Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
such as getting database specific taxonomic identifiers, verifying
species names, getting taxonomic hierarchies, fetching downstream and
upstream taxonomic names, getting taxonomic synonyms, converting
scientific to common names and vice versa, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Eduard Szoecs [aut],
Zachary Foster [aut],
Zebulun Arendsee [aut],
Carl Boettiger [ctb],
Karthik Ram [ctb],
Ignasi Bartomeus [ctb],
John Baumgartner [ctb],
James O'Donnell [ctb],
Jari Oksanen [ctb],
Bastian Greshake Tzovaras [ctb],
Philippe Marchand [ctb],
Vinh Tran [ctb],
Maëlle Salmon [ctb],
Gaopeng Li [ctb],
Matthias Grenié [ctb],
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between taxize versions 0.9.94 dated 2020-04-01 and 0.9.95 dated 2020-04-27
DESCRIPTION | 6 MD5 | 92 NAMESPACE | 4 NEWS.md | 12 R/bold_downstream.R |only R/bold_search.R | 81 R/children.R | 41 R/downstream.R | 47 R/get_boldid.R | 2 R/get_eolid.R | 4 R/get_iucn.R | 2 R/get_nbnid.R | 4 R/get_tolid.R | 2 R/tol_resolve.R | 2 build/vignette.rds |binary inst/CITATION | 4 inst/doc/infotable.html | 4 man/bold_children.Rd |only man/bold_downstream.Rd |only man/bold_search.Rd | 3 man/children.Rd | 19 man/downstream.Rd | 23 man/get_boldid.Rd | 2 man/get_eolid.Rd | 4 man/get_iucn.Rd | 2 man/get_nbnid.Rd | 4 man/get_tolid.Rd | 2 man/tol_resolve.Rd | 2 tests/fixtures/bold_children.yml |only tests/fixtures/bold_children_no_results.yml |only tests/fixtures/bold_downstream.yml |only tests/fixtures/bold_downstream_intermediate.yml |only tests/fixtures/bold_search.yml | 2603 +++++------ tests/fixtures/children_bold.yml |only tests/fixtures/downstream_bold.yml |only tests/fixtures/get_boldid.yml | 108 tests/fixtures/get_boldid_ask_false.yml | 20 tests/fixtures/get_boldid_no_parent_name.yml | 22 tests/fixtures/get_tolid.yml |only tests/fixtures/get_tolid_ask_arg.yml |only tests/fixtures/tax_rank_get_star_input.yml | 38 tests/fixtures/tol_resolve.yml |only tests/fixtures/tol_resolve_context_name.yml |only tests/fixtures/tol_resolve_do_approximate_matching.yml |only tests/fixtures/tol_resolve_do_approximate_matching_false.yml |only tests/testthat/Rplots.pdf |binary tests/testthat/test-bold_children.R |only tests/testthat/test-bold_downstream.R |only tests/testthat/test-bold_search.R | 2 tests/testthat/test-children.R | 21 tests/testthat/test-downstream.R | 20 tests/testthat/test-get_boldid.R | 1 tests/testthat/test-get_tolid.R |only tests/testthat/test-rankagg.R | 3 tests/testthat/test-tax_agg.R | 1 tests/testthat/test-tol_resolve.R | 39 56 files changed, 1816 insertions(+), 1430 deletions(-)
Title: Using Percolation and Conductance to Find Information Flow
Certainty in a Direct Network
Description: To find the certainty of dominance interactions with indirect
interactions being considered.
Author: Kevin Fujii [aut],
Jian Jin [aut],
Jessica Vandeleest [aut, cre],
Aaron Shev [aut],
Brianne Beisner [aut],
Brenda McCowan [aut, cph],
Hsieh Fushing [aut, cph]
Maintainer: Jessica Vandeleest <vandelee@ucdavis.edu>
Diff between Perc versions 0.1.4 dated 2020-03-10 and 0.1.5 dated 2020-04-27
DESCRIPTION | 8 ++--- MD5 | 24 ++++++++-------- NAMESPACE | 2 - R/Perc.R | 1 R/as.conflictmat.R | 13 ++++++-- inst/doc/Perc.R | 2 - inst/doc/Perc.Rmd | 2 - inst/doc/Perc.html | 61 ++++++++++++++++++++++-------------------- man/Perc.Rd | 16 +++++------ man/sampleEdgelist.Rd | 44 +++++++++++++++--------------- man/sampleRawMatrix.Rd | 34 +++++++++++------------ man/sampleWeightedEdgelist.Rd | 46 +++++++++++++++---------------- vignettes/Perc.Rmd | 2 - 13 files changed, 134 insertions(+), 121 deletions(-)
Title: Simulating Realistic Gene Expression and Clinical Data
Description: The Ultimate Microrray Prediction, Reality and Inference
Engine (UMPIRE) is a package to facilitate the simulation of realistic
microarray data sets with links to associated outcomes. See Zhang and
Coombes (2012) <doi:10.1186/1471-2105-13-S13-S1>. Version 2.0 adds the
ability to simulate realistic mixed-typed clinical data.
Author: Kevin R. Coombes, Jiexin Zhang, Caitlin E. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Umpire versions 2.0.0 dated 2020-04-14 and 2.0.1 dated 2020-04-27
DESCRIPTION | 8 - MD5 | 18 ++- R/e11-clinical.R | 38 ++++++- build/vignette.rds |binary inst/doc/Umpire.pdf |binary inst/doc/Umpire2.R | 36 +++---- inst/doc/Umpire2.html | 204 ++++++++++++++++++++---------------------- man/e14-CancerEngine-class.Rd | 5 - man/e31-setDataTypes.Rd | 7 + tests/t21-setDT.R |only tests/t22-survModel.R |only 11 files changed, 175 insertions(+), 141 deletions(-)
Title: Conditional Random Fields for Labelling Sequential Data in
Natural Language Processing
Description: Wraps the 'CRFsuite' library <https://github.com/chokkan/crfsuite> allowing users
to fit a Conditional Random Field model and to apply it on existing data.
The focus of the implementation is in the area of Natural Language Processing where this R package allows you to easily build and apply models
for named entity recognition, text chunking, part of speech tagging, intent recognition or classification of any category you have in mind. Next to training, a small web application
is included in the package to allow you to easily construct training data.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Naoaki Okazaki [aut, ctb, cph] (CRFsuite library (BSD licensed),
libLBFGS library (MIT licensed), Constant Quark Database software
(BSD licensed)),
Bob Jenkins [aut, ctb] (File src/cqdb/src/lookup3.c (Public Domain)),
Jorge Nocedal [aut, ctb, cph] (libLBFGS library (MIT licensed)),
Jesse Long [aut, ctb, cph] (RumAVL library (MIT licensed))
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between crfsuite versions 0.3 dated 2019-05-31 and 0.3.1 dated 2020-04-27
DESCRIPTION | 8 +- LICENSE | 10 -- MD5 | 40 +++++----- NEWS.md | 4 + R/evaluation.R | 2 R/feature_engineering.R | 2 R/modelling.R | 6 - R/training_data.R | 2 inst/app/annotation.Rmd | 65 +++++++++++++++- inst/doc/crfsuite-nlp.Rmd | 4 - inst/doc/crfsuite-nlp.html | 162 +++++++++++++++++++++++------------------- man/crf.Rd | 18 +++- man/crf_caretmethod.Rd | 4 - man/crf_cbind_attributes.Rd | 13 ++- man/crf_evaluation.Rd | 10 +- man/crf_options.Rd | 5 - man/merge.chunkrange.Rd | 5 - man/ner_download_modeldata.Rd | 14 ++- man/predict.crf.Rd | 12 ++- man/txt_feature.Rd | 7 + vignettes/crfsuite-nlp.Rmd | 4 - 21 files changed, 251 insertions(+), 146 deletions(-)
Title: Seeking and Finding Clones in Copy Number and Sequencing Data
Description: Defines the classes and functions used to simulate and
to analyze data sets describing copy number variants and,
optionally, sequencing mutations in order to detect clonal subsets.
See Zucker et al. (2019) <doi:10.1093/bioinformatics/btz057>.
Author: Kevin R. Coombes, Mark Zucker
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between CloneSeeker versions 1.0.9 dated 2020-01-09 and 1.0.10 dated 2020-04-27
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/01-cloneMaker.R | 6 ++++-- R/sysdata.rda |binary build/vignette.rds |binary inst/doc/CloneSeeker.pdf |binary man/05-findClones.Rd | 2 +- 7 files changed, 15 insertions(+), 13 deletions(-)
Title: Detection of Univariate Outliers
Description: Well known outlier detection techniques in the univariate case. Methods to deal with skewed distribution are included too. The Hidiroglou-Berthelot (1986) method to search for outliers in ratios of historical data is implemented as well. When available, survey weights can be used in outliers detection.
