Title: Utilities for Preparation of Data Analysis
Description: Miscellaneous small utilities are provided to mitigate issues with messy, inconsistent or high dimensional data and help for preprocessing and preparing analyses.
Author: Josef Frank
Maintainer: Josef Frank <josef.frank@gmx.ch>
Diff between preputils versions 1.0.2 dated 2018-12-18 and 1.0.3 dated 2020-05-18
preputils-1.0.2/preputils/build |only preputils-1.0.2/preputils/inst |only preputils-1.0.2/preputils/vignettes |only preputils-1.0.3/preputils/DESCRIPTION | 10 +++++----- preputils-1.0.3/preputils/MD5 | 13 ++++--------- preputils-1.0.3/preputils/R/rmbat.R | 16 ++++++++-------- preputils-1.0.3/preputils/R/write.space.R | 2 +- preputils-1.0.3/preputils/R/write.tab.R | 2 +- 8 files changed, 19 insertions(+), 24 deletions(-)
Title: Fast, Dependency-Free Geodesic Distance Calculations
Description: Dependency-free, ultra fast calculation of geodesic distances.
Includes the reference nanometre-accuracy geodesic distances of Karney
(2013) <doi:10.1007/s00190-012-0578-z>, as used by the 'sf' package, as well
as Haversine and Vincenty distances. Default distance measure is the "Mapbox
cheap ruler" which is generally more accurate than Haversine or Vincenty for
distances out to a few hundred kilometres, and is considerably faster. The
main function accepts one or two inputs in almost any generic rectangular
form, and returns either matrices of pairwise distances, or vectors of
sequential distances.
Author: Mark Padgham [aut, cre],
Michael D. Sumner [aut],
Charles F.F Karney [cph] (Original author of included code for geodesic
distances)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between geodist versions 0.0.3 dated 2019-04-17 and 0.0.4 dated 2020-05-18
DESCRIPTION | 8 +- MD5 | 54 +++++++++-------- NAMESPACE | 25 -------- NEWS.md | 10 ++- R/geodist-package.r | 1 R/geodist-vec.R |only R/geodist.R | 54 +++++++---------- R/georange.R | 31 ++++------ R/utils.R | 25 +++++--- build/vignette.rds |binary inst/doc/geodist.R | 22 +++---- inst/doc/geodist.Rmd | 2 inst/doc/geodist.html | 130 ++++++++++++++++++++++++------------------ man/geodist.Rd | 20 ++++-- man/geodist_benchmark.Rd | 2 man/geodist_vec.Rd |only man/georange.Rd | 4 - src/dists_paired.c | 20 +++--- src/dists_paired_vec.c |only src/dists_seq.c | 6 - src/dists_seq_vec.c |only src/dists_x.c | 18 ++--- src/dists_x_vec.c |only src/dists_xy.c | 20 +++--- src/dists_xy_vec.c |only src/geodist_init.c | 88 +++++++++++++++++++--------- src/range_seq.c | 8 +- src/range_x.c | 8 +- src/range_xy.c | 12 +-- tests/testthat/test-geodist.R | 44 +++++++++++++- vignettes/geodist.Rmd | 2 31 files changed, 355 insertions(+), 259 deletions(-)
Title: Hypothesis Tests for Functional Time Series
Description: Provides an array of white noise hypothesis tests for functional data and related visualizations.
These include tests based on the norms of autocovariance operators that are built under both strong and weak
white noise assumptions. Additionally, tests based on the spectral density operator and on principal component
dimensional reduction are included, which are built under strong white noise assumptions. These methods are
described in Kokoszka et al. (2017) <doi:10.1016/j.jmva.2017.08.004>, Characiejus and Rice (2019)
<doi:10.1016/j.ecosta.2019.01.003>, and Gabrys and Kokoszka (2007) <doi:10.1198/016214507000001111>,
respectively.
Author: Daniel Petoukhov [aut, cre]
Maintainer: Daniel Petoukhov <dvpetouk@uwaterloo.ca>
Diff between wwntests versions 1.0.0 dated 2019-06-19 and 1.0.1 dated 2020-05-18
DESCRIPTION | 8 MD5 | 34 - NEWS.md | 18 R/helper_functions.R | 29 - R/main_tests.R | 740 ++++++++++++++-------------- R/master_functions.R | 614 ++++++++++++----------- R/spectral_test_statistic.R | 210 ++++---- README.md | 282 +++++----- build/vignette.rds |binary inst/doc/wwntests_vignette.R | 96 +-- inst/doc/wwntests_vignette.html | 986 +++++++++++++++++++------------------- man/Q_WS_hyp_test.Rd | 15 man/autocorrelation_coeff_plot.Rd | 13 man/fport_test.Rd | 25 man/independence_test.Rd | 10 man/multi_lag_test.Rd | 13 man/single_lag_test.Rd | 18 man/spectral_test.Rd | 11 18 files changed, 1611 insertions(+), 1511 deletions(-)
Title: ROBustness in Network
Description: Assesses the robustness of the community structure of a network found by one or more community detection algorithm to give indications about their reliability. It detects if the community structure found by a set of algorithms is statistically significant and compares the different selected detection algorithms on the same network. robin helps to choose among different community detection algorithms the one that better fits the network of interest. Reference in Annamaria Carissimo, Luisa Cutillo, Italia De Feis (2018) <doi:10.1016/j.csda.2017.10.006>.
Author: Valeria Policastro [aut, cre],
Dario Righelli [aut],
Luisa Cutillo [aut],
Italia De Feis [aut],
Annamaria Carissimo [aut]
Maintainer: Valeria Policastro <valeria.policastro@gmail.com>
Diff between robin versions 1.0.0 dated 2020-02-17 and 1.0.1 dated 2020-05-18
DESCRIPTION | 23 ++++-- MD5 | 33 ++++----- R/ROBIN.R | 152 +++++++++++++++++++++++++----------------- README.md |only build/vignette.rds |binary inst/NEWS | 2 inst/doc/robin.R | 9 +- inst/doc/robin.Rmd | 24 +++--- inst/doc/robin.html | 175 +++++++++++++++++++++---------------------------- man/methodCommunity.Rd | 5 + man/prepGraph.Rd | 7 + man/random.Rd | 4 - man/robinAUC.Rd | 9 +- man/robinCompare.Rd | 9 +- man/robinFDATest.Rd | 9 +- man/robinGPTest.Rd | 13 ++- man/robinRobust.Rd | 14 ++- vignettes/robin.Rmd | 24 +++--- 18 files changed, 285 insertions(+), 227 deletions(-)
Title: A Metabolomics Analysis Tool for Intuitive Figures and
Convenient Metadata Collection
Description: Facilitates the creation of intuitive figures to describe metabolomics data by utilizing Kyoto Encyclopedia of Genes and Genomes (KEGG) hierarchy data, and gathers functional orthology and gene data using the package 'KEGGREST' to access the 'KEGG' API.
Author: Connor Tiffany [aut, cre]
Maintainer: Connor Tiffany <crtiffany@ucdavis.edu>
Diff between omu versions 1.0.2 dated 2018-08-02 and 1.0.4 dated 2020-05-18
omu-1.0.2/omu/R/pie_chart.R |only omu-1.0.4/omu/DESCRIPTION | 8 omu-1.0.4/omu/MD5 | 56 omu-1.0.4/omu/NAMESPACE | 12 omu-1.0.4/omu/R/Internal_Functions.R | 53 omu-1.0.4/omu/R/KEGG_gather.R | 2 omu-1.0.4/omu/R/Pie_Chart.R |only omu-1.0.4/omu/R/assign_hierarchy.R | 79 omu-1.0.4/omu/R/count_fold_changes.R | 5 omu-1.0.4/omu/R/omu_summary.R | 35 omu-1.0.4/omu/R/plot_bar.R | 2 omu-1.0.4/omu/R/plot_boxplot.R |only omu-1.0.4/omu/R/plot_heatmap.R |only omu-1.0.4/omu/R/plot_volcano.R | 2 omu-1.0.4/omu/R/ra_table.R | 2 omu-1.0.4/omu/build/vignette.rds |binary omu-1.0.4/omu/inst/CITATION | 8 omu-1.0.4/omu/inst/doc/Omu_vignette.R | 232 + omu-1.0.4/omu/inst/doc/Omu_vignette.Rmd | 748 +++-- omu-1.0.4/omu/inst/doc/Omu_vignette.html | 3222 +++++++++++++++++-------- omu-1.0.4/omu/man/c57_nos2KO_mouse_countDF.Rd | 4 omu-1.0.4/omu/man/c57_nos2KO_mouse_metadata.Rd | 4 omu-1.0.4/omu/man/count_fold_changes.Rd | 2 omu-1.0.4/omu/man/omu_anova.Rd | 12 omu-1.0.4/omu/man/omu_summary.Rd | 21 omu-1.0.4/omu/man/pie_chart.Rd | 4 omu-1.0.4/omu/man/plot_bar.Rd | 2 omu-1.0.4/omu/man/plot_boxplot.Rd |only omu-1.0.4/omu/man/plot_heatmap.Rd |only omu-1.0.4/omu/man/plot_volcano.Rd | 15 omu-1.0.4/omu/man/ra_table.Rd | 2 omu-1.0.4/omu/vignettes/Omu_vignette.Rmd | 748 +++-- 32 files changed, 3490 insertions(+), 1790 deletions(-)
Title: R6 Mathematical Sets Interface
Description: An object-oriented package for mathematical sets, upgrading the current gold-standard {sets}. Many forms of mathematical sets are implemented, including (countably finite) sets, tuples, intervals (countably infinite or uncountable), and fuzzy variants. Wrappers extend functionality by allowing symbolic representations of complex operations on sets, including unions, (cartesian) products, exponentiation, and differences (asymmetric and symmetric).
