Title: Data Generation with Poisson, Binary and Ordinal Components
Description: Generation of multiple count, binary and ordinal variables simultaneously
given the marginal characteristics and association structure. Throughout the package,
the word 'Poisson' is used to imply count data under the assumption of Poisson distribution. The details of the method are explained in Amatya, A. and Demirtas, H. (2015) <DOI:10.1080/00949655.2014.953534>.
Author: Gul Inan, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between PoisBinOrd versions 1.4.1 dated 2019-05-15 and 1.4.2 dated 2020-05-17
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/PoisBinOrd-package.Rd | 8 ++------ 3 files changed, 9 insertions(+), 13 deletions(-)
Title: Data Generation with Poisson, Binary and Continuous Components
Description: Generation of multiple count, binary and continuous variables simultaneously
given the marginal characteristics and association structure. Throughout the package,
the word 'Poisson' is used to imply count data under the assumption of Poisson distribution.
The details of the method are explained in Amatya et al. (2015) <DOI:10.1080/00949655.2014.953534>.
Author: Gul Inan, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between PoisBinNonNor versions 1.3.1 dated 2019-05-16 and 1.3.2 dated 2020-05-17
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- man/PoisBinNonNor-package.Rd | 8 ++------ 3 files changed, 10 insertions(+), 13 deletions(-)
Title: A Toolbox for Geometric Data Analysis and More
Description: Contains functions for 'specific' Multiple Correspondence Analysis,
Class Specific Analysis, Multiple Factor Analysis, 'standardized' MCA, computing and plotting structuring factors and concentration ellipses,
inductive tests and others tools for Geometric Data Analysis (Le Roux & Rouanet (2005) <doi:10.1007/1-4020-2236-0>). It also provides functions
for the translation of logit models coefficients into percentages (Deauvieau (2010) <doi:10.1177/0759106309352586>), weighted contingency tables, an association
measure for contingency tables ("Percentages of Maximum Deviation from Independence", aka PEM, see Cibois (1993) <doi:10.1177/075910639304000103>) and some tools to measure bivariate associations between variables
(phi, Cram<c3><a9>r V, correlation coefficient, eta-squared...).
Author: Nicolas Robette
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between GDAtools versions 1.4 dated 2017-03-07 and 1.5 dated 2020-05-17
GDAtools-1.4/GDAtools/R/GDAtools-internal.R |only GDAtools-1.5/GDAtools/DESCRIPTION | 25 - GDAtools-1.5/GDAtools/MD5 | 37 +- GDAtools-1.5/GDAtools/NAMESPACE | 11 GDAtools-1.5/GDAtools/NEWS | 18 + GDAtools-1.5/GDAtools/R/assoc.catcont.R |only GDAtools-1.5/GDAtools/R/assoc.twocat.R |only GDAtools-1.5/GDAtools/R/catdesc.R |only GDAtools-1.5/GDAtools/R/conc.ellipse.R | 127 ++++---- GDAtools-1.5/GDAtools/R/condesc.R |only GDAtools-1.5/GDAtools/R/ggadd_ellipses.R |only GDAtools-1.5/GDAtools/R/ggadd_interaction.R |only GDAtools-1.5/GDAtools/R/ggadd_supvar.R |only GDAtools-1.5/GDAtools/R/ggcloud_indiv.R |only GDAtools-1.5/GDAtools/R/ggcloud_variables.R |only GDAtools-1.5/GDAtools/R/translate.logit.R | 362 ++++++++++++------------- GDAtools-1.5/GDAtools/man/assoc.catcont.Rd |only GDAtools-1.5/GDAtools/man/assoc.twocat.Rd |only GDAtools-1.5/GDAtools/man/catdesc.Rd |only GDAtools-1.5/GDAtools/man/conc.ellipse.Rd | 14 GDAtools-1.5/GDAtools/man/condesc.Rd |only GDAtools-1.5/GDAtools/man/ggadd_ellipses.Rd |only GDAtools-1.5/GDAtools/man/ggadd_interaction.Rd |only GDAtools-1.5/GDAtools/man/ggadd_supvar.Rd |only GDAtools-1.5/GDAtools/man/ggcloud_indiv.Rd |only GDAtools-1.5/GDAtools/man/ggcloud_variables.Rd |only GDAtools-1.5/GDAtools/man/prop.wtable.Rd | 2 GDAtools-1.5/GDAtools/man/translate.logit.Rd | 13 GDAtools-1.5/GDAtools/man/wtable.Rd | 2 29 files changed, 331 insertions(+), 280 deletions(-)
Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users
define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and
resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time,
applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values,
exporting data cubes as 'netCDF' or 'GeoTIFF' files, and plotting. The package implements lazy evaluation and
multithreading. All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries.
See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] (<https://orcid.org/0000-0001-5281-3896>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb],
Lewis Van Winkle [cph],
Ole Christian Eidheim [cph],
Niels Lohmann [cph],
Howard Hinnant [cph],
Adrian Colomitchi [cph],
Florian Dang [cph],
Paul Thompson [cph],
Tomasz Kamiński [cph]
Maintainer: Marius Appel <marius.appel@uni-muenster.de>
Diff between gdalcubes versions 0.2.4 dated 2020-02-02 and 0.2.5 dated 2020-05-17
gdalcubes-0.2.4/gdalcubes/man/as_stars.Rd |only gdalcubes-0.2.5/gdalcubes/DESCRIPTION | 10 gdalcubes-0.2.5/gdalcubes/MD5 | 49 +- gdalcubes-0.2.5/gdalcubes/NAMESPACE | 1 gdalcubes-0.2.5/gdalcubes/NEWS.md | 5 gdalcubes-0.2.5/gdalcubes/R/animate.R | 1 gdalcubes-0.2.5/gdalcubes/R/coerce.R | 43 -- gdalcubes-0.2.5/gdalcubes/R/cube.R | 2 gdalcubes-0.2.5/gdalcubes/build/vignette.rds |binary gdalcubes-0.2.5/gdalcubes/inst/doc/MODIS.R | 16 gdalcubes-0.2.5/gdalcubes/inst/doc/MODIS.html | 193 ++++------ gdalcubes-0.2.5/gdalcubes/man/add_images.Rd | 9 gdalcubes-0.2.5/gdalcubes/man/animate.Rd | 14 gdalcubes-0.2.5/gdalcubes/man/apply_pixel.cube.Rd | 3 gdalcubes-0.2.5/gdalcubes/man/create_image_collection.Rd | 9 gdalcubes-0.2.5/gdalcubes/man/cube_view.Rd | 17 gdalcubes-0.2.5/gdalcubes/man/gdalcubes.Rd | 1 gdalcubes-0.2.5/gdalcubes/man/gdalcubes_options.Rd | 10 gdalcubes-0.2.5/gdalcubes/man/gdalcubes_start_server.Rd | 9 gdalcubes-0.2.5/gdalcubes/man/image_mask.Rd | 10 gdalcubes-0.2.5/gdalcubes/man/plot.cube.Rd | 22 - gdalcubes-0.2.5/gdalcubes/man/raster_cube.Rd | 3 gdalcubes-0.2.5/gdalcubes/man/raster_cube_dummy.Rd | 3 gdalcubes-0.2.5/gdalcubes/man/write_ncdf.Rd | 13 gdalcubes-0.2.5/gdalcubes/man/write_tif.Rd | 15 gdalcubes-0.2.5/gdalcubes/src/gdalcubes/src/external/json.hpp | 2 26 files changed, 242 insertions(+), 218 deletions(-)
Title: Collection of Scripts for Interface Between 'Cornerstone' and
'R'
Description: Collection of generic 'R' scripts which enable you to use existing 'R' routines in 'Cornerstone'.
The desktop application 'Cornerstone' (<https://www.camline.com/en/products/cornerstone/cornerstone-core.html>)
is a data analysis software provided by 'camLine' that empowers engineering teams to find solutions even faster.
The engineers incorporate intensified hands-on statistics into their projects.
They benefit from an intuitive and uniquely designed graphical Workmap concept: you design
experiments (DoE) and explore data, analyze dependencies, and find answers you can act upon,
immediately, interactively, and without any programming.
While 'Cornerstone's' interface to the statistical programming language 'R' has been available
since version 6.0, the latest interface with 'R' is even much more efficient.
'Cornerstone' release 7.1.1 allows you to integrate user defined 'R' packages directly into the
standard 'Cornerstone' GUI.
Your engineering team stays in 'Cornerstone's' graphical working environment and can apply 'R'
routines, immediately and without the need to deal with programming code.
Additionally, your 'R' programming team develops corresponding 'R' packages detached from
'Cornerstone' in their favorite 'R' environment.
Learn how to use 'R' packages in 'Cornerstone' 7.1.1 on 'camLineTV' YouTube channel
(<https://www.youtube.com/watch?v=HEQHwq_laXU>) (available in German).