Author: Marcello D'Orazio
Maintainer: Marcello D'Orazio <mdo.statmatch@gmail.com>
Diff between univOutl versions 0.1-5 dated 2019-09-27 and 0.2 dated 2020-04-27
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NEWS | 10 +++++++--- R/HBmethod.R | 24 +++++++++++++++++++++--- R/LocScaleB.R | 22 ++++++++++++++++------ R/skew.misc.R |only man/HBmethod.Rd | 13 ++++++++++--- man/LocScaleB.Rd | 28 ++++++++++++++++++---------- man/skew.misc.Rd |only man/univOutl-package.Rd | 2 +- 10 files changed, 86 insertions(+), 37 deletions(-)
Title: Nonlinear Root Finding, Equilibrium and Steady-State Analysis of
Ordinary Differential Equations
Description: Routines to find the root of nonlinear functions, and to perform steady-state and equilibrium analysis of ordinary differential equations (ODE).
Includes routines that: (1) generate gradient and jacobian matrices (full and banded),
(2) find roots of non-linear equations by the 'Newton-Raphson' method,
(3) estimate steady-state conditions of a system of (differential) equations in full, banded or sparse form, using the 'Newton-Raphson' method, or by dynamically running,
(4) solve the steady-state conditions for uni-and multicomponent 1-D, 2-D, and 3-D partial differential equations, that have been converted to ordinary differential equations
by numerical differencing (using the method-of-lines approach).
Includes fortran code.
Author: Karline Soetaert [aut, cre],
Alan C. Hindmarsh [ctb] (files lsodes.f, sparse.f),
S.C. Eisenstat [ctb] (file sparse.f),
Cleve Moler [ctb] (file dlinpk.f),
Jack Dongarra [ctb] (file dlinpk.f),
Youcef Saad [ctb] (file dsparsk.f)
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between rootSolve versions 1.8.2 dated 2019-12-19 and 1.8.2.1 dated 2020-04-27
rootSolve-1.8.2.1/rootSolve/DESCRIPTION | 11 rootSolve-1.8.2.1/rootSolve/MD5 | 23 rootSolve-1.8.2.1/rootSolve/inst/doc/rootSolve.pdf |binary rootSolve-1.8.2.1/rootSolve/inst/doc/vignettes.bib |only rootSolve-1.8.2.1/rootSolve/man/steady.1D.Rd | 750 ++++++++++----------- rootSolve-1.8.2.1/rootSolve/man/steady.2D.Rd | 548 +++++++-------- rootSolve-1.8.2.1/rootSolve/man/steady.Rd | 250 +++---- rootSolve-1.8.2.1/rootSolve/src/lsodes.f | 8 rootSolve-1.8.2.1/rootSolve/src/sparse.f | 50 - rootSolve-1.8.2.1/rootSolve/src/sparsekit.f | 5 rootSolve-1.8.2.1/rootSolve/src/steady.f | 8 rootSolve-1.8.2.1/rootSolve/src/testMap.f | 1 rootSolve-1.8.2/rootSolve/build |only rootSolve-1.8.2/rootSolve/inst/doc/rootSolve.R |only 14 files changed, 836 insertions(+), 818 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
and fair-cut forest (Cortes (2019) <arXiv:1911.06646>),
for isolation-based outlier detection, clustered outlier detection, distance or similarity
approximation (Cortes (2019) <arXiv:1910.12362>),
and imputation of missing values (Cortes (2019) <arXiv:1911.06646>),
based on random or guided decision tree splitting. Provides simple heuristics for fitting the model to
categorical columns and handling missing data, and offers options for varying between random and guided
splits, and for using different splitting criteria.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.1.8 dated 2020-01-08 and 0.1.11 dated 2020-04-27
DESCRIPTION | 10 +++--- MD5 | 31 ++++++++++---------- NAMESPACE | 1 R/RcppExports.R | 4 ++ R/isoforest.R | 38 +++++++++++++++++++++--- man/add.isolation.tree.Rd | 3 - man/get.num.nodes.Rd |only man/isolation.forest.Rd | 62 ++++++++++++++++++++++++++-------------- man/predict.isolation_forest.Rd | 3 - man/unpack.isolation.forest.Rd | 4 +- src/RcppExports.cpp | 14 +++++++++ src/Rwrapper.cpp | 30 +++++++++++++++++++ src/dist.cpp | 6 ++- src/fit_model.cpp | 35 ++++++++++++++-------- src/impute.cpp | 2 + src/isotree.h | 20 +++++++----- src/predict.cpp | 32 ++++++++++++++++++++ 17 files changed, 220 insertions(+), 75 deletions(-)
Title: High Dimensional Bayesian Mediation Analysis
Description: Perform mediation analysis in the presence of high-dimensional
mediators based on the potential outcome framework. Bayesian Mediation
Analysis (BAMA), developed by Song et al (2019) <doi:10.1111/biom.13189>,
relies on two Bayesian sparse linear mixed models to simultaneously analyze
a relatively large number of mediators for a continuous exposure and outcome
assuming a small number of mediators are truly active. This sparsity
assumption also allows the extension of univariate mediator analysis by
casting the identification of active mediators as a variable selection
problem and applying Bayesian methods with continuous shrinkage priors on
the effects.
Author: Alexander Rix [aut, cre],
Yanyi Song [aut]
Maintainer: Alexander Rix <alexrix@umich.edu>
Diff between bama versions 0.9.1 dated 2019-09-30 and 1.0.0 dated 2020-04-27
DESCRIPTION | 17 ++-- MD5 | 36 ++++---- NAMESPACE | 3 NEWS.md | 36 +++++++- R/RcppExports.R | 4 R/bama.R | 195 +++++++++++++++++++++++++++++------------------- R/fdr.bama.R |only README.md | 57 ++++++++------ build/vignette.rds |binary inst/doc/bama.R | 17 ++-- inst/doc/bama.Rmd | 40 +++++---- inst/doc/bama.html | 58 ++++++-------- man/bama.Rd | 118 ++++++++++++++++++++--------- man/bama.data.Rd | 6 - man/fdr.bama.Rd |only man/print.fdr.bama.Rd |only man/summary.bama.Rd | 2 man/summary.fdr.bama.Rd |only src/RcppExports.cpp | 17 ++-- src/bama.cpp | 140 +++++++++++++++++++--------------- vignettes/bama.Rmd | 40 +++++---- 21 files changed, 479 insertions(+), 307 deletions(-)
Title: Tools for Analyzing Shapes and Patterns
Description: This is an evolving and growing collection of tools for the quantification, assessment, and comparison of shape and pattern. This collection provides tools for: (1) the spatial decomposition of planar shapes using 'ShrinkShape' to incrementally shrink shapes to extinction while computing area, perimeter, and number of parts at each iteration of shrinking; the spectra of results are returned in graphic and tabular formats (Remmel 2015) <doi:10.1111/cag.12222>, (2) simulating landscape patterns, (3) provision of tools for estimating composition and configuration parameters from a categorical (binary) landscape map (grid) and then simulates a selected number of statistically similar landscapes. Class-focused pattern metrics are computed for each simulated map to produce empirical distributions against which statistical comparisons can be made. The code permits the analysis of single maps or pairs of maps (Remmel and Fortin 2013) <doi:10.1007/s10980-013-9905-x>, (4) counting the number of each first-order pattern element and converting that information into both frequency and empirical probability vectors (Remmel 2020) <doi:10.3390/e22040420>, and (5) computing the porosity of raster patches <doi:10.3390/su10103413>. NOTE: This is a consolidation of existing packages ('PatternClass', 'ShapePattern') to begin warehousing all shape and pattern code in a common package. Additional utility tools for handling data are provided and this package will be added to as more tools are created, cleaned-up, and documented. Note that all future developments will appear in this package and that 'PatternClass' will eventually be archived.
Author: Tarmo K. Remmel [aut, cre] (<https://orcid.org/0000-0001-6251-876X>),
Marie-Josee Fortin [ctb],
Ferenc Csillag [ctb],
Sandor Kabos [ctb]
Maintainer: Tarmo K. Remmel <remmelt@yorku.ca>
Diff between ShapePattern versions 2.0.4 dated 2020-04-09 and 2.1.0 dated 2020-04-27
DESCRIPTION | 11 ++++++----- MD5 | 18 ++++++++++-------- NAMESPACE | 9 ++++++--- NEWS.md | 17 ++++++++++++++--- R/buildsurfs.R | 2 +- R/porosity.R |only build/partial.rdb |binary data/data.rda |binary man/ShapePattern-package.Rd | 21 ++++++++++++++------- man/data.Rd | 3 ++- man/porosity.Rd |only 11 files changed, 53 insertions(+), 28 deletions(-)
Title: Design and Analysis of a 2x2 Factorial Trial
Description: Used for the design and analysis of a 2x2 factorial trial for
a time-to-event endpoint. It performs power calculations and significance
testing as well as providing estimates of the relevant hazard ratios and the
corresponding 95% confidence intervals. Important reference papers include
Slud EV. (1994) <https://www.ncbi.nlm.nih.gov/pubmed/8086609>
Lin DY, Gong J, Gallo P, Bunn PH, Couper D. (2016) <DOI:10.1111/biom.12507>
Leifer ES, Troendle JF, Kolecki A, Follmann DA. (2020)
<https://github.com/EricSLeifer/factorial2x2/blob/master/Leifer%20et%20al.%20paper.pdf>.