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut]
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between set6 versions 0.1.3 dated 2020-03-16 and 0.1.4 dated 2020-05-18
set6-0.1.3/set6/R/asdouble.R |only set6-0.1.3/set6/R/set6.R |only set6-0.1.4/set6/DESCRIPTION | 28 - set6-0.1.4/set6/MD5 | 143 ++++---- set6-0.1.4/set6/NAMESPACE | 7 set6-0.1.4/set6/NEWS.md | 11 set6-0.1.4/set6/R/RcppExports.R |only set6-0.1.4/set6/R/Set.R | 178 +++++----- set6-0.1.4/set6/R/SetWrapper.R | 4 set6-0.1.4/set6/R/SetWrapper_ComplementSet.R | 2 set6-0.1.4/set6/R/SetWrapper_ProductSet.R | 6 set6-0.1.4/set6/R/Set_ConditionalSet.R | 49 +- set6-0.1.4/set6/R/Set_FuzzySet_FuzzyTuple.R | 2 set6-0.1.4/set6/R/Set_Interval.R | 96 +---- set6-0.1.4/set6/R/Set_Interval_SpecialSet.R | 66 +-- set6-0.1.4/set6/R/Set_UniversalSet.R | 24 - set6-0.1.4/set6/R/asFuzzySet.R | 4 set6-0.1.4/set6/R/asSet.R | 21 - set6-0.1.4/set6/R/assertions.R | 2 set6-0.1.4/set6/R/atomic_coercions.R |only set6-0.1.4/set6/R/helpers.R | 11 set6-0.1.4/set6/R/operation_cleaner.R | 4 set6-0.1.4/set6/R/operation_setcomplement.R | 39 +- set6-0.1.4/set6/R/operation_setintersect.R | 12 set6-0.1.4/set6/R/operation_setproduct.R | 11 set6-0.1.4/set6/R/set6-package.R |only set6-0.1.4/set6/R/zzz.R | 2 set6-0.1.4/set6/README.md | 29 - set6-0.1.4/set6/build/vignette.rds |binary set6-0.1.4/set6/inst/doc/set6.R | 10 set6-0.1.4/set6/inst/doc/set6.html | 26 - set6-0.1.4/set6/inst/doc/set6.rmd | 16 set6-0.1.4/set6/man/ComplementSet.Rd | 4 set6-0.1.4/set6/man/Complex.Rd | 3 set6-0.1.4/set6/man/ConditionalSet.Rd | 41 ++ set6-0.1.4/set6/man/ExponentSet.Rd | 4 set6-0.1.4/set6/man/ExtendedReals.Rd | 2 set6-0.1.4/set6/man/FuzzySet.Rd | 10 set6-0.1.4/set6/man/FuzzyTuple.Rd | 4 set6-0.1.4/set6/man/Integers.Rd | 2 set6-0.1.4/set6/man/Interval.Rd | 9 set6-0.1.4/set6/man/Naturals.Rd | 2 set6-0.1.4/set6/man/NegIntegers.Rd | 2 set6-0.1.4/set6/man/NegRationals.Rd | 2 set6-0.1.4/set6/man/NegReals.Rd | 2 set6-0.1.4/set6/man/PosIntegers.Rd | 2 set6-0.1.4/set6/man/PosNaturals.Rd | 2 set6-0.1.4/set6/man/PosRationals.Rd | 2 set6-0.1.4/set6/man/PosReals.Rd | 2 set6-0.1.4/set6/man/PowersetSet.Rd | 5 set6-0.1.4/set6/man/ProductSet.Rd | 4 set6-0.1.4/set6/man/Properties.Rd | 4 set6-0.1.4/set6/man/Rationals.Rd | 2 set6-0.1.4/set6/man/Reals.Rd | 2 set6-0.1.4/set6/man/Set.Rd | 14 set6-0.1.4/set6/man/SetWrapper.Rd | 4 set6-0.1.4/set6/man/SpecialSet.Rd | 3 set6-0.1.4/set6/man/Tuple.Rd | 3 set6-0.1.4/set6/man/UnionSet.Rd | 4 set6-0.1.4/set6/man/UniversalSet.Rd | 6 set6-0.1.4/set6/man/as.Set.Rd | 9 set6-0.1.4/set6/man/set6-package.Rd | 10 set6-0.1.4/set6/src |only set6-0.1.4/set6/tests/testthat/test_misc_helpers.R | 13 set6-0.1.4/set6/tests/testthat/test_operations_setcomplement.R | 36 +- set6-0.1.4/set6/tests/testthat/test_operations_setintersect.R | 13 set6-0.1.4/set6/tests/testthat/test_operations_setproduct.R | 4 set6-0.1.4/set6/tests/testthat/test_operations_setunion.R | 2 set6-0.1.4/set6/tests/testthat/test_set.R | 11 set6-0.1.4/set6/tests/testthat/test_set_fuzzyset.R | 2 set6-0.1.4/set6/tests/testthat/test_set_fuzzyset_fuzzytuple.R | 4 set6-0.1.4/set6/tests/testthat/test_set_tuple.R | 10 set6-0.1.4/set6/tests/testthat/test_setwrapper_complementset.R | 11 set6-0.1.4/set6/tests/testthat/test_setwrapper_unionset.R | 15 set6-0.1.4/set6/vignettes/set6.rmd | 16 75 files changed, 626 insertions(+), 479 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see support list of insight; Lüdecke,
Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), this package
implements features like bootstrapping or simulating of parameters and
models, feature reduction (feature extraction and variable selection)
as well as functions to describe data and variable characteristics
(e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>),
Søren Højsgaard [aut],
Zen J. Lau [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between parameters versions 0.6.1 dated 2020-04-08 and 0.7.0 dated 2020-05-18
DESCRIPTION | 22 - MD5 | 173 ++++----- NAMESPACE | 29 + NEWS.md | 50 ++ R/bootstrap_model.R | 4 R/bootstrap_parameters.R | 2 R/check_heterogeneity.R |only R/check_multimodal.R | 46 +- R/ci.R | 50 +- R/ci_wald.R | 2 R/cluster_analysis.R | 1 R/cluster_discrimination.R | 2 R/convert_efa_to_cfa.R | 1 R/demean.R | 47 +- R/describe_distribution.R | 142 ++++++- R/dof.R | 32 + R/equivalence_test.R | 526 +++++++++++++++++++++++++--- R/extract_parameters.R | 87 +++- R/format_parameters.R | 9 R/model_parameters.aov.R | 24 - R/model_parameters.bayesian.R | 94 ++--- R/model_parameters.gam.R | 5 R/model_parameters.lavaan.R | 12 R/model_parameters.rma.R | 4 R/model_parameters_default.R | 41 +- R/model_parameters_mixed.R | 53 +- R/n_factors.R | 1 R/n_parameters.R | 7 R/p_value.R | 47 ++ R/parameters_table.R | 38 +- R/plot.R | 2 R/print.parameters_model.R | 59 ++- R/reshape_loadings.R | 1 R/robust_estimation.R | 7 R/se_betwithin.R | 5 R/se_ml1.R | 5 R/se_satterthwaite.R | 1 R/simulate_model.R | 43 +- R/skewness_kurtosis.R | 2 R/standard_error.R | 36 + R/utils.R | 37 + R/utils_cleaners.R | 21 - R/utils_model_parameters.R | 52 +- R/utils_pca_efa.R | 8 README.md | 14 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 9 inst/doc/demean.R | 100 +++++ inst/doc/demean.Rmd | 168 ++++++++ inst/doc/demean.html | 394 +++++++++++++------- inst/doc/efa_cfa.html | 80 ++-- inst/doc/model_parameters.R | 41 ++ inst/doc/model_parameters.Rmd | 65 ++- inst/doc/model_parameters.html | 332 ++++++++++------- inst/doc/model_parameters_robust.html | 150 +++---- inst/doc/model_parameters_standardized.html | 74 +-- inst/doc/parameters_reduction.html | 46 +- inst/doc/parameters_selection.html | 32 - man/check_multimodal.Rd | 42 +- man/ci.merMod.Rd | 6 man/demean.Rd | 30 + man/describe_distribution.Rd | 15 man/dot-factor_to_numeric.Rd | 2 man/equivalence_test.lm.Rd | 188 ++++++++-- man/model_parameters.aov.Rd | 3 man/model_parameters.lavaan.Rd | 3 man/model_parameters.merMod.Rd | 11 man/model_parameters.rma.Rd | 4 man/model_parameters.stanreg.Rd | 11 man/p_value.Rd | 9 man/p_value_wald.Rd | 4 man/parameters_table.Rd | 17 man/print.Rd | 24 + man/standard_error.Rd | 5 man/standard_error_robust.Rd | 4 tests/testthat/test-equivalence_test.R | 2 tests/testthat/test-gam.R | 24 - tests/testthat/test-glmer.R | 8 tests/testthat/test-lme.R | 118 +++--- tests/testthat/test-model_parameters.aov.R | 2 tests/testthat/test-model_parameters.gam.R |only tests/testthat/test-model_parameters.glm.R | 4 tests/testthat/test-model_parameters.lme.R | 31 - tests/testthat/test-model_parameters_std.R | 49 +- tests/testthat/test-se_ml1R.R |only vignettes/bibliography.bib | 7 vignettes/demean.Rmd | 168 ++++++++ vignettes/model_parameters.Rmd | 65 ++- 89 files changed, 3069 insertions(+), 1122 deletions(-)
Title: Multiverse Analysis of Multinomial Processing Tree Models
Description: Statistical or cognitive modeling usually requires a number of more or less
arbitrary choices creating one specific path through a 'garden of forking paths'.
The multiverse approach (Steegen, Tuerlinckx, Gelman, & Vanpaemel, 2016,
<doi:10.1177/1745691616658637>) offers a principled alternative in which results
for all possible combinations of reasonable modeling choices are reported.
MPTmultiverse performs a multiverse analysis for multinomial processing tree
(MPT, Riefer & Batchelder, 1988, <doi:10.1037/0033-295X.95.3.318>) models combining
maximum-likelihood/frequentist and Bayesian estimation approaches with
different levels of pooling (i.e., data aggregation). For the
frequentist approaches, no pooling (with and without parametric or nonparametric
bootstrap) and complete pooling are implemented using
MPTinR <https://cran.r-project.org/package=MPTinR>.
For the Bayesian approaches, no pooling, complete pooling, and three different
variants of partial pooling are implemented using
TreeBUGS <https://cran.r-project.org/package=TreeBUGS>. The main function is
fit_mpt() who performs the multiverse analysis in one call.
Author: Henrik Singmann [aut, cre] (<https://orcid.org/0000-0002-4842-3657>),
Daniel W. Heck [aut],
Marius Barth [aut] (<https://orcid.org/0000-0002-3421-6665>),
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>)
Maintainer: Henrik Singmann <singmann@gmail.com>
Diff between MPTmultiverse versions 0.4-0 dated 2020-03-27 and 0.4-1 dated 2020-05-18
DESCRIPTION | 6 MD5 | 10 - NEWS.md | 5 build/vignette.rds |binary inst/doc/introduction-bayen_kuhlmann_2011.html | 4 tests/testthat/test-mptinr.R | 203 ++++++++++++++++++------- 6 files changed, 167 insertions(+), 61 deletions(-)
Title: Protein Quantification in Mass Spectrometry-Based Proteomics
Description: An implementation of the maximal
peptide ratio extraction module of the MaxLFQ algorithm by
Cox et al. (2014) <doi:10.1074/mcp.M113.031591> in a complete
pipeline for processing proteomics data in data-independent acquisition mode
(Pham et al. 2020 <doi:10.1093/bioinformatics/btz961>).
It offers additional options for protein quantification using the N most intense
fragment ions, using all
fragment ions, and a wrapper for the median polish algorithm by Tukey (1977, ISBN:0201076160).
Author: Thang Pham [aut, cre, cph, ctb]
(<https://orcid.org/0000-0003-0333-2492>),
Alex Henneman [ctb] (<https://orcid.org/0000-0002-3746-4410>)
Maintainer: Thang Pham <t.pham@amsterdamumc.nl>
Diff between iq versions 1.4 dated 2020-04-26 and 1.5 dated 2020-05-18
DESCRIPTION | 8 - MD5 | 323 ++++++++++++++++++++++++++++++++++++++++++++++++- NAMESPACE | 1 R/iq-fast.R |only R/iq.R | 17 ++ build/vignette.rds |binary inst/doc/iq-fast.R |only inst/doc/iq-fast.Rmd |only inst/doc/iq-fast.html |only inst/doc/iq.html | 4 man/fast_MaxLFQ.Rd |only man/fast_preprocess.Rd |only man/fast_read.Rd |only man/preprocess.Rd | 2 src |only vignettes/iq-fast.Rmd |only 16 files changed, 340 insertions(+), 15 deletions(-)
Title: Versatile Curation of Table Metadata
Description: The 'yamlet' package implements a file-based
mechanism for documenting datasets. It reads and writes
YAML-formatted metadata and applies it as data
item attributes. Data and metadata are stored independently
but can be coordinated by using similar file paths with
different extensions. The 'yamlet' dialect is valid 'YAML',
but some conventions are chosen to improve readability.
Defaults and conventions can be over-ridden by the user.
See ?yamlet and ?decorate.data.frame.