Author: Dirk Surmann [aut, cre] (<https://orcid.org/0000-0003-0873-137X>)
Maintainer: Dirk Surmann <dirk.surmann@camline.academy>
Diff between CornerstoneR versions 1.1.0 dated 2019-02-12 and 2.0.0 dated 2020-05-17
CornerstoneR-1.1.0/CornerstoneR/R/carstats.R |only CornerstoneR-1.1.0/CornerstoneR/inst/variablesdialog/outScriptVar.xml |only CornerstoneR-1.1.0/CornerstoneR/tests/testthat/Rplots.pdf |only CornerstoneR-2.0.0/CornerstoneR/DESCRIPTION | 33 CornerstoneR-2.0.0/CornerstoneR/MD5 | 184 ++- CornerstoneR-2.0.0/CornerstoneR/NAMESPACE | 14 CornerstoneR-2.0.0/CornerstoneR/NEWS.md | 15 CornerstoneR-2.0.0/CornerstoneR/R/data.R |only CornerstoneR-2.0.0/CornerstoneR/R/fitFunction.R | 234 ++-- CornerstoneR-2.0.0/CornerstoneR/R/helper.R | 63 + CornerstoneR-2.0.0/CornerstoneR/R/localInterface.R | 2 CornerstoneR-2.0.0/CornerstoneR/R/matchNearestNeighbor.R |only CornerstoneR-2.0.0/CornerstoneR/R/mosaicPlot.R | 67 - CornerstoneR-2.0.0/CornerstoneR/R/randomForest.R | 39 CornerstoneR-2.0.0/CornerstoneR/R/randomForestPredict.R | 11 CornerstoneR-2.0.0/CornerstoneR/R/redirectDataset.R |only CornerstoneR-2.0.0/CornerstoneR/R/reshapeLong.R | 11 CornerstoneR-2.0.0/CornerstoneR/R/reshapeTranspose.R |only CornerstoneR-2.0.0/CornerstoneR/R/reshapeWide.R | 109 + CornerstoneR-2.0.0/CornerstoneR/R/zzz.R | 1 CornerstoneR-2.0.0/CornerstoneR/README.md | 50 CornerstoneR-2.0.0/CornerstoneR/build |only CornerstoneR-2.0.0/CornerstoneR/data/rundata.rda |only CornerstoneR-2.0.0/CornerstoneR/data/titanic.rda |only CornerstoneR-2.0.0/CornerstoneR/inst/csdata/functionList.txt | 15 CornerstoneR-2.0.0/CornerstoneR/inst/doc |only CornerstoneR-2.0.0/CornerstoneR/inst/variablesdialog/fitFunction.xml | 6 CornerstoneR-2.0.0/CornerstoneR/inst/variablesdialog/randomForest.xml | 4 CornerstoneR-2.0.0/CornerstoneR/inst/variablesdialog/redirectDataset.xml |only CornerstoneR-2.0.0/CornerstoneR/inst/variablesdialog/reshapeTranspose.xml |only CornerstoneR-2.0.0/CornerstoneR/inst/variablesdialog/reshapeWide.xml | 3 CornerstoneR-2.0.0/CornerstoneR/man/CornerstoneR-package.Rd | 16 CornerstoneR-2.0.0/CornerstoneR/man/LocalInterface.Rd | 178 +-- CornerstoneR-2.0.0/CornerstoneR/man/carstats.Rd | 25 CornerstoneR-2.0.0/CornerstoneR/man/fitFunction.Rd | 223 ++- CornerstoneR-2.0.0/CornerstoneR/man/matchNearestNeighbor.Rd |only CornerstoneR-2.0.0/CornerstoneR/man/mosaicPlot.Rd | 84 - CornerstoneR-2.0.0/CornerstoneR/man/randomForest.Rd | 213 +-- CornerstoneR-2.0.0/CornerstoneR/man/randomForestPredict.Rd | 103 - CornerstoneR-2.0.0/CornerstoneR/man/redirectDataset.Rd |only CornerstoneR-2.0.0/CornerstoneR/man/reshapeLong.Rd | 130 +- CornerstoneR-2.0.0/CornerstoneR/man/reshapeTranspose.Rd |only CornerstoneR-2.0.0/CornerstoneR/man/reshapeWide.Rd | 136 +- CornerstoneR-2.0.0/CornerstoneR/man/rundata.Rd |only CornerstoneR-2.0.0/CornerstoneR/man/titanic.Rd |only CornerstoneR-2.0.0/CornerstoneR/tests/testthat/test_fitFunction.R | 569 +++++++++- CornerstoneR-2.0.0/CornerstoneR/tests/testthat/test_helper.R | 54 CornerstoneR-2.0.0/CornerstoneR/tests/testthat/test_matchNearestNeighbor.R |only CornerstoneR-2.0.0/CornerstoneR/tests/testthat/test_mosaicPlot.R | 49 CornerstoneR-2.0.0/CornerstoneR/tests/testthat/test_randomForest.R | 14 CornerstoneR-2.0.0/CornerstoneR/tests/testthat/test_redirectDataset.R |only CornerstoneR-2.0.0/CornerstoneR/tests/testthat/test_reshape.R | 219 +++ CornerstoneR-2.0.0/CornerstoneR/vignettes |only 53 files changed, 2075 insertions(+), 799 deletions(-)
Title: Filtering Matrix for Flow Mapping
Description: Functions to prepare and filter an origin-destination matrix for thematic flow mapping purposes.
This comes after Bahoken, Francoise (2016), Mapping flow matrix a contribution, PhD in Geography - Territorial sciences. See Bahoken (2017) <doi:10.4000/netcom.2565>.
Author: Sylvain Blondeau [aut, cre],
Francoise Bahoken [aut]
Maintainer: Sylvain Blondeau <blondeau.sylvain@yahoo.fr>
Diff between cartograflow versions 1.0.0 dated 2019-05-10 and 1.0.1 dated 2020-05-17
cartograflow-1.0.0/cartograflow/inst/doc/cartograflow.R |only cartograflow-1.0.0/cartograflow/inst/doc/cartograflow.Rmd |only cartograflow-1.0.0/cartograflow/inst/doc/cartograflow.html |only cartograflow-1.0.0/cartograflow/vignettes/cartograflow.Rmd |only cartograflow-1.0.1/cartograflow/DESCRIPTION | 20 cartograflow-1.0.1/cartograflow/MD5 | 94 ++-- cartograflow-1.0.1/cartograflow/NAMESPACE | 5 cartograflow-1.0.1/cartograflow/R/data.R | 10 cartograflow-1.0.1/cartograflow/R/flowanalysis.R | 133 +++-- cartograflow-1.0.1/cartograflow/R/flowcarre.R | 123 ++--- cartograflow-1.0.1/cartograflow/R/flowcontig.R | 187 +++---- cartograflow-1.0.1/cartograflow/R/flowdist.R | 87 ++- cartograflow-1.0.1/cartograflow/R/flowgini.R | 135 ++--- cartograflow-1.0.1/cartograflow/R/flowjointure.R | 96 ++-- cartograflow-1.0.1/cartograflow/R/flowmap.R | 235 ++++++---- cartograflow-1.0.1/cartograflow/R/flowreduct.R | 118 ++--- cartograflow-1.0.1/cartograflow/R/flowstructmat.R | 22 cartograflow-1.0.1/cartograflow/R/flowtabmat.R | 64 +- cartograflow-1.0.1/cartograflow/R/flowtype.R | 174 ++++--- cartograflow-1.0.1/cartograflow/R/package.R | 13 cartograflow-1.0.1/cartograflow/README.md |only cartograflow-1.0.1/cartograflow/build/vignette.rds |binary cartograflow-1.0.1/cartograflow/inst/doc/cartograflow_general.R |only cartograflow-1.0.1/cartograflow/inst/doc/cartograflow_general.Rmd |only cartograflow-1.0.1/cartograflow/inst/doc/cartograflow_general.html |only cartograflow-1.0.1/cartograflow/man/cartograflow.Rd | 9 cartograflow-1.0.1/cartograflow/man/flowanalysis.Rd | 68 +- cartograflow-1.0.1/cartograflow/man/flowcarre.Rd | 59 +- cartograflow-1.0.1/cartograflow/man/flowcontig.Rd | 47 +- cartograflow-1.0.1/cartograflow/man/flowdist.Rd | 40 - cartograflow-1.0.1/cartograflow/man/flowgini.Rd | 38 - cartograflow-1.0.1/cartograflow/man/flowjointure.Rd | 37 + cartograflow-1.0.1/cartograflow/man/flowmap.Rd | 120 +++-- cartograflow-1.0.1/cartograflow/man/flowreduct.Rd | 63 +- cartograflow-1.0.1/cartograflow/man/flows.Rd | 4 cartograflow-1.0.1/cartograflow/man/flowstructmat.Rd | 8 cartograflow-1.0.1/cartograflow/man/flowtabmat.Rd | 19 cartograflow-1.0.1/cartograflow/man/flowtype.Rd | 52 +- cartograflow-1.0.1/cartograflow/man/mat_ex.Rd | 4 cartograflow-1.0.1/cartograflow/tests/testthat/test_data.R |only cartograflow-1.0.1/cartograflow/tests/testthat/test_flowanalysis.R | 117 +++- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowcarre.R | 107 ++-- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowcontig.R | 172 +++---- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowdist.R | 57 +- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowgini.R | 136 ++--- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowjointure.R | 103 ++-- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowmap.R | 205 +++++--- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowreduct.R | 91 ++- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowstructmat.R | 33 - cartograflow-1.0.1/cartograflow/tests/testthat/test_flowtabmat.R | 75 +-- cartograflow-1.0.1/cartograflow/tests/testthat/test_flowtype.R | 154 ++++-- cartograflow-1.0.1/cartograflow/tests/testthat/test_package.R |only cartograflow-1.0.1/cartograflow/vignettes/cartograflow_general.Rmd |only cartograflow-1.0.1/cartograflow/vignettes/data/MOBPRO_MGP.csv |only 54 files changed, 1891 insertions(+), 1443 deletions(-)
Title: Mediterranean Forest Simulation
Description: Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>].
