | 15 + R/verb-head.R | 7 R/verb-joins.R | 12 - R/verb-mutate.R | 2 R/verb-pull.R | 1 R/verb-select.R | 2 R/verb-set-ops.R | 4 R/verb-summarise.R | 1 README.md | 12 - build/dbplyr.pdf |only build/vignette.rds |binary inst/doc/dbplyr.R | 26 +- inst/doc/dbplyr.html | 294 ++++++++++++++--------------- inst/doc/new-backend.R | 8 inst/doc/new-backend.html | 90 ++++---- inst/doc/reprex.R | 15 - inst/doc/reprex.Rmd | 3 inst/doc/reprex.html | 147 +++++++------- inst/doc/sql.R | 18 - inst/doc/sql.html | 162 ++++++++------- inst/doc/translation-function.R | 34 +-- inst/doc/translation-function.Rmd | 4 inst/doc/translation-function.html | 212 ++++++++++---------- inst/doc/translation-verb.R | 10 inst/doc/translation-verb.html | 88 ++++---- man/arrange.tbl_lazy.Rd | 9 man/collapse.tbl_sql.Rd | 14 - man/copy_to.src_sql.Rd | 15 + man/db_copy_to.Rd | 27 ++ man/dbplyr-package.Rd | 2 man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-soft-deprecated.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/in_schema.Rd | 1 man/join.tbl_sql.Rd | 127 +++++++++--- man/lahman.Rd | 7 man/memdb_frame.Rd | 14 - man/nycflights13.Rd | 2 man/partial_eval.Rd | 2 man/sql_build.Rd | 16 + man/sql_escape_logical.Rd | 6 man/sql_expr.Rd | 4 man/sql_variant.Rd | 10 man/src_dbi.Rd | 98 --------- man/src_sql.Rd | 2 man/tbl.src_dbi.Rd |only man/testing.Rd | 13 - man/translate_sql.Rd | 32 ++- man/win_over.Rd | 9 tests/testthat/helper-src.R | 27 +- tests/testthat/test-backend-mssql.R | 8 tests/testthat/test-backend-mysql.R | 4 tests/testthat/test-backend-postgres.R | 5 tests/testthat/test-backend-sqlite.R | 8 tests/testthat/test-escape.R | 8 tests/testthat/test-partial-eval.R | 2 tests/testthat/test-src_dbi.R | 2 tests/testthat/test-tbl-lazy.R | 4 tests/testthat/test-tbl-sql.R | 62 +----- tests/testthat/test-translate-sql-window.R | 15 + tests/testthat/test-verb-arrange.R | 9 tests/testthat/test-verb-compute.R | 8 tests/testthat/test-verb-copy-to.R | 2 tests/testthat/test-verb-filter.R | 55 +---- tests/testthat/test-verb-group_by.R | 16 + tests/testthat/test-verb-head.R | 57 ++--- tests/testthat/test-verb-joins.R | 291 ++++++---------------------- tests/testthat/test-verb-mutate.R | 49 ++-- tests/testthat/test-verb-select.R | 6 tests/testthat/test-verb-set-ops.R | 17 + tests/testthat/test-verb-summarise.R | 2 vignettes/notes/_mysql-setup.Rmd | 6 vignettes/notes/_postgres-setup.Rmd | 4 vignettes/reprex.Rmd | 3 vignettes/translation-function.Rmd | 4 120 files changed, 1557 insertions(+), 1426 deletions(-)
Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression and classification models
and get relevant evaluation metrics in a tidy format. Validate the
best model on a test set and compare it to a baseline evaluation.
Alternatively, evaluate predictions from an external model. Currently
supports regression and classification (binary and multiclass).
Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R.,
& Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre],
Benjamin Hugh Zachariae [aut]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between cvms versions 1.0.0 dated 2020-04-14 and 1.0.1 dated 2020-04-19
DESCRIPTION | 21 ++++---- MD5 | 58 ++++++++++++------------ NEWS.md | 6 ++ R/evaluate.R | 36 ++++++++++++++ R/helpers.R | 1 R/plot_confusion_matrix.R | 34 +++++++++++--- build/cvms.pdf |binary build/vignette.rds |binary inst/doc/available_metrics.Rmd | 2 inst/doc/available_metrics.html | 4 - inst/doc/creating_a_confusion_matrix.Rmd | 2 inst/doc/creating_a_confusion_matrix.html | 4 - inst/doc/cross_validating_custom_functions.html | 8 +-- inst/doc/evaluate_by_id.Rmd | 2 inst/doc/evaluate_by_id.html | 4 - man/plot_confusion_matrix.Rd | 8 ++- tests/testthat/test_baseline.R | 13 +++++ tests/testthat/test_cross_validate.R | 28 +++++++---- tests/testthat/test_cross_validate_fn.R | 33 ++++++++++--- tests/testthat/test_evaluate.R | 15 ++++-- tests/testthat/test_helpers.R | 6 +- tests/testthat/test_most_challenging.R | 16 ++++++ tests/testthat/test_plotting_functions.R | 10 ++++ tests/testthat/test_select_definitions.R | 2 tests/testthat/test_select_metrics.R | 4 + tests/testthat/test_validate.R | 7 ++ tests/testthat/test_validate_fn.R | 7 ++ vignettes/available_metrics.Rmd | 2 vignettes/creating_a_confusion_matrix.Rmd | 2 vignettes/evaluate_by_id.Rmd | 2 30 files changed, 248 insertions(+), 89 deletions(-)
Title: Generalised Additive Point Process Models
Description: Methods for fitting point processes with parameters of generalised additive
model (GAM) form are provided. For an introduction to point processes see Cox, D.R &
Isham, V. (Point Processes, 1980, CRC Press), GAMs see Wood, S.N. (2017)
<doi:10.1201/9781315370279>, and the fitting approach see Wood, S.N., Pya, N. &
Safken, B. (2016) <doi:10.1080/01621459.2016.1180986>.
Author: Ben Youngman [aut, cre], Theo Economou [aut]
Maintainer: Ben Youngman <b.youngman@exeter.ac.uk>
Diff between ppgam versions 1.0.0 dated 2020-04-06 and 1.0.1 dated 2020-04-19
ppgam-1.0.0/ppgam/NEWS |only ppgam-1.0.1/ppgam/DESCRIPTION | 8 ++++---- ppgam-1.0.1/ppgam/MD5 | 6 +++--- ppgam-1.0.1/ppgam/NEWS.md |only ppgam-1.0.1/ppgam/R/ppgam.R | 8 ++++---- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Modelling and Analysis of Dynamic Computer Experiments
Description: Emulating and solving inverse problems for dynamic computer experiments.
It contains two major functionalities: (1) localized GP model for large-scale
dynamic computer experiments using the algorithm proposed by
Zhang et al. (2018) <arXiv:1611.09488>; (2) solving inverse problems
in dynamic computer experiments. The current version only supports 64-bit
version of R.
Author: Ru Zhang [aut, cre],
Chunfang Devon Lin [aut],
Pritam Ranjan [aut],
Robert B Gramacy [ctb],
Nicolas Devillard [ctb],
Jorge Nocedal [ctb],
Jose Luis Morales [ctb],
Ciyou Zhu [ctb],
Richard Byrd [ctb],
Peihuang Lu-Chen [ctb],
Berend Hasselman [ctb],
Jack Dongarra [ctb],
Jeremy Du Croz [ctb],
Sven Hammarling [ctb],
Richard Hanson [ctb],
University of Chicago [cph],
University of California [cph]
Maintainer: Ru Zhang <heavenmarshal@gmail.com>
Diff between DynamicGP versions 1.1-5 dated 2019-11-19 and 1.1-6 dated 2020-04-19
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- src/lbfgsb.f | 42 ++++++++++++++++++++++-------------------- src/mydtrmv.f | 1 + src/mydtrsv.f | 1 + src/sdblepr.f |only 6 files changed, 33 insertions(+), 28 deletions(-)
Title: Distance Between Phylogenetic Histories
Description: Geodesic distance between phylogenetic trees and
associated functions. The theoretical background of 'distory'
is published in Billera et al. (2001) "Geometry of the space of
phylogenetic trees." <doi:10.1006/aama.2001.0759>.
Author: John Chakerian [aut, cre], Susan Holmes [aut, cre]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Diff between distory versions 1.4.3 dated 2017-03-21 and 1.4.4 dated 2020-04-19
DESCRIPTION | 27 +++---- LICENSE |only MD5 | 29 ++++---- NAMESPACE | 11 ++- NEWS |only R/dist.multiPhylo.R | 34 ++++----- R/gromov.hyperbolicity.R | 4 - man/bethe.tree.Rd | 55 +++++---------- man/bin.multiPhylo.Rd | 52 +++++--------- man/dist.multiPhylo.Rd | 151 +++++++++++++++++++------------------------ man/distory-package.Rd | 56 +++++---------- man/gromov.hyperbolicity.Rd | 62 ++++++----------- man/mcmc.target.seq.Rd | 132 +++++++++++++++---------------------- man/orthant.boundary.tree.Rd | 56 +++++---------- man/phylo.diff.Rd | 102 +++++++++++------------------ man/position.leverage.Rd | 79 ++++++++-------------- src/distory.c |only 17 files changed, 345 insertions(+), 505 deletions(-)
Title: Computation of Risk-Based Portfolios
Description: Collection of functions designed to compute risk-based portfolios as described
in Ardia et al. (2017) <doi:10.1007/s10479-017-2474-7> and Ardia et al. (2017) <doi:10.21105/joss.00171>.