See ?read_yamlet ?write_yamlet, and ?io_csv.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.4.6 dated 2020-03-14 and 0.4.7 dated 2020-05-18
DESCRIPTION | 8 - MD5 | 216 +++++++++++++++++------------------ R/append_units.R | 2 R/xtable.R | 14 +- R/yamlet.R | 16 +- inst/doc/yamlet-introduction.html | 4 man/alias.data.frame.Rd | 8 - man/anti_join.decorated.Rd | 31 ++--- man/append_units.Rd | 9 - man/append_units.data.frame.Rd | 10 - man/append_units.default.Rd | 18 +- man/arrange.decorated.Rd | 33 ++--- man/as.character.yam.Rd | 6 man/as.character.yamlet.Rd | 9 - man/as_classified.Rd | 5 man/as_classified.factor.Rd | 36 +++-- man/as_decorated.Rd | 29 ++-- man/as_spork.symbolic_units.Rd | 5 man/as_spork.unit_string.Rd | 5 man/as_spork.units.Rd | 5 man/as_unit_string.Rd | 13 +- man/as_unit_string.character.Rd | 13 +- man/as_unit_string.factor.Rd | 13 +- man/as_unit_string.symbolic_units.Rd | 13 +- man/as_unit_string.units.Rd | 13 +- man/as_yam.Rd | 7 - man/as_yam.character.Rd | 8 - man/as_yam.yamlet.Rd | 14 +- man/as_yamlet.Rd | 6 man/as_yamlet.character.Rd | 16 +- man/as_yamlet.data.frame.Rd | 7 - man/as_yamlet.yam.Rd | 14 +- man/as_yamlet.yamlet.Rd | 7 - man/conditionalize.Rd | 3 man/conditionalize.data.frame.Rd | 34 ++--- man/decorate.Rd | 12 + man/decorate.character.Rd | 52 ++++---- man/decorate.data.frame.Rd | 42 +++--- man/decorate.list.Rd | 20 ++- man/decorations.Rd | 12 + man/decorations.data.frame.Rd | 18 +- man/encode.yamlet.Rd | 3 man/explicit_guide.Rd | 5 man/explicit_guide.data.frame.Rd | 5 man/explicit_guide.yamlet.Rd | 5 man/factorize_codelist.Rd | 9 - man/factorize_codelist.character.Rd | 9 - man/factorize_codelist.data.frame.Rd | 9 - man/factorize_codelist.default.Rd | 9 - man/factorize_codelist.factor.Rd | 9 - man/filter.decorated.Rd | 31 ++--- man/footnote.Rd | 5 man/footnote.decorated.Rd | 9 + man/full_join.decorated.Rd | 34 ++--- man/ggplot.decorated.Rd | 34 ++--- man/ggready.Rd | 6 man/ggready.data.frame.Rd | 40 +++--- man/group_by.decorated.Rd | 34 ++--- man/inner_join.decorated.Rd | 34 ++--- man/io_csv.Rd | 18 +- man/io_csv.character.Rd | 51 ++++---- man/io_csv.data.frame.Rd | 62 +++++----- man/io_table.Rd | 17 +- man/io_table.character.Rd | 51 ++++---- man/io_table.data.frame.Rd | 61 +++++---- man/io_yamlet.Rd | 18 +- man/io_yamlet.character.Rd | 56 +++++---- man/io_yamlet.data.frame.Rd | 62 +++++----- man/io_yamlet.yamlet.Rd | 30 +++- man/isConditional.Rd | 5 man/isConditional.default.Rd | 5 man/isConditional.list.Rd | 5 man/isLevels.Rd | 5 man/isLevels.character.Rd | 5 man/isLevels.default.Rd | 5 man/is_parseable.Rd | 3 man/is_parseable.default.Rd | 36 +++-- man/left_join.decorated.Rd | 34 ++--- man/list2encoding.Rd | 3 man/mutate.decorated.Rd | 33 ++--- man/print.dg.Rd | 3 man/print.yamlet.Rd | 8 - man/read_yamlet.Rd | 38 +++--- man/redecorate.Rd | 12 + man/resolve.Rd | 6 man/resolve.data.frame.Rd | 36 +++-- man/right_join.decorated.Rd | 34 ++--- man/select.decorated.Rd | 31 ++--- man/semi_join.decorated.Rd | 31 ++--- man/slice.decorated.Rd | 29 ++-- man/sub-.classified.Rd | 5 man/sub-.unit_string.Rd | 13 +- man/sub-.yamlet.Rd | 7 - man/sub-sub-.unit_string.Rd | 13 +- man/sub_units.Rd | 23 ++- man/summarise.decorated.Rd | 31 ++--- man/summarize.decorated.Rd | 31 ++--- man/to_yamlet.NULL.Rd | 10 - man/to_yamlet.Rd | 9 - man/to_yamlet.character.Rd | 8 - man/to_yamlet.default.Rd | 8 - man/to_yamlet.list.Rd | 8 - man/unnest.Rd | 5 man/unnest.default.Rd | 5 man/unnest.list.Rd | 5 man/write_yamlet.Rd | 43 ++++-- man/xtable.decorated.Rd | 2 man/yamlet.Rd | 1 tests/testthat/test-yamlet.R | 56 +++++++++ 109 files changed, 1226 insertions(+), 946 deletions(-)
Title: Statistical Process Control -- Calculation of ARL and Other
Control Chart Performance Measures
Description: Evaluation of control charts by means of
the zero-state, steady-state ARL (Average Run Length) and RL quantiles.
Setting up control charts for given in-control ARL. The control charts
under consideration are one- and two-sided EWMA, CUSUM, and
Shiryaev-Roberts schemes for monitoring the mean or variance of normally
distributed independent data. ARL calculation of the same set of schemes under drift (in the mean) are added.
Eventually, all ARL measures for the multivariate EWMA (MEWMA) are provided.
Author: Sven Knoth
Maintainer: Sven Knoth <Sven.Knoth@gmx.de>
Diff between spc versions 0.6.3 dated 2019-10-27 and 0.6.4 dated 2020-05-18
DESCRIPTION | 8 MD5 | 27 +- NAMESPACE | 2 R/pois.cusum.crit.L0L1.R | 11 - R/pois.ewma.ad.R |only R/pois.ewma.arl.R | 2 man/pois.ewma.ad.Rd |only man/pois.ewma.arl.Rd | 25 ++ man/pois.ewma.crit.Rd | 12 + src/allspc.c | 472 +++++++++++++++++++++++++++++++++++++++++----- src/ccusum_crit_be.c | 3 src/cewma_ad_be.c |only src/cewma_arl_be.c | 8 src/cewma_crit_be.c | 1 src/sewma_q_crit_prerun.c | 4 src/spc_init.c | 2 16 files changed, 497 insertions(+), 80 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
When working with 'PowerPoint' presentations, slides can be added or removed; shapes inside
slides can also be added or removed. When working with 'Word' documents, a cursor can be
used to help insert or delete content at a specific location in the document. The package
does not require any installation of Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] (function body_replace_all_text),
Liz Sander [ctb] (several documentation fixes),
Anton Victorson [ctb] (fixes xml structures),
Jon Calder [ctb] (update vignettes),
John Harrold [ctb] (fuction annotate_base),
John Muschelli [ctb] (google doc compatibility)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.3.10 dated 2020-05-14 and 0.3.11 dated 2020-05-18
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/knitr_utils.R | 15 +++++++++++---- R/ooxml_block_objects.R | 1 + man/prop_table.Rd | 1 + 5 files changed, 20 insertions(+), 11 deletions(-)
Title: Global Sensitivity Analysis of Model Outputs
Description: A collection of functions for factor screening, global sensitivity analysis and robustness analysis. Most of the functions have to be applied on model with scalar output, but several functions support multi-dimensional outputs.
Author: Bertrand Iooss, Sebastien Da Veiga, Alexandre Janon and Gilles Pujol, with contributions from Baptiste Broto, Khalid Boumhaout, Thibault Delage, Reda El Amri, Jana Fruth, Laurent Gilquin, Joseph Guillaume, Loic Le Gratiet, Paul Lemaitre, Amandine Marrel, Anouar Meynaoui, Barry L. Nelson, Filippo Monari, Roelof Oomen, Oldrich Rakovec, Bernardo Ramos, Olivier Roustant, Eunhye Song, Jeremy Staum, Roman Sueur, Taieb Touati, Frank Weber
Maintainer: Bertrand Iooss <biooss@yahoo.fr>
Diff between sensitivity versions 1.19.0 dated 2020-04-29 and 1.20.0 dated 2020-05-18
sensitivity-1.19.0/sensitivity/src/registerDynamicSymbol.cpp |only sensitivity-1.20.0/sensitivity/DESCRIPTION | 13 sensitivity-1.20.0/sensitivity/MD5 | 46 - sensitivity-1.20.0/sensitivity/NAMESPACE | 22 sensitivity-1.20.0/sensitivity/NEWS | 16 sensitivity-1.20.0/sensitivity/R/RcppExports.R |only sensitivity-1.20.0/sensitivity/R/addelman_kempthorne.R |only sensitivity-1.20.0/sensitivity/R/discrepancyCriteria_cplus.R |only sensitivity-1.20.0/sensitivity/R/maximin_cplus.R |only sensitivity-1.20.0/sensitivity/R/shapleyLinearGaussian.R |only sensitivity-1.20.0/sensitivity/R/shapleySubsetMc.R | 6 sensitivity-1.20.0/sensitivity/R/sobolEff.R | 392 +++++----- sensitivity-1.20.0/sensitivity/R/sobolrank.R | 16 sensitivity-1.20.0/sensitivity/R/sobolrec.R |only sensitivity-1.20.0/sensitivity/R/sobolrep.R |only sensitivity-1.20.0/sensitivity/R/sysdata.rda |only sensitivity-1.20.0/sensitivity/man/addelman_const.Rd |only sensitivity-1.20.0/sensitivity/man/discrepancyCriteria_cplus.Rd |only sensitivity-1.20.0/sensitivity/man/maximin_cplus.Rd |only sensitivity-1.20.0/sensitivity/man/sensitivity-package.Rd | 16 sensitivity-1.20.0/sensitivity/man/shapleyLinearGaussian.Rd |only sensitivity-1.20.0/sensitivity/man/sobolrank.Rd | 21 sensitivity-1.20.0/sensitivity/man/sobolrec.Rd |only sensitivity-1.20.0/sensitivity/man/sobolrep.Rd |only sensitivity-1.20.0/sensitivity/man/sobolroalhs.Rd | 2 sensitivity-1.20.0/sensitivity/man/sobolroauc.Rd | 2 sensitivity-1.20.0/sensitivity/src/DisC2_criteria.cpp |only sensitivity-1.20.0/sensitivity/src/DisL2_criteria.cpp |only sensitivity-1.20.0/sensitivity/src/DisL2star_criteria.cpp |only sensitivity-1.20.0/sensitivity/src/DisM2_criteria.cpp |only sensitivity-1.20.0/sensitivity/src/DisS2_criteria.cpp |only sensitivity-1.20.0/sensitivity/src/DisW2_criteria.cpp |only sensitivity-1.20.0/sensitivity/src/LG_estimatornew.cpp |only sensitivity-1.20.0/sensitivity/src/RcppExports.cpp |only sensitivity-1.20.0/sensitivity/src/compar_array.cpp |only sensitivity-1.20.0/sensitivity/src/maximin_cplus.cpp |only sensitivity-1.20.0/sensitivity/src/nested.cpp |only 37 files changed, 316 insertions(+), 236 deletions(-)
Title: Generalized Graded Unfolding Model
Description: An implementation of the generalized graded unfolding model (GGUM) in R, see Roberts, Donoghue, and Laughlin (2000) <doi:10.1177/01466216000241001>). It allows to simulate data sets based on the GGUM. It fits the GGUM and the GUM, and it retrieves item and person parameter estimates. Several plotting functions are available (item and test information functions; item and test characteristic curves; item category response curves). Additionally, there are some functions that facilitate the communication between R and 'GGUM2004'. Finally, a model-fit checking utility, MODFIT(), is also available.
Author: Jorge N. Tendeiro [aut, cre],
Sebastian Castro-Alvarez [aut]
Maintainer: Jorge N. Tendeiro <j.n.tendeiro@rug.nl>
Diff between GGUM versions 0.4 dated 2020-01-21 and 0.4-1 dated 2020-05-18
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/GUM.R | 9 +++++++-- R/pkgname.R | 5 ++++- build/partial.rdb |binary man/GGUM-package.Rd | 5 ++++- 6 files changed, 24 insertions(+), 13 deletions(-)
Title: Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA
System
Description: Reads annual financial reports including assets, liabilities, dividends history, stockholder composition and much more from Bovespa's DFP, FRE and FCA systems <http://www.bmfbovespa.com.br/en_us/products/listed-equities-and-derivatives/equities/listed-companies.htm>.
These are web based interfaces for all financial reports of companies traded at Bovespa. The package is specially designed for large scale data importation, keeping a tabular (long) structure for easier processing.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetDFPData versions 1.5.2 dated 2019-07-22 and 1.5.3 dated 2020-05-18
DESCRIPTION | 10 +-- MD5 | 34 ++++++------ NEWS.md | 4 + R/gdfpd_GetDFPData.R | 6 +- R/gdfpd_utils.R | 10 ++- build/vignette.rds |binary inst/doc/gdfpd-vignette-introduction.R | 16 ++--- inst/doc/gdfpd-vignette-introduction.html | 81 ++++++++++++++---------------- man/gdfpd.GetDFPData.Rd | 18 ++++-- man/gdfpd.export.DFP.data.Rd | 6 +- man/gdfpd.fix.DFP.dataframes.Rd | 3 - man/gdfpd.get.info.companies.Rd | 6 +- man/gdfpd.read.dfp.zip.file.Rd | 3 - man/gdfpd.read.dfp.zip.file.type.1.Rd | 3 - man/gdfpd.read.dfp.zip.file.type.2.Rd | 3 - man/gdfpd.read.zip.file.type.fca.Rd | 3 - man/gdfpd.read.zip.file.type.fre.Rd | 3 - man/my.copy.fct.Rd | 9 ++- 18 files changed, 116 insertions(+), 102 deletions(-)
Title: Calculates Demographic Indicators
Description: Calculates key indicators such as fertility rates (Total Fertility Rate (TFR), General Fertility Rate (GFR),
and Age Specific Fertility Rate (ASFR)) using Demographic and Health Survey (DHS) women/individual data,
and childhood mortality probabilities and rates such as Neonatal Mortality Rate (NNMR), Post-neonatal Mortality Rate (PNNMR),
Infant Mortality Rate (IMR), Child Mortality Rate (CMR), and Under-five Mortality Rate (U5MR).
