Title: Affine Invariant Tests of Multivariate Normality
Description: Various affine invariant multivariate normality tests are provided. It is designed to accompany the survey article Ebner, B. and Henze, N. (2020) <arXiv:2004.07332> titled "Tests for multivariate normality -- a critical review with emphasis on weighted L^2-statistics". We implement new and time honoured L^2-type tests of multivariate normality, such as the Baringhaus-Henze-Epps-Pulley (BHEP) test, the Henze-Zirkler test, the test of Henze-Jiménes-Gamero, the test of Henze-Jiménes-Gamero-Meintanis, the test of Henze-Visage, the Dörr-Ebner-Henze test based on harmonic oscillator and the Dörr-Ebner-Henze test based on a double estimation in a PDE. Secondly, we include the measures of multivariate skewness and kurtosis by Mardia, Koziol, Malkovich and Afifi and Móri, Rohatgi and Székely, as well as the associated tests. Thirdly, we include the tests of multivariate normality by Cox and Small, the 'energy' test of Székely and Rizzo, the tests based on spherical harmonics by Manzotti and Quiroz and the test of Pudelko. All the functions and tests need the data to be a n x d matrix where n is the samplesize (number of rows) and d is the dimension (number of columns).
Author: Lucas Butsch [aut],
Bruno Ebner [aut, cre],
Jaco Visagie [ctb],
Johann Siemens [ctb]
Maintainer: Bruno Ebner <bruno.ebner@kit.edu>
Diff between mnt versions 1.0 dated 2020-04-23 and 1.2 dated 2020-04-25
mnt-1.0/mnt/man/ENorm.Rd |only mnt-1.0/mnt/man/H1.Rd |only mnt-1.0/mnt/man/L2.random.field.Rd |only mnt-1.0/mnt/man/empchar.Rd |only mnt-1.0/mnt/man/hilf.e.Rd |only mnt-1.2/mnt/DESCRIPTION | 12 +-- mnt-1.2/mnt/MD5 | 103 +++++++++++++--------------- mnt-1.2/mnt/NAMESPACE | 2 mnt-1.2/mnt/R/helpFunctions.R | 133 ++----------------------------------- mnt-1.2/mnt/R/multNormTest.R | 2 mnt-1.2/mnt/R/teststatistics.R | 1 mnt-1.2/mnt/data/Quantile09.rda |binary mnt-1.2/mnt/data/Quantile095.rda |binary mnt-1.2/mnt/data/Quantile099.rda |binary mnt-1.2/mnt/man/BHEP.Rd | 66 +++++++++--------- mnt-1.2/mnt/man/CS.Rd | 68 +++++++++--------- mnt-1.2/mnt/man/DEHT.Rd | 62 ++++++++--------- mnt-1.2/mnt/man/DEHU.Rd | 54 +++++++-------- mnt-1.2/mnt/man/HJG.Rd | 62 ++++++++--------- mnt-1.2/mnt/man/HJM.Rd | 62 ++++++++--------- mnt-1.2/mnt/man/HV.Rd | 68 +++++++++--------- mnt-1.2/mnt/man/HZ.Rd | 60 ++++++++-------- mnt-1.2/mnt/man/KKurt.Rd | 60 ++++++++-------- mnt-1.2/mnt/man/MAKurt.Rd | 68 +++++++++--------- mnt-1.2/mnt/man/MASkew.Rd | 68 +++++++++--------- mnt-1.2/mnt/man/MQ1.Rd | 48 ++++++------- mnt-1.2/mnt/man/MQ2.Rd | 48 ++++++------- mnt-1.2/mnt/man/MRSSkew.Rd | 56 +++++++-------- mnt-1.2/mnt/man/MSkew.Rd | 64 ++++++++--------- mnt-1.2/mnt/man/PU.Rd | 58 ++++++++-------- mnt-1.2/mnt/man/Quantile09.Rd | 54 +++++++-------- mnt-1.2/mnt/man/Quantile095.Rd | 54 +++++++-------- mnt-1.2/mnt/man/Quantile099.Rd | 54 +++++++-------- mnt-1.2/mnt/man/SR.Rd | 60 ++++++++-------- mnt-1.2/mnt/man/cv.quan.Rd | 76 ++++++++++----------- mnt-1.2/mnt/man/print.mnt.Rd | 54 +++++++-------- mnt-1.2/mnt/man/standard.Rd | 40 ++++------- mnt-1.2/mnt/man/test.BHEP.Rd | 88 ++++++++++++------------ mnt-1.2/mnt/man/test.CS.Rd | 92 ++++++++++++------------- mnt-1.2/mnt/man/test.DEHT.Rd | 90 ++++++++++++------------- mnt-1.2/mnt/man/test.DEHU.Rd | 90 ++++++++++++------------- mnt-1.2/mnt/man/test.HJG.Rd | 88 ++++++++++++------------ mnt-1.2/mnt/man/test.HJM.Rd | 90 ++++++++++++------------- mnt-1.2/mnt/man/test.HV.Rd | 96 +++++++++++++------------- mnt-1.2/mnt/man/test.HZ.Rd | 80 +++++++++++----------- mnt-1.2/mnt/man/test.KKurt.Rd | 84 +++++++++++------------ mnt-1.2/mnt/man/test.MAKurt.Rd | 96 +++++++++++++------------- mnt-1.2/mnt/man/test.MASkew.Rd | 96 +++++++++++++------------- mnt-1.2/mnt/man/test.MKurt.Rd | 88 ++++++++++++------------ mnt-1.2/mnt/man/test.MQ1.Rd | 74 ++++++++++---------- mnt-1.2/mnt/man/test.MQ2.Rd | 72 ++++++++++---------- mnt-1.2/mnt/man/test.MRSSkew.Rd | 88 ++++++++++++------------ mnt-1.2/mnt/man/test.MSkew.Rd | 88 ++++++++++++------------ mnt-1.2/mnt/man/test.PU.Rd | 86 +++++++++++------------ mnt-1.2/mnt/man/test.SR.Rd | 76 ++++++++++----------- 55 files changed, 1531 insertions(+), 1648 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE), measurement models are typically multivariate normal factor models.
Using the original ctsem formulation based on OpenMx, described in the JSS paper
"Continuous Time Structural Equation Modeling with R Package ctsem", with updated version
as CRAN vignette <https://cran.r-project.org/package=ctsem/vignettes/ctsem.pdf> ,
linear mixed effects SDE's estimated via maximum likelihood and optimization are possible.
Using the Stan based formulation, described in <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf> ,
nonlinearity (state dependent parameters) and random effects on all parameters
are possible, using either optimization (with optional importance sampling) or
Stan's Hamiltonian Monte Carlo sampling. Priors may be used. For the conceptual
overview of the hierarchical Bayesian linear SDE approach, see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Modeling>.
Exogenous inputs may also be included, for an overview of such possibilities see <https://www.researchgate.net/publication/328221807_Understanding_the_Time_Course_of_Interventions_with_Continuous_Time_Dynamic_Models> .
Stan based functions are not available on 32 bit Windows systems at present.