Author: Eric Leifer and James Troendle
Maintainer: Eric Leifer <Eric.Leifer@gmail.com>
Diff between factorial2x2 versions 0.1.0 dated 2019-09-07 and 0.2.0 dated 2020-04-27
factorial2x2-0.1.0/factorial2x2/R/power12_12.R |only factorial2x2-0.1.0/factorial2x2/R/power13_13_13.R |only factorial2x2-0.1.0/factorial2x2/R/power23_13.R |only factorial2x2-0.1.0/factorial2x2/man/power12_12.Rd |only factorial2x2-0.1.0/factorial2x2/man/power13_13_13.Rd |only factorial2x2-0.1.0/factorial2x2/man/power23_13.Rd |only factorial2x2-0.2.0/factorial2x2/DESCRIPTION | 22 factorial2x2-0.2.0/factorial2x2/MD5 | 66 - factorial2x2-0.2.0/factorial2x2/NAMESPACE | 6 factorial2x2-0.2.0/factorial2x2/NEWS.md |only factorial2x2-0.2.0/factorial2x2/R/cor2x2.R | 22 factorial2x2-0.2.0/factorial2x2/R/crit2x2.R | 139 +-- factorial2x2-0.2.0/factorial2x2/R/fac2x2analyze.R | 282 ++++-- factorial2x2-0.2.0/factorial2x2/R/fac2x2design.R | 121 +- factorial2x2-0.2.0/factorial2x2/R/lgrkPower.R | 23 factorial2x2-0.2.0/factorial2x2/R/powerEA2.R |only factorial2x2-0.2.0/factorial2x2/R/powerEA3.R |only factorial2x2-0.2.0/factorial2x2/R/powerPA2.R |only factorial2x2-0.2.0/factorial2x2/R/simdat.R | 2 factorial2x2-0.2.0/factorial2x2/R/simdataSub.R |only factorial2x2-0.2.0/factorial2x2/README.md | 59 - factorial2x2-0.2.0/factorial2x2/build/vignette.rds |binary factorial2x2-0.2.0/factorial2x2/data/simdat.rda |binary factorial2x2-0.2.0/factorial2x2/data/simdataSub.rda |only factorial2x2-0.2.0/factorial2x2/inst/doc/fac2x2vignette.R | 320 +++++-- factorial2x2-0.2.0/factorial2x2/inst/doc/fac2x2vignette.Rmd | 327 +++++-- factorial2x2-0.2.0/factorial2x2/inst/doc/fac2x2vignette.html | 460 ++++++----- factorial2x2-0.2.0/factorial2x2/man/cor2x2.Rd | 2 factorial2x2-0.2.0/factorial2x2/man/crit2x2.Rd | 254 +++--- factorial2x2-0.2.0/factorial2x2/man/eventProb.Rd | 154 +-- factorial2x2-0.2.0/factorial2x2/man/fac2x2analyze.Rd | 432 +++++----- factorial2x2-0.2.0/factorial2x2/man/fac2x2design.Rd | 104 +- factorial2x2-0.2.0/factorial2x2/man/lgrkPower.Rd | 90 +- factorial2x2-0.2.0/factorial2x2/man/powerEA2.Rd |only factorial2x2-0.2.0/factorial2x2/man/powerEA3.Rd |only factorial2x2-0.2.0/factorial2x2/man/powerPA2.Rd |only factorial2x2-0.2.0/factorial2x2/man/roundDown.Rd | 58 - factorial2x2-0.2.0/factorial2x2/man/simdat.Rd | 56 - factorial2x2-0.2.0/factorial2x2/man/simdata.Rd | 54 - factorial2x2-0.2.0/factorial2x2/man/simdataSub.Rd |only factorial2x2-0.2.0/factorial2x2/man/strLgrkPower.Rd | 144 +-- factorial2x2-0.2.0/factorial2x2/vignettes/fac2x2vignette.Rmd | 327 +++++-- 42 files changed, 2106 insertions(+), 1418 deletions(-)
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
Analysis and Visualization
Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
Author: James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
Maintainer: James Dalgleish <james.dalgleish@nih.gov>
Diff between CNVScope versions 3.0.5 dated 2020-04-22 and 3.0.6 dated 2020-04-27
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/getAsymmetricBlockIndices.R | 6 +++--- man/getAsymmetricBlockIndices.Rd | 2 +- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Perform Inference on Algorithm-Agnostic Variable Importance
Description: Calculate point estimates of and valid confidence intervals for
nonparametric, algorithm-agnostic variable importance measures in high and low dimensions,
using flexible estimators of the underlying regression functions. For more information
about the methods, please see Williamson et al. (Biometrics, 2020) and Williamson et al. (arXiv, 2020+) <arXiv:2004.03683>.
Author: Brian D. Williamson [aut, cre]
(<https://orcid.org/0000-0002-7024-548X>),
Noah Simon [aut] (<https://orcid.org/0000-0002-8985-2474>),
Marco Carone [aut] (<https://orcid.org/0000-0003-2106-0953>)
Maintainer: Brian D. Williamson <brianw26@uw.edu>
Diff between vimp versions 2.0.1 dated 2020-04-11 and 2.0.2 dated 2020-04-27
vimp-2.0.1/vimp/R/cv_vim_nodonsker.R |only vimp-2.0.1/vimp/R/process_into_prediction.R |only vimp-2.0.1/vimp/R/run_sl.R |only vimp-2.0.1/vimp/R/sample_subsets.R |only vimp-2.0.1/vimp/R/sp_vim.R |only vimp-2.0.1/vimp/R/spvim_ics.R |only vimp-2.0.1/vimp/R/spvim_se.R |only vimp-2.0.1/vimp/man/cv_vim_nodonsker.Rd |only vimp-2.0.1/vimp/man/run_sl.Rd |only vimp-2.0.1/vimp/man/sample_subsets.Rd |only vimp-2.0.1/vimp/man/sp_vim.Rd |only vimp-2.0.1/vimp/man/spvim_ics.Rd |only vimp-2.0.1/vimp/man/spvim_se.Rd |only vimp-2.0.1/vimp/tests/testthat/test-sp_vim.R |only vimp-2.0.2/vimp/DESCRIPTION | 6 - vimp-2.0.2/vimp/MD5 | 60 +++++++----------- vimp-2.0.2/vimp/NAMESPACE | 9 -- vimp-2.0.2/vimp/R/average_vim.R | 4 - vimp-2.0.2/vimp/R/cv_vim.R | 32 +++++---- vimp-2.0.2/vimp/R/merge_vim.R | 4 - vimp-2.0.2/vimp/R/vim.R | 6 - vimp-2.0.2/vimp/R/vimp_accuracy.R | 2 vimp-2.0.2/vimp/R/vimp_anova.R | 2 vimp-2.0.2/vimp/R/vimp_auc.R | 2 vimp-2.0.2/vimp/R/vimp_deviance.R | 2 vimp-2.0.2/vimp/R/vimp_regression.R | 2 vimp-2.0.2/vimp/R/vimp_rsquared.R | 2 vimp-2.0.2/vimp/inst/doc/introduction_to_vimp.html | 68 ++++++++++----------- vimp-2.0.2/vimp/man/average_vim.Rd | 4 - vimp-2.0.2/vimp/man/cv_vim.Rd | 32 +++++---- vimp-2.0.2/vimp/man/merge_vim.Rd | 4 - vimp-2.0.2/vimp/man/vim.Rd | 6 - vimp-2.0.2/vimp/man/vimp_accuracy.Rd | 2 vimp-2.0.2/vimp/man/vimp_anova.Rd | 2 vimp-2.0.2/vimp/man/vimp_auc.Rd | 2 vimp-2.0.2/vimp/man/vimp_deviance.Rd | 2 vimp-2.0.2/vimp/man/vimp_regression.Rd | 2 vimp-2.0.2/vimp/man/vimp_rsquared.Rd | 2 38 files changed, 124 insertions(+), 135 deletions(-)
Title: Hypothesis Matrix Translation
Description: Translation between experimental null hypotheses, hypothesis matrices, and contrast matrices as used in linear regression models. The package is based on the method described in Schad, Vasishth, Hohenstein, and Kliegl (2019) <doi:10.1016/j.jml.2019.104038> and Rabe, Vasishth, Hohenstein, Kliegl, and Schad (2020) <doi:10.21105/joss.02134>.