In addition to the indicators, the 'DHS.rates' package estimates sampling errors indicators such as Standard Error (SE),
Design Effect (DEFT), Relative Standard Error (RSE) and Confidence Interval (CI).
The package is developed according to the DHS methodology of calculating the fertility indicators and
the childhood mortality rates outlined in the
"Guide to DHS Statistics" (Croft, Trevor N., Aileen M. J. Marshall, Courtney K. Allen, et al. 2018, <https://dhsprogram.com/Data/Guide-to-DHS-Statistics/index.cfm>)
and the DHS methodology of estimating the sampling errors indicators outlined in
the "DHS Sampling and Household Listing Manual" (ICF International 2012, <https://dhsprogram.com/pubs/pdf/DHSM4/DHS6_Sampling_Manual_Sept2012_DHSM4.pdf>).
Author: Mahmoud Elkasabi
Maintainer: Mahmoud Elkasabi <mahmoud.elkasabi@icf.com>
Diff between DHS.rates versions 0.7.0 dated 2019-04-05 and 0.7.1 dated 2020-05-18
DESCRIPTION | 10 - MD5 | 34 +-- R/ASFR.R | 6 R/DataPrepare.R | 3 R/GFR.R | 8 R/TFR.R | 68 ++++--- R/chmort.R | 428 ++++++++++++++++++++++++------------------------ R/chmortp.R | 2 build/vignette.rds |binary data/ADBR70.rda |binary inst/doc/DHS.rates.R | 28 +-- inst/doc/DHS.rates.html | 372 +++++++++++++++++++++++++++++++++-------- man/ADBR70.Rd | 6 man/AWIR70.Rd | 6 man/EMIR70.Rd | 6 man/chmort.Rd | 18 +- man/chmortp.Rd | 13 + man/fert.Rd | 20 +- 18 files changed, 657 insertions(+), 371 deletions(-)
Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: Provides functions for querying, retrieving and analysing
protocol- and results-related information on clinical trials from
two public registers, the European Union Clinical Trials Register
(EUCTR, <https://www.clinicaltrialsregister.eu/>) and
ClinicalTrials.gov (CTGOV, <https://clinicaltrials.gov/>). The
information is transformed and then stored in a database (nodbi).
Functions are provided for accessing and analysing the locally
stored information on the clinical trials, as well as for
identifying duplicate records. The package is motivated by the need
for aggregating and trend-analysing the design, conduct and outcomes
across clinical trials.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>)
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.2 dated 2019-12-08 and 1.2.1 dated 2020-05-18
DESCRIPTION | 12 - MD5 | 58 ++++---- NEWS.md | 7 - R/main.R | 14 +- R/utils.R | 31 ++-- README.md | 132 +++++++++----------- build/vignette.rds |binary inst/doc/ctrdata_get_started.pdf |binary inst/doc/ctrdata_usage_examples.pdf |binary inst/image/README-ctrdata_results_neuroblastoma.png |binary inst/tinytest/ctrdata_ctgov.R | 39 +---- inst/tinytest/ctrdata_euctr.R | 101 +++++---------- inst/tinytest/setup_ctrdata.R | 2 inst/tinytest/test_ctrdata_ctrfindactivesubstance.R | 8 - inst/tinytest/test_ctrdata_mongo_local_ctgov.R | 9 - inst/tinytest/test_ctrdata_mongo_local_euctr.R | 8 - inst/tinytest/test_ctrdata_mongo_remote_ro.R | 7 - inst/tinytest/test_ctrdata_mongo_remote_rw_ctgov.R | 8 - inst/tinytest/test_ctrdata_mongo_remote_rw_euctr.R | 8 - inst/tinytest/test_ctrdata_other_functions.R | 54 +++----- inst/tinytest/test_ctrdata_sqlite_ctgov.R | 8 - inst/tinytest/test_ctrdata_sqlite_euctr.R | 8 - man/ctrGetQueryUrlFromBrowser.Rd | 3 man/ctrLoadQueryIntoDb.Rd | 14 +- man/dbFindFields.Rd | 5 man/dbFindIdsUniqueTrials.Rd | 3 man/dbGetFieldsIntoDf.Rd | 4 man/dfListExtractKey.Rd | 16 -- tests/tinytest.R | 4 vignettes/ctrdata_usage_examples.Rmd | 10 - 30 files changed, 263 insertions(+), 310 deletions(-)
Title: Longitudinal Concordance Correlation
Description: Estimates the longitudinal concordance correlation to access the longitudinal agreement profile. The estimation approach implemented is variance components approach based on polynomial mixed effects regression model, as proposed by Oliveira, Hinde and Zocchi (2018) <doi:10.1007/s13253-018-0321-1>. In addition, non-parametric confidence intervals were implemented using percentile method or normal-approximation based on Fisher Z-transformation.
Author: Thiago de Paula Oliveira [aut, cre],
Rafael de Andrade Moral [aut],
Silvio Sandoval Zocchi [ctb],
Clarice Garcia Borges Demetrio [ctb],
John Hinde [aut]
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@usp.br>
Diff between lcc versions 1.0.4 dated 2020-02-13 and 1.0.5 dated 2020-05-18
lcc-1.0.4/lcc/README.md |only lcc-1.0.5/lcc/DESCRIPTION | 10 +- lcc-1.0.5/lcc/MD5 | 17 ++-- lcc-1.0.5/lcc/NAMESPACE | 3 lcc-1.0.5/lcc/R/ciBuilder.R | 6 + lcc-1.0.5/lcc/R/init.R | 6 + lcc-1.0.5/lcc/R/lcc.R | 35 +++++++-- lcc-1.0.5/lcc/R/lccBootstrap.R | 150 ++++++++++++++++++++++++++++++----------- lcc-1.0.5/lcc/R/lcc_internal.R | 6 - lcc-1.0.5/lcc/man/lcc.Rd | 27 ++++++- 10 files changed, 192 insertions(+), 68 deletions(-)
More information about leaflet.extras2 at CRAN
Permanent link
Title: Learn Group Bayesian Networks using Hierarchical Clustering
Description: Learn group Bayesian Networks using hierarchical Clustering. This package implements the inference of group Bayesian networks based on hierarchical Clustering, and the adaptive refinement of the grouping regarding an outcome of interest.
Author: "Ann-Kristin Becker"
Maintainer: "Ann-Kristin Becker" <annkristinbecker@web.de>
Diff between GroupBN versions 0.1.0 dated 2020-05-01 and 0.2.0 dated 2020-05-18
DESCRIPTION | 14 +- MD5 | 18 +- NAMESPACE | 5 NEWS.md |only R/Refinement_final.R | 100 +++++++++------- R/adaptive_refinement_help.R | 261 ++++++++++++++++++++++++++++++++++++++---- data/wine.groupbn.refined.rda |binary man/groupbn.Rd | 3 man/groupbn.vis.html.plot.Rd | 3 man/groupbn_refinement.Rd | 6 man/predict.groupbn.Rd |only 11 files changed, 327 insertions(+), 83 deletions(-)
Title: Univariate Outlier Detection
Description: Detect outliers in one-dimensional data.
Author: Mark van der Loo <mark.vanderloo@gmail.com>
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between extremevalues versions 2.3.2 dated 2016-01-20 and 2.3.3 dated 2020-05-18
extremevalues-2.3.2/extremevalues/inst/doc/extremevalues21.pdf |only extremevalues-2.3.3/extremevalues/DESCRIPTION | 9 ++--- extremevalues-2.3.3/extremevalues/MD5 | 16 ++++++---- extremevalues-2.3.3/extremevalues/NAMESPACE | 2 - extremevalues-2.3.3/extremevalues/NEWS | 4 ++ extremevalues-2.3.3/extremevalues/R/evGui.r | 14 ++++++-- extremevalues-2.3.3/extremevalues/R/outlierPlot.r | 2 - extremevalues-2.3.3/extremevalues/build |only extremevalues-2.3.3/extremevalues/inst/doc/SN201003.Rnw |only extremevalues-2.3.3/extremevalues/inst/doc/SN201003.pdf |only extremevalues-2.3.3/extremevalues/vignettes |only 11 files changed, 30 insertions(+), 17 deletions(-)
Title: A Comprehensive R Interface for the DSSAT Cropping Systems Model
Description: The purpose of this package is to provide a comprehensive
R interface to the Decision Support System for Agrotechnology
Transfer Cropping Systems Model (DSSAT-CSM) documented by
Jones et al (2003) <doi:10.1016/S1161-0301(02)00107-7>. The package
provides cross-platform functions to read and write input files,
run DSSAT-CSM, and read output files.
Author: Phillip D. Alderman [aut, cre]
Maintainer: Phillip D. Alderman <phillip.alderman@okstate.edu>
Diff between DSSAT versions 0.0.1 dated 2020-03-19 and 0.0.2 dated 2020-05-18
DESCRIPTION | 8 +++--- MD5 | 48 +++++++++++++++++++-------------------- NEWS.md | 4 +++ R/collapse_rows.R | 10 ++++---- README.md | 2 - man/combine_tiers.Rd | 3 -- man/header_to_fwf_position.Rd | 9 +++++-- man/read_cul.Rd | 9 ++++--- man/read_dssat.Rd | 10 ++++++-- man/read_eco.Rd | 9 ++++--- man/read_filea.Rd | 3 -- man/read_filet.Rd | 3 -- man/read_filex.Rd | 3 -- man/read_output.Rd | 9 +++++-- man/read_soil_profile.Rd | 8 ++++-- man/read_sol.Rd | 9 +++++-- man/read_tier.Rd | 13 ++++++++-- man/read_tier_data.Rd | 14 ++++++++--- man/write_dssbatch.Rd | 3 -- man/write_dssbatch.data.frame.Rd | 3 -- man/write_dssbatch.default.Rd | 3 -- man/write_dssbatch.tbl_df.Rd | 3 -- man/write_filex.Rd | 3 -- man/write_sol.Rd | 3 -- man/write_tier.Rd | 8 ++++-- 25 files changed, 122 insertions(+), 78 deletions(-)
Title: Detecting Changes in Autocorrelated and Fluctuating Signals
Description: Detect abrupt changes in time series with local fluctuations as a random walk process and autocorrelated noise as an AR(1) process. See Romano, G., Rigaill, G., Runge, V., Fearnhead, P. (2020) <arXiv:2005.01379>.
Author: Gaetano Romano [aut, cre],
Guillem Rigaill [aut],
Vincent Runge [aut],
Paul Fearnhead [aut]
Maintainer: Gaetano Romano <g.romano@lancaster.ac.uk>
Diff between DeCAFS versions 3.1.4 dated 2020-05-11 and 3.1.5 dated 2020-05-18
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------- R/DeCAFS.R | 15 +++++--- R/RcppExports.R | 2 - man/DeCAFS.Rd | 13 ++++--- src/RcppExports.cpp | 10 ++--- src/algorithms.cpp | 96 ++++++++++++++++++++++++++-------------------------- src/algorithms.h | 16 ++++---- src/fpop.cpp | 2 - src/fpopmain.cpp | 12 +++--- src/fpopmain.h | 2 - src/quadratic.cpp | 28 +++++++-------- src/quadratic.h | 20 +++++----- 13 files changed, 131 insertions(+), 117 deletions(-)
Title: 'DataSHIELD' Implementation for 'Opal'
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This package is the 'DataSHIELD' interface implementation for 'Opal', which is
the data integration application for biobanks by 'OBiBa'. Participant data, once
collected from any data source, must be integrated and stored in a central
data repository under a uniform model. 'Opal' is such a central repository.
It can import, process, validate, query, analyze, report, and export data.
'Opal' is the reference implementation of the 'DataSHIELD' infrastructure.