Author: Miquel De Cáceres [aut, cre],
Shengli Huang [aut],
Víctor Granda [aut],
Antoine Cabon [aut],
Jordi Martínez-Vilalta [ctb],
Maurizio Mencuccini [ctb],
Nicolas Martin-StPaul [ctb]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>
Diff between medfate versions 0.9.0 dated 2020-03-22 and 1.0.0 dated 2020-05-17
medfate-0.9.0/medfate/R/plot.growth.R |only medfate-1.0.0/medfate/DESCRIPTION | 18 medfate-1.0.0/medfate/MD5 | 177 medfate-1.0.0/medfate/NAMESPACE | 1 medfate-1.0.0/medfate/R/RcppExports.R | 134 medfate-1.0.0/medfate/R/defaultControl.R | 32 medfate-1.0.0/medfate/R/extractSubdaily.R |only medfate-1.0.0/medfate/R/hydraulics_supplyFunctionPlot.R | 20 medfate-1.0.0/medfate/R/modifySpParams.R | 11 medfate-1.0.0/medfate/R/plot.spwb.R | 689 +-- medfate-1.0.0/medfate/R/plot.spwb_day.R | 200 - medfate-1.0.0/medfate/R/plotutils.R | 169 medfate-1.0.0/medfate/R/spwb_ldrCalibration.R | 7 medfate-1.0.0/medfate/R/spwb_ldrOptimization.R | 32 medfate-1.0.0/medfate/R/spwb_maximumTranspirationRatioPlot.R | 8 medfate-1.0.0/medfate/R/spwb_resistances.R | 38 medfate-1.0.0/medfate/R/spwb_sensitivity.R | 36 medfate-1.0.0/medfate/R/spwb_stress.R | 16 medfate-1.0.0/medfate/R/spwb_validation.R | 6 medfate-1.0.0/medfate/R/spwb_waterUseEfficiency.R | 41 medfate-1.0.0/medfate/R/summary.spwb.R | 12 medfate-1.0.0/medfate/R/transp_stomatalRegulationPlot.R | 21 medfate-1.0.0/medfate/data/SpParamsMED.rda |binary medfate-1.0.0/medfate/data/SpParamsUS.rda |binary medfate-1.0.0/medfate/data/exampleforestMED.rda |binary medfate-1.0.0/medfate/inst/doc/AdvancedWaterEnergyBalance.R | 15 medfate-1.0.0/medfate/inst/doc/AdvancedWaterEnergyBalance.Rmd | 22 medfate-1.0.0/medfate/inst/doc/AdvancedWaterEnergyBalance.html | 829 ++-- medfate-1.0.0/medfate/inst/doc/BasicWaterBalance.R | 10 medfate-1.0.0/medfate/inst/doc/BasicWaterBalance.Rmd | 23 medfate-1.0.0/medfate/inst/doc/BasicWaterBalance.html | 909 ++-- medfate-1.0.0/medfate/inst/doc/ForestGrowth.R | 62 medfate-1.0.0/medfate/inst/doc/ForestGrowth.Rmd | 76 medfate-1.0.0/medfate/inst/doc/ForestGrowth.html | 613 ++- medfate-1.0.0/medfate/inst/doc/PackageOverview.html | 298 + medfate-1.0.0/medfate/inst/include/medfate_RcppExports.h | 24 medfate-1.0.0/medfate/man/SpParams.Rd | 165 medfate-1.0.0/medfate/man/biophysics.Rd | 26 medfate-1.0.0/medfate/man/carbon.Rd |only medfate-1.0.0/medfate/man/defaultControl.Rd | 85 medfate-1.0.0/medfate/man/extractSubdaily.Rd |only medfate-1.0.0/medfate/man/forest2spwbInput.Rd | 64 medfate-1.0.0/medfate/man/fuel_properties.Rd | 9 medfate-1.0.0/medfate/man/growth.Rd | 13 medfate-1.0.0/medfate/man/hydraulics_conductancefunctions.Rd | 6 medfate-1.0.0/medfate/man/hydraulics_scalingconductance.Rd | 9 medfate-1.0.0/medfate/man/moisture.Rd | 10 medfate-1.0.0/medfate/man/pheno_updateLeaves.Rd | 36 medfate-1.0.0/medfate/man/photo.Rd | 36 medfate-1.0.0/medfate/man/plant_values.Rd | 2 medfate-1.0.0/medfate/man/plot.spwb.Rd | 74 medfate-1.0.0/medfate/man/plot.spwb_day.Rd | 64 medfate-1.0.0/medfate/man/resetInputs.Rd |only medfate-1.0.0/medfate/man/root.Rd | 9 medfate-1.0.0/medfate/man/soil.Rd | 2 medfate-1.0.0/medfate/man/soil_texture.Rd | 2 medfate-1.0.0/medfate/man/soil_thermodynamics.Rd | 2 medfate-1.0.0/medfate/man/spwb.Rd | 98 medfate-1.0.0/medfate/man/spwb_day.Rd | 54 medfate-1.0.0/medfate/man/spwb_ldrCalibration.Rd | 4 medfate-1.0.0/medfate/man/spwb_sensitivity.Rd | 30 medfate-1.0.0/medfate/man/spwb_stress.Rd | 1 medfate-1.0.0/medfate/man/transpiration.Rd | 63 medfate-1.0.0/medfate/src/RcppExports.cpp | 424 +- medfate-1.0.0/medfate/src/biophysicsutils.cpp | 49 medfate-1.0.0/medfate/src/biophysicsutils.h | 7 medfate-1.0.0/medfate/src/carbon.cpp |only medfate-1.0.0/medfate/src/carbon.h |only medfate-1.0.0/medfate/src/fuelmoisture.cpp | 72 medfate-1.0.0/medfate/src/fuelmoisture.h | 2 medfate-1.0.0/medfate/src/growth.cpp | 1848 +++++++--- medfate-1.0.0/medfate/src/growth.h | 12 medfate-1.0.0/medfate/src/hydraulics.cpp | 11 medfate-1.0.0/medfate/src/hydraulics.h | 4 medfate-1.0.0/medfate/src/lightextinction.cpp | 4 medfate-1.0.0/medfate/src/modelInput.cpp | 605 ++- medfate-1.0.0/medfate/src/modelInput.h | 4 medfate-1.0.0/medfate/src/phenology.cpp | 186 - medfate-1.0.0/medfate/src/phenology.h | 9 medfate-1.0.0/medfate/src/photosynthesis.cpp | 44 medfate-1.0.0/medfate/src/photosynthesis.h | 6 medfate-1.0.0/medfate/src/root.cpp | 114 medfate-1.0.0/medfate/src/root.h | 2 medfate-1.0.0/medfate/src/spwb.cpp | 1468 +++---- medfate-1.0.0/medfate/src/spwb.h | 32 medfate-1.0.0/medfate/src/tissuemoisture.cpp | 85 medfate-1.0.0/medfate/src/tissuemoisture.h | 5 medfate-1.0.0/medfate/src/transpiration.cpp | 612 +-- medfate-1.0.0/medfate/src/transpiration.h | 5 medfate-1.0.0/medfate/src/woodformation.cpp |only medfate-1.0.0/medfate/src/woodformation.h |only medfate-1.0.0/medfate/vignettes/AdvancedWaterEnergyBalance.Rmd | 22 medfate-1.0.0/medfate/vignettes/BasicWaterBalance.Rmd | 23 medfate-1.0.0/medfate/vignettes/ForestGrowth.Rmd | 76 94 files changed, 7202 insertions(+), 3942 deletions(-)
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu <chong@purdue.edu>
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gss versions 2.2-0 dated 2020-05-04 and 2.2-1 dated 2020-05-17
gss-2.2-0/gss/src/dchdc0.f |only gss-2.2-1/gss/ChangeLog | 6 ++++ gss-2.2-1/gss/DESCRIPTION | 8 +++--- gss-2.2-1/gss/MD5 | 21 ++++++++--------- gss-2.2-1/gss/R/family.R | 46 +++++++++++++++++++++++--------------- gss-2.2-1/gss/R/family.cv.R | 12 +++------ gss-2.2-1/gss/R/family.proj.R | 5 ++-- gss-2.2-1/gss/R/project.sscden1.R | 2 - gss-2.2-1/gss/R/project.ssden1.R | 2 - gss-2.2-1/gss/R/project.sshzd1.R | 2 - gss-2.2-1/gss/R/ssanova.R | 6 ++-- gss-2.2-1/gss/src/init.c | 2 - 12 files changed, 61 insertions(+), 51 deletions(-)
Title: Interface to 'ECMWF' and 'CDS' Data Web Services
Description: Programmatic interface to the European Centre for Medium-Range
Weather Forecasts dataset web services (ECMWF; <https://www.ecmwf.int/>)
and Copernicus's Climate Data Store (CDS;
<https://cds.climate.copernicus.eu>). Allows for easy downloads of weather
forecasts and climate reanalysis data in R.
Author: Koen Hufkens [aut, cre] (<https://orcid.org/0000-0002-5070-8109>),
Reto Stauffer [ctb] (<https://orcid.org/0000-0002-3798-5507>),
Elio Campitelli [ctb] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between ecmwfr versions 1.2.2 dated 2020-02-13 and 1.2.3 dated 2020-05-17
DESCRIPTION | 6 - MD5 | 47 ++++----- R/addin.R | 2 R/wf_archetype.R | 19 ++- R/wf_check_request.R | 41 ++++++-- R/wf_datasets.R | 4 R/wf_delete.R | 4 R/wf_get_key.R | 10 +- R/wf_request.R | 162 +++++++++++++++++++-------------- R/wf_set_key.R | 27 +++-- R/wf_transfer.R | 92 +++++++++--------- R/zzz.R | 100 ++++++++++++-------- build/vignette.rds |binary inst/doc/advanced_vignette.Rmd | 2 inst/doc/advanced_vignette.html | 16 +-- inst/doc/cds_vignette.Rmd | 2 inst/doc/cds_vignette.html | 16 +-- inst/doc/webapi_vignette.Rmd | 2 inst/doc/webapi_vignette.html | 18 +-- man/figures |only tests/testthat/test_cds.R | 64 ++++++++++--- tests/testthat/test_helper_functions.R | 2 vignettes/advanced_vignette.Rmd | 2 vignettes/cds_vignette.Rmd | 2 vignettes/webapi_vignette.Rmd | 2 25 files changed, 382 insertions(+), 260 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.5.1 dated 2020-04-15 and 0.5.2 dated 2020-05-17
DESCRIPTION | 10 MD5 | 106 ++++---- NAMESPACE | 22 + R/ANOVA.R | 8 R/ARMA.R | 56 ++-- R/Binary_ANOVA.R | 8 R/Boost.R | 14 - R/Co_PM_dep.R | 10 R/Dependence.R | 8 R/Dependence_base.R | 4 R/FSD.R | 4 R/Internal_Functions.R | 73 ++++++ R/LPM_UPM_VaR.R | 52 +++- R/Multivariate_Regression.R | 38 +-- R/NNS_Distance.R | 2 R/NNS_VAR.R | 224 ++++++++++++++----- R/NNS_meboot.R |only R/NNS_term_matrix.R | 4 R/Numerical_Differentiation.R | 4 R/Partial_Moments.R | 33 +- R/Partition_Map.R | 6 R/Regression.R | 47 ++- R/SSD.R | 4 R/Seasonality_Test.R | 10 R/Stack.R | 13 - R/TSD.R | 4 R/dy_d_wrt.R | 6 R/dy_dx.R | 8 R/gvload.R | 19 + inst/doc/NNSvignette_Classification.R | 6 inst/doc/NNSvignette_Classification.Rmd | 6 inst/doc/NNSvignette_Classification.html | 14 - inst/doc/NNSvignette_Clustering_and_Regression.R | 6 inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 6 inst/doc/NNSvignette_Clustering_and_Regression.html | 14 - inst/doc/NNSvignette_Correlation_and_Dependence.R | 22 + inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 22 + inst/doc/NNSvignette_Correlation_and_Dependence.html | 40 +-- inst/doc/NNSvignette_Forecasting.R | 9 inst/doc/NNSvignette_Forecasting.Rmd | 19 + inst/doc/NNSvignette_Forecasting.html | 35 +- inst/doc/NNSvignette_Partial_Moments.R | 4 inst/doc/NNSvignette_Partial_Moments.Rmd | 4 inst/doc/NNSvignette_Partial_Moments.html | 9 man/LPM.VaR.Rd | 10 man/NNS.ARMA.Rd | 6 man/NNS.VAR.Rd | 24 ++ man/NNS.dep.Rd | 4 man/NNS.meboot.Rd |only man/UPM.VaR.Rd | 10 vignettes/NNSvignette_Classification.Rmd | 6 vignettes/NNSvignette_Clustering_and_Regression.Rmd | 6 vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 22 + vignettes/NNSvignette_Forecasting.Rmd | 19 + vignettes/NNSvignette_Partial_Moments.Rmd | 4 55 files changed, 725 insertions(+), 399 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-01 0.14
2012-01-26 0.13
2011-05-15 0.11
2010-08-16 0.10
2010-07-24 0.9
2010-03-20 0.7
2010-02-05 0.5
2010-02-03 0.4
2010-01-22 0.3
2010-01-15 0.1
Title: Conduct Simulation Studies with a Minimal Amount of Source Code
Description: Tool for statistical simulations that have two components.