<https://cdriver.netlify.com> contains some tutorial blog posts.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 3.2.0 dated 2020-04-21 and 3.2.1 dated 2020-04-25
ctsem-3.2.0/ctsem/data/ctstantestfit.rda |only ctsem-3.2.1/ctsem/DESCRIPTION | 8 ctsem-3.2.1/ctsem/MD5 | 131 +++++++-------- ctsem-3.2.1/ctsem/NEWS | 5 ctsem-3.2.1/ctsem/R/Kalman.R | 3 ctsem-3.2.1/ctsem/R/aa_ctstantestfit.R |only ctsem-3.2.1/ctsem/R/ctCheckFit.R | 2 ctsem-3.2.1/ctsem/R/ctDiscretePars.R | 26 +-- ctsem-3.2.1/ctsem/R/ctJacobian.R | 1 ctsem-3.2.1/ctsem/R/ctKalman.R | 4 ctsem-3.2.1/ctsem/R/ctPlotArray.R | 1 ctsem-3.2.1/ctsem/R/ctStanContinuousPars.R | 1 ctsem-3.2.1/ctsem/R/ctStanData.R | 5 ctsem-3.2.1/ctsem/R/ctStanFit.R | 11 - ctsem-3.2.1/ctsem/R/ctStanGenerate.R | 7 ctsem-3.2.1/ctsem/R/ctStanGenerateFromFit.R | 1 ctsem-3.2.1/ctsem/R/ctStanKalman.R | 15 + ctsem-3.2.1/ctsem/R/ctStanModel.R | 2 ctsem-3.2.1/ctsem/R/ctStanModelWriter.R | 13 - ctsem-3.2.1/ctsem/R/ctStanParMatrices.R | 1 ctsem-3.2.1/ctsem/R/ctStanPlotPost.R | 3 ctsem-3.2.1/ctsem/R/ctStanPostPredict.R | 3 ctsem-3.2.1/ctsem/R/ctStanTIpredMarginal.R | 1 ctsem-3.2.1/ctsem/R/ctStanTIpredeffects.R | 5 ctsem-3.2.1/ctsem/R/ctStanUpdModel.R | 1 ctsem-3.2.1/ctsem/R/ctdataupdate.R | 44 ++--- ctsem-3.2.1/ctsem/R/ctsem.R | 2 ctsem-3.2.1/ctsem/R/extract.ctStanFit.R | 3 ctsem-3.2.1/ctsem/R/plot.ctStanFit.R | 1 ctsem-3.2.1/ctsem/R/sgdhess.R |only ctsem-3.2.1/ctsem/R/sgdmcmc.R | 24 +- ctsem-3.2.1/ctsem/R/stan_unconstrainsamples.R | 1 ctsem-3.2.1/ctsem/R/stanoptimis.R | 163 +++++++++++++++---- ctsem-3.2.1/ctsem/R/summary.ctStanFit.R | 1 ctsem-3.2.1/ctsem/R/tformshapes.R | 8 ctsem-3.2.1/ctsem/build/vignette.rds |binary ctsem-3.2.1/ctsem/inst/doc/ctsem.pdf |binary ctsem-3.2.1/ctsem/man/Kalman.Rd | 3 ctsem-3.2.1/ctsem/man/ctDiscretePars.Rd | 3 ctsem-3.2.1/ctsem/man/ctDocs.Rd | 2 ctsem-3.2.1/ctsem/man/ctExtract.Rd | 3 ctsem-3.2.1/ctsem/man/ctKalman.Rd | 2 ctsem-3.2.1/ctsem/man/ctPlotArray.Rd | 1 ctsem-3.2.1/ctsem/man/ctStanContinuousPars.Rd | 1 ctsem-3.2.1/ctsem/man/ctStanDiscretePars.Rd | 15 + ctsem-3.2.1/ctsem/man/ctStanDiscreteParsPlot.Rd | 4 ctsem-3.2.1/ctsem/man/ctStanFit.Rd | 9 - ctsem-3.2.1/ctsem/man/ctStanGenerate.Rd | 3 ctsem-3.2.1/ctsem/man/ctStanGenerateFromFit.Rd | 1 ctsem-3.2.1/ctsem/man/ctStanKalman.Rd | 4 ctsem-3.2.1/ctsem/man/ctStanParMatrices.Rd | 1 ctsem-3.2.1/ctsem/man/ctStanParnames.Rd | 2 ctsem-3.2.1/ctsem/man/ctStanPlotPost.Rd | 3 ctsem-3.2.1/ctsem/man/ctStanPostPredict.Rd | 3 ctsem-3.2.1/ctsem/man/ctStanTIpredMarginal.Rd | 1 ctsem-3.2.1/ctsem/man/ctStanTIpredeffects.Rd | 5 ctsem-3.2.1/ctsem/man/ctStanUpdModel.Rd | 1 ctsem-3.2.1/ctsem/man/ctstantestfit.Rd | 33 +++ ctsem-3.2.1/ctsem/man/plot.ctKalmanDF.Rd | 2 ctsem-3.2.1/ctsem/man/plot.ctStanFit.Rd | 1 ctsem-3.2.1/ctsem/man/plot.ctsemFitMeasure.Rd | 2 ctsem-3.2.1/ctsem/man/stan_reinitsf.Rd | 1 ctsem-3.2.1/ctsem/man/stan_unconstrainsamples.Rd | 1 ctsem-3.2.1/ctsem/man/standatact_specificsubjects.Rd | 3 ctsem-3.2.1/ctsem/man/summary.ctStanFit.Rd | 1 ctsem-3.2.1/ctsem/src/stan_files/ctsm.stan | 21 -- ctsem-3.2.1/ctsem/src/stan_files/ctsmgen.stan | 21 -- ctsem-3.2.1/ctsem/tests/testthat/test-knownFits.R | 6 68 files changed, 434 insertions(+), 222 deletions(-)
Title: Synthetic Microdata and Spatial MicroSimulation Modeling for ACS
Data
Description: Provides access to curated American Community Survey (ACS) base tables via a wrapper
to library(acs). Builds synthetic micro-datasets at any user-specified geographic level with
ten default attributes; and, conducts spatial microsimulation modeling (SMSM) via simulated
annealing. SMSM is conducted in parallel by default. Lastly, we provide functionality for
data-extensibility of micro-datasets.
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>
Diff between synthACS versions 1.5.6 dated 2020-04-02 and 1.5.7 dated 2020-04-25
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/CITATION | 23 ++++++++++++----------- inst/doc/jss_synthACS.pdf |binary 4 files changed, 18 insertions(+), 17 deletions(-)
Title: Additional Layout Algorithms for Network Visualizations
Description: Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.
Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.
Some more specific algorithms allow to emphasize hidden group structures in networks or focus on specific nodes.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david.schoch@manchester.ac.uk>
Diff between graphlayouts versions 0.6.0 dated 2020-03-09 and 0.7.0 dated 2020-04-25
DESCRIPTION | 11 +- MD5 | 29 +++-- NAMESPACE | 4 NEWS.md | 6 + R/RcppExports.R | 16 +++ R/data-examples.R |only R/layout_backbone.R | 3 R/layout_multilevel.R |only R/layout_stress.R | 195 +++++++++++++++++++++++++++++++++++-- R/layouts.R | 17 +++ data |only man/layout_constrained_stress.Rd | 3 man/layout_constrained_stress3D.Rd |only man/layout_multilevel.Rd |only man/layout_stress.Rd | 3 man/layout_stress3D.Rd |only man/multilvl_ex.Rd |only src/RcppExports.cpp | 61 +++++++++++ src/constrained_stress3D.cpp |only src/stress3D.cpp |only 20 files changed, 323 insertions(+), 25 deletions(-)
Title: 'optimx' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the R Optimization Infrastructure ('ROI') package
with the 'optimx' package.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.optimx versions 0.3-2 dated 2019-01-25 and 0.3-3 dated 2020-04-25
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
More information about ROI.plugin.optimx at CRAN
Permanent link
Title: Replicate and Analyse 'InterVA5'
Description: Provides an R version of the 'InterVA5' software (<http://www.interva.net>) for coding cause of death from verbal autopsies. It also provides simple graphical representation of individual and population level statistics.
Author: Matthew Boyas [aut],
Peter Byass [aut],
Sam Clark [aut],
Zehang Li [aut],
Tyler McCormick [aut],
Jason Thomas [aut, cre]
Maintainer: Jason Thomas <jarathomas@gmail.com>
Diff between InterVA5 versions 1.0.4 dated 2019-11-13 and 1.1.0 dated 2020-04-25
DESCRIPTION | 14 +++++++------- MD5 | 36 +++++++++++++++++++----------------- NEWS.md | 6 ++++++ R/InterVA5.plot.R | 37 ++++++++++++++++++++++++++++++------- R/InterVA5_1.0-package.R | 23 +++++++++++++++++++++++ data/probbaseV5.rda |binary data/probbaseV5_18.rda |only man/CSMF5.Rd | 12 ++++++++++-- man/InterVA5.Rd | 17 ++++++++++++++--- man/RandomVA5.Rd | 4 +++- man/causetextV5.Rd | 6 ++++-- man/getTopSymptoms.Rd | 3 +-- man/probbaseV5.Rd | 6 ++++-- man/probbaseV5_14.Rd | 6 ++++-- man/probbaseV5_17.Rd | 6 ++++-- man/probbaseV5_18.Rd |only man/summary.interVA5.Rd | 3 +-- man/whyNotCOD.Rd | 3 +-- tests/testthat/InterVA5_dummy_v2.R | 11 +++++++---- tests/testthat/tests.InterVA5.R | 2 +- 20 files changed, 139 insertions(+), 56 deletions(-)
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.
