Title: Companion to Applied Regression Data Sets
Description: Datasets to Accompany J. Fox and S. Weisberg,
An R Companion to Applied Regression, Third Edition, Sage (2019).
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Brad Price [aut]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between carData versions 3.0-3 dated 2019-11-16 and 3.0-4 dated 2020-05-22
DESCRIPTION | 14 ++-- MD5 | 134 +++++++++++++++++++++++----------------------- NEWS | 6 ++ data/AMSsurvey.rda |binary data/Adler.rda |binary data/Angell.rda |binary data/Anscombe.rda |binary data/Arrests.rda |binary data/BEPS.rda |binary data/Baumann.rda |binary data/Bfox.rda |binary data/Blackmore.rda |binary data/Burt.rda |binary data/CES11.rda |binary data/CanPop.rda |binary data/Chile.rda |binary data/Chirot.rda |binary data/Cowles.rda |binary data/Davis.rda |binary data/DavisThin.rda |binary data/Depredations.rda |binary data/Duncan.rda |binary data/Ericksen.rda |binary data/Florida.rda |binary data/Freedman.rda |binary data/Friendly.rda |binary data/GSSvocab.rda |binary data/Ginzberg.rda |binary data/Greene.rda |binary data/Guyer.rda |binary data/Hartnagel.rda |binary data/Highway1.rda |binary data/KosteckiDillon.rda |binary data/Leinhardt.rda |binary data/LoBD.rda |binary data/Mandel.rda |binary data/Migration.rda |binary data/Moore.rda |binary data/MplsDemo.rda |binary data/MplsStops.rda |binary data/Mroz.rda |binary data/OBrienKaiser.rda |binary data/OBrienKaiserLong.rda |only data/Ornstein.rda |binary data/Pottery.rda |binary data/Prestige.rda |binary data/Quartet.rda |binary data/Robey.rda |binary data/Rossi.rda |binary data/SLID.rda |binary data/Sahlins.rda |binary data/Salaries.rda |binary data/Soils.rda |binary data/States.rda |binary data/TitanicSurvival.rda |binary data/Transact.rda |binary data/UN.rda |binary data/UN98.rda |binary data/USPop.rda |binary data/Vocab.rda |binary data/WVS.rda |binary data/WeightLoss.rda |binary data/Wells.rda |binary data/Womenlf.rda |binary data/Wong.rda |binary data/Wool.rda |binary data/datalist | 1 man/CES11.Rd | 4 - man/OBrienKaiserLong.Rd |only 69 files changed, 84 insertions(+), 75 deletions(-)
Title: Identify Sudden Gains in Longitudinal Data
Description: Identify sudden gains based on the three criteria outlined by Tang and DeRubeis (1999) <doi:10.1037/0022-006X.67.6.894> to a selection of repeated measures. Sudden losses, defined as the opposite of sudden gains can also be identified. Two different datasets can be created, one including all sudden gains/losses and one including one selected sudden gain/loss for each case. It can extract scores around sudden gains/losses. It can plot the average change around sudden gains/losses and trajectories of individual cases.
Author: Milan Wiedemann [aut, cre] (<https://orcid.org/0000-0003-1991-282X>),
Graham M Thew [ctb] (<https://orcid.org/0000-0003-2851-1315>),
Richard Stott [ctb] (<https://orcid.org/0000-0003-2533-5504>),
Anke Ehlers [ctb, ths] (<https://orcid.org/0000-0002-8742-0192>),
Mental Health Research UK [fnd],
Wellcome Trust [fnd]
Maintainer: Milan Wiedemann <milan.wiedemann@gmail.com>
Diff between suddengains versions 0.4.3 dated 2020-03-14 and 0.4.4 dated 2020-05-22