One component generates the data and the other one
analyzes the data. The main aims of the package are the reduction
of the administrative source code (mainly loops and management code for the
results) and a simple applicability of the package that allows the user to
quickly learn how to work with it. Parallel computing is
also supported. Finally, convenient functions are provided to summarize the
simulation results.
Author: Marsel Scheer [aut, cre]
Maintainer: Marsel Scheer <scheer@freescience.de>
Diff between simTool versions 1.1.5 dated 2020-03-15 and 1.1.6 dated 2020-05-17
simTool-1.1.5/simTool/R/meanAndNormCI.R |only simTool-1.1.5/simTool/R/simTool-package.R |only simTool-1.1.5/simTool/man/meanAndNormCI.Rd |only simTool-1.1.5/simTool/man/simTool-package.Rd |only simTool-1.1.6/simTool/DESCRIPTION | 12 simTool-1.1.6/simTool/MD5 | 52 - simTool-1.1.6/simTool/NAMESPACE | 2 simTool-1.1.6/simTool/R/bind_or_combine.R | 11 simTool-1.1.6/simTool/R/data_grid_to_fun.R | 2 simTool-1.1.6/simTool/R/define_simulation.R | 2 simTool-1.1.6/simTool/R/eval_tibbles.R | 153 ++--- simTool-1.1.6/simTool/R/expand_tibble.R | 6 simTool-1.1.6/simTool/R/frame_simulation.R | 3 simTool-1.1.6/simTool/R/print.eval_tibbles.R | 3 simTool-1.1.6/simTool/R/proc_grid_to_fun.R | 5 simTool-1.1.6/simTool/R/unnest_simulation.R | 15 simTool-1.1.6/simTool/build/vignette.rds |binary simTool-1.1.6/simTool/inst/doc/simTool.R | 268 ++++----- simTool-1.1.6/simTool/inst/doc/simTool.Rmd | 9 simTool-1.1.6/simTool/inst/doc/simTool.html | 209 +++++-- simTool-1.1.6/simTool/man/eval_tibbles.Rd | 129 ++-- simTool-1.1.6/simTool/man/expand_tibble.Rd | 6 simTool-1.1.6/simTool/man/print.eval_tibbles.Rd | 3 simTool-1.1.6/simTool/tests/testthat/test_bind_or_combine.R | 6 simTool-1.1.6/simTool/tests/testthat/test_eval_tibbles.R | 295 ++++++---- simTool-1.1.6/simTool/tests/testthat/test_flatten_results.R | 6 simTool-1.1.6/simTool/tests/testthat/test_frame_simulation.R | 63 +- simTool-1.1.6/simTool/tests/testthat/test_unnest_simulation.R | 24 simTool-1.1.6/simTool/vignettes/simTool.Rmd | 9 29 files changed, 783 insertions(+), 510 deletions(-)
Title: Simulating and Analyzing Time to Event Data in the Presence of
Population Mortality
Description: Implements two methods: a nonparametric risk adjustment and a
data imputation method that use general population mortality tables to allow a
correct analysis of time to disease recurrence. Also includes a powerful set of
object oriented survival data simulation functions.
Author: Tomaz Stupnik [aut, cre],
Maja Pohar Perme [ctb]
Maintainer: Tomaz Stupnik <tomaz.stupnik@guest.arnes.si>
Diff between missDeaths versions 2.5.1 dated 2019-04-24 and 2.6 dated 2020-05-17
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- man/md.simdataobject.Rd | 3 --- man/plus-md.simdata-md.simdataobject-method.Rd | 3 --- src/Makevars | 5 ++++- src/simcensor.cpp | 6 +++--- 6 files changed, 16 insertions(+), 19 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.3.8 dated 2019-11-08 and 0.3.9 dated 2020-05-17
DESCRIPTION | 8 - MD5 | 14 - NEWS.md | 4 R/jskm.R | 2 R/svyjskm.R | 2 build/vignette.rds |binary inst/doc/jskm.R | 10 - inst/doc/jskm.html | 383 ++++++++++++++++++++++++++++++++++++++++------------- 8 files changed, 316 insertions(+), 107 deletions(-)
Title: A Tool for Downloading Functional Traits Data for Plant Species
Description: Plant ecologists often need to collect "traits" data
about plant species which are often scattered among various
databases: TR8 contains a set of tools which take care of
automatically retrieving some of those functional traits data
for plant species from publicly available databases (Biolflor,
The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg
values for Italian Flora, Mycorrhizal intensity databases, Catminat, BROT,
PLANTS, Jepson Flora Project).
The TR8 name, inspired by "car plates" jokes, was chosen since
it both reminds of the main object of the package and is
extremely short to type.
Author: Gionata Bocci <boccigionata@gmail.com>
Maintainer: Gionata Bocci <boccigionata@gmail.com>
Diff between TR8 versions 0.9.20 dated 2019-04-10 and 0.9.21 dated 2020-05-17
TR8-0.9.20/TR8/data/column_list.rda |only TR8-0.9.20/TR8/data/imkerbond_data.rda |only TR8-0.9.20/TR8/data/leda_lookup.rda |only TR8-0.9.20/TR8/data/traits_Biolflor.rda |only TR8-0.9.20/TR8/data/traits_eco.rda |only TR8-0.9.21/TR8/DESCRIPTION | 13 +- TR8-0.9.21/TR8/MD5 | 60 +++++----- TR8-0.9.21/TR8/NAMESPACE | 3 TR8-0.9.21/TR8/NEWS | 12 ++ TR8-0.9.21/TR8/R/biolflor.R | 3 TR8-0.9.21/TR8/R/brot_data.R | 2 TR8-0.9.21/TR8/R/catminat_download.R | 4 TR8-0.9.21/TR8/R/eflora.R | 2 TR8-0.9.21/TR8/R/leda_download.R | 1 TR8-0.9.21/TR8/R/tr8.R | 6 - TR8-0.9.21/TR8/R/tr8_gui.R | 164 +++++++++++++----------------- TR8-0.9.21/TR8/build/vignette.rds |binary TR8-0.9.21/TR8/data/available_tr8.rda |binary TR8-0.9.21/TR8/data/biolflor_lookup.rda |binary TR8-0.9.21/TR8/data/column_list.R |only TR8-0.9.21/TR8/data/imkerbond_data.R |only TR8-0.9.21/TR8/data/leda_lookup.R |only TR8-0.9.21/TR8/data/pignatti.rda |binary TR8-0.9.21/TR8/data/ref_PLANTS.rda |binary TR8-0.9.21/TR8/data/traits_Biolflor.R |only TR8-0.9.21/TR8/data/traits_eco.R |only TR8-0.9.21/TR8/inst/doc/Expanding_TR8.R | 1 TR8-0.9.21/TR8/inst/doc/Expanding_TR8.pdf |binary TR8-0.9.21/TR8/inst/doc/TR8.R | 1 TR8-0.9.21/TR8/inst/doc/TR8.pdf |binary TR8-0.9.21/TR8/inst/doc/TR8_workflow.R | 1 TR8-0.9.21/TR8/inst/doc/TR8_workflow.pdf |binary TR8-0.9.21/TR8/inst/shiny_interface |only TR8-0.9.21/TR8/man/TR8-package.Rd | 2 TR8-0.9.21/TR8/man/available_tr8.Rd | 4 TR8-0.9.21/TR8/man/tr8.Rd | 9 + 36 files changed, 147 insertions(+), 141 deletions(-)
Title: Perform and Display Google Trends Queries
Description: An interface for retrieving and displaying the information
returned online by Google Trends is provided. Trends (number of
hits) over the time as well as geographic representation of the
results can be displayed.
Author: Philippe Massicotte [aut, cre],
Dirk Eddelbuettel [aut]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between gtrendsR versions 1.4.5 dated 2020-05-06 and 1.4.6 dated 2020-05-17
DESCRIPTION | 6 - MD5 | 10 - NEWS.md | 4 R/related_topics.R | 146 ++++++++++++++------------ README.md | 4 inst/tinytest/test_encoding_does_not_change.R | 9 + 6 files changed, 100 insertions(+), 79 deletions(-)
Title: Variable-Lag Time Series Causality Inference Framework
Description: A framework to infer causality on a pair of time series of real numbers based on variable-lag Granger causality and transfer entropy. Typically, Granger causality and transfer entropy have an assumption of a fixed and constant time delay between the cause and effect. However, for a non-stationary time series, this assumption is not true. For example, considering two time series of velocity of person A and person B where B follows A. At some time, B stops tying his shoes, then running to catch up A. The fixed-lag assumption is not true in this case. We propose a framework that allows variable-lags between cause and effect in Granger causality and transfer entropy to allow them to deal with variable-lag non-stationary time series. Please see Chainarong Amornbunchornvej, Elena Zheleva, and Tanya Berger-Wolf (2019) <arXiv:1912.10829> when referring to this package in publications.
Author: Chainarong Amornbunchornvej [aut, cre]
(<https://orcid.org/0000-0003-3131-0370>)
Maintainer: Chainarong Amornbunchornvej <grandca@gmail.com>
Diff between VLTimeCausality versions 0.1.0 dated 2019-12-20 and 0.1.1 dated 2020-05-17
DESCRIPTION | 10 ++++----- MD5 | 36 +++++++++++++++++----------------- NAMESPACE | 3 +- NEWS.md | 4 +++ R/MultipleTSsimulation.R | 20 +++++++++++++++--- R/TSsimulation.R | 25 +++++++++++++++++++---- R/VLtransferEntropy.R | 20 +++++++++++++++--- R/multipleVLTransferEntropy.R | 5 ++-- README.md | 21 +++++++++++++++---- inst/CITATION | 7 ++++-- inst/VLTimeCausality_0.1.0.pdf |binary inst/doc/VLTimeCausality_demo.R | 8 ------- inst/doc/VLTimeCausality_demo.Rmd | 8 ------- inst/doc/VLTimeCausality_demo.html | 19 ++--------------- man/MultipleSimulationVLtimeseries.Rd | 9 +++++--- man/SimpleSimulationVLtimeseries.Rd | 13 +++++++++++- man/VLTransferEntropy.Rd | 9 ++++++-- man/multipleVLTransferEntropy.Rd | 5 +++- vignettes/VLTimeCausality_demo.Rmd | 8 ------- 19 files changed, 138 insertions(+), 92 deletions(-)
More information about VLTimeCausality at CRAN
Permanent link
Title: Feature Extraction from Grouped Data
Description: An R6 implementation for calculating features from grouped data.
The output will be one row for each group.
This functionality is often needed in the feature extraction process of machine learning problems.
Very large datasets are supported, since data is only read into RAM when needed.
Calculation can be done in parallel and the process can be monitored.
Global error handling is supported.
Results are available in one final dataframe.