Author: David Meyer [aut, cre],
Christian Buchta [aut]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between proxy versions 0.4-23 dated 2019-03-05 and 0.4-24 dated 2020-04-25
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary inst/NEWS.Rd | 6 ++++++ inst/doc/overview.pdf |binary tests/apply.R | 6 ++++-- tests/apply.Rout.save | 23 ++++++++++++----------- 7 files changed, 31 insertions(+), 22 deletions(-)
Title: Bootstrap Methods for Network Inference
Description: Functions for analysis of network objects, which are imported or simulated by the package. The non-parametric methods of analysis center on snowball and bootstrap sampling for estimating functions of network degree distribution. For other parameters of interest, see, e.g., 'bootnet' package.
Author: Leticia Ramirez-Ramirez [aut],
Kusha Nezafati [aut],
Yuzhou Chen [aut],
Vyacheslav Lyubchich [aut, cre]
(<https://orcid.org/0000-0001-7936-4285>),
Yulia R. Gel [aut]
Maintainer: Vyacheslav Lyubchich <lyubchich@umces.edu>
Diff between snowboot versions 1.0.1 dated 2019-02-24 and 1.0.2 dated 2020-04-25
DESCRIPTION | 23 +++++++++++++++-------- MD5 | 18 ++++++++++-------- R/network_construction.R | 8 ++++---- R/vgam_extract.R |only build/partial.rdb |binary man/artificial_networks.Rd | 6 ++++-- man/lsmi_cv.Rd | 16 +++++++++++++--- man/plot.snowboot.Rd | 24 ++++++++++++++++++------ man/random_network.Rd | 3 +-- src/RcppExports.cpp | 3 +++ src/zeta3.c |only 11 files changed, 68 insertions(+), 33 deletions(-)
Title: Create, Build and Maintain Packages
Description: Helper functions for package creation, building and
maintenance. Designed to work with a build system such as 'GNU make' or
package 'fakemake' to help you to conditionally work through the stages of
package development (such as spell checking, linting, testing, before
building and checking a package).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between packager versions 1.2.0 dated 2020-04-14 and 1.2.1 dated 2020-04-25
DESCRIPTION | 16 +-- MD5 | 46 +++++---- NAMESPACE | 1 NEWS.md | 8 + R/checks.R | 2 R/convert_vignette.R | 113 ++++++++++++++++------- R/cran_comments.R | 4 R/devtools_modified.R | 8 - R/devtools_verbatim.R | 15 ++- R/internal.R | 12 +- R/main.R | 4 R/makelist.R | 4 R/submit.R | 4 R/tools.R | 12 +- inst/doc/An_Introduction_to_packager.R | 12 ++ inst/doc/An_Introduction_to_packager.Rasciidoc | 10 +- inst/doc/An_Introduction_to_packager.html | 106 ++++++++++----------- inst/files/An_Introduction_to_packager.Rasciidoc |only inst/files/An_Introduction_to_packager.Rmd |only inst/runit_tests/test_convert_vignette.R |only man/as.package.Rd |only man/check_archive.Rd | 2 man/use_build_ignore.Rd | 2 man/use_directory.Rd | 2 man/use_template.Rd | 4 vignettes/An_Introduction_to_packager.Rasciidoc | 10 +- 26 files changed, 244 insertions(+), 153 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for descriptive statistics (e.g., frequency table, cross tabulation, multilevel descriptive statistics, coefficient alpha and omega, and various effect size measures), missing data (e.g., descriptive statistics for missing data, missing data pattern and auxiliary variable analysis), data management (e.g., reading and writing SPSS and Excel files, grand-mean and group-mean centering, recode variables and reverse code items, and scale and group scores), and statistical analysis (e.g., confidence intervals, Levene's test, z-test, and sample size determination).
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.3.0 dated 2020-04-06 and 0.3.1 dated 2020-04-25
DESCRIPTION | 12 - MD5 | 184 +++++++++++++++-------------- NAMESPACE | 5 NEWS.md | 13 ++ R/alpha.coef.R | 22 ++- R/as.na.R | 18 ++ R/center.R | 10 + R/ci.mean.R | 26 ++-- R/ci.mean.diff.R | 124 +++++++++++--------- R/ci.median.R | 18 ++ R/ci.prop.R | 18 ++ R/ci.prop.diff.R | 58 ++++++--- R/ci.sd.R | 18 ++ R/ci.var.R | 20 ++- R/cohens.d.R | 36 +++-- R/cont.coef.R | 14 +- R/cor.matrix.R | 21 ++- R/cramers.v.R | 14 +- R/crosstab.R | 22 ++- R/descript.R | 16 +- R/df.merge.R | 6 R/df.rename.R | 2 R/df.sort.R | 4 R/dummy.c.R | 10 + R/eta.sq.R | 12 + R/freq.R | 36 +++-- R/group.scores.R | 14 +- R/kurtosis.R | 10 + R/levenes.test.R | 81 ++++++++----- R/multilevel.descript.R | 14 +- R/multilevel.icc.R | 12 + R/na.as.R | 10 + R/na.auxiliary.R | 16 +- R/na.coverage.R | 12 + R/na.descript.R | 14 +- R/na.indicator.R | 8 + R/na.pattern.R | 14 +- R/na.prop.R | 10 + R/omega.coef.R | 48 ++++--- R/phi.coef.R | 14 +- R/poly.cor.R | 22 ++- R/print.ci.R | 58 +++++++-- R/print.coef.R | 8 - R/print.cohens.d.R | 8 - R/print.crosstab.R | 26 ++-- R/print.descript.R | 2 R/print.freq.R | 14 +- R/print.na.descript.R | 2 R/print.na.pattern.R | 2 R/print.size.R | 155 ++++++++++++------------- R/print.test.R | 240 ++++++++++++++++++++++++++++++++++++--- R/read.mplus.R | 2 R/read.sav.R | 8 - R/read.xlsx.R | 6 R/rec.R | 14 +- R/reverse.item.R | 12 + R/rwg.lindell.R | 14 +- R/scores.R | 12 + R/size.cor.R | 10 - R/size.mean.R | 47 +++---- R/size.prop.R | 16 +- R/skewness.R | 10 + R/stromit.R | 12 + R/trim.R | 8 + R/write.mplus.R | 2 R/write.sav.R | 6 R/z.test.R |only build/vignette.rds |binary inst/doc/misty.ltx | 135 +++++++++++++++------ inst/doc/misty.pdf |binary man/ci.mean.Rd | 15 +- man/ci.mean.diff.Rd | 70 +++++------ man/ci.median.Rd | 7 - man/ci.prop.Rd | 8 - man/ci.prop.diff.Rd | 30 ++-- man/ci.sd.Rd | 8 - man/ci.var.Rd | 8 - man/cohens.d.Rd | 8 - man/cont.coef.Rd | 4 man/cramers.v.Rd | 4 man/levenes.test.Rd | 28 ++-- man/omega.coef.Rd | 3 man/print.cor.matrix.Rd | 3 man/print.crosstab.Rd | 4 man/print.descript.Rd | 4 man/print.multilevel.descript.Rd | 3 man/print.na.descript.Rd | 3 man/print.na.pattern.Rd | 3 man/print.size.Rd | 118 +++++++++---------- man/print.square.matrix.Rd | 3 man/print.test.Rd | 3 man/size.mean.Rd | 22 +-- man/z.test.Rd |only vignettes/misty.ltx | 135 +++++++++++++++------ 94 files changed, 1550 insertions(+), 811 deletions(-)
Title: Configurable Function for Solving Families of Nonlinear
Equations
Description: This is designed for use with an arbitrary set of equations with
an arbitrary set of unknowns.
The user selects "fixed" values for enough unknowns to leave as many variables as
there are equations, which in most cases means the system is properly
defined and a unique solution exists. The function, the fixed values
and initial values for the remaining unknowns are fed to a nonlinear backsolver.
The original version of "TK!Solver" , now a product of Universal Technical Systems (<https://www.uts.com>) was the inspiration for this function.