Author: David Ardia [aut, cre, cph] (<https://orcid.org/0000-0003-2823-782X>),
Kris Boudt [aut],
Jean-Philippe Gagnon-Fleury [aut]
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between RiskPortfolios versions 2.1.2 dated 2018-08-30 and 2.1.3 dated 2020-04-19
RiskPortfolios-2.1.2/RiskPortfolios/README.md |only RiskPortfolios-2.1.3/RiskPortfolios/COPYING | 680 ++-- RiskPortfolios-2.1.3/RiskPortfolios/DESCRIPTION | 18 RiskPortfolios-2.1.3/RiskPortfolios/MD5 | 51 RiskPortfolios-2.1.3/RiskPortfolios/NAMESPACE | 28 RiskPortfolios-2.1.3/RiskPortfolios/NEWS | 137 RiskPortfolios-2.1.3/RiskPortfolios/R/Industry_10.R | 18 RiskPortfolios-2.1.3/RiskPortfolios/R/RiskPortfolios.R | 156 - RiskPortfolios-2.1.3/RiskPortfolios/R/covEstimation.R | 1096 +++---- RiskPortfolios-2.1.3/RiskPortfolios/R/meanEstimation.R | 318 +- RiskPortfolios-2.1.3/RiskPortfolios/R/optimalPortfolio.R | 1394 +++++----- RiskPortfolios-2.1.3/RiskPortfolios/R/semidevEstimation.R | 236 - RiskPortfolios-2.1.3/RiskPortfolios/THANKS | 8 RiskPortfolios-2.1.3/RiskPortfolios/build/partial.rdb |binary RiskPortfolios-2.1.3/RiskPortfolios/inst/CITATION | 68 RiskPortfolios-2.1.3/RiskPortfolios/inst/COPYRIGHTS | 16 RiskPortfolios-2.1.3/RiskPortfolios/man/Industry_10.Rd | 40 RiskPortfolios-2.1.3/RiskPortfolios/man/RiskPortfolios.Rd | 182 - RiskPortfolios-2.1.3/RiskPortfolios/man/covEstimation.Rd | 315 +- RiskPortfolios-2.1.3/RiskPortfolios/man/meanEstimation.Rd | 163 - RiskPortfolios-2.1.3/RiskPortfolios/man/optimalPortfolio.Rd | 523 +-- RiskPortfolios-2.1.3/RiskPortfolios/man/semidevEstimation.Rd | 143 - RiskPortfolios-2.1.3/RiskPortfolios/tests/testthat.R | 8 RiskPortfolios-2.1.3/RiskPortfolios/tests/testthat/test_cov.R | 254 - RiskPortfolios-2.1.3/RiskPortfolios/tests/testthat/test_mean.R | 50 RiskPortfolios-2.1.3/RiskPortfolios/tests/testthat/test_portfolio.R | 334 +- RiskPortfolios-2.1.3/RiskPortfolios/tests/testthat/test_semidev.R | 96 27 files changed, 3157 insertions(+), 3175 deletions(-)
More information about RiskPortfolios at CRAN
Permanent link
Title: Data Science for Psychologists
Description: All datasets and functions required for the examples and exercises of the book "Data Science for Psychologists" (by Hansjoerg Neth, Konstanz University, 2020), available at <https://bookdown.org/hneth/ds4psy/>. The book and course introduce principles and methods of data science to students of psychology and other biological or social sciences. The 'ds4psy' package primarily provides datasets, but also functions for data generation and manipulation (e.g., of text and time data) and graphics that are used in the book and its exercises. All functions included in 'ds4psy' are designed to be instructive and entertaining, rather than elegant or efficient.