Author: Quay Au [aut, cre],
Clemens Stachl [ctb],
Ramona Schoedel [ctb],
Theresa Ullmann [ctb],
Andreas Hofheinz [ctb]
Maintainer: Quay Au <quayau@gmail.com>
Diff between fxtract versions 0.9.2 dated 2019-07-03 and 0.9.3 dated 2020-05-17
DESCRIPTION | 10 MD5 | 20 NEWS.md | 3 R/dplyr_wrapper.R | 2 R/xtractor.R | 4 build/vignette.rds |binary inst/doc/fxtract.R | 2 inst/doc/fxtract.html | 197 --- man/Xtractor.Rd | 4 man/studentlife_small.Rd | 4 vignettes/tutorial/img/batchtools.svg | 2032 +++++++++++++++++----------------- 11 files changed, 1053 insertions(+), 1225 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-06 0.0.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-02 1.6.0.2
2019-07-02 1.6.0.1
2018-03-25 1.6.0
2014-10-18 1.5.0
2014-07-09 1.4.0
2014-04-26 1.3.0
2014-03-30 1.2.0
2014-03-13 1.1.0
2013-08-27 1.0.0
2013-04-01 0.9.9
2013-01-27 0.9.8
2012-11-29 0.9.7
2012-11-27 0.9.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-22 2.1
2018-01-29 2.0
2017-03-12 1.2
2016-09-09 1.1
2015-11-23 1.0.1
2015-09-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-06 2.5
2015-07-16 2.2
2014-08-21 2.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-05 1.0
Title: Extra Recipes Steps for Dealing with Unbalanced Data
Description: A dataset with an uneven number of cases in each
class is said to be unbalanced. Many models produce a subpar
performance on unbalanced datasets. A dataset can be balanced by
increasing the number of minority cases using SMOTE 2011
<arXiv:1106.1813>, BorderlineSMOTE 2005 <doi:10.1007/11538059_91> and
ADASYN 2008 <https://ieeexplore.ieee.org/document/4633969>. Or by
decreasing the number of majority cases using NearMiss 2003
<https://www.site.uottawa.ca/~nat/Workshop2003/jzhang.pdf> or Tomek
link removal 1976 <https://ieeexplore.ieee.org/document/4309452>.
Author: Emil Hvitfeldt [aut, cre] (<https://orcid.org/0000-0002-0679-1945>)
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between themis versions 0.1.0 dated 2020-01-13 and 0.1.1 dated 2020-05-17
DESCRIPTION | 38 ++++++++++---------- MD5 | 35 +++++++++--------- NEWS.md |only R/0_imports.R | 74 ++++++++++++++++++++++++++++++++++++++- R/adasyn.R | 6 +-- R/bsmote.R | 4 +- R/bsmote_impl.R | 4 +- R/downsample.R | 5 +- R/misc.R | 7 ++- R/nearmiss.R | 7 +-- R/rose.R | 4 +- R/smote.R | 4 +- R/smote_impl.R | 4 +- R/tomek.R | 6 +-- R/upsample.R | 4 +- README.md | 19 ++++------ man/circle_example.Rd | 6 ++- man/themis-package.Rd | 15 ++++--- tests/testthat/test-smote_impl.R | 10 +++++ 19 files changed, 169 insertions(+), 83 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis, especially raster data. Methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. The package is similar to the 'raster' package; but it is simpler and faster.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Karl Forner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 0.5-8 dated 2020-04-14 and 0.6-8 dated 2020-05-17
terra-0.5-8/terra/ChangeLog |only terra-0.5-8/terra/R/AAAclasses.R |only terra-0.5-8/terra/R/AAgeneric_functions.R |only terra-0.5-8/terra/inst/exdata |only terra-0.5-8/terra/man/warp.Rd |only terra-0.5-8/terra/src/GeographicLib_geodesic.c |only terra-0.5-8/terra/src/GeographicLib_geodesic.h |only terra-0.5-8/terra/src/gdal.cpp |only terra-0.5-8/terra/src/write_mem.cpp |only terra-0.6-8/terra/DESCRIPTION | 40 -- terra-0.6-8/terra/MD5 | 287 +++++++------- terra-0.6-8/terra/NAMESPACE | 2 terra-0.6-8/terra/NEWS |only terra-0.6-8/terra/R/Aclasses.R |only terra-0.6-8/terra/R/Agenerics.R |only terra-0.6-8/terra/R/RcppExports.R |only terra-0.6-8/terra/R/aggregate.R | 23 - terra-0.6-8/terra/R/app.R | 5 terra-0.6-8/terra/R/arith.R | 8 terra-0.6-8/terra/R/coerce.R | 36 + terra-0.6-8/terra/R/crs.R | 18 terra-0.6-8/terra/R/extract.R | 14 terra-0.6-8/terra/R/focal.R | 2 terra-0.6-8/terra/R/gdal.R |only terra-0.6-8/terra/R/generics.R | 99 +++-- terra-0.6-8/terra/R/geom.R | 60 +-- terra-0.6-8/terra/R/init.R | 2 terra-0.6-8/terra/R/interpolate.R | 6 terra-0.6-8/terra/R/messages.R | 36 + terra-0.6-8/terra/R/options.R | 2 terra-0.6-8/terra/R/overlay.R | 2 terra-0.6-8/terra/R/pack.R | 2 terra-0.6-8/terra/R/plot.R | 2 terra-0.6-8/terra/R/plotRaster.R | 2 terra-0.6-8/terra/R/predict.R | 15 terra-0.6-8/terra/R/rast.R | 61 ++- terra-0.6-8/terra/R/read-write.R | 10 terra-0.6-8/terra/R/show.R | 5 terra-0.6-8/terra/R/spatvec.R | 19 terra-0.6-8/terra/R/subset.R | 6 terra-0.6-8/terra/R/tapp.R | 2 terra-0.6-8/terra/R/vect.R | 14 terra-0.6-8/terra/R/zonal.R | 75 ++- terra-0.6-8/terra/R/zoom.R | 16 terra-0.6-8/terra/R/zzz.R | 13 terra-0.6-8/terra/configure | 6 terra-0.6-8/terra/configure.ac | 6 terra-0.6-8/terra/inst/ex |only terra-0.6-8/terra/man/app.Rd | 2 terra-0.6-8/terra/man/area.Rd | 3 terra-0.6-8/terra/man/as.character.Rd | 1 terra-0.6-8/terra/man/as.data.frame.Rd | 2 terra-0.6-8/terra/man/buffer.Rd | 1 terra-0.6-8/terra/man/click.Rd | 2 terra-0.6-8/terra/man/coerce.Rd | 31 + terra-0.6-8/terra/man/compareGeom.Rd | 3 terra-0.6-8/terra/man/contour.Rd | 3 terra-0.6-8/terra/man/crs.Rd | 3 terra-0.6-8/terra/man/density.Rd | 4 terra-0.6-8/terra/man/diff.Rd |only terra-0.6-8/terra/man/dimensions.Rd | 6 terra-0.6-8/terra/man/disaggregate.Rd | 10 terra-0.6-8/terra/man/extent.Rd | 1 terra-0.6-8/terra/man/extract.Rd | 16 terra-0.6-8/terra/man/gdal_info.Rd |only terra-0.6-8/terra/man/geometry.Rd | 2 terra-0.6-8/terra/man/geomtype.Rd | 12 terra-0.6-8/terra/man/isLonLat.Rd | 4 terra-0.6-8/terra/man/local.Rd | 7 terra-0.6-8/terra/man/mask.Rd | 13 terra-0.6-8/terra/man/merge.Rd | 3 terra-0.6-8/terra/man/minmax.Rd | 2 terra-0.6-8/terra/man/modal.Rd | 2 terra-0.6-8/terra/man/names.Rd | 5 terra-0.6-8/terra/man/pack.Rd | 1 terra-0.6-8/terra/man/pairs.Rd | 2 terra-0.6-8/terra/man/persp.Rd | 2 terra-0.6-8/terra/man/plot.Rd | 8 terra-0.6-8/terra/man/plotRGB.Rd | 2 terra-0.6-8/terra/man/predict.Rd | 2 terra-0.6-8/terra/man/project.Rd | 46 +- terra-0.6-8/terra/man/quantile.Rd | 2 terra-0.6-8/terra/man/rast.Rd | 11 terra-0.6-8/terra/man/rasterize.Rd | 18 terra-0.6-8/terra/man/readwrite.Rd | 10 terra-0.6-8/terra/man/rep.Rd |only terra-0.6-8/terra/man/replace-vector.Rd | 3 terra-0.6-8/terra/man/resample.Rd |only terra-0.6-8/terra/man/sample.Rd | 2 terra-0.6-8/terra/man/select.Rd | 2 terra-0.6-8/terra/man/sources.Rd | 3 terra-0.6-8/terra/man/subset-vector.Rd | 2 terra-0.6-8/terra/man/subset.Rd | 2 terra-0.6-8/terra/man/summary.Rd |only terra-0.6-8/terra/man/tapp.Rd | 2 terra-0.6-8/terra/man/terra-package.Rd | 32 - terra-0.6-8/terra/man/values.Rd | 7 terra-0.6-8/terra/man/vect.Rd | 2 terra-0.6-8/terra/man/writeVector.Rd | 17 terra-0.6-8/terra/man/xmin.Rd | 11 terra-0.6-8/terra/man/xyCellFrom.Rd | 12 terra-0.6-8/terra/man/zoom.Rd | 8 terra-0.6-8/terra/src/Makevars.win | 25 - terra-0.6-8/terra/src/RcppExports.cpp | 14 terra-0.6-8/terra/src/RcppModule.cpp | 88 +++- terra-0.6-8/terra/src/aggregate.cpp | 28 + terra-0.6-8/terra/src/area.cpp | 5 terra-0.6-8/terra/src/buffer.cpp | 2 terra-0.6-8/terra/src/crs.cpp | 268 ++++++++++++- terra-0.6-8/terra/src/crs.h | 10 terra-0.6-8/terra/src/distRaster.cpp | 21 - terra-0.6-8/terra/src/distance.cpp | 2 terra-0.6-8/terra/src/extent.cpp | 54 ++ terra-0.6-8/terra/src/extract.cpp | 27 - terra-0.6-8/terra/src/file_utils.cpp | 19 terra-0.6-8/terra/src/file_utils.h | 2 terra-0.6-8/terra/src/gdal_errors.cpp |only terra-0.6-8/terra/src/gdal_errors.h |only terra-0.6-8/terra/src/gdal_info.cpp |only terra-0.6-8/terra/src/gdal_info.h |only terra-0.6-8/terra/src/gdalio.cpp |only terra-0.6-8/terra/src/gdalio.h |only terra-0.6-8/terra/src/memory.cpp | 6 terra-0.6-8/terra/src/polygonize.cpp |only terra-0.6-8/terra/src/progress_bar_simple.hpp | 7 terra-0.6-8/terra/src/project.cpp |only terra-0.6-8/terra/src/raster_coerce.cpp | 115 ++++- terra-0.6-8/terra/src/raster_methods.cpp | 40 +- terra-0.6-8/terra/src/raster_stats.cpp | 30 - terra-0.6-8/terra/src/rasterize.cpp |only terra-0.6-8/terra/src/read.cpp | 54 +- terra-0.6-8/terra/src/read_gdal.cpp | 88 +++- terra-0.6-8/terra/src/read_ogr.cpp | 145 +++++-- terra-0.6-8/terra/src/resample.cpp |only terra-0.6-8/terra/src/sources.cpp | 33 + terra-0.6-8/terra/src/spatBase.h | 83 ++-- terra-0.6-8/terra/src/spatDataframe.cpp | 167 ++++++++ terra-0.6-8/terra/src/spatDataframe.h | 23 - terra-0.6-8/terra/src/spatMessages.h | 17 terra-0.6-8/terra/src/spatOptions.cpp | 8 terra-0.6-8/terra/src/spatRaster.cpp | 158 ++++++- terra-0.6-8/terra/src/spatRaster.h | 77 ++- terra-0.6-8/terra/src/spatVector.cpp | 87 ++-- terra-0.6-8/terra/src/spatVector.h | 67 ++- terra-0.6-8/terra/src/string_utils.cpp | 35 + terra-0.6-8/terra/src/string_utils.h | 7 terra-0.6-8/terra/src/vector_methods.cpp |only terra-0.6-8/terra/src/warp.cpp | 376 ++++++++++++++++--- terra-0.6-8/terra/src/warp.h |only terra-0.6-8/terra/src/warp2.cpp |only terra-0.6-8/terra/src/write.cpp | 62 ++- terra-0.6-8/terra/src/write_gdal.cpp | 59 +- terra-0.6-8/terra/src/write_ogr.cpp | 212 +++++++++- terra-0.6-8/terra/tests/testthat/test-matrix-input.R | 4 terra-0.6-8/terra/tools/winlibs.R | 21 - 155 files changed, 2834 insertions(+), 955 deletions(-)
Title: Power Analyses for SEM
Description: Provides a-priori, post-hoc, and compromise power-analyses for structural equation models (SEM). Moshagen & Erdfelder (2016) <doi:10.1080/10705511.2014.950896>.