Author: Carl Witthoft
Maintainer: Carl Witthoft <carl@witthoft.com>
Diff between ktsolve versions 1.2 dated 2019-07-28 and 1.3 dated 2020-04-25
ChangeLog | 1 DESCRIPTION | 10 ++++---- MD5 | 10 ++++---- R/ktsolve.R | 56 +++++++++++++++++++++++++------------------------ man/ktsolve-package.Rd | 6 ++--- man/ktsolve.Rd | 10 ++++---- 6 files changed, 48 insertions(+), 45 deletions(-)
Title: Scroll Back to Top Icon in R Markdown and Shiny
Description: Add a scroll back to top 'Font Awesome' icon in R Markdown documents and Shiny apps using 'jQuery GoTop'.
Author: Félix Luginbuhl [aut, cre]
Maintainer: Félix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between gotop versions 0.1.0 dated 2020-04-14 and 0.1.1 dated 2020-04-25
gotop-0.1.0/gotop/inst/htmlwidgets/jquery.gotop.min.js |only gotop-0.1.1/gotop/DESCRIPTION | 8 +-- gotop-0.1.1/gotop/MD5 | 26 ++++++++--- gotop-0.1.1/gotop/NAMESPACE | 1 gotop-0.1.1/gotop/R/gotop.R | 40 +++++++++++------ gotop-0.1.1/gotop/README.md | 26 ++++------- gotop-0.1.1/gotop/inst/htmlwidgets/fontawesome-5.1.0 |only 7 files changed, 63 insertions(+), 38 deletions(-)
Title: Check-Fields and Check-Boxes for 'rmarkdown'
Description: Creates auto checking check-fields and check-boxes for 'rmarkdown' html. It could be used in class, when teacher share materials and tasks, so student can solve some problems and check themselves. In contrast with the 'learnr' package the 'checkdown' package works without 'shiny'.
Author: George Moroz
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between checkdown versions 0.0.3 dated 2020-04-03 and 0.0.4 dated 2020-04-25
DESCRIPTION | 6 - MD5 | 26 ++++--- NAMESPACE | 2 NEWS | 6 + R/check_hint.R | 23 +++--- R/check_hints.R |only R/check_question.R | 25 ++++--- R/insert_images.R |only inst/doc/start_checkdown.R | 29 +++++++- inst/doc/start_checkdown.Rmd | 45 +++++++++++- inst/doc/start_checkdown.html | 148 ++++++++++++++++++++++++------------------ man/check_hint.Rd | 7 + man/check_hints.Rd |only man/check_question.Rd | 3 man/insert_images.Rd |only vignettes/start_checkdown.Rmd | 45 +++++++++++- 16 files changed, 258 insertions(+), 107 deletions(-)
Title: Plotting Methods for 'simmer'
Description: A set of plotting methods for 'simmer' trajectories and simulations.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>),
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between simmer.plot versions 0.1.15 dated 2019-03-10 and 0.1.16 dated 2020-04-25
DESCRIPTION | 8 +- MD5 | 24 +++---- NEWS.md | 6 + R/plot.resources.R | 2 R/plot.trajectory.R | 17 ++++- build/vignette.rds |binary inst/doc/plot.simmer.R | 12 +-- inst/doc/plot.simmer.html | 104 +++++++++++++++++----------------- inst/doc/plot.trajectory.R | 6 - inst/doc/plot.trajectory.html | 92 +++++++++++++++--------------- man/plot.mon.Rd | 6 - man/plot.simmer.Rd | 3 tests/testthat/test-plot-trajectory.R | 2 13 files changed, 152 insertions(+), 130 deletions(-)
Title: Utilities for Nonlinear Regression and Repeated Measurements
Models
Description: A toolkit of functions for nonlinear regression and repeated
measurements not to be used by itself but called by other Lindsey packages such
as 'gnlm', 'stable', 'growth', 'repeated', and 'event'
(available at <http://www.commanster.eu/rcode.html>).
Author: Bruce Swihart [cre, aut],
Jim Lindsey [aut] (Jim created this package, Bruce is maintaining the
CRAN version)
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Diff between rmutil versions 1.1.3 dated 2019-03-04 and 1.1.4 dated 2020-04-25
DESCRIPTION | 6 - MD5 | 8 +- NEWS.md | 11 +++ R/objectrm.r | 4 - man/tvctomat.Rd | 180 ++++++++++++++++++++++++++++---------------------------- 5 files changed, 110 insertions(+), 99 deletions(-)
Title: Stan Models for the Paired Comparison Factor Model
Description: Provides convenience functions and pre-programmed
Stan models related to the paired comparison factor model. Its purpose
is to make fitting paired comparison data using Stan easy.
Author: Joshua N. Pritikin [aut, cre] (<https://orcid.org/0000-0002-9862-5484>),
Daniel C. Furr [ctb],
Trustees of Columbia University [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between pcFactorStan versions 1.4.0 dated 2020-02-17 and 1.5.1 dated 2020-04-25
pcFactorStan-1.4.0/pcFactorStan/src/stan_files/functions/cmp_prob1.stan |only pcFactorStan-1.4.0/pcFactorStan/src/stan_files/functions/cmp_prob2.stan |only pcFactorStan-1.5.1/pcFactorStan/DESCRIPTION | 46 pcFactorStan-1.5.1/pcFactorStan/MD5 | 95 - pcFactorStan-1.5.1/pcFactorStan/NAMESPACE | 5 pcFactorStan-1.5.1/pcFactorStan/R/apps.R | 3 pcFactorStan-1.5.1/pcFactorStan/R/fit.R | 158 +- pcFactorStan-1.5.1/pcFactorStan/R/generate.R | 128 + pcFactorStan-1.5.1/pcFactorStan/R/package.R | 5 pcFactorStan-1.5.1/pcFactorStan/build/vignette.rds |binary pcFactorStan-1.5.1/pcFactorStan/inst/doc/manual.R | 109 - pcFactorStan-1.5.1/pcFactorStan/inst/doc/manual.Rmd | 334 ++-- pcFactorStan-1.5.1/pcFactorStan/inst/doc/manual.html | 685 +++------- pcFactorStan-1.5.1/pcFactorStan/inst/itemModelExplorer/global.R | 2 pcFactorStan-1.5.1/pcFactorStan/inst/itemModelExplorer/server.R | 40 pcFactorStan-1.5.1/pcFactorStan/inst/itemModelExplorer/ui.R | 6 pcFactorStan-1.5.1/pcFactorStan/man/calibrateItems.Rd | 4 pcFactorStan-1.5.1/pcFactorStan/man/cmp_probs.Rd |only pcFactorStan-1.5.1/pcFactorStan/man/figures |only pcFactorStan-1.5.1/pcFactorStan/man/findModel.Rd | 4 pcFactorStan-1.5.1/pcFactorStan/man/generateCovItems.Rd | 43 pcFactorStan-1.5.1/pcFactorStan/man/generateFactorItems.Rd | 58 pcFactorStan-1.5.1/pcFactorStan/man/generateItem.Rd | 43 pcFactorStan-1.5.1/pcFactorStan/man/generateSingleFactorItems.Rd | 44 pcFactorStan-1.5.1/pcFactorStan/man/itemModelExplorer.Rd | 43 pcFactorStan-1.5.1/pcFactorStan/man/pcStan.Rd | 2 pcFactorStan-1.5.1/pcFactorStan/man/prepFactorModel.Rd | 33 pcFactorStan-1.5.1/pcFactorStan/man/prepSingleFactorModel.Rd | 6 pcFactorStan-1.5.1/pcFactorStan/man/responseCurve.Rd | 47 pcFactorStan-1.5.1/pcFactorStan/man/withoutIndex.Rd | 2 pcFactorStan-1.5.1/pcFactorStan/src/stan_files/correlation.stan | 71 - pcFactorStan-1.5.1/pcFactorStan/src/stan_files/correlation_ll.stan | 102 - pcFactorStan-1.5.1/pcFactorStan/src/stan_files/factor.stan | 173 +- pcFactorStan-1.5.1/pcFactorStan/src/stan_files/factor1.stan | 153 +- pcFactorStan-1.5.1/pcFactorStan/src/stan_files/factor1_ll.stan | 184 +- pcFactorStan-1.5.1/pcFactorStan/src/stan_files/factor_ll.stan | 204 +- pcFactorStan-1.5.1/pcFactorStan/src/stan_files/functions/pairwise.stan |only pcFactorStan-1.5.1/pcFactorStan/src/stan_files/unidim.stan | 54 pcFactorStan-1.5.1/pcFactorStan/src/stan_files/unidim_adapt.stan | 54 pcFactorStan-1.5.1/pcFactorStan/src/stan_files/unidim_ll.stan | 79 - pcFactorStan-1.5.1/pcFactorStan/tests/testthat/test-2generate.R | 24 pcFactorStan-1.5.1/pcFactorStan/tests/testthat/test-3data.R | 60 pcFactorStan-1.5.1/pcFactorStan/tests/testthat/test-4likelihood.R | 28 pcFactorStan-1.5.1/pcFactorStan/tests/testthat/test-5loo.R | 34 pcFactorStan-1.5.1/pcFactorStan/tests/testthat/test-7report.R | 20 pcFactorStan-1.5.1/pcFactorStan/tools/genStan | 430 +++--- pcFactorStan-1.5.1/pcFactorStan/vignettes/manual.Rmd | 334 ++-- 47 files changed, 1820 insertions(+), 2129 deletions(-)
Title: Multivariate Functional Principal Component Analysis for Data
Observed on Different Dimensional Domains
Description: Calculate a multivariate functional principal component analysis
for data observed on different dimensional domains. The estimation algorithm
relies on univariate basis expansions for each element of the multivariate
functional data (Happ & Greven, 2018) <doi:10.1080/01621459.2016.1273115>.