Author: Hansjoerg Neth [aut, cre]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between ds4psy versions 0.1.0 dated 2019-08-10 and 0.2.0 dated 2020-04-19
DESCRIPTION | 19 - MD5 | 122 +++++---- NAMESPACE | 26 + NEWS.md | 107 ++++++-- R/color_fun.R | 2 R/data.R | 158 +++++++++-- R/data_fun.R | 584 +++++++++++++++++++++++++++++++++++++++++++- R/plot_fun.R | 559 +++++++++++++++++++++++++++++++----------- R/text_fun.R | 545 ++++++++++++++++++++++++++++++++++++++--- R/theme_fun.R | 6 R/time_fun.R |only R/util_fun.R | 350 ++++++++++++++++++++++++++ README.md | 257 ++++++++++++++----- build/vignette.rds |binary data/fame.rda |only inst/CITATION | 13 inst/doc/ds4psy.R | 14 - inst/doc/ds4psy.Rmd | 34 +- inst/doc/ds4psy.html | 335 ++++++++++++++++++++----- inst/images/CC_BY_NC_SA.png |only man/capitalize.Rd |only man/caseflip.Rd |only man/coin.Rd |only man/count_char.Rd |only man/cur_date.Rd |only man/cur_time.Rd |only man/data_1.Rd | 34 +- man/data_2.Rd | 34 +- man/data_t1.Rd | 34 +- man/data_t1_de.Rd | 34 +- man/data_t1_tab.Rd | 34 +- man/data_t2.Rd | 34 +- man/data_t3.Rd | 34 +- man/data_t4.Rd | 34 +- man/dice.Rd |only man/dice_2.Rd |only man/exp_wide.Rd | 34 +- man/falsePosPsy_all.Rd | 47 ++- man/fame.Rd |only man/is.wholenumber.Rd |only man/l33t_rul35.Rd | 19 + man/make_grid.Rd |only man/num_as_char.Rd |only man/num_as_ordinal.Rd |only man/outliers.Rd | 46 ++- man/pal_ds4psy.Rd | 3 man/pal_n_sq.Rd | 3 man/pi_100k.Rd | 34 +- man/plot_fn.Rd | 48 ++- man/plot_fun.Rd | 47 ++- man/plot_n.Rd | 33 +- man/plot_text.Rd |only man/plot_tiles.Rd | 47 ++- man/posPsy_AHI_CESD.Rd | 67 +++-- man/posPsy_long.Rd | 51 ++- man/posPsy_p_info.Rd | 51 ++- man/posPsy_wide.Rd | 51 ++- man/read_ascii.Rd |only man/sample_dates.Rd |only man/sample_times.Rd |only man/t3.Rd | 34 +- man/t4.Rd | 34 +- man/table6.Rd | 36 +- man/table7.Rd | 36 +- man/table8.Rd | 36 +- man/tb.Rd | 57 +++- man/theme_ds4psy.Rd | 18 - man/transl33t.Rd | 23 + man/what_date.Rd |only man/what_day.Rd |only man/what_month.Rd |only man/what_time.Rd |only man/what_week.Rd |only man/what_year.Rd |only vignettes/ds4psy.Rmd | 34 +- 75 files changed, 3484 insertions(+), 808 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported. There is a also support for vector data operations such as intersections. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Jacob van Etten [ctb],
Michael Sumner [ctb],
Joe Cheng [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ctb],
Duncan Golicher [ctb],
Josh Gray [ctb],
Jonathan A. Greenberg [ctb],
Paul Hiemstra [ctb],
Kassel Hingee [ctb],
Institute for Mathematics Applied Geosciences [cph],
Charles Karney [ctb],
Matteo Mattiuzzi [ctb],
Steven Mosher [ctb],
Jakub Nowosad [ctb],
Edzer Pebesma [ctb],
Oscar Perpinan Lamigueiro [ctb],
Etienne B. Racine [ctb],
Barry Rowlingson [ctb],
Ashton Shortridge [ctb],
Bill Venables [ctb],
Rafael Wueest [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 3.0-12 dated 2020-01-30 and 3.1-5 dated 2020-04-19
raster-3.0-12/raster/build |only raster-3.0-12/raster/inst/doc |only raster-3.0-12/raster/vignettes |only raster-3.1-5/raster/ChangeLog | 13 ++- raster-3.1-5/raster/DESCRIPTION | 10 +- raster-3.1-5/raster/MD5 | 117 +++++++++++++--------------- raster-3.1-5/raster/NAMESPACE | 2 raster-3.1-5/raster/R/AAgeneric_functions.R | 20 +++- raster-3.1-5/raster/R/aggregate_3d.R | 2 raster-3.1-5/raster/R/aggregate_sp.R | 12 +- raster-3.1-5/raster/R/bind.R | 8 - raster-3.1-5/raster/R/brick.R | 2 raster-3.1-5/raster/R/calc.R | 7 - raster-3.1-5/raster/R/clamp.R | 13 +-- raster-3.1-5/raster/R/click.R | 7 - raster-3.1-5/raster/R/coerce.R | 4 raster-3.1-5/raster/R/coverPolygons.R | 4 raster-3.1-5/raster/R/crop.R | 5 - raster-3.1-5/raster/R/cropSpatial.R | 2 raster-3.1-5/raster/R/destair.R | 2 raster-3.1-5/raster/R/distanceFromPoints.R | 6 - raster-3.1-5/raster/R/erase.R | 8 - raster-3.1-5/raster/R/extractLines.R | 2 raster-3.1-5/raster/R/extractPoints_sp.R | 2 raster-3.1-5/raster/R/fasterize.R | 11 +- raster-3.1-5/raster/R/geom.R | 32 +++++-- raster-3.1-5/raster/R/indexReplace.R | 31 ++++--- raster-3.1-5/raster/R/intersect_sp.R | 12 +- raster-3.1-5/raster/R/isLonLat.R | 6 + raster-3.1-5/raster/R/mask.R | 25 +++-- raster-3.1-5/raster/R/netCDFutil.R | 17 +--- raster-3.1-5/raster/R/netCDFwriteCD.R | 4 raster-3.1-5/raster/R/plotCT.R | 16 +-- raster-3.1-5/raster/R/predict.R | 10 +- raster-3.1-5/raster/R/projectRaster.R | 12 ++ raster-3.1-5/raster/R/projection.R | 44 ++++++++-- raster-3.1-5/raster/R/raster.R | 4 raster-3.1-5/raster/R/rasterFromGDAL.R | 4 raster-3.1-5/raster/R/resample.R | 3 raster-3.1-5/raster/R/select.R | 2 raster-3.1-5/raster/R/simplifyPols.R | 2 raster-3.1-5/raster/R/spplot.R | 1 raster-3.1-5/raster/R/stack.R | 3 raster-3.1-5/raster/R/symdif.R | 2 raster-3.1-5/raster/R/union_sp.R | 2 raster-3.1-5/raster/R/which.max.R | 17 ---- raster-3.1-5/raster/R/writeStartStop.R | 52 +++++------- raster-3.1-5/raster/R/writeValues.R | 76 +++++++++--------- raster-3.1-5/raster/R/xyCell.R | 9 +- raster-3.1-5/raster/man/addLayer.Rd | 2 raster-3.1-5/raster/man/adjacent.Rd | 2 raster-3.1-5/raster/man/aggregate.Rd | 8 - raster-3.1-5/raster/man/area.Rd | 2 raster-3.1-5/raster/man/extract.Rd | 2 raster-3.1-5/raster/man/focal.Rd | 13 ++- raster-3.1-5/raster/man/isLonLat.Rd | 1 raster-3.1-5/raster/man/raster-package.Rd | 8 - raster-3.1-5/raster/man/writeValues.Rd | 13 ++- raster-3.1-5/raster/man/xyFromCell.Rd | 2 raster-3.1-5/raster/src/modal.cpp | 2 60 files changed, 397 insertions(+), 303 deletions(-)
Title: High Performance Container Data Types
Description: Provides high performance container data types such
as queues, stacks, deques, dicts and ordered dicts. Benchmarks
<https://randy3k.github.io/collections/articles/benchmark.html> have
shown that these containers are asymptotically more efficient than
those offered by other packages.
Author: Randy Lai [aut, cre],
Andrea Mazzoleni [cph] (tommy hash table library)
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between collections versions 0.2.5 dated 2020-03-15 and 0.3.0 dated 2020-04-19
collections-0.2.5/collections/man/Deque.Rd |only collections-0.2.5/collections/man/DequeL.Rd |only collections-0.2.5/collections/man/Dict.Rd |only collections-0.2.5/collections/man/DictL.Rd |only collections-0.2.5/collections/man/OrderedDict.Rd |only collections-0.2.5/collections/man/OrderedDictL.Rd |only collections-0.2.5/collections/man/PriorityQueue.Rd |only collections-0.2.5/collections/man/Queue.Rd |only collections-0.2.5/collections/man/QueueL.Rd |only collections-0.2.5/collections/man/Stack.Rd |only collections-0.2.5/collections/man/StackL.Rd |only collections-0.3.0/collections/DESCRIPTION | 15 collections-0.3.0/collections/MD5 | 64 +-- collections-0.3.0/collections/NAMESPACE | 26 - collections-0.3.0/collections/R/collections.R | 2 collections-0.3.0/collections/R/deque.R | 133 ------- collections-0.3.0/collections/R/dict.R | 168 ---------- collections-0.3.0/collections/R/ordered_dict.R | 155 --------- collections-0.3.0/collections/R/priority_queue.R | 10 collections-0.3.0/collections/R/queue.R | 89 ----- collections-0.3.0/collections/R/stack.R | 90 ----- collections-0.3.0/collections/R/zzz.R | 110 +----- collections-0.3.0/collections/README.md | 124 +++++-- collections-0.3.0/collections/man/collections-package.Rd | 4 collections-0.3.0/collections/man/deprecated.Rd |only collections-0.3.0/collections/man/deque.Rd |only collections-0.3.0/collections/man/dict.Rd |only collections-0.3.0/collections/man/ordered_dict.Rd |only collections-0.3.0/collections/man/priority_queue.Rd |only collections-0.3.0/collections/man/queue.Rd |only collections-0.3.0/collections/man/stack.Rd |only collections-0.3.0/collections/src/collections.c | 4 collections-0.3.0/collections/src/deque.h | 4 collections-0.3.0/collections/src/dict.c | 38 ++ collections-0.3.0/collections/src/dict.h | 11 collections-0.3.0/collections/src/tommyds/tommyhashlin.h | 1 collections-0.3.0/collections/tests/testthat/test-deque.R | 31 - collections-0.3.0/collections/tests/testthat/test-dict.R | 32 - collections-0.3.0/collections/tests/testthat/test-ordered_dict.R | 26 - collections-0.3.0/collections/tests/testthat/test-priority_queue.R | 20 - collections-0.3.0/collections/tests/testthat/test-queue.R | 15 collections-0.3.0/collections/tests/testthat/test-stack.R | 16 42 files changed, 310 insertions(+), 878 deletions(-)
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Description: Provides the bayesGARCH() function which performs the
Bayesian estimation of the GARCH(1,1) model with Student's t innovations as described in Ardia (2008) <doi:10.1007/978-3-540-78657-3>.