Author: Maximilian M. Rabe [aut, cre],
Shravan Vasishth [aut],
Sven Hohenstein [aut],
Reinhold Kliegl [aut],
Daniel J. Schad [aut]
Maintainer: Maximilian M. Rabe <maximilian.rabe@uni-potsdam.de>
Diff between hypr versions 0.1.6 dated 2020-02-28 and 0.1.7 dated 2020-04-27
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- README.md | 6 ++++++ inst/CITATION | 9 +++++---- 4 files changed, 19 insertions(+), 12 deletions(-)
Title: Spatial Data Framework for ggplot2
Description: Spatial data plus the power of the ggplot2 framework means easier mapping when input
data are already in the form of spatial objects.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Brent Thorne [ctb] (<https://orcid.org/0000-0002-1099-3857>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between ggspatial versions 1.0.3 dated 2018-12-14 and 1.1.1 dated 2020-04-27
ggspatial-1.0.3/ggspatial/build |only ggspatial-1.0.3/ggspatial/inst/doc |only ggspatial-1.0.3/ggspatial/tests/testthat/test-df_spatial.R |only ggspatial-1.0.3/ggspatial/tests/testthat/test-geom_spatial.R |only ggspatial-1.0.3/ggspatial/vignettes |only ggspatial-1.1.1/ggspatial/DESCRIPTION | 27 - ggspatial-1.1.1/ggspatial/MD5 | 102 ++-- ggspatial-1.1.1/ggspatial/NAMESPACE | 53 +- ggspatial-1.1.1/ggspatial/R/annotation-map-tile.R | 55 +- ggspatial-1.1.1/ggspatial/R/annotation-north-arrow.R | 23 ggspatial-1.1.1/ggspatial/R/annotation-scale.R | 21 ggspatial-1.1.1/ggspatial/R/df-spatial-raster.R |only ggspatial-1.1.1/ggspatial/R/df-spatial-sf.R |only ggspatial-1.1.1/ggspatial/R/df-spatial-sp.R |only ggspatial-1.1.1/ggspatial/R/df-spatial-stars.R |only ggspatial-1.1.1/ggspatial/R/df-spatial.R | 196 -------- ggspatial-1.1.1/ggspatial/R/fixed-aspect.R |only ggspatial-1.1.1/ggspatial/R/geom-polypath.R | 19 ggspatial-1.1.1/ggspatial/R/geom-spatial-rect.R |only ggspatial-1.1.1/ggspatial/R/geom-spatial-segment.R |only ggspatial-1.1.1/ggspatial/R/geom-spatial-xline.R |only ggspatial-1.1.1/ggspatial/R/geom-spatial.R | 37 - ggspatial-1.1.1/ggspatial/R/ggspatial-package.R |only ggspatial-1.1.1/ggspatial/R/layer-spatial-bbox.R |only ggspatial-1.1.1/ggspatial/R/layer-spatial-raster.R | 191 +++++--- ggspatial-1.1.1/ggspatial/R/layer-spatial-stars.R |only ggspatial-1.1.1/ggspatial/R/layer-spatial.R | 38 + ggspatial-1.1.1/ggspatial/R/longlake-data.R | 71 ++- ggspatial-1.1.1/ggspatial/man/annotation_map_tile.Rd | 38 + ggspatial-1.1.1/ggspatial/man/annotation_north_arrow.Rd | 29 - ggspatial-1.1.1/ggspatial/man/annotation_scale.Rd | 39 + ggspatial-1.1.1/ggspatial/man/annotation_spatial_hline.Rd |only ggspatial-1.1.1/ggspatial/man/df_spatial.Rd | 3 ggspatial-1.1.1/ggspatial/man/figures |only ggspatial-1.1.1/ggspatial/man/fixed_plot_aspect.Rd |only ggspatial-1.1.1/ggspatial/man/geom_polypath.Rd | 19 ggspatial-1.1.1/ggspatial/man/geom_spatial_rect.Rd |only ggspatial-1.1.1/ggspatial/man/geom_spatial_segment.Rd |only ggspatial-1.1.1/ggspatial/man/ggspatial-package.Rd |only ggspatial-1.1.1/ggspatial/man/layer_spatial.Raster.Rd | 30 - ggspatial-1.1.1/ggspatial/man/layer_spatial.Rd | 35 + ggspatial-1.1.1/ggspatial/man/layer_spatial.bbox.Rd |only ggspatial-1.1.1/ggspatial/man/layer_spatial.stars.Rd |only ggspatial-1.1.1/ggspatial/man/load_longlake_data.Rd | 11 ggspatial-1.1.1/ggspatial/man/north_arrow_orienteering.Rd | 51 +- ggspatial-1.1.1/ggspatial/man/reexports.Rd |only ggspatial-1.1.1/ggspatial/man/stat_spatial_identity.Rd | 36 - ggspatial-1.1.1/ggspatial/tests/testthat/rosm.cache/hillshade |only ggspatial-1.1.1/ggspatial/tests/testthat/rosm.cache/osm/13_1296_2773.png |only ggspatial-1.1.1/ggspatial/tests/testthat/rosm.cache/osm/13_1296_2774.png |only ggspatial-1.1.1/ggspatial/tests/testthat/rosm.cache/osm/13_1297_2773.png |only ggspatial-1.1.1/ggspatial/tests/testthat/rosm.cache/osm/13_1297_2774.png |only ggspatial-1.1.1/ggspatial/tests/testthat/test-annotation-map-tile.R | 87 ++- ggspatial-1.1.1/ggspatial/tests/testthat/test-annotation-north-arrow.R | 89 ++- ggspatial-1.1.1/ggspatial/tests/testthat/test-annotation-scale.R | 100 +--- ggspatial-1.1.1/ggspatial/tests/testthat/test-df-spatial-raster.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-df-spatial-sf.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-df-spatial-sp.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-df-spatial-stars.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-df-spatial.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-fixed-aspect.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-geom-polypath.R | 17 ggspatial-1.1.1/ggspatial/tests/testthat/test-geom-spatial-rect.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-geom-spatial-segment.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-geom-spatial-xline.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-geom-spatial.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-layer-spatial-bbox.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-layer-spatial-raster.R | 236 ---------- ggspatial-1.1.1/ggspatial/tests/testthat/test-layer-spatial.R | 46 + ggspatial-1.1.1/ggspatial/tests/testthat/test-longlake-data.R |only ggspatial-1.1.1/ggspatial/tests/testthat/test-test-layer-spatial-stars.R |only 71 files changed, 879 insertions(+), 820 deletions(-)
Title: Space-Time Estimation of Forest Variables using the FIA Database
Description: The goal of 'rFIA' is to increase the accessibility and use of the United States Forest Services (USFS) Forest Inventory and Analysis (FIA) Database by providing a user-friendly, open source toolkit to easily query and analyze FIA Data. Designed to accommodate a wide range of potential user objectives, 'rFIA' simplifies the estimation of forest variables from the FIA Database and allows all R users (experts and newcomers alike) to unlock the flexibility inherent to the Enhanced FIA design. Specifically, 'rFIA' improves accessibility to the spatio-temporal estimation capacity of the FIA Database by producing space-time indexed summaries of forest variables within user-defined population boundaries. Direct integration with other popular R packages (e.g., 'dplyr', 'tidyr', and 'sf') facilitates efficient space-time query and data summary, and supports common data representations and API design. The package implements design-based estimation procedures outlined by Bechtold & Patterson (2005) <doi:10.2737/SRS-GTR-80>, and has been validated against estimates and sampling errors produced by FIA 'EVALIDator'. Current development is focused on the implementation of spatially-enabled model-assisted estimators to improve population, change, and ratio estimates.