Multivariate and univariate functional data objects are
represented by S4 classes for this type of data implemented in the package
'funData'. For more details on the general concepts of both packages and a case
study, see Happ-Kurz (2020) <doi:10.18637/jss.v093.i05>.
Author: Clara Happ-Kurz [aut, cre] (<https://orcid.org/0000-0003-4737-3835>)
Maintainer: Clara Happ-Kurz <clara.happ@stat.uni-muenchen.de>
Diff between MFPCA versions 1.3-4 dated 2020-01-08 and 1.3-5 dated 2020-04-25
DESCRIPTION | 16 +++++++++------- MD5 | 41 +++++++++++++++++++++-------------------- NEWS.md | 7 +++++++ R/MFPCA_calculation.R | 6 +++++- R/univDecomp.R | 3 --- R/univariateExpansions.R | 2 -- README.md | 5 +++++ build/partial.rdb |binary configure.ac | 2 +- inst/CITATION | 4 ++-- man/FCP_TPA.Rd | 12 ++++++++++-- man/MFPCA.Rd | 32 +++++++++++++++++++++++--------- man/PACE.Rd | 11 +++++++++-- man/calcMFPCA.Rd | 15 +++++++++++++-- man/dot-PACE.Rd |only man/fcptpaBasis.Rd | 10 ++++++++-- man/fpcaBasis.Rd | 12 +++++++++--- man/plot.MFPCAfit.Rd | 9 +++++++-- man/screeplot.MFPCAfit.Rd | 10 ++++++++-- man/splineBasis1D.Rd | 3 +-- man/splineBasis2D.Rd | 3 +-- man/univExpansion.Rd | 9 +++++++-- 22 files changed, 146 insertions(+), 66 deletions(-)
Title: Interact with the 'Python' Module 'Featuretools'
Description: A 'reticulate'-based interface to the 'Python' module 'Featuretools'.
The package grants functionality to interact with 'Pythons' 'Featuretools' module, which allows
for automated feature engineering on any data frame. Valid features and new data sets can, after
feature synthesis, easily be extracted.
Author: Magnus Furugård [aut, cre]
Maintainer: Magnus Furugård <magnus.furugard@gmail.com>
Diff between featuretoolsR versions 0.4.3 dated 2019-08-07 and 0.4.4 dated 2020-04-25
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 16 ++++++++-------- R/add_relationship.R | 9 +++++++-- R/install_featuretools.R | 30 +++++++++++++++++++++++++++--- R/zzz.R | 18 ++++++++++++------ README.md | 10 +++++++--- man/install_featuretools.Rd | 2 +- tests/testthat/test_main.R | 15 +++++++++++++++ 9 files changed, 82 insertions(+), 28 deletions(-)
Title: Functions for Common Chart Types
Description: Wrapper for the 'ggplot2' package that creates a variety of common
charts (e.g. bar, line, area, ROC, waterfall, pie) while aiming to reduce
typing.
Author: Wojtek Kostelecki
Maintainer: Wojtek Kostelecki <wojtek.kostelecki@gmail.com>
Diff between ezplot versions 0.4.0 dated 2020-03-29 and 0.4.1 dated 2020-04-25
DESCRIPTION | 6 ++-- MD5 | 44 +++++++++++++++--------------- NEWS.md | 3 ++ R/area_plot.R | 6 ++-- R/bar_plot.R | 6 ++-- R/side_plot.R | 6 ++-- R/variable_plot.R | 2 + README.md | 2 - inst/doc/basics.html | 4 +- inst/doc/overview.html | 2 - man/figures/README-area_plot-1-1.png |binary man/figures/README-area_plot-2-1.png |binary man/figures/README-bar_plot-1-1.png |binary man/figures/README-bar_plot-2-1.png |binary man/figures/README-bar_plot-3-1.png |binary man/figures/README-line_plot-1-1.png |binary man/figures/README-line_plot-2-1.png |binary man/figures/README-line_plot-3-1.png |binary man/figures/README-line_plot-5-1.png |binary man/figures/README-line_plot4-1.png |binary man/figures/README-tile_plot-1-1.png |binary man/figures/README-tile_plot-2-1.png |binary man/figures/README-waterfall_plot-1-1.png |binary 23 files changed, 45 insertions(+), 36 deletions(-)
Title: Algorithm to Compute Monitor Independent Movement Summary Unit
(MIMS-Unit)
Description: The MIMS-unit algorithm is developed to compute Monitor Independent
Movement Summary Unit, a measurement to summarize raw accelerometer data
while ensuring harmonized results across different devices. It also includes
scripts to reproduce results in the related publication
(John, D., Tang. Q., Albinali, F. and Intille, S. (2019) <doi:10.1123/jmpb.2018-0068>).
Author: Qu Tang [aut, cre] (<https://orcid.org/0000-0001-5415-0205>),
Dinesh John [aut],
Stephen Intille [aut],
mHealth Research Group [cph] (https://mhealthgroup.org)
Maintainer: Qu Tang <tang.q@northeastern.edu>
Diff between MIMSunit versions 0.8.2 dated 2020-03-02 and 0.9.0 dated 2020-04-25
DESCRIPTION | 14 ++++++------ MD5 | 30 +++++++++++++------------- NEWS.md | 39 ++++++++++++++++++++++++++-------- R/extrapolate.R | 2 - R/import_data.R | 20 ++++++++++++++++- R/mims_unit.R | 23 +++++++++++++++----- README.md | 32 +++++++++++++++------------ man/conceptual_diagram_data.Rd | 6 +++-- man/cv_different_algorithms.Rd | 6 +++-- man/edge_case.Rd | 6 +++-- man/extrapolate.Rd | 2 - man/import_actigraph_csv.Rd | 9 +++++++ man/measurements_different_devices.Rd | 6 +++-- man/mims_unit.Rd | 3 +- man/rest_on_table.Rd | 6 +++-- man/sample_raw_accel_data.Rd | 6 +++-- 16 files changed, 144 insertions(+), 66 deletions(-)
Title: See a Forest for the Trees
Description: Getting insight into a forest of classification trees, by calculating similarities between the trees, and subsequently clustering them. Each cluster is represented by it's most central cluster member. The package implements the methodology described in Sies & Van Mechelen (2020). Sies, A., & Van Mechelen, I. (2020). C443: A methodology to see a forest for the trees. Journal of Classification. <doi:10.1007/s00357-019-09350-4>.