Author: Morten Moshagen
Maintainer: Morten Moshagen <morten.moshagen@uni-ulm.de>
Diff between semPower versions 1.0.0 dated 2018-03-27 and 1.0.1 dated 2020-05-17
DESCRIPTION | 8 - MD5 | 46 +++--- R/aPriori.R | 2 R/compromise.R | 2 R/helperFunctions.R | 2 R/plots.R | 10 + R/postHoc.R | 2 R/semPower-package.R | 31 ++-- R/validator.R | 10 - README.md | 58 +++++++- build/vignette.rds |binary inst/doc/semPower.R | 129 ++++++++++++++---- inst/doc/semPower.Rmd | 207 ++++++++++++++++++++++++----- inst/doc/semPower.pdf |binary man/getF.Rd | 10 + man/semPower.Rd | 74 ---------- man/semPower.aPriori.Rd | 13 + man/semPower.compromise.Rd | 12 + man/semPower.postHoc.Rd | 12 + man/semPower.powerPlot.byEffect.Rd | 89 ++++++------ man/semPower.powerPlot.byN.Rd | 100 +++++++------- man/validateInput.Rd | 25 ++- vignettes/semPower.Rmd | 207 ++++++++++++++++++++++++----- vignettes/semPower.html | 261 ++++++++++++++++++++++++++++++------- 24 files changed, 938 insertions(+), 372 deletions(-)
Title: IP Address Geolocation
Description: Connectors to online and offline sources for taking IP addresses
and geolocating them to country, city, timezone and other geographic ranges. For
individual connectors, see the package index.
Author: Os Keyes [aut, cre], Drew Schmidt [aut], David Robinson [ctb],
Chris Davis [ctb], Bob Rudis [ctb], Maxmind, Inc. [cph], Pascal Gloor [cph], IP2Location.com [cph]
Maintainer: Os Keyes <ironholds@gmail.com>
Diff between rgeolocate versions 1.3.0 dated 2020-05-11 and 1.3.1 dated 2020-05-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/Introduction_to_rgeolocate.html | 4 ++-- tests/testthat/test_ip_api.R | 3 +++ tests/testthat/test_ip_info.R | 2 ++ 5 files changed, 15 insertions(+), 10 deletions(-)
Title: The Hellinger Correlation
Description: Empirical value of the Hellinger correlation, a measure of dependence between
two continuous random variables. More details can be found in Geenens and Lafaye De Micheaux (2019) <arXiv:1810.10276v4>.
Author: Gery Geenens [aut],
Pierre Lafaye De Micheaux [aut, cre]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between HellCor versions 1.2 dated 2019-08-19 and 1.3 dated 2020-05-17
DESCRIPTION | 15 - MD5 | 20 - NAMESPACE | 14 - R/HellCor.R | 368 +++++++++++++++++++++++++- data/worlddemographics.RData |only inst/HISTORY | 14 - man/Chagos.Rd | 82 ++--- man/HellCor.Rd | 461 +++++++++++++++++++-------------- man/wdemographics.Rd |only man/worldemographics.Rd |only src/HellCor_init.c | 8 src/hellcor.cpp | 597 +++++++++++++++++++++++++++++++------------ src/hilbert-peano.cpp |only 13 files changed, 1152 insertions(+), 427 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <Sylvain.Jasson@inrae.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.5-13.6 dated 2020-01-24 and 0.5-14 dated 2020-05-17
ChangeLog | 18 ++ DESCRIPTION | 13 + MD5 | 26 +-- R/Stirling-n-etc.R | 1 R/biginteger.R | 84 ++++++++++-- R/bigq.R | 19 ++ R/matrix-prods.R | 16 +- R/matrixz.R | 6 TODO | 16 -- man/base-copies.Rd | 2 man/matrix.Rd | 4 src/bigvec_q.cc | 5 src/bigvec_q.h | 2 tests/gmp-test.Rout.save | 322 +++++++++++++++++++++++------------------------ 14 files changed, 304 insertions(+), 230 deletions(-)
Title: Visualizations of High-Dimensional Data
Description: Gives access to data visualisation methods that are relevant from the data scientist's point of view. The flagship idea of 'DataVisualizations' is the mirrored density plot (MD-plot) for either classified or non-classified multivariate data presented in Thrun et al. (2019) <arXiv:1908.06081>. The MD-plot outperforms the box-and-whisker diagram (box plot), violin plot and bean plot. Furthermore, a collection of various visualization methods for univariate data is provided. In the case of exploratory data analysis, 'DataVisualizations' makes it possible to inspect the distribution of each feature of a dataset visually through a combination of four methods. One of these methods is the Pareto density estimation (PDE) of the probability density function (pdf). Additionally, visualizations of the distribution of distances using PDE, the scatter-density plot using PDE for two variables as well as the Shepard density plot and the Bland-Altman plot are presented here. Pertaining to classified high-dimensional data, a number of visualizations are described, such as f.ex. the heat map and silhouette plot. A political map of the world or Germany can be visualized with the additional information defined by a classification of countries or regions. By extending the political map further, an uncomplicated function for a Choropleth map can be used which is useful for measurements across a geographic area. For categorical features, the Pie charts, slope charts and fan plots, improved by the ABC analysis, become usable. More detailed explanations are found in the book by Thrun, M.C.: "Projection-Based Clustering through Self-Organization and Swarm Intelligence" (2018) <doi:10.1007/978-3-658-20540-9>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Felix Pape [aut, rev],
Onno Hansen-Goos [ctr, ctb],
Dirk Eddelbuettel [ctr],
Craig Varrichio [ctr],
Alfred Ultsch [dtc, ctb]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DataVisualizations versions 1.1.11 dated 2020-02-13 and 1.1.12 dated 2020-05-17
DataVisualizations-1.1.11/DataVisualizations/R/addcols.R |only DataVisualizations-1.1.12/DataVisualizations/DESCRIPTION | 10 DataVisualizations-1.1.12/DataVisualizations/MD5 | 58 - DataVisualizations-1.1.12/DataVisualizations/NAMESPACE | 4 DataVisualizations-1.1.12/DataVisualizations/R/BimodalityAmplitude.R |only DataVisualizations-1.1.12/DataVisualizations/R/ClassPDEplotMaxLikeli.R | 372 ++++---- DataVisualizations-1.1.12/DataVisualizations/R/Classplot.R | 114 ++ DataVisualizations-1.1.12/DataVisualizations/R/Heatmap.R | 2 DataVisualizations-1.1.12/DataVisualizations/R/InspectDistances.R | 2 DataVisualizations-1.1.12/DataVisualizations/R/InspectVariable.R | 444 +++++----- DataVisualizations-1.1.12/DataVisualizations/R/MDplot.R | 31 DataVisualizations-1.1.12/DataVisualizations/R/MDplot4multiplevectors.R | 8 DataVisualizations-1.1.12/DataVisualizations/R/PDEplot.R | 12 DataVisualizations-1.1.12/DataVisualizations/R/ParetoDensityEstimation.R | 38 DataVisualizations-1.1.12/DataVisualizations/R/Pixelmatrix.R | 230 ++--- DataVisualizations-1.1.12/DataVisualizations/R/RcppExports.R | 4 DataVisualizations-1.1.12/DataVisualizations/R/SignedLog.R | 9 DataVisualizations-1.1.12/DataVisualizations/R/Silhouetteplot.R | 2 DataVisualizations-1.1.12/DataVisualizations/R/internpiechart.R | 363 ++++---- DataVisualizations-1.1.12/DataVisualizations/build/partial.rdb |binary DataVisualizations-1.1.12/DataVisualizations/inst/NEWS | 15 DataVisualizations-1.1.12/DataVisualizations/inst/doc/DataVisualizations.html | 183 ++-- DataVisualizations-1.1.12/DataVisualizations/man/AccountingInformation_PrimeStandard_Q3_2019.Rd | 1 DataVisualizations-1.1.12/DataVisualizations/man/BimodalityAmplitude.Rd |only DataVisualizations-1.1.12/DataVisualizations/man/Classplot.Rd | 67 + DataVisualizations-1.1.12/DataVisualizations/man/MDplot.Rd | 12 DataVisualizations-1.1.12/DataVisualizations/man/MDplot4multiplevectors.Rd | 6 DataVisualizations-1.1.12/DataVisualizations/man/Pixelmatrix.Rd | 88 - DataVisualizations-1.1.12/DataVisualizations/man/SignedLog.Rd | 4 DataVisualizations-1.1.12/DataVisualizations/src/RcppExports.cpp | 15 DataVisualizations-1.1.12/DataVisualizations/src/c_pde.cpp |only DataVisualizations-1.1.12/DataVisualizations/src/c_quantile.cpp | 8 32 files changed, 1164 insertions(+), 938 deletions(-)
More information about DataVisualizations at CRAN
Permanent link
Title: Tidying Methods for Mixed Models
Description: Convert fitted objects from various R mixed-model packages
into tidy data frames along the lines of the 'broom' package.