suddengains-0.4.3/suddengains/R/sgdata_bad.R |only suddengains-0.4.4/suddengains/DESCRIPTION | 13 suddengains-0.4.4/suddengains/MD5 | 44 + suddengains-0.4.4/suddengains/NAMESPACE | 2 suddengains-0.4.4/suddengains/NEWS.md | 10 suddengains-0.4.4/suddengains/R/create_bysg.R | 6 suddengains-0.4.4/suddengains/R/describe_sg.R | 19 suddengains-0.4.4/suddengains/R/extract_values.R | 7 suddengains-0.4.4/suddengains/R/identify_sg.R | 4 suddengains-0.4.4/suddengains/R/identify_sl.R | 4 suddengains-0.4.4/suddengains/R/plot_sg_intervals.R |only suddengains-0.4.4/suddengains/R/select_cases.R | 2 suddengains-0.4.4/suddengains/R/sgdata.R | 48 ++ suddengains-0.4.4/suddengains/R/suddengains.R | 7 suddengains-0.4.4/suddengains/build/vignette.rds |binary suddengains-0.4.4/suddengains/inst/doc/shinygains.Rmd |only suddengains-0.4.4/suddengains/inst/doc/shinygains.html |only suddengains-0.4.4/suddengains/inst/doc/suddengains-tutorial.R | 7 suddengains-0.4.4/suddengains/inst/doc/suddengains-tutorial.Rmd | 10 suddengains-0.4.4/suddengains/inst/doc/suddengains-tutorial.html | 230 +++++----- suddengains-0.4.4/suddengains/man/describe_sg.Rd | 19 suddengains-0.4.4/suddengains/man/plot_sg_intervals.Rd |only suddengains-0.4.4/suddengains/man/sgdata.Rd | 6 suddengains-0.4.4/suddengains/man/sgdata_bad.Rd | 8 suddengains-0.4.4/suddengains/vignettes/shinygains.Rmd |only suddengains-0.4.4/suddengains/vignettes/suddengains-tutorial.Rmd | 10 26 files changed, 264 insertions(+), 192 deletions(-)
Title: Longitudinal Concordance Correlation
Description: Estimates the longitudinal concordance correlation to access the longitudinal agreement profile. The estimation approach implemented is variance components approach based on polynomial mixed effects regression model, as proposed by Oliveira, Hinde and Zocchi (2018) <doi:10.1007/s13253-018-0321-1>. In addition, non-parametric confidence intervals were implemented using percentile method or normal-approximation based on Fisher Z-transformation.
Author: Thiago de Paula Oliveira [aut, cre],
Rafael de Andrade Moral [aut],
Silvio Sandoval Zocchi [ctb],
Clarice Garcia Borges Demetrio [ctb],
John Hinde [aut]
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@usp.br>
Diff between lcc versions 1.0.5 dated 2020-05-18 and 1.1.0 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 5 ++++- R/lcc.R | 6 +++--- R/lccBootstrap.R | 44 +++++++++++++++++++++----------------------- man/lcc.Rd | 6 +++--- 6 files changed, 40 insertions(+), 39 deletions(-)
Title: Iterative Max-Min Entropy Margin-Maximization with Interaction
Terms for Feature Selection
Description: Based on large margin principle, this package performs feature selection methods: "IM4E"(Iterative Margin-Maximization under Max-Min Entropy Algorithm); "Immigrate"(Iterative Max-Min Entropy Margin-Maximization with Interaction Terms Algorithm); "BIM"(Boosted version of IMMIGRATE algorithm); "Simba"(Iterative Search Margin Based Algorithm); "LFE"(Local Feature Extraction Algorithm). This package also performs prediction for the above feature selection methods.
Author: Ruzhang Zhao, Pengyu Hong, Jun S. Liu
Maintainer: Ruzhang Zhao<ruzhangzhao@gmail.com>
Diff between Immigrate versions 0.1.1 dated 2020-05-18 and 0.2.1 dated 2020-05-22
DESCRIPTION | 11 +- MD5 | 40 +++++----- R/BIM.R | 14 ++- R/IM4E.R | 9 +- R/Immigrate.R | 24 +++--- R/one.IM4E.R | 6 - R/one.Immigrate.R | 4 - R/predict.BIM.R | 14 ++- R/predict.IM4E.R | 14 ++- R/predict.Immigrate.R | 17 ++-- R/predict.LFE.R | 9 +- README.md | 187 ++++++++++++++++++++++++++++++++++++++++++++--- man/BIM.Rd | 15 ++- man/IM4E.Rd | 6 - man/Immigrate.Rd | 20 +++-- man/one.IM4E.Rd | 6 - man/one.Immigrate.Rd | 6 + man/predict.BIM.Rd | 22 ++++- man/predict.IM4E.Rd | 19 +++- man/predict.Immigrate.Rd | 24 ++++-- man/predict.LFE.Rd | 16 +++- 21 files changed, 359 insertions(+), 124 deletions(-)
Title: Income Concentration Analysis with Complex Survey Samples
Description: Variance estimation on indicators of income concentration and
poverty using complex sample survey designs. Wrapper around the
'survey' package.