Author: Aniek Sies [aut, cre],
Iven Van Mechelen [ths]
Maintainer: Aniek Sies <aniek.sies@kuleuven.be>
Diff between C443 versions 1.0.0 dated 2018-04-20 and 2.0.0 dated 2020-04-25
C443-1.0.0/C443/R/C443-internal.R |only C443-1.0.0/C443/R/clustering.R |only C443-1.0.0/C443/R/empirical_equivalence.R |only C443-1.0.0/C443/R/growforest.R |only C443-1.0.0/C443/R/matching_source.R |only C443-1.0.0/C443/R/similarities.R |only C443-1.0.0/C443/man/emp_eq.Rd |only C443-1.0.0/C443/man/growforest.Rd |only C443-1.0.0/C443/man/similarities.Rd |only C443-2.0.0/C443/DESCRIPTION | 17 +-- C443-2.0.0/C443/MD5 | 44 +++++-- C443-2.0.0/C443/NAMESPACE | 107 ++++++++++-------- C443-2.0.0/C443/R/ClusterForest.R |only C443-2.0.0/C443/R/Similarities.R |only C443-2.0.0/C443/R/SimilaritiesMethods.R |only C443-2.0.0/C443/R/clusterMethods.R |only C443-2.0.0/C443/R/drugs.R | 14 +- C443-2.0.0/C443/R/forestObject.R |only C443-2.0.0/C443/R/methodsForest.R |only C443-2.0.0/C443/R/treesourceClusterMethod.R |only C443-2.0.0/C443/man/as.treesimilarities.Rd |only C443-2.0.0/C443/man/as.treesimilarities.list.Rd |only C443-2.0.0/C443/man/clusterforest.Rd | 136 +++++++++++++----------- C443-2.0.0/C443/man/drugs.Rd | 121 ++++++++++----------- C443-2.0.0/C443/man/forest.Rd |only C443-2.0.0/C443/man/plot.clusterforest.Rd |only C443-2.0.0/C443/man/plot.forest.Rd |only C443-2.0.0/C443/man/plot.treesimilarities.Rd |only C443-2.0.0/C443/man/predict.forest.Rd |only C443-2.0.0/C443/man/print.clusterforest.Rd |only C443-2.0.0/C443/man/print.forest.Rd |only C443-2.0.0/C443/man/print.treesimilarities.Rd |only C443-2.0.0/C443/man/summary.clusterforest.Rd |only C443-2.0.0/C443/man/summary.forest.Rd |only C443-2.0.0/C443/man/summary.treesimilarities.Rd |only C443-2.0.0/C443/man/treesimilarities.Rd |only C443-2.0.0/C443/man/treesource.Rd | 90 +++++++++++---- C443-2.0.0/C443/man/treesource.clusterforest.Rd |only C443-2.0.0/C443/man/treesource.default.Rd |only 39 files changed, 300 insertions(+), 229 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-19 3.1
Title: Analysis of Circadian Behaviours
Description: Use behavioural variables to compute period, rhythmicity and other circadian parameters.
Methods include computation of chi square periodograms (Sokolove and Bushell (1978) <DOI:10.1016/0022-5193(78)90022-X>),
Lomb-Scargle periodograms (Lomb (1976) <DOI:10.1007/BF00648343>, Scargle (1982) <DOI:10.1086/160554>, Ruf (1999) <DOI:10.1076/brhm.30.2.178.1422>),
and autocorrelation-based periodograms.
Author: Quentin Geissmann [aut, cre],
Luis Garcia [aut]
Maintainer: Quentin Geissmann <qgeissmann@gmail.com>
Diff between zeitgebr versions 0.3.3 dated 2018-06-23 and 0.3.5 dated 2020-04-25
DESCRIPTION | 14 +++++++------- MD5 | 26 ++++++++++++++++---------- NAMESPACE | 3 +++ R/aab-periodogram-methods.R | 1 + R/cwt-periodogram.R |only R/cwt-spectrogram.R |only R/find-peaks.R | 4 ++-- R/periodogram.R | 31 ++++++++++++++++++++----------- R/spectrogram.R |only README.md | 2 +- man/cwt_spectrogram.Rd |only man/find_peaks.Rd | 4 ++-- man/periodogram.Rd | 7 ++++--- man/periodogram_methods.Rd | 16 ++++++++++++++-- man/spectrogram.Rd |only tests/testthat/test-cwt_periodogram.R |only tests/testthat/test-periodogram.R | 26 ++++++++++++++++++++++++-- 17 files changed, 94 insertions(+), 40 deletions(-)
Title: Fitting Semi-Parametric Generalized log-Gamma Regression Models
Description: Set of tools to fit a linear multiple or semi-parametric regression
models and non-informative right-censoring may be considered. Under this setup, the localization parameter of the response variable distribution is modeled by using linear multiple regression
or semi-parametric functions, whose non-parametric components may be approximated
by natural cubic spline or P-splines. The supported distribution for the model error is a generalized log-gamma distribution which includes
the generalized extreme value distribution as important special case.
Author: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com> and G. Paula and L. Vanegas
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between sglg versions 0.1.5 dated 2019-07-19 and 0.1.6 dated 2020-04-25
DESCRIPTION | 14 +++++++------- MD5 | 30 ++++++++++++++++++------------ NAMESPACE | 5 ++++- R/deviance_residuals.R | 3 ++- R/dglg.R |only R/glg.R | 5 ++--- R/gnfit.R | 18 ++++++++++++------ R/order_glg.R | 5 +++-- R/pglg.R |only R/qglg.R |only R/quantile_residuals.R | 3 ++- R/sglg2.R | 4 +--- R/ssurvglg.R | 3 +-- R/survglg.R | 2 +- man/dglg.Rd |only man/gnfit.Rd | 11 ++++++++--- man/pglg.Rd |only man/qglg.Rd |only man/sglg.Rd | 14 ++++++++++++-- 19 files changed, 73 insertions(+), 44 deletions(-)
Title: Find Tools Needed to Build R Packages
Description: Provides functions used to build R packages. Locates compilers
needed to build R packages on various platforms and ensures the PATH is
configured appropriately so R can use them.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
RStudio [cph]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between pkgbuild versions 1.0.6 dated 2019-10-09 and 1.0.7 dated 2020-04-25
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/rtools.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm (Chalmers (2012) <doi:10.18637/jss.v048.i06>).
Exploratory and confirmatory models can be estimated with quadrature (EM)
or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item and test functioning as well as modeling
item and person covariates. Finally, latent class models such as the DINA,
DINO, multidimensional latent class, and several other discrete latent
variable models, including mixture and zero-inflated response models,
are supported.
Author: Phil Chalmers [aut, cre] (<https://orcid.org/0000-0001-5332-2810>),
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb],
Adam Meade [ctb],
Lennart Schneider [ctb],
David King [ctb],
Chen-Wei Liu [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.32 dated 2020-04-24 and 1.32.1 dated 2020-04-25
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 2 +- build/partial.rdb |binary src/Estep.cpp | 12 +++++++++--- 5 files changed, 17 insertions(+), 11 deletions(-)
Title: Tools for Biostatistics, Public Policy, and Law
Description: Statistical tests widely utilized in biostatistics, public policy, and law. Along with the well-known tests for equality of means and variances, randomness, and measures of relative variability, the package contains new robust tests of symmetry, omnibus and directional tests of normality, and their graphical counterparts such as robust QQ plot, robust trend tests for variances, etc. All implemented tests and methods are illustrated by simulations and real-life examples from legal statistics, economics, and biostatistics.
Author: Joseph L. Gastwirth [aut],
Yulia R. Gel [aut],
W. L. Wallace Hui [aut],
Vyacheslav Lyubchich [aut, cre]
(<https://orcid.org/0000-0001-7936-4285>),
Weiwen Miao [aut],
Kimihiro Noguchi [aut]
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>
Diff between lawstat versions 3.3 dated 2019-04-01 and 3.4 dated 2020-04-25
DESCRIPTION | 18 ++++++----- MD5 | 65 +++++++++++++++++++++--------------------- NAMESPACE | 1 R/bias.R | 4 +- R/brunner.munzel.test.R | 4 +- R/cmh.test.R | 2 - R/laplace.test.R | 5 ++- R/lawstat.R | 1 R/lnested.test.R | 2 - R/neuhauser.hothorn.test.R | 2 - R/vgam_extract.R |only build/partial.rdb |binary inst/REFERENCES.bib | 8 +++++ man/bartels.test.Rd | 6 ++- man/bias.Rd | 8 +++-- man/blackhire.Rd | 4 +- man/brunner.munzel.test.Rd | 12 +++++-- man/cmh.test.Rd | 2 - man/data1963.Rd | 6 ++- man/laplace.test.Rd | 5 +++ man/levene.test.Rd | 14 ++++++--- man/lnested.test.Rd | 19 +++++++----- man/lorenz.curve.Rd | 15 +++++++-- man/ltrend.test.Rd | 18 +++++++---- man/michigan.Rd | 4 +- man/neuhauser.hothorn.test.Rd | 17 +++++++--- man/nig.parameter.Rd | 8 +++-- man/popdata.Rd | 6 ++- man/pot.Rd | 6 ++- man/rjb.test.Rd | 8 +++-- man/rqq.Rd | 18 +++++++++-- man/runs.test.Rd | 7 +++- man/symmetry.test.Rd | 10 +++++- man/zuni.Rd | 6 ++- 34 files changed, 203 insertions(+), 108 deletions(-)
Title: An S4 Class for Functional Data
Description: S4 classes for univariate and multivariate functional data with
utility functions. See <doi:10.18637/jss.v093.i05> for a detailed description
of the package functionalities and its interplay with the MFPCA package for
multivariate functional principal component analysis
<https://CRAN.R-project.org/package=MFPCA>.