Author: Yannick Marcon [aut, cre] (<https://orcid.org/0000-0003-0138-2023>),
Becca Wilson [ctb] (<https://orcid.org/0000-0003-2294-593X>),
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between DSOpal versions 1.0.0 dated 2020-04-27 and 1.1.0 dated 2020-05-18
DESCRIPTION | 8 - MD5 | 14 ++- NAMESPACE | 3 R/OpalConnection.R | 112 +++++++++++++++++++++++++- R/datashield.assign.r | 23 +++++ inst/examples/datashield-api.R | 11 ++ man/dot-datashield.assign.resource.Rd |only man/dsAssignResource-OpalConnection-method.Rd |only man/dsHasResource-OpalConnection-method.Rd |only man/dsListResources-OpalConnection-method.Rd |only 10 files changed, 160 insertions(+), 11 deletions(-)
Title: 'DataSHIELD' Implementation on Local Datasets
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This 'DataSHIELD Interface' implementation is for analyzing datasets living
in the current R session. The purpose of this is primarily for lightweight
'DataSHIELD' analysis package development.
Author: Yannick Marcon [aut, cre] (<https://orcid.org/0000-0003-0138-2023>)
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between DSLite versions 1.0.0 dated 2020-04-10 and 1.1.0 dated 2020-05-18
DESCRIPTION | 10 ++-- MD5 | 20 +++++--- NAMESPACE | 3 + R/DSLiteConnection.R | 54 +++++++++++++++++++++++- R/DSLiteServer.R | 44 +++++++++++++++++-- README.md | 1 inst/examples/datashield-resources.R |only inst/examples/datashield.R | 6 ++ man/DSLiteServer.Rd | 54 ++++++++++++++++++++++++ man/dsAssignResource-DSLiteConnection-method.Rd |only man/dsHasResource-DSLiteConnection-method.Rd |only man/dsListResources-DSLiteConnection-method.Rd |only man/newDSLiteServer.Rd | 3 + 13 files changed, 177 insertions(+), 18 deletions(-)
Title: Computation of Parameters Used in Preliminary Assessment of
Conservation Status
Description: Multi-species estimation of geographical range parameters
for preliminary assessment of conservation status following Criterion B of the
International Union for Conservation of Nature (IUCN,
see <http://www.iucnredlist.org>).
Author: Gilles Dauby [cre, aut] (<https://orcid.org/0000-0002-9498-413X>)
Maintainer: Gilles Dauby <gildauby@gmail.com>
Diff between ConR versions 1.2.4 dated 2019-10-14 and 1.3.0 dated 2020-05-18
ConR-1.2.4/ConR/README.md |only ConR-1.2.4/ConR/build |only ConR-1.2.4/ConR/data/datalist |only ConR-1.2.4/ConR/inst |only ConR-1.2.4/ConR/man/ConR-package.Rd |only ConR-1.2.4/ConR/tests/testthat/EOO.results.csv |only ConR-1.2.4/ConR/vignettes |only ConR-1.3.0/ConR/DESCRIPTION | 24 ConR-1.3.0/ConR/MD5 | 76 ConR-1.3.0/ConR/NAMESPACE | 98 ConR-1.3.0/ConR/NEWS.md |only ConR-1.3.0/ConR/R/IUCNeval.functionv11.R | 3911 +++++++++++++++++------ ConR-1.3.0/ConR/man/AOO.computing.Rd | 82 ConR-1.3.0/ConR/man/EOO.computing.Rd | 182 - ConR-1.3.0/ConR/man/IUCN.eval.Rd | 370 +- ConR-1.3.0/ConR/man/Madagascar.protec.Rd | 40 ConR-1.3.0/ConR/man/Malagasy.amphibian.Rd | 66 ConR-1.3.0/ConR/man/dataset.ex.Rd | 28 ConR-1.3.0/ConR/man/dot-AOO.estimation.Rd |only ConR-1.3.0/ConR/man/dot-Convex.Hull.Poly.Rd |only ConR-1.3.0/ConR/man/dot-EOO.comp.Rd |only ConR-1.3.0/ConR/man/dot-IUCN.comp.Rd |only ConR-1.3.0/ConR/man/dot-ahull_to_SPLDF.Rd |only ConR-1.3.0/ConR/man/dot-alpha.hull.poly.Rd |only ConR-1.3.0/ConR/man/dot-cell.occupied.Rd |only ConR-1.3.0/ConR/man/dot-crop.poly.Rd |only ConR-1.3.0/ConR/man/dot-proj_crs.Rd |only ConR-1.3.0/ConR/man/dot-prop_threat.Rd |only ConR-1.3.0/ConR/man/dot-subpop.comp.Rd |only ConR-1.3.0/ConR/man/land.Rd | 34 ConR-1.3.0/ConR/man/locations.comp.Rd | 98 ConR-1.3.0/ConR/man/map.res.Rd | 105 ConR-1.3.0/ConR/man/subpop.comp.Rd | 61 ConR-1.3.0/ConR/tests/testthat/IUCN_results.xlsx |binary ConR-1.3.0/ConR/tests/testthat/test-1.R | 24 ConR-1.3.0/ConR/tests/testthat/test-2.R | 18 ConR-1.3.0/ConR/tests/testthat/test-3.R | 16 ConR-1.3.0/ConR/tests/testthat/test-4.R |only 38 files changed, 3645 insertions(+), 1588 deletions(-)
Title: Wrapper Functions to the 'BMRS API'
Description: A set of wrapper functions to better interact with the 'Balancing Mechanism
Reporting System API'.
Author: Adam Rawles [aut, cre]
Maintainer: Adam Rawles <adamrawles@hotmail.co.uk>
Diff between BMRSr versions 1.0.0 dated 2019-09-03 and 1.0.1 dated 2020-05-18
DESCRIPTION | 10 MD5 | 65 +++-- NEWS.md | 20 + R/build.R | 2 R/main.R | 5 R/parse.R | 25 + R/send_receive.R | 22 - R/sysdata.rda |binary R/utility.R | 116 ++------- README.md | 168 +++++++++---- build/vignette.rds |binary inst/doc/using_BMRSr.R | 28 +- inst/doc/using_BMRSr.Rmd | 6 inst/doc/using_BMRSr.html | 389 +++++++++++++++++++++++-------- man/build_b_call.Rd | 27 +- man/build_call.Rd | 10 man/build_legacy_call.Rd | 46 ++- man/build_remit_call.Rd | 31 +- man/check_data_item.Rd | 6 man/figures/README-unnamed-chunk-9-1.png |binary man/figures/apple-touch-icon-120x120.png |only man/figures/apple-touch-icon-152x152.png |only man/figures/apple-touch-icon-180x180.png |only man/figures/apple-touch-icon-60x60.png |only man/figures/apple-touch-icon-76x76.png |only man/figures/apple-touch-icon.png |only man/figures/favicon-16x16.png |only man/figures/favicon-32x32.png |only man/figures/favicon.ico |only man/figures/logo.png |only man/full_request.Rd | 11 man/generation_dataset_example.Rd | 6 man/get_column_names.Rd | 4 man/get_data_items.Rd | 5 man/parse_response.Rd | 6 tests/testthat/test_build.R | 4 tests/testthat/test_parse.R |only tests/testthat/test_util.R | 15 + vignettes/using_BMRSr.Rmd | 6 39 files changed, 683 insertions(+), 350 deletions(-)
Title: Lightweight and Feature Complete Unit Testing Framework
Description: Provides a lightweight (zero-dependency) and easy to use
unit testing framework. Main features: install tests with
the package. Test results are treated as data that can be stored and
manipulated. Test files are R scripts interspersed with test commands, that
can be programmed over. Fully automated build-install-test sequence for
packages. Skip tests when not run locally (e.g. on CRAN). Flexible and
configurable output printing. Compare computed output with output stored
with the package. Run tests in parallel. Extensible by other packages.
Report side effects.
Author: Mark van der Loo [aut, cre] (<https://orcid.org/0000-0002-9807-4686>)
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between tinytest versions 1.2.0 dated 2020-05-06 and 1.2.1 dated 2020-05-18
DESCRIPTION | 6 - MD5 | 13 +- NEWS | 6 + R/expectations.R | 223 ++++++++++++++++++++++++--------------- inst/doc/tinytest_examples.pdf |binary inst/doc/using_tinytest.pdf |binary inst/tinytest/test_gh_issue_51.R |only inst/tinytest/test_tiny.R | 28 ++++ 8 files changed, 184 insertions(+), 92 deletions(-)
Title: 'Opal' Data Repository Client and 'DataSHIELD' Utils
Description: Data integration Web application for biobanks by 'OBiBa'. 'Opal' is
the core database application for biobanks. Participant data, once
collected from any data source, must be integrated and stored in a central
data repository under a uniform model. 'Opal' is such a central repository.
It can import, process, validate, query, analyze, report, and export data.
'Opal' is typically used in a research center to analyze the data acquired at
assessment centres. Its ultimate purpose is to achieve seamless
data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal'
web services and to perform operations on the R server side. 'DataSHIELD'
administration tools are also provided.
Author: Yannick Marcon [aut, cre] (<https://orcid.org/0000-0003-0138-2023>),
Amadou Gaye [ctb] (<https://orcid.org/0000-0002-1180-2792>),
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between opalr versions 1.3.0 dated 2019-12-10 and 1.4.0 dated 2020-05-18
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++++-------------- NAMESPACE | 3 +++ R/harmo.dictionary.R | 2 +- R/opal.assign.r | 36 +++++++++++++++++++++++++++++++++++- R/opal.resource.r |only build/vignette.rds |binary inst/doc/opal-files.html | 8 ++++---- inst/doc/opal-projects.html | 8 ++++---- inst/doc/opal-rsession.html | 8 ++++---- man/harmo.dictionary_update.Rd | 2 +- man/opal.assign.Rd | 1 + man/opal.assign.data.Rd | 1 + man/opal.assign.resource.Rd |only man/opal.assign.script.Rd | 1 + man/opal.assign.table.Rd | 1 + man/opal.assign.table.tibble.Rd | 3 ++- man/opal.resource.Rd |only man/opal.resources.Rd |only 19 files changed, 80 insertions(+), 34 deletions(-)
Title: High-Dimensional Regression with Measurement Error
Description: Penalized regression for generalized linear models for
measurement error problems (aka. errors-in-variables). The package
contains a version of the lasso (L1-penalization) which corrects
for measurement error (Sorensen et al. (2015) <doi:10.5705/ss.2013.180>).
It also contains an implementation of the Generalized Matrix Uncertainty
Selector, which is a version the (Generalized) Dantzig Selector for the
case of measurement error (Sorensen et al. (2018) <doi:10.1080/10618600.2018.1425626>).
Author: Oystein Sorensen
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between hdme versions 0.3.2 dated 2019-11-11 and 0.3.3 dated 2020-05-18
DESCRIPTION | 10 MD5 | 28 +- NEWS.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/hdme.R | 95 +++---- inst/doc/hdme.Rmd | 24 - inst/doc/hdme.html | 558 +++++++++++++++++++++------------------------- man/corrected_lasso.Rd | 13 - man/cv_corrected_lasso.Rd | 13 - man/cv_gds.Rd | 11 man/gmu_lasso.Rd | 11 man/gmus.Rd | 3 man/mus_glm.Rd | 3 vignettes/hdme.Rmd | 24 - 15 files changed, 366 insertions(+), 431 deletions(-)
Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Description: Variogram modelling; simple, ordinary and universal point or block (co)kriging; spatio-temporal kriging; sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions; supports sf and stars.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between gstat versions 2.0-5 dated 2020-04-04 and 2.0-6 dated 2020-05-18
DESCRIPTION | 6 ++-- MD5 | 52 +++++++++++++++++------------------ NEWS.md | 4 ++ R/variogramST.R | 27 +++++++++--------- build/vignette.rds |binary data/DE_RB_2005.rda |binary data/coalash.rda |binary data/fulmar.rda |binary data/jura.rda |binary data/meuse.all.rda |binary data/meuse.alt.rda |binary data/ncp.grid.rda |binary data/oxford.rda |binary data/pcb.rda |binary data/sic2004.rda |binary data/sic97.rda |binary data/tull.rda |binary data/vv.rda |binary data/walker.rda |binary data/wind.rda |binary inst/doc/gstat.R | 1 inst/doc/gstat.pdf |binary inst/doc/prs.R | 1 inst/doc/prs.pdf |binary inst/doc/spatio-temporal-kriging.pdf |binary inst/doc/st.R | 1 inst/doc/st.pdf |binary 27 files changed, 47 insertions(+), 45 deletions(-)
Title: 'DataSHIELD' Interface
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This package defines the API that is to be implemented by 'DataSHIELD' compliant
data repositories.