Author: Hunter Stanke [aut, cre],
Andrew Finley [aut]
Maintainer: Hunter Stanke <stankehu@msu.edu>
Diff between rFIA versions 0.2.1 dated 2020-04-03 and 0.2.2 dated 2020-04-27
rFIA-0.2.1/rFIA/data/datalist |only rFIA-0.2.2/rFIA/DESCRIPTION | 8 +-- rFIA-0.2.2/rFIA/MD5 | 35 +++++++--------- rFIA-0.2.2/rFIA/R/areaNew.R | 13 ++++++ rFIA-0.2.2/rFIA/R/biomassNew.R | 13 ++++++ rFIA-0.2.2/rFIA/R/diversityNew.R | 13 ++++++ rFIA-0.2.2/rFIA/R/dwmNew.R | 13 ++++++ rFIA-0.2.2/rFIA/R/fsi.R | 13 ++++++ rFIA-0.2.2/rFIA/R/functionsFIA.R | 79 +++++++++++++++++++++++++++++++------ rFIA-0.2.2/rFIA/R/globalVars.R | 2 rFIA-0.2.2/rFIA/R/growMortNew.R | 13 ++++++ rFIA-0.2.2/rFIA/R/invasiveNew.R | 13 ++++++ rFIA-0.2.2/rFIA/R/seedlingNew.R | 13 ++++++ rFIA-0.2.2/rFIA/R/standStructNew.R | 13 ++++++ rFIA-0.2.2/rFIA/R/sustIndex.R | 11 ++--- rFIA-0.2.2/rFIA/R/tpaNew.R | 13 +++++- rFIA-0.2.2/rFIA/R/vitalRatesNew.R | 13 ++++++ rFIA-0.2.2/rFIA/man/readFIA.Rd | 22 +++++++--- rFIA-0.2.2/rFIA/man/standStruct.Rd | 2 19 files changed, 255 insertions(+), 47 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Astronomical calculations related solar angles and
day length. Colours and vision. This package is part of the 'r4photobiology'
suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.10.1 dated 2020-04-17 and 0.10.2 dated 2020-04-27
DESCRIPTION | 10 MD5 | 40 - NEWS | 28 - R/color.of.R | 52 +- R/copy.attr.R | 2 R/mspct.median.r | 2 R/na.rm.R | 1 R/rbindspct.r | 182 ++----- R/spct.classes.r | 9 R/spct.integrate.r | 39 - R/spct.new.r | 4 README.md | 4 build/vignette.rds |binary data/white-led-spct.rda |binary inst/doc/userguide1-intro.html | 6 inst/doc/userguide2-radiation.Rmd | 2 inst/doc/userguide2-radiation.html | 878 ++++++++++++++++++------------------- inst/doc/userguide3-astronomy.html | 26 - man/is_tagged.Rd | 2 man/s_median.Rd | 2 vignettes/userguide2-radiation.Rmd | 2 21 files changed, 606 insertions(+), 685 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>),
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
François Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.2.2 dated 2020-02-03 and 2.3.0 dated 2020-04-27
DESCRIPTION | 8 MD5 | 64 - NAMESPACE | 255 ++--- NEWS.md | 192 +-- R/copy_labels.R | 148 +-- R/labelled.R | 132 +- R/lookfor.R | 242 ++-- R/mean.R | 36 R/na_values.R | 394 ++++---- R/recode.R | 46 R/remove_attributes.R | 72 - R/remove_labels.R | 245 ++-- R/retrocompatibility.R | 94 - R/tagged_na.R | 114 +- R/to_character.R | 84 - R/to_factor.R | 346 +++---- R/to_labelled.R | 452 ++++----- R/to_na.R | 138 +- R/val_labels.R | 728 +++++++------- R/var_label.R | 286 ++--- README.md | 114 +- build/vignette.rds |binary inst/doc/intro_labelled.R | 460 ++++----- inst/doc/intro_labelled.Rmd | 820 ++++++++-------- inst/doc/intro_labelled.html | 2016 ++++++++++++++++++++--------------------- man/figures/labelled.svg | 312 +++--- man/nolabel_to_na.Rd | 36 man/remove_labels.Rd | 3 man/to_factor.Rd | 11 man/val_labels_to_na.Rd | 42 tests/testthat.R | 6 tests/testthat/test-labelled.r | 658 ++++++------- vignettes/intro_labelled.Rmd | 820 ++++++++-------- 33 files changed, 4714 insertions(+), 4660 deletions(-)
Title: Bayesian Seemingly Unrelated Regression
Description: Bayesian seemingly unrelated regression with general variable selection and dense/sparse covariance matrix. The sparse seemingly unrelated regression is described in Banterle et al. (2018) <doi:10.1101/467019>.
Author: Marco Banterle [aut],
Zhi Zhao [aut, cre],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb],
Alex Lewin [aut],
Manuela Zucknick [ctb],
Waldir Leoncio [ctb]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSUR versions 1.1-1 dated 2020-04-17 and 1.1-2 dated 2020-04-27
DESCRIPTION | 18 +++++++------ MD5 | 36 +++++++++++++------------- R/BayesSUR.R | 13 +++++++-- R/example_GDSC.R | 2 - R/getEstimator.R | 10 +++---- R/plot.BayesSUR.R | 2 - R/plot.Estimator.R | 9 +++++- R/targetGene.R | 2 - build/vignette.rds |binary data/example_GDSC.rda |binary inst/doc/BayesSUR.pdf |binary man/BayesSUR.Rd | 13 +++++++-- man/example_GDSC.Rd | 6 ++-- man/example_eQTL.Rd | 4 ++ man/plot.BayesSUR.Rd | 2 - man/plot.Estimator.Rd | 9 +++++- man/targetGene.Rd | 6 ++-- src/HRR_Chain.cpp | 67 +++++++++++++++++++++++++++++++++++--------------- src/distr.cpp | 6 ++-- 19 files changed, 135 insertions(+), 70 deletions(-)
Title: Fast Data Aggregation, Modification, and Filtering with Pipes
and 'data.table'
Description: Package provides pipe-style interface for 'data.table'. It preserves all 'data.table' features without
significant impact on performance. 'let' and 'take' functions are simplified interfaces for most common data
manipulation tasks. For example, you can write 'take(mtcars, mean(mpg), by = am)' for aggregation or
'let(mtcars, hp_wt = hp/wt, hp_wt_mpg = hp_wt/mpg)' for modification. Use 'take_if/let_if' for conditional
aggregation/modification. 'query_if' function translates its arguments one-to-one to '[.data.table' method.
Additionally there are some conveniences such as automatic 'data.frame' conversion to 'data.table'.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between maditr versions 0.6.3 dated 2019-12-03 and 0.7.1 dated 2020-04-27
DESCRIPTION | 10 MD5 | 50 ++-- NAMESPACE | 23 +- NEWS | 7 R/dt_utils.R | 204 +++++++++--------- R/let.R | 429 ++++++++++++++++----------------------- R/let_all.R |only R/maditr.R | 84 ++++++- R/on_attach.R | 22 +- R/query.R | 10 R/to_list.R |only R/utils.R | 119 ++++++++-- R/verbs.R | 40 +++ build/vignette.rds |binary inst/doc/Introduction.R | 69 ++++++ inst/doc/Introduction.Rmd | 78 ++++++- inst/doc/Introduction.html | 296 +++++++++++++++++++------- inst/tinytest/test_dplyr_verbs.R | 24 ++ inst/tinytest/test_let_all.R |only inst/tinytest/test_take_all.R |only inst/tinytest/test_to_list.R |only inst/tinytest/test_utils.R | 228 ++++++++++---------- inst/tinytest/test_verbs.R | 23 +- man/dt_mutate.Rd | 18 + man/let_if.Rd | 222 ++++++++------------ man/maditr.Rd | 83 ++++++- man/to_list.Rd |only tests/tinytest.R | 1 vignettes/Introduction.Rmd | 78 ++++++- 29 files changed, 1328 insertions(+), 790 deletions(-)
Title: Extension to 'spatstat' for Large Datasets on a Linear Network
Description: Extension to the 'spatstat' package, for analysing large datasets
of spatial points on a network. The geometrically-corrected
K function is computed using the memory-efficient tree-based
algorithm described by Rakshit, Baddeley and Nair (2019).