Author: Djalma Pessoa [aut, cre],
Anthony Damico [aut],
Guilherme Jacob [aut]
Maintainer: Djalma Pessoa <pessoad@gmail.com>
Diff between convey versions 0.2.1 dated 2018-06-19 and 0.2.2 dated 2020-05-22
DESCRIPTION | 14 MD5 | 226 ++--- NAMESPACE | 313 +++---- R/all_funs.R | 819 +++++++++--------- R/contrastinf.R | 174 +-- R/survey_functions.R | 362 ++++---- R/svyafc.R | 841 +++++++++--------- R/svyafcdec.R | 1203 +++++++++++++-------------- R/svyamato.R | 523 +++++------ R/svyarpr.R | 542 ++++++------ R/svyarpt.R | 464 +++++----- R/svyatk.R | 666 +++++++------- R/svybcc.R | 666 +++++++------- R/svybmi.R | 840 +++++++++--------- R/svychu.R |only R/svyfgt.R | 736 ++++++++-------- R/svyfgtdec.R |only R/svygei.R | 630 ++++++-------- R/svygeidec.R | 1025 +++++++++++------------ R/svygini.R | 472 +++++----- R/svygpg.R | 500 +++++------ R/svyiqalpha.R | 416 ++++----- R/svyisq.R | 428 ++++----- R/svyjdiv.R | 475 +++++----- R/svyjdivdec.R | 825 ++++++++---------- R/svylorenz.R | 1133 ++++++++++++------------- R/svypoormed.R | 600 ++++++------- R/svyqsr.R | 510 +++++------ R/svyrenyi.R | 541 +++++------- R/svyrich.R |only R/svyrmir.R | 556 ++++++------ R/svyrmpg.R | 530 +++++------ R/svysen.R | 726 ++++++++-------- R/svysst.R | 756 ++++++++-------- R/svywatts.R |only R/svywattsdec.R |only R/svyzenga.R | 569 ++++++------ R/svyzengacurve.R | 1071 +++++++++++------------- README.md | 10 man/contrastinf.Rd | 172 +-- man/convey_prep.Rd | 108 +- man/densfun.Rd | 90 +- man/h_fun.Rd | 46 - man/icdf.Rd | 104 +- man/svyafc.Rd | 284 +++--- man/svyafcdec.Rd | 380 ++++---- man/svyamato.Rd | 256 ++--- man/svyarpr.Rd | 224 ++--- man/svyarpt.Rd | 224 ++--- man/svyatk.Rd | 302 +++--- man/svybcc.Rd | 304 +++--- man/svybmi.Rd | 270 +++--- man/svychu.Rd |only man/svyfgt.Rd | 325 +++---- man/svyfgtdec.Rd |only man/svygei.Rd | 292 +++--- man/svygeidec.Rd | 286 +++--- man/svygini.Rd | 212 ++-- man/svygpg.Rd | 178 +-- man/svyiqalpha.Rd | 216 ++-- man/svyisq.Rd | 218 ++-- man/svyjdiv.Rd | 222 ++-- man/svyjdivdec.Rd | 258 ++--- man/svylorenz.Rd | 306 +++--- man/svypoormed.Rd | 224 ++--- man/svyqsr.Rd | 264 +++-- man/svyrenyi.Rd | 226 ++--- man/svyrich.Rd |only man/svyrmir.Rd | 266 +++-- man/svyrmpg.Rd | 252 ++--- man/svysen.Rd | 230 ++--- man/svysst.Rd | 246 ++--- man/svywatts.Rd |only man/svywattsdec.Rd |only man/svyzenga.Rd | 246 ++--- man/svyzengacurve.Rd | 318 +++---- tests/testthat.R | 16 tests/testthat/Rplots.pdf |only tests/testthat/test-densfun.R | 30 tests/testthat/test-extract_renyi-pos.R | 376 ++++---- tests/testthat/test-extract_svyafc.R | 371 ++++---- tests/testthat/test-extract_svyafcdec.R | 462 +++++----- tests/testthat/test-extract_svyamato-pos.R | 366 ++++---- tests/testthat/test-extract_svyarpr.R | 341 +++---- tests/testthat/test-extract_svyarpt.R | 344 +++---- tests/testthat/test-extract_svyatk-pos.R | 370 ++++---- tests/testthat/test-extract_svybcc.R | 329 +++---- tests/testthat/test-extract_svybmi.R | 324 +++---- tests/testthat/test-extract_svychu.R |only tests/testthat/test-extract_svyfgt.R | 327 +++---- tests/testthat/test-extract_svyfgtdec.R |only tests/testthat/test-extract_svygei-pos.R | 368 ++++---- tests/testthat/test-extract_svygeidec-pos.R | 387 +++++--- tests/testthat/test-extract_svygini.R | 354 +++---- tests/testthat/test-extract_svygpg.R | 324 +++---- tests/testthat/test-extract_svyiqalpha.R | 364 ++++---- tests/testthat/test-extract_svyisq.R | 358 ++++---- tests/testthat/test-extract_svyjdiv-pos.R | 341 +++---- tests/testthat/test-extract_svyjdivdec-pos.R | 383 +++++--- tests/testthat/test-extract_svylorenz.R | 320 +++---- tests/testthat/test-extract_svypoormed.R | 360 ++++---- tests/testthat/test-extract_svyqsr.R | 346 +++---- tests/testthat/test-extract_svyrich.R |only tests/testthat/test-extract_svyrmir.R | 356 ++++--- tests/testthat/test-extract_svyrmpg.R | 348 +++---- tests/testthat/test-extract_svysen.R | 310 +++--- tests/testthat/test-extract_svysst.R | 301 +++--- tests/testthat/test-extract_svywatts.R |only tests/testthat/test-extract_svywattsdec.R |only tests/testthat/test-extract_svyzenga-pos.R | 364 ++++---- tests/testthat/test-extract_svyzengacurve.R | 348 +++---- tests/testthat/test-icdf.R | 42 tests/testthat/test-matrix.R | 415 ++++----- tests/testthat/test-skewed_distributions.R | 395 ++++---- tests/testthat/test-svyarpr.R | 109 +- tests/testthat/test-svyarpt.R | 95 +- tests/testthat/test-svyatk.R | 59 - tests/testthat/test-svygini.R | 97 +- tests/testthat/test-svypoormed.R | 102 +- tests/testthat/test-svyqsr.R | 97 +- tests/testthat/test-svyrmir.R | 101 +- tests/testthat/test-svyrmpg.R | 106 +- 122 files changed, 19518 insertions(+), 19399 deletions(-)
Title: A Graphical EDA Tool
Description: An automated graphical exploratory data analysis (EDA) tool that introduces:
a.) wideplot() graphics for exploring the structure of a dataset through a grid of variables
and graphic types.
b.) longplot() graphics, which present the entire catalog of available graphics for representing
a particular variable using a grid of graphic types and variations on these types.
c.) plotup() function, which presents a particular graphic for a specific variable of a dataset.
The plotup() function also makes it possible to obtain the code used to generate the graphic,
meaning that the user can adjust its properties as needed.
Author: Pere Millán-Martínez [aut, cre],
Ramon Oller Piqué [ctb]
Maintainer: Pere Millán-Martínez <info@sciencegraph.org>
Diff between brinton versions 0.1.6 dated 2020-04-15 and 0.1.7 dated 2020-05-22
DESCRIPTION | 6 MD5 | 41 ++-- R/40_outputs.R | 24 ++ R/50_longplot.R | 64 ++++--- R/70_plotup.R | 67 ++++++- README.md | 2 inst/doc/brinton.html | 4 inst/doc/specimen.R | 299 +--------------------------------- inst/doc/specimen.Rmd | 302 +---------------------------------- inst/doc/specimen.html | 42 ++-- man/figures/README-plotspane1-1.png |binary vignettes/figures/character_02-1.png |binary vignettes/figures/character_04-1.png |binary vignettes/figures/fac-num_03-1.png |binary vignettes/figures/fac-num_04-1.png |binary vignettes/figures/fac-num_05-1.png |binary vignettes/figures/fac-num_08-1.png |only vignettes/figures/factor_02-1.png |binary vignettes/figures/factor_04-1.png |binary vignettes/figures/numeric_03-1.png |binary vignettes/figures/numeric_05-1.png |binary vignettes/specimen.Rmd | 302 +---------------------------------- 22 files changed, 213 insertions(+), 940 deletions(-)
Title: Tool for the U.S. SEC EDGAR Retrieval and Parsing of Corporate
Filings
Description: In the USA, companies file different forms with the U.S.
Securities and Exchange Commission (SEC) through EDGAR (Electronic
Data Gathering, Analysis, and Retrieval system). The EDGAR
database automated system collects all the different necessary
filings and makes it publicly available. This package facilitates
retrieving, storing, searching, and parsing of all the available
filings on the EDGAR server. It downloads filings from SEC
server in bulk with a single query. Additionally, it provides
various useful functions: extracts 8-K triggering events, extract
"Business (Item 1)" and "Management's Discussion and Analysis(Item 7)"
sections of annual statements, searches filings for desired
keywords, provides sentiment measures, parses filing header
information, and provides HTML view of SEC filings.