Author: Yannick Marcon [aut, cre] (<https://orcid.org/0000-0003-0138-2023>),
Amadou Gaye [ctb] (<https://orcid.org/0000-0002-1180-2792>),
Paul Burton [ctb]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between DSI versions 1.0.0 dated 2020-04-03 and 1.1.0 dated 2020-05-18
DESCRIPTION | 14 +- MD5 | 81 ++++++++++------- NAMESPACE | 8 + R/DSConnection.R | 79 ++++++++++++++++ R/DSLoginBuilder.R | 22 +++- R/datashield.aggregate.R | 55 +++++++++-- R/datashield.assign.R | 164 +++++++++++++++++++++++++++++++---- R/datashield.errors.R |only R/datashield.list.R |only R/datashield.login.R | 86 ++++++++++++++++-- R/datashield.logout.R | 1 R/datashield.status.R | 34 +++++++ R/utils.R | 57 +++++++++++- README.md | 2 build/DSI.pdf |binary man/DSConnection-class.Rd | 3 man/DSLoginBuilder.Rd | 11 ++ man/datashield.aggregate.Rd | 7 + man/datashield.assign.expr.Rd | 4 man/datashield.assign.resource.Rd |only man/datashield.errors.Rd |only man/datashield.login.Rd | 28 ++++- man/datashield.resource_status.Rd |only man/datashield.resources.Rd |only man/datashield.tables.Rd |only man/dot-appendError.Rd |only man/dot-asNamedListOfResources.Rd |only man/dot-checkLastErrors.Rd |only man/dot-clearLastErrors.Rd |only man/dot-hasLastErrors.Rd |only man/dsAggregate.Rd | 3 man/dsAssignExpr.Rd | 3 man/dsAssignResource.Rd |only man/dsAssignTable.Rd | 3 man/dsDisconnect.Rd | 3 man/dsGetInfo.Rd | 3 man/dsHasResource.Rd |only man/dsHasTable.Rd | 3 man/dsIsAsync.Rd | 5 - man/dsListMethods.Rd | 3 man/dsListPackages.Rd | 3 man/dsListResources.Rd |only man/dsListSymbols.Rd | 3 man/dsListTables.Rd | 3 man/dsListWorkspaces.Rd | 3 man/dsRmSymbol.Rd | 3 man/dsRmWorkspace.Rd | 3 man/dsSaveWorkspace.Rd | 3 tests/testthat/test-dsloginbuilder.R | 16 ++- 49 files changed, 617 insertions(+), 102 deletions(-)
Title: Conditional Random Fields for Labelling Sequential Data in
Natural Language Processing
Description: Wraps the 'CRFsuite' library <https://github.com/chokkan/crfsuite> allowing users
to fit a Conditional Random Field model and to apply it on existing data.
The focus of the implementation is in the area of Natural Language Processing where this R package allows you to easily build and apply models
for named entity recognition, text chunking, part of speech tagging, intent recognition or classification of any category you have in mind. Next to training, a small web application
is included in the package to allow you to easily construct training data.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Naoaki Okazaki [aut, ctb, cph] (CRFsuite library (BSD licensed),
libLBFGS library (MIT licensed), Constant Quark Database software
(BSD licensed)),
Bob Jenkins [aut, ctb] (File src/cqdb/src/lookup3.c (Public Domain)),
Jorge Nocedal [aut, ctb, cph] (libLBFGS library (MIT licensed)),
Jesse Long [aut, ctb, cph] (RumAVL library (MIT licensed))
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between crfsuite versions 0.3.1 dated 2020-04-27 and 0.3.2 dated 2020-05-18
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/modelling.R | 2 ++ R/training_data.R | 3 ++- inst/doc/crfsuite-nlp.html | 26 +++++++++++++------------- man/crf.Rd | 2 ++ man/merge.chunkrange.Rd | 3 ++- 8 files changed, 35 insertions(+), 25 deletions(-)
Title: Survival Regression with Smoothed Error Distribution
Description: Contains, as a main contribution, a function to fit
a regression model with possibly right, left or interval
censored observations and with the error distribution
expressed as a mixture of G-splines. Core part
of the computation is done in compiled C++ written
using the Scythe Statistical Library Version 0.3.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Diff between smoothSurv versions 2.1 dated 2020-02-10 and 2.2 dated 2020-05-18
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 5 +++++ src/Scythe_IDE.cpp | 47 +++++++++++++++++++++++++++++++---------------- 4 files changed, 43 insertions(+), 23 deletions(-)
Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (<http://mosaic-web.org>) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim [aut, cre],
Daniel T. Kaplan [aut],
Nicholas J. Horton [aut]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaic versions 1.6.0 dated 2020-03-06 and 1.7.0 dated 2020-05-18
mosaic-1.6.0/mosaic/inst/doc/GraphicsWithMosaic.R |only mosaic-1.6.0/mosaic/inst/doc/GraphicsWithMosaic.Rmd |only mosaic-1.6.0/mosaic/inst/doc/GraphicsWithMosaic.html |only mosaic-1.6.0/mosaic/inst/doc/LessVolume-MoreCreativity.R |only mosaic-1.6.0/mosaic/inst/doc/LessVolume-MoreCreativity.Rmd |only mosaic-1.6.0/mosaic/inst/doc/LessVolume-MoreCreativity.html |only mosaic-1.6.0/mosaic/inst/doc/Resampling.Rnw |only mosaic-1.6.0/mosaic/inst/doc/Resampling.pdf |only mosaic-1.6.0/mosaic/inst/doc/ggformula-lattice.R |only mosaic-1.6.0/mosaic/inst/doc/ggformula-lattice.Rmd |only mosaic-1.6.0/mosaic/inst/doc/ggformula-lattice.html |only mosaic-1.6.0/mosaic/tests/testthat/Rplots.pdf |only mosaic-1.6.0/mosaic/vignettes/GraphicsWithMosaic.Rmd |only mosaic-1.6.0/mosaic/vignettes/LessVolume-MoreCreativity.Rmd |only mosaic-1.6.0/mosaic/vignettes/LessVolume-MoreCreativity_files |only mosaic-1.6.0/mosaic/vignettes/Resampling.Rnw |only mosaic-1.6.0/mosaic/vignettes/ggformula-lattice.Rmd |only mosaic-1.6.0/mosaic/vignettes/half-mplot.png |only mosaic-1.6.0/mosaic/vignettes/mplot.png |only mosaic-1.6.0/mosaic/vignettes/pruim-horton-kaplan.bib |only mosaic-1.7.0/mosaic/DESCRIPTION | 14 - mosaic-1.7.0/mosaic/MD5 | 94 ++++------ mosaic-1.7.0/mosaic/NEWS.md | 10 - mosaic-1.7.0/mosaic/R/aggregatingMeta.R | 12 - mosaic-1.7.0/mosaic/R/confint.R | 13 + mosaic-1.7.0/mosaic/build/vignette.rds |binary mosaic-1.7.0/mosaic/inst/doc/MinimalRgg.R | 40 ++-- mosaic-1.7.0/mosaic/inst/doc/MinimalRgg.pdf |binary mosaic-1.7.0/mosaic/inst/doc/Resampling.R | 12 - mosaic-1.7.0/mosaic/inst/doc/Resampling.Rmd |only mosaic-1.7.0/mosaic/inst/doc/Resampling.html |only mosaic-1.7.0/mosaic/inst/doc/mosaic-resources.Rmd | 7 mosaic-1.7.0/mosaic/inst/doc/mosaic-resources.html | 11 - mosaic-1.7.0/mosaic/man/binom.test.Rd | 4 mosaic-1.7.0/mosaic/man/ttest.Rd | 6 mosaic-1.7.0/mosaic/tests/testthat/test-aggregating.R | 10 + mosaic-1.7.0/mosaic/tests/testthat/test-binomtest.R | 10 - mosaic-1.7.0/mosaic/vignettes/Resampling.Rmd |only mosaic-1.7.0/mosaic/vignettes/mosaic-resources.Rmd | 7 mosaic-1.7.0/mosaic/vignettes/web-only |only 40 files changed, 148 insertions(+), 102 deletions(-)
Title: Genetic and Isotopic Assignment Accounting for Habitat
Suitability
Description: Tools for using genetic markers, stable isotope data, and habitat
suitability data to calculate posterior probabilities of breeding origin of
migrating birds.
Author: Eric C. Anderson [cre, aut]
Maintainer: Eric C. Anderson <eric.anderson@noaa.gov>
Diff between gaiah versions 0.0.2 dated 2017-03-02 and 0.0.4 dated 2020-05-18
DESCRIPTION | 14 +++---- MD5 | 64 ++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 8 ++++ R/import.R | 3 + R/isotope-maneuvers.R | 36 +++++++++++++----- man/breeding_wiwa_genetic_posteriors.Rd | 7 ++- man/breeding_wiwa_isotopes.Rd | 7 ++- man/comboize.Rd | 1 man/comboize_and_fortify.Rd | 11 ++++- man/example_isotope_posteriors.Rd | 5 +- man/extract_isopredictions.Rd | 1 man/gaiah.Rd | 2 - man/genetic_posteriors2rasters.Rd | 1 man/genetic_regions.Rd | 7 ++- man/get_wrld_simpl.Rd | 1 man/great_circle_raster.Rd | 1 man/group_birds_by_location.Rd | 10 +++-- man/hpd_cumul.Rd | 1 man/isomap2raster.Rd | 1 man/isomap_job54152_prediction.Rd | 7 ++- man/isotope_posterior_probs.Rd | 12 ++++-- man/migrant_wiwa_genetic_posteriors.Rd | 7 ++- man/migrant_wiwa_isotopes.Rd | 7 ++- man/min_hpd_inc_area_df.Rd | 1 man/min_hpd_inclusion_area.Rd | 1 man/pipe.Rd | 1 man/private_rescale.Rd | 1 man/vza_assign.Rd | 1 man/vza_mean_and_var_rasters.Rd | 1 man/vza_rescale.Rd | 1 man/wiwa_breed.Rd | 7 ++- man/wiwa_habitat_unclipped.Rd | 5 +- 33 files changed, 134 insertions(+), 100 deletions(-)
More information about FeatureImpCluster at CRAN
Permanent link
Title: R Interface to COVID-19 Data Hub
Description: Unified datasets for a better understanding of COVID-19.
The package collects COVID-19 data across governmental sources,
includes policy measures from 'Oxford COVID-19 Government Response Tracker' <https://www.bsg.ox.ac.uk/covidtracker>,
and extends the dataset via an interface to 'World Bank Open Data' <https://data.worldbank.org/>, 'Google Mobility Reports' <https://www.google.com/covid19/mobility/>, 'Apple Mobility Reports' <https://www.apple.com/covid19/mobility>.