Author: Suman Rakshit [aut, cph] (<https://orcid.org/0000-0003-0052-128X>),
Adrian Baddeley [cre, cph] (<https://orcid.org/0000-0001-9499-8382>)
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.Knet versions 1.11-2 dated 2019-08-09 and 1.12-2 dated 2020-04-27
DESCRIPTION | 17 ++++++++--------- MD5 | 12 +++++++----- R/Knet.R | 1 + R/Knetinhom.R | 4 ++++ build/partial.rdb |binary data/wacrashes.rda |binary src/init.c |only tests |only 8 files changed, 20 insertions(+), 14 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.9.860.2.0 dated 2020-04-14 and 0.9.870.2.0 dated 2020-04-27
ChangeLog | 15 DESCRIPTION | 8 MD5 | 75 +- inst/NEWS.Rd | 34 - inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/armadillo | 1 inst/include/armadillo_bits/Proxy.hpp | 97 +-- inst/include/armadillo_bits/SpCol_bones.hpp | 4 inst/include/armadillo_bits/SpCol_meat.hpp | 30 inst/include/armadillo_bits/SpMat_bones.hpp | 16 inst/include/armadillo_bits/SpMat_meat.hpp | 87 +- inst/include/armadillo_bits/SpProxy.hpp | 108 +++ inst/include/armadillo_bits/SpRow_bones.hpp | 4 inst/include/armadillo_bits/SpRow_meat.hpp | 30 inst/include/armadillo_bits/SpSubview_bones.hpp | 122 ++- inst/include/armadillo_bits/SpSubview_meat.hpp | 251 ++++++- inst/include/armadillo_bits/arma_forward.hpp | 2 inst/include/armadillo_bits/arma_version.hpp | 4 inst/include/armadillo_bits/diagmat_proxy.hpp | 64 + inst/include/armadillo_bits/eGlue_bones.hpp | 1 inst/include/armadillo_bits/eOp_bones.hpp | 1 inst/include/armadillo_bits/fn_diagvec.hpp | 20 inst/include/armadillo_bits/fn_trimat_ind.hpp |only inst/include/armadillo_bits/op_diagmat_bones.hpp | 14 inst/include/armadillo_bits/op_diagmat_meat.hpp | 706 ++++++++++++++++------ inst/include/armadillo_bits/op_diagvec_bones.hpp | 21 inst/include/armadillo_bits/op_diagvec_meat.hpp | 466 +++++++++++++- inst/include/armadillo_bits/op_htrans_bones.hpp | 20 inst/include/armadillo_bits/op_htrans_meat.hpp | 373 ++--------- inst/include/armadillo_bits/op_reshape_meat.hpp | 15 inst/include/armadillo_bits/op_strans_bones.hpp | 38 - inst/include/armadillo_bits/op_strans_meat.hpp | 542 +++------------- inst/include/armadillo_bits/op_vectorise_meat.hpp | 269 ++++---- inst/include/armadillo_bits/operator_minus.hpp | 2 inst/include/armadillo_bits/operator_plus.hpp | 23 inst/include/armadillo_bits/spglue_times_meat.hpp | 4 inst/include/armadillo_bits/traits.hpp | 33 + inst/tinytest/test_scipy2r.R | 2 39 files changed, 2095 insertions(+), 1407 deletions(-)
Title: Using R to Run 'JAGS'
Description: Providing wrapper functions to implement Bayesian analysis in JAGS. Some major features include monitoring convergence of a MCMC model using Rubin and Gelman Rhat statistics, automatically running a MCMC model till it converges, and implementing parallel processing of a MCMC model for multiple chains.
Author: Yu-Sung Su <suyusung@tsinghua.edu.cn>,
Masanao Yajima <yajima@bu.edu>,
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between R2jags versions 0.5-7 dated 2015-08-23 and 0.6-1 dated 2020-04-27
R2jags-0.5-7/R2jags/COPYING.LIB |only R2jags-0.6-1/R2jags/CHANGELOG | 9 ++++++++- R2jags-0.6-1/R2jags/DESCRIPTION | 13 +++++++------ R2jags-0.6-1/R2jags/MD5 | 8 ++++---- R2jags-0.6-1/R2jags/R/jagsParallel.R | 1 + R2jags-0.6-1/R2jags/README.md |only 6 files changed, 20 insertions(+), 11 deletions(-)
Title: Semi-Confirmatory Structural Equation Modeling via Penalized
Likelihood or Least Squares
Description: Fits semi-confirmatory structural equation modeling (SEM) via penalized likelihood (PL) or penalized least squares (PLS). For details, please see Huang (2020) <doi:10.18637/jss.v093.i07>.
Author: Po-Hsien Huang [cre, aut],
Wen-Hsin Hu [aut]
Maintainer: Po-Hsien Huang <psyphh@gmail.com>
Diff between lslx versions 0.6.9 dated 2019-10-15 and 0.6.10 dated 2020-04-27
lslx-0.6.10/lslx/DESCRIPTION | 8 lslx-0.6.10/lslx/MD5 | 37 +-- lslx-0.6.10/lslx/R/lslx-class.R | 9 lslx-0.6.10/lslx/R/lslx-extract-method.R | 99 ++++++++ lslx-0.6.10/lslx/R/lslx-s3-interface.R | 38 ++- lslx-0.6.10/lslx/R/lslx-summarize-method.R | 11 lslx-0.6.10/lslx/R/lslx-test-method.R | 31 +- lslx-0.6.10/lslx/R/polyhedral.R | 6 lslx-0.6.10/lslx/build/vignette.rds |binary lslx-0.6.10/lslx/inst/CITATION | 20 - lslx-0.6.10/lslx/inst/doc/factor-analysis.html | 146 ++++++------ lslx-0.6.10/lslx/inst/doc/missing-data-analysis.html | 56 ++-- lslx-0.6.10/lslx/inst/doc/multi-group-analysis.html | 110 ++++----- lslx-0.6.10/lslx/inst/doc/regression-analysis.html | 136 +++++------ lslx-0.6.10/lslx/inst/doc/structural-equation-modeling.html | 52 ++-- lslx-0.6.10/lslx/man/lslx.Rd | 9 lslx-0.6.10/lslx/man/plsem.Rd | 28 ++ lslx-0.6.9/lslx/inst/doc/vignette-lslx.R |only lslx-0.6.9/lslx/inst/doc/vignette-lslx.Rnw |only lslx-0.6.9/lslx/inst/doc/vignette-lslx.pdf |only lslx-0.6.9/lslx/vignettes/vignette-lslx.Rnw |only lslx-0.6.9/lslx/vignettes/vignette-lslx.bib |only 22 files changed, 486 insertions(+), 310 deletions(-)
Title: Interfaces for Loading Datasets
Description: Visual interface for loading datasets in RStudio from all installed (including unloaded) packages, also includes command line interfaces.
Author: Bastiaan quast [aut, cre]
Maintainer: Bastiaan quast <bquast@gmail.com>
Diff between datasets.load versions 1.2.0 dated 2020-01-07 and 1.4.0 dated 2020-04-27
datasets.load-1.2.0/datasets.load/man/figures |only datasets.load-1.4.0/datasets.load/DESCRIPTION | 10 +++++----- datasets.load-1.4.0/datasets.load/MD5 | 6 +++--- datasets.load-1.4.0/datasets.load/NEWS.md |only datasets.load-1.4.0/datasets.load/README.md | 17 +++++++---------- 5 files changed, 15 insertions(+), 18 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.
Author: Andrew Gelman [aut],
Yu-Sung Su [aut, cre],
Masanao Yajima [ctb],
Jennifer Hill [ctb],
Maria Grazia Pittau [ctb],
Jouni Kerman [ctb],
Tian Zheng [ctb],
Vincent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between arm versions 1.10-1 dated 2018-04-13 and 1.11-1 dated 2020-04-27
CHANGELOG | 4 ++++ DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 1 + 4 files changed, 14 insertions(+), 9 deletions(-)
Title: XML Output Functions for Easy Creation of Moodle Questions
Description: Provides a set of basic functions for creating Moodle XML
output files suited for importing questions in Moodle (a learning
management system, see <https://moodle.org/> for more information).
Author: Emmanuel Curis [aut, cre] (<https://orcid.org/0000-0001-8382-1493>)
Maintainer: Emmanuel Curis <emmanuel.curis@parisdescartes.fr>
Diff between SARP.moodle versions 0.3.10 dated 2019-04-12 and 0.7.1 dated 2020-04-27
DESCRIPTION | 15 - MD5 | 46 ++- NAMESPACE | 6 R/coder_texte.R |only R/conversion_csv.R | 551 ++++++++++++++++++++++++++++++++++++++++++---- R/formules.R |only R/images.R | 93 ++++++- R/initialisation.R | 8 R/libre.R | 109 +++++---- R/qcm.R | 18 + R/question.R | 35 +- R/sortie_R.R |only man/affichages.Rd | 5 man/categorie.Rd | 10 man/cvs.moodle.Rd | 80 ++++++ man/debuter_xml.moodle.Rd | 5 man/image.Rd | 107 ++++++-- man/inserer_formule.Rd |only man/inserer_smiles.Rd |only man/libre.moodle.Rd | 6 man/numerique.moodle.Rd | 10 man/ouverte.moodle.Rd | 8 man/qcm.moodle.Rd | 12 - man/qroc.moodle.Rd | 16 - man/question_moodle.Rd | 5 man/sortie_R.Rd |only man/vf.moodle.Rd | 12 - 27 files changed, 950 insertions(+), 207 deletions(-)
Title: Curriculum Vitae for R Markdown
Description: Provides templates and functions to simplify the production and maintenance of curriculum vitae.