Author: Clara Happ-Kurz [aut, cre]
Maintainer: Clara Happ-Kurz <clara.happ@stat.uni-muenchen.de>
Diff between funData versions 1.3-4 dated 2019-12-18 and 1.3-5 dated 2020-04-25
DESCRIPTION | 15 +++++++++------ MD5 | 7 ++++--- NEWS.md | 5 +++++ README.md | 7 +++++++ inst |only 5 files changed, 25 insertions(+), 9 deletions(-)
Title: moDel Agnostic Language for Exploration and eXplanation
Description: Unverified black box model is the path to the failure. Opaqueness leads to distrust.
Distrust leads to ignoration. Ignoration leads to rejection.
DALEX package xrays any model and helps to explore and explain its behaviour.
Machine Learning (ML) models are widely used and have various applications in classification
or regression. Models created with boosting, bagging, stacking or similar techniques are often
used due to their high performance. But such black-box models usually lack of direct interpretability.
DALEX package contains various methods that help to understand the link between input variables
and model output. Implemented methods help to explore model on the level of a single instance
as well as a level of the whole dataset.
All model explainers are model agnostic and can be compared across different models.
DALEX package is the cornerstone for 'DrWhy.AI' universe of packages for visual model exploration.
Find more details in (Biecek 2018) <arXiv:1806.08915>.
Author: Przemyslaw Biecek [aut, cre] (<https://orcid.org/0000-0001-8423-1823>),
Szymon Maksymiuk [aut],
Hubert Baniecki [aut] (<https://orcid.org/0000-0001-6661-5364>)
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between DALEX versions 1.2.0 dated 2020-04-22 and 1.2.1 dated 2020-04-25
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/data_fifa.R | 26 ++++++++++++++++++++++++-- data/fifa.rda |binary man/fifa.Rd | 5 +++-- tests/testthat/test_yhat_model_info.R | 8 ++++++-- 6 files changed, 41 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-28 0.5.4
2018-01-12 0.5.3
2017-10-11 0.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-15 1.8.6
2019-04-24 1.8.5
2018-12-19 1.8.4
2018-10-09 1.8.1
2017-04-06 1.7.6
2016-09-13 1.7.5
2016-03-17 1.7.3
2016-02-22 1.7.1
2015-12-24 1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-31 2.3
2016-06-13 2.2
2016-05-28 2.1
2016-03-20 2.0
2015-07-02 1.0.1
2015-02-27 0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-30 0.15.7
2019-03-13 0.15.6
2019-03-11 0.15.5
2018-10-24 0.15.4
2018-08-23 0.15.3
2018-08-17 0.15.2
2018-08-16 0.15.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-18 0.3.8
2017-09-27 0.3.7
2017-07-21 0.3.6
2016-11-29 0.3.5
2016-11-15 0.3.4
2016-09-26 0.3.3.1
2016-07-27 0.3.3
2016-06-13 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-17 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-02 0.3.5
2019-05-20 0.3.4
2018-01-03 0.3.2
2017-09-28 0.3.1
2016-06-13 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-02 0.3.3
2020-01-16 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-13 1.6.2
2018-04-22 1.6.0
2014-07-02 1.4.8
2014-03-20 1.3.8
2013-11-02 1.2.1
2013-06-08 1.0.6
2013-06-01 1.0.2
2013-02-24 0.9.4
Title: Collecting Social Media Data and Generating Networks for
Analysis
Description: A suite of tools for collecting and constructing networks from social media data.
Provides easy-to-use functions for collecting data across popular platforms (Twitter, YouTube
and Reddit) and generating different types of networks for analysis.
Author: Timothy Graham, Robert Ackland, Chung-hong Chan, Bryan Gertzel
Maintainer: Bryan Gertzel <bryan.gertzel@anu.edu.au>
Diff between vosonSML versions 0.29.4 dated 2019-11-23 and 0.29.10 dated 2020-04-25
DESCRIPTION | 20 MD5 | 116 +-- NAMESPACE | 12 NEWS.md | 74 +- R/AddText.R | 24 R/AddUserData.R | 5 R/Authenticate.twitter.R | 5 R/Authenticate.youtube.R | 4 R/Collect.R | 7 R/Collect.reddit.R | 262 +++++++ R/Collect.twitter.R | 29 R/Collect.youtube.R | 220 +++--- R/Create.R | 6 R/Create.activity.reddit.R | 15 R/Create.activity.twitter.R | 4 R/Create.activity.youtube.R | 7 R/Create.actor.reddit.R | 7 R/Create.actor.youtube.R | 3 R/Create.semantic.twitter.R | 434 +++++------- R/Create.twomode.twitter.R | 144 +--- R/Graph.R | 29 R/ImportData.R | 54 - R/Utils.reddit.R | 36 + R/Utils.twitter.R | 6 R/vosonSML-package.R | 51 - README.md | 587 ++++++++++++----- build |only inst |only man/Authenticate.Rd | 2 man/Authenticate.reddit.Rd | 2 man/Authenticate.twitter.Rd | 2 man/Authenticate.youtube.Rd | 2 man/Collect.Rd | 2 man/Collect.reddit.Rd | 22 man/Collect.twitter.Rd | 2 man/Collect.youtube.Rd | 144 ++-- man/Create.Rd | 2 man/Create.activity.reddit.Rd | 2 man/Create.activity.twitter.Rd | 2 man/Create.activity.youtube.Rd | 2 man/Create.actor.reddit.Rd | 2 man/Create.actor.twitter.Rd | 2 man/Create.actor.youtube.Rd | 2 man/Create.semantic.twitter.Rd | 66 + man/Create.twomode.twitter.Rd | 23 man/vosonSML-colon-colon-AddText.Rd | 2 man/vosonSML-colon-colon-AddText.activity.reddit.Rd | 6 man/vosonSML-colon-colon-AddText.actor.reddit.Rd | 6 man/vosonSML-colon-colon-AddText.actor.youtube.Rd | 10 man/vosonSML-colon-colon-AddUserData.Rd | 2 man/vosonSML-colon-colon-AddVideoData.Rd | 2 man/vosonSML-colon-colon-AddVideoData.actor.youtube.Rd | 2 man/vosonSML-colon-colon-GetYoutubeVideoIDs.Rd | 2 man/vosonSML-colon-colon-Graph.Rd | 2 man/vosonSML-colon-colon-ImportData.Rd | 48 - man/vosonSML-package.Rd | 26 tests |only vignettes |only 58 files changed, 1610 insertions(+), 940 deletions(-)
Title: Visualisation Toolbox for 'easystats' and Extra Geoms, Themes
and Color Palettes for 'ggplot2'
Description: Provides plotting utilities supporting easystats-packages (<https://github.com/easystats/easystats>)
and some extra themes, geoms, and scales for 'ggplot2'. Color scales are
based on <https://www.materialui.co/colors>.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, inv] (<https://orcid.org/0000-0001-5375-9967>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between see versions 0.4.1 dated 2020-03-06 and 0.5.0 dated 2020-04-25
DESCRIPTION | 8 MD5 | 41 +- NAMESPACE | 14 NEWS.md | 22 + R/data_plot.R | 53 -- R/golden_ratio.R |only R/plot.describe_distribution.R |only R/plot.easycormatrix.R |only R/plot.easycorrelation.R | 66 +-- R/plot.effectsize_table.R |only R/plot.equivalence_test.R | 194 +++++++++- R/plot.estimate_density.R | 58 +++ R/plot.parameters_model.R | 2 R/plot.parameters_sem.R | 72 ++- R/print.binned_residuals.R | 3 R/print.check_model.R | 2 R/print.data_plot.R |only R/reshape_to_long.R | 6 R/utils.R | 31 + man/data_plot.Rd | 764 ++++++++++++++++++++--------------------- man/dot-es_names.Rd |only man/ggplot2-ggproto.Rd | 18 man/golden_ratio.Rd |only man/pizza_colors.Rd | 32 - man/reexports.Rd | 30 - 25 files changed, 841 insertions(+), 575 deletions(-)
Title: Analysis of Heavy Tailed Distributions
Description: An implementation of maximum likelihood estimators
for a variety of heavy tailed distributions, including both the
discrete and continuous power law distributions. Additionally, a
goodness-of-fit based approach is used to estimate the lower cut-off
for the scaling region.