Author: Emanuele Guidotti [aut, cre] (<https://orcid.org/0000-0002-8961-6623>),
David Ardia [ctb] (<https://orcid.org/0000-0003-2823-782X>)
Maintainer: Emanuele Guidotti <emanuele.guidotti@unine.ch>
Diff between COVID19 versions 1.0.0 dated 2020-04-20 and 2.0.0 dated 2020-05-18
COVID19-1.0.0/COVID19/R/ASM.R |only COVID19-1.0.0/COVID19/R/CHE.R |only COVID19-1.0.0/COVID19/R/CZE.R |only COVID19-1.0.0/COVID19/R/DPC.R |only COVID19-1.0.0/COVID19/R/GPC.R |only COVID19-1.0.0/COVID19/R/GUM.R |only COVID19-1.0.0/COVID19/R/ISO.R |only COVID19-1.0.0/COVID19/R/ITA.R |only COVID19-1.0.0/COVID19/R/LIE.R |only COVID19-1.0.0/COVID19/R/MNP.R |only COVID19-1.0.0/COVID19/R/MSZ.R |only COVID19-1.0.0/COVID19/R/PRI.R |only COVID19-1.0.0/COVID19/R/SWE.R |only COVID19-1.0.0/COVID19/R/USA.R |only COVID19-1.0.0/COVID19/R/VIR.R |only COVID19-1.0.0/COVID19/R/datasource.R |only COVID19-1.0.0/COVID19/R/jhuCSSE.R |only COVID19-1.0.0/COVID19/R/mzcr.R |only COVID19-1.0.0/COVID19/R/openZH.R |only COVID19-1.0.0/COVID19/R/oppnadata.R |only COVID19-1.0.0/COVID19/R/pcmdpc.R |only COVID19-1.0.0/COVID19/R/world.R |only COVID19-1.0.0/COVID19/build/vignette.rds |only COVID19-1.0.0/COVID19/inst/doc |only COVID19-1.0.0/COVID19/inst/extdata |only COVID19-1.0.0/COVID19/vignettes |only COVID19-2.0.0/COVID19/DESCRIPTION | 21 +- COVID19-2.0.0/COVID19/MD5 | 62 +----- COVID19-2.0.0/COVID19/NAMESPACE | 2 COVID19-2.0.0/COVID19/R/apple.R | 36 ++- COVID19-2.0.0/COVID19/R/covid19.R | 317 ++++++++++++------------------- COVID19-2.0.0/COVID19/R/google.R |only COVID19-2.0.0/COVID19/R/utils.R | 300 +++++++++-------------------- COVID19-2.0.0/COVID19/R/wb.R |only COVID19-2.0.0/COVID19/README.md | 251 ++++-------------------- COVID19-2.0.0/COVID19/build/partial.rdb |binary COVID19-2.0.0/COVID19/inst/CITATION | 3 COVID19-2.0.0/COVID19/man/covid19.Rd | 203 +++++++++++-------- 38 files changed, 439 insertions(+), 756 deletions(-)
Title: Learn Foreign Language Vocabulary
Description: Use the R console as an interactive learning environment to memorize any two columns dataset.
Author: Félix Luginbuhl [aut, cre]
Maintainer: Félix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between polyglot versions 0.2.1 dated 2018-11-01 and 0.3.0 dated 2020-05-18
polyglot-0.2.1/polyglot/LICENSE |only polyglot-0.3.0/polyglot/DESCRIPTION | 17 +- polyglot-0.3.0/polyglot/MD5 | 22 +-- polyglot-0.3.0/polyglot/NAMESPACE | 2 polyglot-0.3.0/polyglot/NEWS.md |only polyglot-0.3.0/polyglot/R/get_examples.R |only polyglot-0.3.0/polyglot/R/learn.R | 44 ++---- polyglot-0.3.0/polyglot/R/learn_dir.R | 8 - polyglot-0.3.0/polyglot/R/sessionQuestions.R | 9 - polyglot-0.3.0/polyglot/README.md | 69 ++++++---- polyglot-0.3.0/polyglot/inst/extdata/Countries_of_the_World.csv |only polyglot-0.3.0/polyglot/inst/extdata/IBA_Official_Cocktails.csv |only polyglot-0.3.0/polyglot/man/get_examples.Rd |only polyglot-0.3.0/polyglot/man/learn.Rd | 11 - polyglot-0.3.0/polyglot/man/learn_dir.Rd | 6 15 files changed, 105 insertions(+), 83 deletions(-)
Title: Latent Unknown Clustering with Integrated Data
Description: An implementation for the 'LUCID' model (Peng (2019) <doi:10.1093/bioinformatics/btz667>) to jointly estimate latent unknown clusters/subgroups with integrated data.
An EM algorithm is used to obtain the latent cluster assignment and model parameter estimates.
Feature selection is achieved by applying the L1 regularization method.
Author: Yinqi Zhao, Cheng Peng, Zhao Yang, David V. Conti
Maintainer: Yinqi Zhao <yinqiz@usc.edu>
Diff between LUCIDus versions 1.0.0 dated 2019-12-02 and 2.0.0 dated 2020-05-18
LUCIDus-1.0.0/LUCIDus/R/def_initial.R |only LUCIDus-1.0.0/LUCIDus/R/def_tol.R |only LUCIDus-1.0.0/LUCIDus/R/def_tune.R |only LUCIDus-1.0.0/LUCIDus/R/sem_lucid.R |only LUCIDus-1.0.0/LUCIDus/data/CoG.rda |only LUCIDus-1.0.0/LUCIDus/data/CoY.rda |only LUCIDus-1.0.0/LUCIDus/data/Z1_Incomp.rda |only LUCIDus-1.0.0/LUCIDus/inst/doc/LUCIDus-vignette.R |only LUCIDus-1.0.0/LUCIDus/inst/doc/LUCIDus-vignette.Rmd |only LUCIDus-1.0.0/LUCIDus/inst/doc/LUCIDus-vignette.html |only LUCIDus-1.0.0/LUCIDus/man/CoG.Rd |only LUCIDus-1.0.0/LUCIDus/man/CoY.Rd |only LUCIDus-1.0.0/LUCIDus/man/Z1_Incomp.Rd |only LUCIDus-1.0.0/LUCIDus/man/boot_lucid.Rd |only LUCIDus-1.0.0/LUCIDus/man/def_initial.Rd |only LUCIDus-1.0.0/LUCIDus/man/def_tol.Rd |only LUCIDus-1.0.0/LUCIDus/man/def_tune.Rd |only LUCIDus-1.0.0/LUCIDus/man/est_lucid.Rd |only LUCIDus-1.0.0/LUCIDus/man/plot_lucid.Rd |only LUCIDus-1.0.0/LUCIDus/man/pred_lucid.Rd |only LUCIDus-1.0.0/LUCIDus/man/sem_lucid.Rd |only LUCIDus-1.0.0/LUCIDus/man/summary_lucid.Rd |only LUCIDus-1.0.0/LUCIDus/man/tune_lucid.Rd |only LUCIDus-1.0.0/LUCIDus/tests |only LUCIDus-1.0.0/LUCIDus/vignettes/LUCIDus-vignette.Rmd |only LUCIDus-2.0.0/LUCIDus/DESCRIPTION | 27 LUCIDus-2.0.0/LUCIDus/MD5 | 108 LUCIDus-2.0.0/LUCIDus/NAMESPACE | 40 LUCIDus-2.0.0/LUCIDus/NEWS.md | 15 LUCIDus-2.0.0/LUCIDus/R/boot_lucid.R | 214 - LUCIDus-2.0.0/LUCIDus/R/data.R | 84 LUCIDus-2.0.0/LUCIDus/R/def_lucid.R |only LUCIDus-2.0.0/LUCIDus/R/est_lucid.R | 2704 ++----------------- LUCIDus-2.0.0/LUCIDus/R/family.R |only LUCIDus-2.0.0/LUCIDus/R/plot_lucid.R | 108 LUCIDus-2.0.0/LUCIDus/R/pred_lucid.R | 222 - LUCIDus-2.0.0/LUCIDus/R/summary_lucid.R | 203 - LUCIDus-2.0.0/LUCIDus/R/tune_lucid.R | 189 - LUCIDus-2.0.0/LUCIDus/README.md | 217 - LUCIDus-2.0.0/LUCIDus/build/vignette.rds |binary LUCIDus-2.0.0/LUCIDus/data/CovY.rda |only LUCIDus-2.0.0/LUCIDus/data/G1.rda |binary LUCIDus-2.0.0/LUCIDus/data/G2.rda |binary LUCIDus-2.0.0/LUCIDus/data/Y1.rda |binary LUCIDus-2.0.0/LUCIDus/data/Y2.rda |binary LUCIDus-2.0.0/LUCIDus/data/Z1.rda |binary LUCIDus-2.0.0/LUCIDus/data/Z2.rda |binary LUCIDus-2.0.0/LUCIDus/inst/CITATION | 5 LUCIDus-2.0.0/LUCIDus/inst/doc/LUCID_vignette.R |only LUCIDus-2.0.0/LUCIDus/inst/doc/LUCID_vignette.Rmd |only LUCIDus-2.0.0/LUCIDus/inst/doc/LUCID_vignette.html |only LUCIDus-2.0.0/LUCIDus/man/CovY.Rd |only LUCIDus-2.0.0/LUCIDus/man/G1.Rd | 9 LUCIDus-2.0.0/LUCIDus/man/G2.Rd | 9 LUCIDus-2.0.0/LUCIDus/man/Y1.Rd | 9 LUCIDus-2.0.0/LUCIDus/man/Y2.Rd | 9 LUCIDus-2.0.0/LUCIDus/man/Z1.Rd | 13 LUCIDus-2.0.0/LUCIDus/man/Z2.Rd | 13 LUCIDus-2.0.0/LUCIDus/man/boot.lucid.Rd |only LUCIDus-2.0.0/LUCIDus/man/def.control.Rd |only LUCIDus-2.0.0/LUCIDus/man/def.tune.Rd |only LUCIDus-2.0.0/LUCIDus/man/est.lucid.Rd |only LUCIDus-2.0.0/LUCIDus/man/figures/DAG.png |only LUCIDus-2.0.0/LUCIDus/man/figures/Sankey1.png |binary LUCIDus-2.0.0/LUCIDus/man/figures/Sankey2.png |binary LUCIDus-2.0.0/LUCIDus/man/figures/equation1.png |only LUCIDus-2.0.0/LUCIDus/man/figures/equation2.png |only LUCIDus-2.0.0/LUCIDus/man/figures/equation3.png |only LUCIDus-2.0.0/LUCIDus/man/figures/equation4.png |only LUCIDus-2.0.0/LUCIDus/man/figures/fit1.png |only LUCIDus-2.0.0/LUCIDus/man/figures/sum1.png |only LUCIDus-2.0.0/LUCIDus/man/figures/sum2.png |only LUCIDus-2.0.0/LUCIDus/man/plot.lucid.Rd |only LUCIDus-2.0.0/LUCIDus/man/predict.lucid.Rd |only LUCIDus-2.0.0/LUCIDus/man/print.lucid.Rd |only LUCIDus-2.0.0/LUCIDus/man/print.sumlucid.Rd |only LUCIDus-2.0.0/LUCIDus/man/summary.lucid.Rd |only LUCIDus-2.0.0/LUCIDus/man/tune.lucid.Rd |only LUCIDus-2.0.0/LUCIDus/vignettes/DAG.png |only LUCIDus-2.0.0/LUCIDus/vignettes/LUCID_vignette.Rmd |only LUCIDus-2.0.0/LUCIDus/vignettes/fig3.png |only 81 files changed, 878 insertions(+), 3320 deletions(-)
Title: Utilities for Importing Data from Plain Text Accounting Files
Description: Utilities for querying plain text accounting files from 'Ledger', 'HLedger', and 'Beancount'.
Author: Trevor L Davis [aut, cre],
Jenya Sovetkin [ctb],
Chris Lloyd [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between ledger versions 2.0.6 dated 2020-02-16 and 2.0.7 dated 2020-05-18
DESCRIPTION | 14 ++++++++------ MD5 | 6 +++--- NEWS.md | 6 ++++++ R/register.r | 3 +-- 4 files changed, 18 insertions(+), 11 deletions(-)
Title: Comparison of Survival Curves Between Two Groups
Description: Various statistical methods for survival analysis in comparing survival curves between two groups, including overall hypothesis tests described in Li et al. (2015) <doi:10.1371/journal.pone.0116774>, fixed-point tests in Klein et al. (2007) <doi:10.1002/sim.2864>, short-term tests, and long-term tests in Logan et al. (2008) <doi:10.1111/j.1541-0420.2007.00975.x>. Some commonly used descriptive statistics and plots are also included.
Author: Jingjing Lyu [aut],
Zheng Chen [cre],
Huimin Li [ctb],
Jinbao Chen [ctb],
Xinghui Huang [ctb]
Maintainer: Zheng Chen <zchen@smu.edu.cn>
Diff between ComparisonSurv versions 1.0.8 dated 2019-12-15 and 1.0.9 dated 2020-05-18
DESCRIPTION | 25 ++++++++++--------------- MD5 | 11 ++++++----- R/ComparisonSurv.R | 18 +++++++++--------- man/ComparisonSurv-package.Rd |only man/Fixpoint.test.Rd | 1 + man/Overall.test.Rd | 4 +++- man/crosspoint.Rd | 2 +- 7 files changed, 30 insertions(+), 31 deletions(-)
More information about ComparisonSurv at CRAN
Permanent link
Title: Bayesian Estimation Supersedes the t-Test
Description: An alternative to t-tests, producing posterior estimates
for group means and standard deviations and their differences and
effect sizes.