Author: Mitchell O'Hara-Wild [aut, cre]
(<https://orcid.org/0000-0001-6729-7695>),
Rob Hyndman [aut] (<https://orcid.org/0000-0002-2140-5352>),
Yihui Xie [ctb] (<https://orcid.org/0000-0003-0645-5666>)
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vitae versions 0.2.1 dated 2019-12-15 and 0.2.2 dated 2020-04-27
DESCRIPTION | 12 - MD5 | 28 +-- NEWS.md | 6 R/brief.R | 6 R/detailed.R | 10 - build/vignette.rds |binary inst/doc/data.html | 98 +++++------ inst/doc/extending.html | 62 +++--- inst/doc/vitae.html | 8 inst/rmarkdown/templates/awesomecv/skeleton/skeleton.Rmd | 1 inst/rmarkdown/templates/hyndman/skeleton/skeleton.Rmd | 1 inst/rmarkdown/templates/latexcv/skeleton/skeleton.Rmd | 1 inst/rmarkdown/templates/moderncv/skeleton/skeleton.Rmd | 1 inst/rmarkdown/templates/twentyseconds/skeleton/skeleton.Rmd | 1 man/vitae-package.Rd | 4 15 files changed, 124 insertions(+), 115 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-09 0.1-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-29 1.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-11 0.2.1
2018-04-10 0.2.0
2018-03-23 0.1.5
2018-03-21 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-15 0.18.0
2018-03-14 0.17.1
2018-01-18 0.17.0
2017-12-20 0.16.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-18 1.1
2015-07-07 1.0
Title: Interface to 'Kusto'/'Azure Data Explorer'
Description: An interface to 'Azure Data Explorer', also known as 'Kusto', a fast, highly scalable data exploration service from Microsoft: <https://azure.microsoft.com/en-us/services/data-explorer/>. Includes 'DBI' and 'dplyr' interfaces, with the latter modelled after the 'dbplyr' package, whereby queries are translated from R into the native 'KQL' query language and executed lazily. On the admin side, the package extends the object framework provided by 'AzureRMR' to support creation and deletion of databases, and management of database principals. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut],
Alex Kyllo [aut, cre],
dbplyr development team [cph] (Original framework for dplyr/database
interface),
Microsoft [cph]
Maintainer: Alex Kyllo <jekyllo@microsoft.com>
Diff between AzureKusto versions 1.0.5 dated 2020-01-29 and 1.0.6 dated 2020-04-27
DESCRIPTION | 8 LICENSE | 4 MD5 | 208 +-- NAMESPACE | 331 ++--- NEWS.md | 44 R/AzureKusto.R | 30 R/add_methods.R | 300 ++-- R/az_database.R | 278 ++-- R/az_kusto.R | 296 ++-- R/dbi.R | 732 +++++------ R/endpoint.R | 568 ++++---- R/ident.R | 60 R/ingest.R | 582 ++++----- R/kql-build.R | 706 +++++------ R/kql-escape.R | 444 +++--- R/kql-render.R | 96 - R/kusto_token.R | 248 +-- R/ops.R | 622 ++++----- R/partial_eval.R | 352 ++--- R/query.R | 472 +++---- R/reexport-dplyr.R | 32 R/tbl.R | 852 ++++++------- R/translate-kql.R | 866 ++++++------- README.md | 378 ++--- build/vignette.rds |binary inst/doc/AzureKusto.R | 256 ++-- inst/doc/AzureKusto.Rmd | 362 ++--- inst/doc/AzureKusto.html | 917 +++++++------- man/AzureKusto.Rd | 118 - man/AzureKustoConnection-class.Rd | 20 man/AzureKustoDriver-class.Rd | 20 man/AzureKustoResult-class.Rd | 20 man/DBI_query.Rd | 146 +- man/DBI_table.Rd | 151 +- man/add_op_join.Rd | 73 - man/add_op_set_op.Rd | 36 man/add_op_single.Rd | 40 man/az_kusto.Rd | 300 +++- man/az_kusto_database.Rd | 273 +++- man/base_agg.Rd | 30 man/base_scalar.Rd | 30 man/base_window.Rd | 30 man/build_kql.Rd | 38 man/collect.tbl_kusto.Rd | 36 man/compute.tbl_kusto.Rd | 38 man/copy_to.kusto_database_endpoint.Rd | 71 - man/create_kusto_cluster.Rd | 104 - man/database_endpoint.Rd | 244 +-- man/delete_kusto_cluster.Rd | 94 - man/escape.Rd | 56 man/flatten_query.Rd | 32 man/get_kusto_cluster.Rd | 98 - man/get_kusto_token.Rd | 139 +- man/ident.Rd | 28 man/ident_q.Rd | 28 man/ingest.Rd | 225 ++- man/is.Rd | 34 man/join.Rd | 212 ++- man/kql.Rd | 28 man/kql_aggregate.Rd | 28 man/kql_build.Rd | 28 man/kql_build.op_mutate.Rd | 52 man/kql_escape_ident.Rd | 28 man/kql_escape_ident_q.Rd | 28 man/kql_escape_logical.Rd | 32 man/kql_escape_string.Rd | 28 man/kql_infix.Rd | 28 man/kql_prefix.Rd | 32 man/kql_quote.Rd | 46 man/kql_render.Rd | 32 man/kql_translate_env.Rd | 26 man/kql_translator.Rd | 37 man/kql_window.Rd | 28 man/kusto-DBI.Rd | 48 man/nest.tbl_kusto_abstract.Rd | 32 man/op_base.Rd | 36 man/op_double.Rd | 40 man/op_grps.Rd | 32 man/op_single.Rd | 40 man/op_vars.Rd | 32 man/partial_eval.Rd | 112 - man/reexports.Rd | 40 man/run_query.Rd | 78 - man/show_query.tbl_kusto_abstract.Rd | 28 man/summarise.Rd | 91 - man/tbl_kusto.Rd | 36 man/tbl_kusto_abstract.Rd | 38 man/translate_kql.Rd | 28 man/unnest.tbl_kusto_abstract.Rd | 38 tests/resources/iris.csv | 300 ++-- tests/resources/iris.json | 2104 ++++++++++++++++----------------- tests/testthat.R | 8 tests/testthat/test00_token.R | 196 +-- tests/testthat/test01_database.R | 174 +- tests/testthat/test02_query.R | 166 +- tests/testthat/test03_resource.R | 160 +- tests/testthat/test04_ingest.R | 350 ++--- tests/testthat/test05_dbi.R | 216 +-- tests/testthat/test06_dplyr.R | 400 +++--- tests/testthat/test_escape.r | 122 - tests/testthat/test_kql_build.R | 50 tests/testthat/test_partial_eval.R | 64 - tests/testthat/test_query_params.R | 76 - tests/testthat/test_translate.r | 1312 ++++++++++---------- vignettes/AzureKusto.Rmd | 362 ++--- 105 files changed, 10251 insertions(+), 9847 deletions(-)
Title: Amazon Web Services Storage APIs
Description: Interface to Amazon Web Services storage APIs, including
'Simple Storage Service' ('S3') and more <https://aws.amazon.com/>.