Author: David Ardia [aut, cre, cph] (<https://orcid.org/0000-0003-2823-782X>)
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between bayesGARCH versions 2.1.3 dated 2017-02-04 and 2.1.4 dated 2020-04-19
bayesGARCH-2.1.3/bayesGARCH/README |only bayesGARCH-2.1.4/bayesGARCH/COPYING | 680 +++++++++---------- bayesGARCH-2.1.4/bayesGARCH/DESCRIPTION | 13 bayesGARCH-2.1.4/bayesGARCH/MD5 | 29 bayesGARCH-2.1.4/bayesGARCH/NAMESPACE | 14 bayesGARCH-2.1.4/bayesGARCH/NEWS | 128 +-- bayesGARCH-2.1.4/bayesGARCH/R/functions.R | 102 +- bayesGARCH-2.1.4/bayesGARCH/R/sampler.R | 920 +++++++++++++------------- bayesGARCH-2.1.4/bayesGARCH/README.md | 57 - bayesGARCH-2.1.4/bayesGARCH/THANKS | 10 bayesGARCH-2.1.4/bayesGARCH/build/partial.rdb |binary bayesGARCH-2.1.4/bayesGARCH/inst/CITATION | 113 +-- bayesGARCH-2.1.4/bayesGARCH/inst/COPYRIGHTS | 20 bayesGARCH-2.1.4/bayesGARCH/man/bayesGARCH.Rd | 535 +++++++-------- bayesGARCH-2.1.4/bayesGARCH/man/dem2gbp.Rd | 68 - bayesGARCH-2.1.4/bayesGARCH/man/formSmpl.Rd | 84 +- 16 files changed, 1387 insertions(+), 1386 deletions(-)
Title: Adaptive Mixture of Student-t Distributions
Description: Provides functions to perform the fitting of an adaptive mixture
of Student-t distributions to a target density through its kernel function as described in
Ardia et al. (2009) <doi:10.18637/jss.v029.i03>. The
mixture approximation can then be used as the importance density in importance
sampling or as the candidate density in the Metropolis-Hastings algorithm to
obtain quantities of interest for the target density itself.
Author: David Ardia [aut, cre, cph] (<https://orcid.org/0000-0003-2823-782X>),
Lennart Hoogerheide [ctb],
Herman van Dijk [ctb]
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between AdMit versions 2.1.3 dated 2017-02-04 and 2.1.4 dated 2020-04-19
COPYING | 680 ++++++++-------- DESCRIPTION | 18 MD5 | 76 - NAMESPACE | 18 NEWS | 185 ++-- R/AdMit.R | 558 ++++++------- R/AdMitIS.R | 114 +- R/AdMitMH.R | 84 +- R/dMit.R | 96 +- R/fn.CV.R | 28 R/fn.computeexpw.R | 30 R/fn.dmvt.R | 32 R/fn.isPD.R | 22 R/fn.isSingular.R | 26 R/fn.muSigma.R | 46 - R/fn.optimmu.R | 134 +-- R/fn.optimp.R | 204 ++-- R/fn.rmvt.R | 30 R/fn.w.R | 52 - R/fn.wIS.R | 78 - R/fn.wRes.R | 110 +- R/rMit.R | 86 +- README.md | 64 - THANKS | 14 build/partial.rdb |binary build/vignette.rds |binary demo/00Index | 2 demo/AdMit.R | 594 +++++++------- inst/CITATION | 90 +- inst/COPYRIGHTS | 20 inst/doc/AdMit.R | 404 ++++----- inst/doc/AdMit.Rnw | 1922 +++++++++++++++++++++++------------------------ inst/doc/AdMit.pdf |binary man/AdMit.Rd | 600 +++++++------- man/AdMitIS.Rd | 276 +++--- man/AdMitMH.Rd | 264 +++--- man/Mit.Rd | 240 ++--- vignettes/AdMit.Rnw | 1922 +++++++++++++++++++++++------------------------ vignettes/REFERENCES.bib | 574 +++++++------- 39 files changed, 4849 insertions(+), 4844 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-16 0.8.2
Title: Tools for Quantitative Risk Management
Description: Functions and data sets for reproducing selected results from
the book "Quantitative Risk Management: Concepts, Techniques and Tools".