The package provides three
S3 generics for each model: tidy(), which summarizes a model's statistical findings such as
coefficients of a regression; augment(), which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance(), which
provides a one-row summary of model-level statistics.
Author: Ben Bolker [aut, cre] (<https://orcid.org/0000-0002-2127-0443>),
David Robinson [aut],
Dieter Menne [ctb],
Jonah Gabry [ctb],
Paul Buerkner [ctb],
Christopher Hua [ctb],
William Petry [ctb] (<https://orcid.org/0000-0002-5230-5987>),
Joshua Wiley [ctb] (<https://orcid.org/0000-0002-0271-6702>),
Patrick Kennedy [ctb],
Eduard Szöcs [ctb] (<https://orcid.org/0000-0001-5376-1194>, BASF SE),
Indrajeet Patil [ctb]
Maintainer: Ben Bolker <bolker@mcmaster.ca>
Diff between broom.mixed versions 0.2.5 dated 2020-04-19 and 0.2.6 dated 2020-05-17
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 - R/lme4_tidiers.R | 2 +- inst/NEWS.Rd | 7 ++++++- inst/doc/broom_mixed_intro.html | 6 +++--- tests/testthat/helper-checkers.R | 2 +- 7 files changed, 22 insertions(+), 18 deletions(-)
Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between arulesSequences versions 0.2-24 dated 2020-02-17 and 0.2-25 dated 2020-05-17
CHANGELOG | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/01matrix.R | 4 ++-- R/05read_write.R | 6 +++--- R/10timed.R | 4 ++-- data/zaki.rda |binary 7 files changed, 20 insertions(+), 16 deletions(-)
More information about arulesSequences at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-06 1.0.5
2019-04-02 1.0.4
2018-04-24 1.0.3
2018-04-23 1.0.2
2018-04-11 1.0.1
2017-11-17 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-03 0.6.2.1
2019-12-03 0.6.2.2
2019-10-13 0.6.1
2016-10-14 0.5.9
2015-02-18 0.5.6
2014-05-21 0.5-4
Title: Wavelet Routines for Global and Local Multiple Regression and
Correlation
Description: Wavelet routines that calculate single sets of wavelet multiple regressions and correlations,
and cross-regressions and cross-correlations from a multivariate time series.
Dynamic versions of the routines allow the wavelet local multiple (cross-)regressions and
(cross-)correlations to evolve over time.
Author: Javier Fernandez-Macho [aut, cre]
(<https://orcid.org/0000-0002-5970-4382>)
Maintainer: Javier Fernandez-Macho <javier.fernandezmacho@ehu.es>
Diff between wavemulcor versions 2.2.1 dated 2018-06-08 and 3.1.0 dated 2020-05-17
DESCRIPTION | 51 ++----- MD5 | 82 ++++++++++-- NAMESPACE | 10 + NEWS | 26 ++- R/heatmap_wave.local.multiple.correlation.R |only R/heatmap_wave.local.multiple.cross.correlation.R |only R/heatmap_wave.multiple.cross.correlation.R |only R/local.multiple.correlation.R | 53 +++++-- R/local.multiple.cross.correlation.R |only R/local.multiple.cross.regression.R |only R/local.multiple.regression.R |only R/plot_local.multiple.correlation.R |only R/plot_local.multiple.cross.correlation.R |only R/plot_local.multiple.cross.regression.R |only R/plot_local.multiple.regression.R |only R/plot_wave.local.multiple.correlation.R |only R/plot_wave.local.multiple.cross.correlation.R |only R/plot_wave.local.multiple.cross.regression.R |only R/plot_wave.local.multiple.regression.R |only R/plot_wave.multiple.correlation.R |only R/plot_wave.multiple.cross.correlation.R |only R/plot_wave.multiple.cross.regression.R |only R/plot_wave.multiple.regression.R |only R/wave.local.multiple.correlation.R | 104 ++++----------- R/wave.local.multiple.cross.correlation.R |only R/wave.local.multiple.cross.regression.R |only R/wave.local.multiple.regression.R |only R/wave.multiple.correlation.R | 25 ++- R/wave.multiple.cross.correlation.R | 128 +++++++++++-------- R/wave.multiple.cross.regression.R |only R/wave.multiple.regression.R |only build |only inst |only man/heatmap_wave.local.multiple.correlation.Rd |only man/heatmap_wave.local.multiple.cross.correlation.Rd |only man/heatmap_wave.multiple.cross.correlation.Rd |only man/local.multiple.correlation.Rd | 58 +++----- man/local.multiple.cross.correlation.Rd |only man/local.multiple.cross.regression.Rd |only man/local.multiple.regression.Rd |only man/plot_local.multiple.correlation.Rd |only man/plot_local.multiple.cross.correlation.Rd |only man/plot_local.multiple.cross.regression.Rd |only man/plot_local.multiple.regression.Rd |only man/plot_wave.local.multiple.correlation.Rd |only man/plot_wave.local.multiple.cross.correlation.Rd |only man/plot_wave.local.multiple.cross.regression.Rd |only man/plot_wave.local.multiple.regression.Rd |only man/plot_wave.multiple.correlation.Rd |only man/plot_wave.multiple.cross.correlation.Rd |only man/plot_wave.multiple.cross.regression.Rd |only man/plot_wave.multiple.regression.Rd |only man/wave.local.multiple.correlation.Rd | 60 ++++---- man/wave.local.multiple.cross.correlation.Rd |only man/wave.local.multiple.cross.regression.Rd |only man/wave.local.multiple.regression.Rd |only man/wave.multiple.correlation.Rd | 34 ++--- man/wave.multiple.cross.correlation.Rd | 98 +++++++------- man/wave.multiple.cross.regression.Rd |only man/wave.multiple.regression.Rd |only man/wavemulcor-package.Rd |only man/xrand.Rd | 7 - man/xrand1.Rd | 7 - man/xrand2.Rd | 5 vignettes |only 65 files changed, 395 insertions(+), 353 deletions(-)
Title: Extensible Style-Sheet Language Transformations
Description: An extension for the 'xml2' package to transform XML documents
by applying an 'xslt' style-sheet.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between xslt versions 1.4.1 dated 2020-04-15 and 1.4.2 dated 2020-05-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ configure | 2 +- 4 files changed, 10 insertions(+), 7 deletions(-)
Title: Truncated Multivariate Normal and Student Distributions
Description: A collection of functions to deal with the truncated univariate and multivariate normal and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
Author: Zdravko Botev [aut] (<https://orcid.org/0000-0001-9054-3452>),
Leo Belzile [aut, cre] (<https://orcid.org/0000-0002-9135-014X>)
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between TruncatedNormal versions 2.1.2 dated 2020-05-02 and 2.2 dated 2020-05-17
TruncatedNormal-2.1.2/TruncatedNormal/NEWS |only TruncatedNormal-2.2/TruncatedNormal/DESCRIPTION | 12 +-- TruncatedNormal-2.2/TruncatedNormal/MD5 | 36 ++++----- TruncatedNormal-2.2/TruncatedNormal/NAMESPACE | 1 TruncatedNormal-2.2/TruncatedNormal/NEWS.md |only TruncatedNormal-2.2/TruncatedNormal/R/TruncatedNormal-internal.R | 1 TruncatedNormal-2.2/TruncatedNormal/R/gradpsi.R | 2 TruncatedNormal-2.2/TruncatedNormal/R/mvNcdf.R | 27 ++++++ TruncatedNormal-2.2/TruncatedNormal/R/mvNqmc.R | 40 ++++++++-- TruncatedNormal-2.2/TruncatedNormal/R/mvTcdf.R | 2 TruncatedNormal-2.2/TruncatedNormal/R/mvTqmc.R | 6 - TruncatedNormal-2.2/TruncatedNormal/R/mvrandn.R | 2 TruncatedNormal-2.2/TruncatedNormal/R/mvrandt.R | 2 TruncatedNormal-2.2/TruncatedNormal/R/mvtprqmc.R | 1 TruncatedNormal-2.2/TruncatedNormal/R/tmvnorm.R | 27 +++--- TruncatedNormal-2.2/TruncatedNormal/R/tmvt.R | 27 +++--- TruncatedNormal-2.2/TruncatedNormal/inst/doc/TruncatedNormal_vignette.Rmd | 2 TruncatedNormal-2.2/TruncatedNormal/inst/doc/TruncatedNormal_vignette.html | 4 - TruncatedNormal-2.2/TruncatedNormal/tests |only TruncatedNormal-2.2/TruncatedNormal/vignettes/TruncatedNormal_vignette.Rmd | 2 20 files changed, 123 insertions(+), 71 deletions(-)
More information about TruncatedNormal at CRAN
Permanent link
Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between spray versions 1.0-8 dated 2019-10-21 and 1.0-9 dated 2020-05-17
DESCRIPTION | 9 +++-- MD5 | 33 +++++++++++---------- NAMESPACE | 3 + R/spray.R | 18 +++++++++++ README.md | 71 +++++++++++++++++++--------------------------- build/spray.pdf |only build/vignette.rds |binary inst/doc/spray.pdf |binary man/Extract.Rd | 12 +++++-- man/as.array.Rd | 2 - man/as.function.Rd | 6 +-- man/deriv.Rd | 16 +++++----- man/print.Rd | 4 -- man/spray-class.Rd |only man/spray-package.Rd | 11 ------- man/spray.Rd | 13 ++------ man/zap.Rd |only src/spray_ops.cpp | 12 +++---- tests/testthat/test_aaa.R | 5 +++ 19 files changed, 110 insertions(+), 105 deletions(-)
Title: Estimate the PVT Properties of Reservoir Fluids
Description: Generate the PVT (Pressure-Volume-Temperature) properties of dry gas, wet gas, black oil, and water samples in a tabular format at a constant temperature from the atmospheric pressure up to the pressure of interest using correlations. Spivey, J. P., McCain Jr., W. D. and North, R. (2004) <doi:10.2118/04-07-05>. Sutton, R. P. (2007) <doi:10.2118/97099-PA>. Vasquez, M., and Beggs, H. D. (1980) <doi:10.2118/6719-PA>.