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.storage versions 0.1.7 dated 2020-03-29 and 0.1.8 dated 2020-04-27
DESCRIPTION | 8 MD5 | 382 +-- NAMESPACE | 36 R/backup_service.R | 6 R/dlm_service.R | 6 R/efs_operations.R | 76 R/efs_service.R | 6 R/fsx_operations.R | 62 R/fsx_service.R | 6 R/glacier_operations.R | 198 + R/glacier_service.R | 6 R/s3_interfaces.R | 2 R/s3_operations.R | 388 ++- R/s3_service.R | 6 R/s3control_interfaces.R | 6 R/s3control_service.R | 6 R/storagegateway_operations.R | 328 ++- R/storagegateway_service.R | 6 man/backup.Rd | 182 - man/dlm.Rd | 118 - man/efs.Rd | 144 - man/efs_create_file_system.Rd | 308 +-- man/efs_create_mount_target.Rd | 290 +- man/efs_create_tags.Rd | 106 - man/efs_delete_file_system.Rd | 92 man/efs_delete_mount_target.Rd | 114 - man/efs_delete_tags.Rd | 90 man/efs_describe_file_systems.Rd | 142 - man/efs_describe_lifecycle_configuration.Rd | 84 man/efs_describe_mount_target_security_groups.Rd | 84 man/efs_describe_mount_targets.Rd | 116 - man/efs_describe_tags.Rd | 94 man/efs_modify_mount_target_security_groups.Rd | 110 - man/efs_put_lifecycle_configuration.Rd | 158 - man/fsx.Rd | 134 - man/fsx_create_backup.Rd | 160 - man/fsx_create_file_system.Rd | 322 +-- man/fsx_create_file_system_from_backup.Rd | 266 +- man/fsx_delete_backup.Rd | 88 man/fsx_delete_file_system.Rd | 136 - man/fsx_describe_backups.Rd | 160 - man/fsx_describe_file_systems.Rd | 140 - man/fsx_list_tags_for_resource.Rd | 130 - man/fsx_tag_resource.Rd | 90 man/fsx_untag_resource.Rd | 76 man/fsx_update_file_system.Rd | 124 - man/glacier.Rd | 226 +- man/glacier_abort_multipart_upload.Rd | 122 - man/glacier_abort_vault_lock.Rd | 112 - man/glacier_add_tags_to_vault.Rd | 104 - man/glacier_complete_multipart_upload.Rd | 200 +- man/glacier_complete_vault_lock.Rd | 124 - man/glacier_create_vault.Rd | 120 - man/glacier_delete_archive.Rd | 132 - man/glacier_delete_vault.Rd | 114 - man/glacier_delete_vault_access_policy.Rd | 96 man/glacier_delete_vault_notifications.Rd | 104 - man/glacier_describe_job.Rd | 134 - man/glacier_describe_vault.Rd | 118 - man/glacier_get_data_retrieval_policy.Rd | 74 man/glacier_get_job_output.Rd | 238 +- man/glacier_get_vault_access_policy.Rd | 88 man/glacier_get_vault_lock.Rd | 124 - man/glacier_get_vault_notifications.Rd | 110 - man/glacier_initiate_job.Rd | 238 +- man/glacier_initiate_multipart_upload.Rd | 172 - man/glacier_initiate_vault_lock.Rd | 162 - man/glacier_list_jobs.Rd | 188 - man/glacier_list_multipart_uploads.Rd | 162 - man/glacier_list_parts.Rd | 156 - man/glacier_list_provisioned_capacity.Rd | 70 man/glacier_list_tags_for_vault.Rd | 78 man/glacier_list_vaults.Rd | 130 - man/glacier_purchase_provisioned_capacity.Rd | 66 man/glacier_remove_tags_from_vault.Rd | 100 - man/glacier_set_data_retrieval_policy.Rd | 122 - man/glacier_set_vault_access_policy.Rd | 106 - man/glacier_set_vault_notifications.Rd | 174 - man/glacier_upload_archive.Rd | 174 - man/glacier_upload_multipart_part.Rd | 202 +- man/s3.Rd | 272 +- man/s3_abort_multipart_upload.Rd | 142 - man/s3_complete_multipart_upload.Rd | 266 +- man/s3_copy_object.Rd | 852 ++++---- man/s3_create_bucket.Rd | 264 +- man/s3_create_multipart_upload.Rd | 624 +++--- man/s3_delete_bucket.Rd | 80 man/s3_delete_bucket_cors.Rd | 90 man/s3_delete_bucket_lifecycle.Rd | 100 - man/s3_delete_bucket_policy.Rd | 108 - man/s3_delete_bucket_replication.Rd | 96 man/s3_delete_bucket_tagging.Rd | 80 man/s3_delete_bucket_website.Rd | 98 man/s3_delete_object.Rd | 186 - man/s3_delete_object_tagging.Rd | 142 - man/s3_delete_objects.Rd | 276 +- man/s3_get_bucket_cors.Rd | 86 man/s3_get_bucket_lifecycle.Rd | 118 - man/s3_get_bucket_lifecycle_configuration.Rd | 134 - man/s3_get_bucket_location.Rd | 82 man/s3_get_bucket_notification.Rd | 72 man/s3_get_bucket_policy.Rd | 100 - man/s3_get_bucket_replication.Rd | 110 - man/s3_get_bucket_request_payment.Rd | 76 man/s3_get_bucket_tagging.Rd | 96 man/s3_get_bucket_versioning.Rd | 88 man/s3_get_bucket_website.Rd | 88 man/s3_get_object.Rd | 504 ++--- man/s3_get_object_acl.Rd | 126 - man/s3_get_object_tagging.Rd | 144 - man/s3_get_object_torrent.Rd | 102 - man/s3_head_bucket.Rd | 80 man/s3_head_object.Rd | 316 +-- man/s3_list_buckets.Rd | 46 man/s3_list_multipart_uploads.Rd | 250 +- man/s3_list_object_versions.Rd | 184 - man/s3_list_objects.Rd | 140 - man/s3_list_objects_v2.Rd | 202 +- man/s3_list_parts.Rd | 166 - man/s3_put_bucket_acl.Rd | 338 +-- man/s3_put_bucket_cors.Rd | 270 +- man/s3_put_bucket_lifecycle_configuration.Rd | 334 +-- man/s3_put_bucket_logging.Rd | 240 +- man/s3_put_bucket_notification_configuration.Rd | 316 +-- man/s3_put_bucket_policy.Rd | 126 - man/s3_put_bucket_replication.Rd | 336 +-- man/s3_put_bucket_request_payment.Rd | 110 - man/s3_put_bucket_tagging.Rd | 216 +- man/s3_put_bucket_versioning.Rd | 168 - man/s3_put_bucket_website.Rd | 238 +- man/s3_put_object.Rd | 1000 +++++----- man/s3_put_object_acl.Rd | 374 +-- man/s3_put_object_tagging.Rd | 252 +- man/s3_restore_object.Rd | 716 +++---- man/s3_upload_part.Rd | 332 +-- man/s3_upload_part_copy.Rd | 464 ++-- man/s3control.Rd | 122 - man/storagegateway.Rd | 358 +-- man/storagegateway_activate_gateway.Rd | 224 +- man/storagegateway_add_cache.Rd | 96 man/storagegateway_add_tags_to_resource.Rd | 128 - man/storagegateway_add_upload_buffer.Rd | 98 man/storagegateway_add_working_storage.Rd | 108 - man/storagegateway_cancel_archival.Rd | 76 man/storagegateway_cancel_retrieval.Rd | 78 man/storagegateway_create_cachedi_scsi_volume.Rd | 244 +- man/storagegateway_create_snapshot.Rd | 154 - man/storagegateway_create_snapshot_from_volume_recovery_point.Rd | 144 - man/storagegateway_create_storedi_scsi_volume.Rd | 218 +- man/storagegateway_create_tape_with_barcode.Rd | 172 - man/storagegateway_create_tapes.Rd | 194 - man/storagegateway_delete_bandwidth_rate_limit.Rd | 84 man/storagegateway_delete_chap_credentials.Rd | 78 man/storagegateway_delete_gateway.Rd | 94 man/storagegateway_delete_snapshot_schedule.Rd | 80 man/storagegateway_delete_tape.Rd | 72 man/storagegateway_delete_tape_archive.Rd | 62 man/storagegateway_delete_volume.Rd | 98 man/storagegateway_describe_bandwidth_rate_limit.Rd | 80 man/storagegateway_describe_cache.Rd | 68 man/storagegateway_describe_cachedi_scsi_volumes.Rd | 84 man/storagegateway_describe_chap_credentials.Rd | 76 man/storagegateway_describe_gateway_information.Rd | 72 man/storagegateway_describe_maintenance_start_time.Rd | 66 man/storagegateway_describe_snapshot_schedule.Rd | 68 man/storagegateway_describe_storedi_scsi_volumes.Rd | 80 man/storagegateway_describe_tape_archives.Rd | 106 - man/storagegateway_describe_tape_recovery_points.Rd | 96 man/storagegateway_describe_tapes.Rd | 122 - man/storagegateway_describe_upload_buffer.Rd | 86 man/storagegateway_describe_vtl_devices.Rd | 116 - man/storagegateway_describe_working_storage.Rd | 84 man/storagegateway_disable_gateway.Rd | 76 man/storagegateway_list_gateways.Rd | 100 - man/storagegateway_list_local_disks.Rd | 82 man/storagegateway_list_tags_for_resource.Rd | 82 man/storagegateway_list_volume_recovery_points.Rd | 76 man/storagegateway_list_volumes.Rd | 106 - man/storagegateway_remove_tags_from_resource.Rd | 84 man/storagegateway_reset_cache.Rd | 90 man/storagegateway_retrieve_tape_archive.Rd | 104 - man/storagegateway_retrieve_tape_recovery_point.Rd | 88 man/storagegateway_set_local_console_password.Rd | 74 man/storagegateway_shutdown_gateway.Rd | 106 - man/storagegateway_start_gateway.Rd | 84 man/storagegateway_update_bandwidth_rate_limit.Rd | 108 - man/storagegateway_update_chap_credentials.Rd | 124 - man/storagegateway_update_gateway_information.Rd | 106 - man/storagegateway_update_gateway_software_now.Rd | 88 man/storagegateway_update_maintenance_start_time.Rd | 120 - man/storagegateway_update_snapshot_schedule.Rd | 144 - man/storagegateway_update_vtl_device_type.Rd | 80 192 files changed, 14926 insertions(+), 14230 deletions(-)