Furthermore, new developments and auxiliary functions for Quantitative
Risk Management practice.
Author: Marius Hofert [aut, cre],
Kurt Hornik [aut],
Alexander J. McNeil [aut]
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between qrmtools versions 0.0-12 dated 2020-01-13 and 0.0-13 dated 2020-04-19
qrmtools-0.0-12/qrmtools/R/VaR_ES_bounds.R |only qrmtools-0.0-12/qrmtools/man/VaR_ES_bounds.Rd |only qrmtools-0.0-13/qrmtools/DESCRIPTION | 10 - qrmtools-0.0-13/qrmtools/MD5 | 18 +- qrmtools-0.0-13/qrmtools/R/VaR_ES_bounds_analytical.R |only qrmtools-0.0-13/qrmtools/R/VaR_ES_bounds_rearrange.R |only qrmtools-0.0-13/qrmtools/build/vignette.rds |binary qrmtools-0.0-13/qrmtools/inst/NEWS.Rd | 8 + qrmtools-0.0-13/qrmtools/inst/doc/ARMA_GARCH_VaR.html | 20 +- qrmtools-0.0-13/qrmtools/inst/doc/VaR_bounds.html | 68 +++++----- qrmtools-0.0-13/qrmtools/inst/doc/geometric_risk_measures.html | 18 +- qrmtools-0.0-13/qrmtools/man/VaR_ES_bounds_analytical.Rd |only qrmtools-0.0-13/qrmtools/man/VaR_ES_bounds_rearrange.Rd |only 13 files changed, 79 insertions(+), 63 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <gschneidz@gmail.com>
Diff between NSM3 versions 1.13 dated 2020-03-22 and 1.14 dated 2020-04-19
DESCRIPTION | 8 +- MD5 | 8 +- R/e.mc.R | 187 +++++++++++++++++++++++++++--------------------------------- R/epstein.R | 155 ++++++++++++++++++++++--------------------------- man/e.mc.Rd | 90 ++++++++++++++-------------- 5 files changed, 208 insertions(+), 240 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Henrik Singmann [ctb],
Jonathon Love [ctb],
Paul Buerkner [ctb],
Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.4.5 dated 2020-03-04 and 1.4.6 dated 2020-04-19
DESCRIPTION | 11 + MD5 | 83 +++++++------- NAMESPACE | 2 NEWS.md | 19 +++ R/0nly-internal.R | 19 +++ R/emmeans.R | 11 + R/helpers.R | 71 +++++++----- R/interfacing.R | 3 R/nested.R | 38 ++++-- R/pwpp.R | 207 ++++++++++++++++++++++++++++++++++++- R/ref-grid.R | 18 ++- R/test.R | 2 inst/doc/FAQs.html | 6 - inst/doc/basics.R | 7 + inst/doc/basics.Rmd | 18 +++ inst/doc/basics.html | 14 ++ inst/doc/comparisons.R | 8 + inst/doc/comparisons.Rmd | 25 ++++ inst/doc/comparisons.html | 39 ++++++ inst/doc/confidence-intervals.html | 14 +- inst/doc/interactions.html | 18 +-- inst/doc/messy-data.html | 4 inst/doc/models.Rmd | 11 + inst/doc/models.html | 8 - inst/doc/predictions.html | 4 inst/doc/sophisticated.html | 4 inst/doc/transformations.R | 3 inst/doc/transformations.Rmd | 17 ++- inst/doc/transformations.html | 19 ++- inst/doc/utilities.html | 4 inst/doc/vignette-topics.Rmd | 12 +- inst/doc/vignette-topics.html | 20 ++- inst/doc/xtending.html | 8 - man/emmeans.Rd | 5 man/extending-emmeans.Rd | 3 man/pwpm.Rd |only man/pwpp.Rd | 15 ++ man/ref_grid.Rd | 14 +- vignettes/basics.Rmd | 18 +++ vignettes/comparisons.Rmd | 25 ++++ vignettes/models.Rmd | 11 + vignettes/transformations.Rmd | 17 ++- vignettes/vignette-topics.Rmd | 12 +- 43 files changed, 689 insertions(+), 178 deletions(-)
Title: Tidying Methods for Mixed Models
Description: Convert fitted objects from various R mixed-model packages
into tidy data frames along the lines of the 'broom' package.