Author: John K. Kruschke and Mike Meredith
Maintainer: Mike Meredith <mike@mmeredith.net>
Diff between BEST versions 0.5.1 dated 2018-04-19 and 0.5.2 dated 2020-05-18
DESCRIPTION | 11 ++++++----- MD5 | 24 ++++++++++++------------ NEWS | 9 +++++++++ R/plotPost.R | 18 +++++++++--------- build/vignette.rds |binary inst/doc/BEST.Rnw | 2 +- inst/doc/BEST.pdf |binary inst/tests/testthat/test-BESTmcmc.R | 26 ++++++++++---------------- inst/tests/testthat/test-BESTmcmc_priors.R | 8 +++----- inst/tests/testthat/test-BESTpower.R | 14 +++++--------- inst/tests/testthat/test-summary.R | 8 ++++---- man/BEST-package.Rd | 18 ++++++++---------- vignettes/BEST.Rnw | 2 +- 13 files changed, 68 insertions(+), 72 deletions(-)
Title: Ridge-Type Penalized Estimation of a Potpourri of Models
Description: The name of the package is derived from the French, 'pour' ridge, and provides functionality for ridge-type estimation of a potpourri of models. Currently, this estimation concerns that of various Gaussian graphical models from different study designs. Among others it considers the regular Gaussian graphical model and a mixture of such models. The porridge-package implements the estimation of the former either from i) data with replicated observations by penalized loglikelihood maximization using the regular ridge penalty on the parameters (van Wieringen, Chen, 2019) or ii) from non-replicated data by means of the generalized ridge estimator that allows for both the inclusion of quantitative and qualitative prior information on the precision matrix via element-wise penalization and shrinkage (van Wieringen, 2019, <doi.org/10.1080/10618600.2019.1604374>). Additionally, the porridge-package facilitates the ridge penalized estimation of a mixture of Gaussian graphical models (Aflakparast et al., 2018, <doi.org/10.1002/bimj.201700102>).
Author: Wessel N. van Wieringen [aut, cre],
Mehran Aflakparast [ctb] (part of the R-code of the mixture
functionality)
Maintainer: Wessel N. van Wieringen <w.vanwieringen@vumc.nl>
Diff between porridge versions 0.0.4 dated 2019-12-16 and 0.1.0 dated 2020-05-18
porridge-0.0.4/porridge/R/ridgePgenAndCo.r |only porridge-0.1.0/porridge/DESCRIPTION | 8 porridge-0.1.0/porridge/MD5 | 40 porridge-0.1.0/porridge/NAMESPACE | 4 porridge-0.1.0/porridge/R/RcppExports.R | 16 porridge-0.1.0/porridge/R/porridge-package.R |only porridge-0.1.0/porridge/R/ridgeGGMmixtureAndCo.R | 13 porridge-0.1.0/porridge/R/ridgePgenAndCo.R |only porridge-0.1.0/porridge/R/ridgePmultitTandCo.R |only porridge-0.1.0/porridge/inst/NEWS.Rd | 8 porridge-0.1.0/porridge/inst/include/porridge_RcppExports.h | 252 - porridge-0.1.0/porridge/man/optPenaltyPgen.kCVauto.banded.Rd | 4 porridge-0.1.0/porridge/man/optPenaltyPgen.kCVauto.groups.Rd | 4 porridge-0.1.0/porridge/man/optPenaltyPmultiT.kCVauto.Rd |only porridge-0.1.0/porridge/man/porridge-package.Rd | 14 porridge-0.1.0/porridge/man/ridgePgen.Rd | 2 porridge-0.1.0/porridge/man/ridgePgen.kCV.Rd | 4 porridge-0.1.0/porridge/man/ridgePgen.kCV.banded.Rd | 4 porridge-0.1.0/porridge/man/ridgePgen.kCV.groups.Rd | 4 porridge-0.1.0/porridge/man/ridgePmultiT.Rd |only porridge-0.1.0/porridge/src/RcppExports.cpp | 449 - porridge-0.1.0/porridge/src/porridge.cpp | 2628 ----------- porridge-0.1.0/porridge/src/ridgeGGMmix.h |only porridge-0.1.0/porridge/src/ridgePgen.h |only porridge-0.1.0/porridge/src/ridgePmultiT.h |only porridge-0.1.0/porridge/src/ridgePrep.h |only 26 files changed, 163 insertions(+), 3291 deletions(-)
Title: Download, Compile and Link 'OpenBLAS' Library with R
Description: The 'ropenblas' package (<https://prdm0.github.io/ropenblas/>) is useful for users of any 'GNU/Linux' distribution. It will be possible to download, compile and link the 'OpenBLAS' library (<https://www.openblas.net/>) with the R language, always by the same procedure, regardless of the 'GNU/Linux' distribution used. With the 'ropenblas' package it is possible to download, compile and link the latest version of the 'OpenBLAS' library even the repositories of the 'GNU/Linux' distribution used do not include the latest versions of 'OpenBLAS'. If of interest, older versions of the 'OpenBLAS' library may be considered. Linking R with an optimized version of 'BLAS' (<http://www.netlib.org/blas/>) may improve the computational performance of R code. The 'OpenBLAS' library is an optimized implementation of 'BLAS' that can be easily linked to R with the 'ropenblas' package.
Author: Pedro Rafael D. Marinho [aut, cre]
Maintainer: Pedro Rafael D. Marinho <pedro.rafael.marinho@gmail.com>
Diff between ropenblas versions 0.2.4 dated 2020-04-23 and 0.2.5 dated 2020-05-18
DESCRIPTION | 8 MD5 | 21 - NAMESPACE | 14 NEWS.md | 16 R/globals.R |only R/ropenblas.R | 817 +++++++++++++++++++++++++------------------ README.md | 58 ++- man/last_version_openblas.Rd | 6 man/last_version_r.Rd | 12 man/link_again.Rd | 2 man/rcompiler.Rd | 48 +- man/ropenblas.Rd | 10 12 files changed, 605 insertions(+), 407 deletions(-)
Title: Recommender System using Matrix Factorization
Description: R wrapper of the 'libmf' library
<http://www.csie.ntu.edu.tw/~cjlin/libmf/> for recommender
system using matrix factorization. It is typically used to
approximate an incomplete matrix using the product of two
matrices in a latent space. Other common names for this task
include "collaborative filtering", "matrix completion",
"matrix recovery", etc. High performance multi-core parallel
computing is supported in this package.
Author: Yixuan Qiu, Chih-Jen Lin, Yu-Chin Juan, Wei-Sheng Chin,
Yong Zhuang, Bo-Wen Yuan, Meng-Yuan Yang, and other
contributors. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between recosystem versions 0.4.2 dated 2017-09-02 and 0.4.3 dated 2020-05-18
DESCRIPTION | 10 - MD5 | 34 ++-- R/DataSource.R | 2 R/Output.R | 2 R/RecoSys.R | 10 - build/vignette.rds |binary inst/NEWS.Rd | 13 + inst/doc/introduction.R | 2 inst/doc/introduction.html | 232 +++++++++++++++++++--------- man/Reco.Rd | 2 man/data_source.Rd | 2 man/output.Rd | 2 man/output_format.Rd | 2 man/predict.Rd | 2 man/train.Rd | 2 man/tune.Rd | 2 src/mf.cpp | 363 +++++++++++++++++++++++++-------------------- src/mf.h | 1 18 files changed, 411 insertions(+), 272 deletions(-)
Title: Simultaneous Generation of Multivariate Data with Poisson and
Normal Marginals
Description: Generates multivariate data with count and continuous variables with a pre-specified correlation matrix. The count and continuous variables are assumed to have Poisson and normal marginals, respectively. The data generation mechanism is a combination of the normal to anything principle and a connection between Poisson and normal correlations in the mixture.
The details of the method are explained in Yahav et al. (2012) <DOI:10.1002/asmb.901>.
Author: Anup Amatya, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between PoisNor versions 1.3.1 dated 2019-05-14 and 1.3.2 dated 2020-05-18
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- man/PoisNor-package.Rd | 4 ++-- 3 files changed, 10 insertions(+), 9 deletions(-)
Title: Iterative Max-Min Entropy Margin-Maximization with Interaction
Terms for Feature Selection
Description: Based on large margin principle, this package performs feature selection methods: "IM4E"(Iterative Margin-Maximization under Max-Min Entropy Algorithm); "Immigrate"(Iterative Max-Min Entropy Margin-Maximization with Interaction Terms Algorithm); "BIM"(Boosted version of IMMIGRATE algorithm); "Simba"(Iterative Search Margin Based Algorithm); "LFE"(Local Feature Extraction Algorithm). This package also performs prediction for the above feature selection methods.
Author: Ruzhang Zhao, Pengyu Hong, Jun S. Liu
Maintainer: Ruzhang Zhao<zrz6787@gmail.com>
Diff between Immigrate versions 0.0.2 dated 2019-01-21 and 0.1.1 dated 2020-05-18
Immigrate-0.0.2/Immigrate/R/imIM4E.R |only Immigrate-0.0.2/Immigrate/R/one.imIM4E.R |only Immigrate-0.0.2/Immigrate/man/imIM4E.Rd |only Immigrate-0.0.2/Immigrate/man/one.imIM4E.Rd |only Immigrate-0.0.2/Immigrate/src/BIMMACpp.cpp |only Immigrate-0.0.2/Immigrate/src/imIM4ECpp.cpp |only Immigrate-0.1.1/Immigrate/DESCRIPTION | 13 ++-- Immigrate-0.1.1/Immigrate/MD5 | 56 +++++++++------------ Immigrate-0.1.1/Immigrate/NAMESPACE | 2 Immigrate-0.1.1/Immigrate/R/RcppExports.R | 8 --- Immigrate-0.1.1/Immigrate/R/one.IM4E.R | 2 Immigrate-0.1.1/Immigrate/R/one.Immigrate.R | 3 - Immigrate-0.1.1/Immigrate/R/one.boost.Immigrate.R | 2 Immigrate-0.1.1/Immigrate/R/pred.values.R | 2 Immigrate-0.1.1/Immigrate/R/predict.BIM.R | 2 Immigrate-0.1.1/Immigrate/R/predict.IM4E.R | 2 Immigrate-0.1.1/Immigrate/R/predict.Immigrate.R | 2 Immigrate-0.1.1/Immigrate/R/predict.LFE.R | 2 Immigrate-0.1.1/Immigrate/README.md | 8 +-- Immigrate-0.1.1/Immigrate/data/datalist | 2 Immigrate-0.1.1/Immigrate/man/BIM.Rd | 11 +++- Immigrate-0.1.1/Immigrate/man/IM4E.Rd | 11 +++- Immigrate-0.1.1/Immigrate/man/Immigrate.Rd | 12 +++- Immigrate-0.1.1/Immigrate/man/park.Rd | 4 + Immigrate-0.1.1/Immigrate/man/pred.values.Rd | 3 - Immigrate-0.1.1/Immigrate/man/predict.BIM.Rd | 2 Immigrate-0.1.1/Immigrate/man/predict.IM4E.Rd | 5 - Immigrate-0.1.1/Immigrate/man/predict.Immigrate.Rd | 5 - Immigrate-0.1.1/Immigrate/man/predict.LFE.Rd | 2 Immigrate-0.1.1/Immigrate/src/IM4ECpp.cpp | 4 - Immigrate-0.1.1/Immigrate/src/ImmigrateCpp.cpp | 6 +- Immigrate-0.1.1/Immigrate/src/RcppExports.cpp | 40 --------------- 32 files changed, 88 insertions(+), 123 deletions(-)
Title: Functional Time Series Analysis
Description: Functions for visualizing, modeling, forecasting and hypothesis testing of functional time series.
Author: Rob Hyndman [aut] (<https://orcid.org/0000-0002-2140-5352>),
Han Lin Shang [aut, cre, cph] (<https://orcid.org/0000-0003-1769-6430>)
Maintainer: Han Lin Shang <hanlin.shang@anu.edu.au>
Diff between ftsa versions 5.6 dated 2020-04-23 and 5.7 dated 2020-05-18
ChangeLog | 6 ++++++ DESCRIPTION | 11 ++++++----- MD5 | 16 +++++++++++----- NAMESPACE | 10 ++++++++-- R/ER_GR.R |only R/stop_time_detect.R |only R/stop_time_sim_data.R |only inst/doc/ftsa.pdf |binary inst/doc/ftsa_test.pdf |binary man/ER_GR.Rd |only man/stop_time_detect.Rd |only man/stop_time_sim_data.Rd |only 12 files changed, 31 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-20 1.4