Author: Farshad Tabasinejad [aut, cre]
Maintainer: Farshad Tabasinejad <farshad.tabasinejad@susaenergy.com>
Diff between Rpvt versions 0.1.0 dated 2020-05-08 and 0.1.1 dated 2020-05-17
DESCRIPTION | 8 - MD5 | 20 ++-- README.md | 9 +- build/partial.rdb |binary inst/doc/Rpvt.R | 2 inst/doc/Rpvt.Rmd | 2 inst/doc/Rpvt.html | 14 +-- src/pvt_interface.cpp | 43 +++++----- src/pvtgas.cpp | 66 ++++++++-------- src/pvtoil.cpp | 202 +++++++++++++++++++++++++------------------------- vignettes/Rpvt.Rmd | 2 11 files changed, 188 insertions(+), 180 deletions(-)
Title: Control the Number of Threads on 'BLAS'
Description: Control the number of threads on 'BLAS' (Aka 'GotoBLAS', 'OpenBLAS', 'ACML', 'BLIS' and 'MKL').
And possible to control the number of threads in 'OpenMP'.
Get a number of logical cores and physical cores if feasible.
Author: Junji NAKANO <nakanoj@ism.ac.jp> and Ei-ji Nakama <nakama@ki.rim.or.jp>
Maintainer: Ei-ji Nakama <nakama@ki.rim.or.jp>
Diff between RhpcBLASctl versions 0.20-17 dated 2020-01-17 and 0.20-137 dated 2020-05-17
ChangeLog | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/blasctl.c | 2 ++ 4 files changed, 11 insertions(+), 7 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.9.870.2.0 dated 2020-04-27 and 0.9.880.1.0 dated 2020-05-17
ChangeLog | 31 +++ DESCRIPTION | 8 MD5 | 52 ++--- build/vignette.rds |binary configure | 217 ++++++++++++++--------- configure.ac | 180 ++++++++++++------- inst/NEWS.Rd | 14 + inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/armadillo | 4 inst/include/armadillo_bits/MapMat_meat.hpp | 10 - inst/include/armadillo_bits/SpBase_meat.hpp | 2 inst/include/armadillo_bits/SpMat_bones.hpp | 2 inst/include/armadillo_bits/SpMat_meat.hpp | 6 inst/include/armadillo_bits/arma_config.hpp | 7 inst/include/armadillo_bits/arma_forward.hpp | 6 inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/auxlib_bones.hpp | 14 + inst/include/armadillo_bits/auxlib_meat.hpp | 189 ++++++++++++++++++++ inst/include/armadillo_bits/config.hpp | 12 + inst/include/armadillo_bits/config.hpp.cmake | 12 + inst/include/armadillo_bits/constants.hpp | 56 ++--- inst/include/armadillo_bits/constants_old.hpp | 78 ++++---- inst/include/armadillo_bits/debug.hpp | 1 inst/include/armadillo_bits/def_lapack.hpp | 26 ++ inst/include/armadillo_bits/fn_qr.hpp | 59 ++++++ inst/include/armadillo_bits/translate_lapack.hpp | 30 ++- 27 files changed, 757 insertions(+), 265 deletions(-)
Title: PC-Axis with R
Description: Provides a set of functions for reading and writing PC-Axis files, used by different statistical organizations around the globe for data dissemination.
Author: Carlos J. Gil Bellosta [cre, aut],
Francisco J. Viciana [aut],
Oscar Perpinan Lamigueiro [aut],
Emilio Torres Manzanera [ctb]
Maintainer: Carlos J. Gil Bellosta <cgb@datanalytics.com>
Diff between pxR versions 0.42.2 dated 2017-01-12 and 0.42.3 dated 2020-05-17
pxR-0.42.2/pxR/tests |only pxR-0.42.3/pxR/DESCRIPTION | 14 +++++++------- pxR-0.42.3/pxR/MD5 | 21 +++++++-------------- pxR-0.42.3/pxR/README.md | 10 +++++----- pxR-0.42.3/pxR/man/as.array.px.Rd | 11 +++++------ pxR-0.42.3/pxR/man/as.data.frame.px.Rd | 6 +++--- pxR-0.42.3/pxR/man/read.px.Rd | 8 ++++---- pxR-0.42.3/pxR/man/summary.Rd | 6 +++--- pxR-0.42.3/pxR/man/write.px.Rd | 30 +++++++++++++++--------------- 9 files changed, 49 insertions(+), 57 deletions(-)
Title: Streamline Physical Activity Research
Description: A collection of utilities that are useful for a broad range of
tasks that are common in physical activity research, including the
following: creation of Bland-Altman plots, formatted descriptive
statistics, metabolic calculations (e.g. basal metabolic rate predictions)
and conversions, demographic calculations (age and age-for-body-mass-index
percentile), bout analysis of moderate-to-vigorous intensity physical
activity, and analysis of bout detection algorithm performance.
Author: Paul R. Hibbing [aut, cre],
Centers for Disease Control and Prevention [ctb]
Maintainer: Paul R. Hibbing <paulhibbing@gmail.com>
Diff between PAutilities versions 0.3.1 dated 2019-12-16 and 1.0.1 dated 2020-05-17
PAutilities-0.3.1/PAutilities/tests/testthat/test_transitions.R |only PAutilities-0.3.1/PAutilities/tests/testthat/transition_info.rds |only PAutilities-0.3.1/PAutilities/tests/testthat/transition_summary.rds |only PAutilities-1.0.1/PAutilities/DESCRIPTION | 17 +-- PAutilities-1.0.1/PAutilities/MD5 | 31 +++--- PAutilities-1.0.1/PAutilities/NAMESPACE | 5 + PAutilities-1.0.1/PAutilities/NEWS.md | 23 ++++ PAutilities-1.0.1/PAutilities/R/PAutilities.R | 4 PAutilities-1.0.1/PAutilities/R/RcppExports.R |only PAutilities-1.0.1/PAutilities/R/get_matchings.R | 12 +- PAutilities-1.0.1/PAutilities/R/summary_transition.R | 48 +--------- PAutilities-1.0.1/PAutilities/R/weight_status.R |only PAutilities-1.0.1/PAutilities/inst/doc/tpm.Rmd | 2 PAutilities-1.0.1/PAutilities/inst/doc/tpm.html | 30 ++---- PAutilities-1.0.1/PAutilities/man/get_indices.Rd |only PAutilities-1.0.1/PAutilities/man/rolling_groups.Rd |only PAutilities-1.0.1/PAutilities/man/summary.transition.Rd | 7 - PAutilities-1.0.1/PAutilities/man/weight_status.Rd |only PAutilities-1.0.1/PAutilities/src |only PAutilities-1.0.1/PAutilities/vignettes/tpm.Rmd | 2 20 files changed, 85 insertions(+), 96 deletions(-)
Title: Tools for Matrix Algebra, Optimization and Inference
Description: Matrix is an universal and sometimes primary object/unit in applied mathematics and statistics. We provide a number of algorithms for selected problems in optimization and statistical inference. For general exposition to the topic with focus on statistical context, see the book by Banerjee and Roy (2014, ISBN:9781420095388).
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyoustat@gmail.com>
Diff between maotai versions 0.1.5 dated 2020-04-11 and 0.1.6 dated 2020-05-17
DESCRIPTION | 10 ++--- MD5 | 58 ++++++++++++++++-------------- NAMESPACE | 3 + NEWS.md | 80 +++++++++++++++++++----------------------- R/RcppExports.R | 4 ++ R/aux_hiddenR.R | 9 ++++ R/bmds.R | 6 ++- R/boot.mblock.R | 10 +++-- R/boot.stationary.R | 12 +++--- R/checkdist.R |only R/checkmetric.R |only R/dpmeans.R | 2 - R/ecdfdist.R | 4 +- R/ecdfdist2.R | 2 + R/epmeans.R | 4 +- R/package-maotai.R | 1 R/trio.R | 4 -- R/tsne.R | 6 ++- R/zzz.R | 5 +- README.md | 93 ++----------------------------------------------- build/partial.rdb |binary man/bmds.Rd | 4 +- man/boot.mblock.Rd | 10 +++-- man/boot.stationary.Rd | 10 +++-- man/checkdist.Rd |only man/checkmetric.Rd |only man/ecdfdist.Rd | 2 + man/ecdfdist2.Rd | 2 + man/epmeans.Rd | 2 + man/tsne.Rd | 4 +- src/RcppExports.cpp | 12 ++++++ src/cpp_casket.cpp | 23 ++++++++++++ 32 files changed, 187 insertions(+), 195 deletions(-)
Title: Sensitivity Analyses for Unmeasured Confounding or Selection
Bias in Observational Studies and Meta-Analyses
Description: Conducts sensitivity analyses for unmeasured confounding for either an observational study or a meta-analysis of observational studies. For a single observational study, the package reports E-values, defined as the minimum strength of association on the risk ratio scale that an unmeasured confounder would need to have with both the treatment and the outcome to fully explain away a specific treatment-outcome association, conditional on the measured covariates. You can use one of the evalues.XX() functions to compute E-values for the relevant outcome types. Outcome types include risk ratios, odds ratio with common or rare outcomes, hazard ratios with common or rare outcomes, and standardized differences in outcomes. Optionally, you can use the bias_plot() function to plot the bias factor as a function of two sensitivity parameters. (See VanderWeele & Ding, 2017 [<http://annals.org/aim/article/2643434>] for details.) For a meta-analysis, use the function confounded_meta to compute point estimates and inference for: (1) the proportion of studies with true causal effect sizes more extreme than a specified threshold of scientific importance; and (2) the minimum bias factor and confounding strength required to reduce to less than a specified threshold the proportion of studies with true effect sizes of scientifically significant size. The functions sens_plot() and sens_table() create plots and tables for visualizing these meta-analysis metrics across a range of bias values. (See Mathur & VanderWeele, 2019 [<https://amstat.tandfonline.com/doi/full/10.1080/01621459.2018.1529598#.XKIJtOtKjdc>] for details.) Most of the analyses available in this package can also be conducted using web-based graphical interfaces (for a single observational study: [<https://evalue.hmdc.harvard.edu>]; for a meta-analysis: [<https://mmathur.shinyapps.io/meta_gui_2/>]).
Author: Maya B. Mathur, Peng Ding, Louisa H. Smith, Tyler J. VanderWeele
Maintainer: Maya B. Mathur <mmathur@stanford.edu>
Diff between EValue versions 2.0.0 dated 2019-04-01 and 2.1.0 dated 2020-05-17
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/EValue.R | 49 +++++++++++++++++++++++++++++++++++++++++++------ man/evalues.MD.Rd | 15 +++++++++++++++ man/evalues.OLS.Rd | 18 ++++++++++++++++++ man/sens_plot.Rd | 4 ++-- man/sens_table.Rd | 4 ++-- 7 files changed, 89 insertions(+), 19 deletions(-)