The package provides three
S3 generics for each model: tidy(), which summarizes a model's statistical findings such as
coefficients of a regression; augment(), which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance(), which
provides a one-row summary of model-level statistics.
Author: Ben Bolker [aut, cre] (<https://orcid.org/0000-0002-2127-0443>),
David Robinson [aut],
Dieter Menne [ctb],
Jonah Gabry [ctb],
Paul Buerkner [ctb],
Christopher Hua [ctb],
William Petry [ctb] (<https://orcid.org/0000-0002-5230-5987>),
Joshua Wiley [ctb] (<https://orcid.org/0000-0002-0271-6702>),
Patrick Kennedy [ctb],
Eduard Szöcs [ctb] (<https://orcid.org/0000-0001-5376-1194>, BASF SE),
Indrajeet Patil [ctb]
Maintainer: Ben Bolker <bolker@mcmaster.ca>
Diff between broom.mixed versions 0.2.4 dated 2019-02-21 and 0.2.5 dated 2020-04-19
broom.mixed-0.2.4/broom.mixed/inst/extdata/test.R |only broom.mixed-0.2.5/broom.mixed/DESCRIPTION | 23 broom.mixed-0.2.5/broom.mixed/MD5 | 71 +- broom.mixed-0.2.5/broom.mixed/NAMESPACE | 3 broom.mixed-0.2.5/broom.mixed/R/GLMMadaptive_tidiers.R |only broom.mixed-0.2.5/broom.mixed/R/brms_tidiers.R | 38 - broom.mixed-0.2.5/broom.mixed/R/glmmADMB_tidiers.R | 2 broom.mixed-0.2.5/broom.mixed/R/glmmTMB_tidiers.R | 21 broom.mixed-0.2.5/broom.mixed/R/hooks.R | 6 broom.mixed-0.2.5/broom.mixed/R/lme4_tidiers.R | 55 - broom.mixed-0.2.5/broom.mixed/R/mcmc_tidiers.R | 12 broom.mixed-0.2.5/broom.mixed/R/nlme_tidiers.R | 31 broom.mixed-0.2.5/broom.mixed/R/rstanarm_tidiers.R | 342 ++++------ broom.mixed-0.2.5/broom.mixed/R/utilities.R | 20 broom.mixed-0.2.5/broom.mixed/build/vignette.rds |binary broom.mixed-0.2.5/broom.mixed/inst/NEWS.Rd | 15 broom.mixed-0.2.5/broom.mixed/inst/doc/broom_mixed_intro.R | 6 broom.mixed-0.2.5/broom.mixed/inst/doc/broom_mixed_intro.html | 32 broom.mixed-0.2.5/broom.mixed/inst/extdata/brms_example.rda |binary broom.mixed-0.2.5/broom.mixed/man/augment.ranef.mer.Rd | 3 broom.mixed-0.2.5/broom.mixed/man/brms_tidiers.Rd | 22 broom.mixed-0.2.5/broom.mixed/man/extractEffects.Rd | 8 broom.mixed-0.2.5/broom.mixed/man/gamlss_tidiers.Rd | 3 broom.mixed-0.2.5/broom.mixed/man/glmmTMB_tidiers.Rd | 25 broom.mixed-0.2.5/broom.mixed/man/glmmadmb_tidiers.Rd | 14 broom.mixed-0.2.5/broom.mixed/man/lme4_tidiers.Rd | 53 + broom.mixed-0.2.5/broom.mixed/man/mcmc_tidiers.Rd | 99 ++ broom.mixed-0.2.5/broom.mixed/man/nlme_tidiers.Rd | 24 broom.mixed-0.2.5/broom.mixed/man/reexports.Rd | 2 broom.mixed-0.2.5/broom.mixed/man/rstanarm_tidiers.Rd | 10 broom.mixed-0.2.5/broom.mixed/man/tidy.TMB.Rd | 11 broom.mixed-0.2.5/broom.mixed/tests/testthat/test-alltibbles.R | 1 broom.mixed-0.2.5/broom.mixed/tests/testthat/test-brms.R |only broom.mixed-0.2.5/broom.mixed/tests/testthat/test-glmmTMB.R | 8 broom.mixed-0.2.5/broom.mixed/tests/testthat/test-lme4.R | 33 broom.mixed-0.2.5/broom.mixed/tests/testthat/test-lmertest.R | 12 broom.mixed-0.2.5/broom.mixed/tests/testthat/test-mcmc.R | 13 broom.mixed-0.2.5/broom.mixed/tests/testthat/test-nlme.R | 14 38 files changed, 649 insertions(+), 383 deletions(-)