Author: Colin Gillespie [aut, cre] (<https://orcid.org/0000-0003-1787-0275>)
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between poweRlaw versions 0.70.5 dated 2020-04-23 and 0.70.6 dated 2020-04-25
DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++------------ NEWS.md | 5 +++++ inst/doc/a_introduction.Rnw | 5 ++--- inst/doc/a_introduction.pdf |binary inst/doc/b_powerlaw_examples.Rnw | 2 +- inst/doc/b_powerlaw_examples.pdf |binary inst/doc/c_comparing_distributions.Rnw | 5 ++--- inst/doc/c_comparing_distributions.pdf |binary inst/doc/d_jss_paper.pdf |binary vignettes/a_introduction-concordance.tex |only vignettes/a_introduction.Rnw | 5 ++--- vignettes/b_powerlaw_examples.Rnw | 2 +- vignettes/c_comparing_distributions.Rnw | 5 ++--- 14 files changed, 32 insertions(+), 30 deletions(-)
Title: Identification of the Most Influential Nodes
Description: Contains functions for reconstruction of networks from
adjacency matrices and data frames, analysis of the topology of the network
and calculation of centrality measures, and identification of the most
influential nodes. Also, some functions have been provided for the assessment
of dependence and correlation of two network centrality measures as well as
the conditional probability of deviation from their corresponding means in opposite direction.
Fred Viole and David Nawrocki (2013, ISBN:1490523995).
Csardi G, Nepusz T (2006). "The igraph software package for complex network research." InterJournal, Complex Systems, 1695.
Adopted algorithms and sources are referenced in function document.
Author: Adrian (Abbas) Salavaty
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 0.1.0 dated 2020-02-17 and 1.0.0 dated 2020-04-25
influential-0.1.0/influential/man/ihs.Rd |only influential-1.0.0/influential/DESCRIPTION | 19 influential-1.0.0/influential/MD5 | 47 influential-1.0.0/influential/NAMESPACE | 15 influential-1.0.0/influential/NEWS.md |only influential-1.0.0/influential/R/data.R | 13 influential-1.0.0/influential/R/functions.R | 953 +++++++++- influential-1.0.0/influential/README.md | 70 influential-1.0.0/influential/data/centrality.measures.rda |binary influential-1.0.0/influential/inst/CITATION |only influential-1.0.0/influential/inst/doc/Vignettes.R | 198 +- influential-1.0.0/influential/inst/doc/Vignettes.Rmd | 237 ++ influential-1.0.0/influential/inst/doc/Vignettes.html | 428 +++- influential-1.0.0/influential/man/betweenness.Rd | 4 influential-1.0.0/influential/man/centrality.measures.Rd | 13 influential-1.0.0/influential/man/clusterrank.Rd |only influential-1.0.0/influential/man/collective.influence.Rd |only influential-1.0.0/influential/man/cond.prob.analysis.Rd | 6 influential-1.0.0/influential/man/degree.Rd | 4 influential-1.0.0/influential/man/double.cent.assess.Rd | 36 influential-1.0.0/influential/man/double.cent.assess.noRegression.Rd | 30 influential-1.0.0/influential/man/h_index.Rd |only influential-1.0.0/influential/man/hubness.score.Rd |only influential-1.0.0/influential/man/influential-package.Rd |only influential-1.0.0/influential/man/ivi.Rd |only influential-1.0.0/influential/man/ivi.from.indices.Rd |only influential-1.0.0/influential/man/lh_index.Rd |only influential-1.0.0/influential/man/neighborhood.connectivity.Rd | 11 influential-1.0.0/influential/man/sirir.Rd |only influential-1.0.0/influential/man/spreading.score.Rd |only influential-1.0.0/influential/vignettes/Vignettes.Rmd | 237 ++ 31 files changed, 1876 insertions(+), 445 deletions(-)
Title: Summarize and Explore the Data
Description: Exploratory analysis on any input data describing the structure and the relationships present in the data. The package automatically select the variable and does related descriptive statistics. Analyzing information value, weight of evidence, custom tables, summary statistics, graphical techniques will be performed for both numeric and categorical predictors.
Author: Dayanand Ubrangala [aut, cre],
Kiran R [aut, ctb],
Ravi Prasad Kondapalli [aut, ctb],
Sayan Putatunda [aut, ctb]
Maintainer: Dayanand Ubrangala <daya6489@gmail.com>
Diff between SmartEDA versions 0.3.4 dated 2020-04-01 and 0.3.5 dated 2020-04-25
DESCRIPTION | 6 - MD5 | 12 +-- NEWS.md | 11 +++ R/fn_Overview_data.R | 18 ++--- R/fn_exp_categorical.R | 5 - inst/doc/CustomTable.html | 76 +++++++++++------------ inst/doc/SmartEDA.html | 150 +++++++++++++++++++++++++++++++--------------- 7 files changed, 172 insertions(+), 106 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-15 1.2.4
2019-11-07 1.2.3
2019-02-04 1.2.2
2018-07-21 1.2.0
2018-06-17 1.1.0
Title: IRT Item-Person Map with 'ConQuest' Integration
Description: A powerful yet simple graphical tool available in the field of psychometrics is the Wright Map (also known as item maps or item-person maps), which presents the location of both respondents and items on the same scale. Wright Maps are commonly used to present the results of dichotomous or polytomous item response models. The 'WrightMap' package provides functions to create these plots from item parameters and person estimates stored as R objects. Although the package can be used in conjunction with any software used to estimate the IRT model (e.g. 'TAM', 'mirt', 'eRm' or 'IRToys' in 'R', or 'Stata', 'Mplus', etc.), 'WrightMap' features special integration with 'ConQuest' to facilitate reading and plotting its output directly.The 'wrightMap' function creates Wright Maps based on person estimates and item parameters produced by an item response analysis. The 'CQmodel' function reads output files created using 'ConQuest' software and creates a set of data frames for easy data manipulation, bundled in a 'CQmodel' object. The 'wrightMap' function can take a 'CQmodel' object as input or it can be used to create Wright Maps directly from data frames of person and item parameters.
Author: David Torres Irribarra & Rebecca Freund
Maintainer: David Torres Irribarra <david@torresirribarra.me>
Diff between WrightMap versions 1.2.2 dated 2020-02-06 and 1.2.3 dated 2020-04-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 4 ++++ R/itemModern.R | 4 ++-- README.md | 6 +++--- 5 files changed, 17 insertions(+), 13 deletions(-)
Title: Inferential Statistics
Description: Computation of various confidence intervals (Altman et al. (2000), ISBN:978-0-727-91375-3; Hedderich and Sachs (2018), ISBN:978-3-662-56657-2) including bootstrapped versions (Davison and Hinkley (1997), ISBN:978-0-511-80284-3) as well as Hsu (Hedderich and Sachs (2018), ISBN:978-3-662-56657-2), permutation (Janssen (1997), <doi:10.1016/S0167-7152(97)00043-6>), bootstrap (Davison and Hinkley (1997), ISBN:978-0-511-80284-3) and multiple imputation (Barnard and Rubin (1999), <doi:10.1093/biomet/86.4.948>) t-test. Graphical visualization by volcano plots.
Author: Matthias Kohl [aut, cre] (<https://orcid.org/0000-0001-9514-8910>)
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between MKinfer versions 0.4 dated 2020-01-08 and 0.5 dated 2020-04-25
DESCRIPTION | 8 - MD5 | 14 +- NEWS | 7 + R/binomDiffCI.R | 4 R/normCI.R | 6 - build/vignette.rds |binary inst/doc/MKinfer.html | 260 ++++++++++++++++++++++++------------------------ man/0MKinfer-package.Rd | 4 8 files changed, 156 insertions(+), 147 deletions(-)