Author: Gunratan Lonare <lonare.gunratan@gmail.com>, Bharat Patil
<bharatspatil@gmail.com>
Maintainer: Gunratan Lonare <lonare.gunratan@gmail.com>
Diff between edgar versions 2.0.2 dated 2019-08-29 and 2.0.3 dated 2020-05-22
DESCRIPTION | 38 +++--- MD5 | 46 +++---- NAMESPACE | 2 R/get8KItems.R | 24 ++-- R/getBusinessDescr.R | 55 ++++----- R/getDailyMaster.R | 9 + R/getFilingHeader.R | 12 +- R/getFilings.R | 9 + R/getFilingsHTML.R | 27 ++-- R/getMasterIndex.R | 2 R/getMgmtDisc.R | 43 +++---- R/getSentiment.R | 106 ++++++++++++------ R/searchFilings.R | 285 ++++++++++++++++++++++++++++++++----------------- man/get8KItems.Rd | 12 +- man/getBusinDescr.Rd | 28 ++-- man/getDailyMaster.Rd | 4 man/getFilingHeader.Rd | 12 +- man/getFilingInfo.Rd | 96 ++++++++-------- man/getFilings.Rd | 106 +++++++++--------- man/getFilingsHTML.Rd | 10 - man/getMasterIndex.Rd | 2 man/getMgmtDisc.Rd | 97 ++++++++-------- man/getSentiment.Rd | 60 ++++++---- man/searchFilings.Rd | 31 ++--- 24 files changed, 635 insertions(+), 481 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<http://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Beilei Bian [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
JJ Allaire [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Xianying Tan [ctb],
Raniere Silva [ctb],
Jozef Hajnala [ctb],
RStudio, PBC [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 0.18 dated 2020-03-04 and 0.19 dated 2020-05-22
DESCRIPTION | 8 +++---- MD5 | 25 ++++++++++++----------- NAMESPACE | 2 + NEWS.md | 18 ++++++++++++++++ R/addin.R | 24 +++++++--------------- R/hugo.R | 50 ++++++++++++++++++++++++++++++++++++++--------- R/install.R | 2 - R/render.R | 7 +++++- R/utils.R | 11 +++++++--- inst/rstudio/addins.dcf | 2 - inst/scripts/new_post.R | 16 ++++++++------- man/build_site.Rd | 4 ++- man/shortcode.Rd | 23 +++++++++++++++++++-- tests/testit/test-list.R |only 14 files changed, 135 insertions(+), 57 deletions(-)
Title: Interface to 'TensorFlow' Hub
Description: 'TensorFlow' Hub is a library for the publication, discovery, and
consumption of reusable parts of machine learning models. A module is a
self-contained piece of a 'TensorFlow' graph, along with its weights and
assets, that can be reused across different tasks in a process known as
transfer learning. Transfer learning train a model with a smaller dataset,
improve generalization, and speed up training.
Author: Daniel Falbel [aut, cre],
JJ Allaire [aut],
RStudio [cph, fnd],
Google Inc. [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between tfhub versions 0.7.0 dated 2019-12-18 and 0.8.0 dated 2020-05-22
DESCRIPTION | 12 +- MD5 | 20 ++-- R/layer.R | 25 ++++- inst/doc/hub-with-keras.R | 32 +++---- inst/doc/hub-with-keras.html | 175 +++++++++++++++++++++------------------- inst/doc/intro.Rmd | 2 inst/doc/intro.html | 127 +++++++++++++++-------------- inst/doc/key-concepts.R | 16 +-- inst/doc/key-concepts.html | 129 ++++++++++++++++------------- tests/testthat/test-layer-hub.R | 2 vignettes/intro.Rmd | 2 11 files changed, 295 insertions(+), 247 deletions(-)
Title: Download 'Qualtrics' Survey Data
Description: Provides functions to access survey results directly into R using
the 'Qualtrics' API. 'Qualtrics' <https://www.qualtrics.com/about/> is an
online survey and data collection software platform. See
<https://api.qualtrics.com/> for more information about the 'Qualtrics' API.
This package is community-maintained and is not officially supported by
'Qualtrics'.
Author: Jasper Ginn [aut],
Jackson Curtis [ctb],
Shaun Jackson [ctb],
Samuel Kaminsky [ctb],
Eric Knudsen [ctb],
Joseph O'Brien [ctb],
Daniel Seneca [ctb],
Julia Silge [aut, cre] (<https://orcid.org/0000-0002-3671-836X>),
Phoebe Wong [ctb]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between qualtRics versions 3.1.2 dated 2020-02-24 and 3.1.3 dated 2020-05-22
qualtRics-3.1.2/qualtRics/tests/testthat/files/file_fetch_survey.rds |only qualtRics-3.1.2/qualtRics/tests/testthat/t.qualtrics.com |only qualtRics-3.1.3/qualtRics/DESCRIPTION | 31 + qualtRics-3.1.3/qualtRics/MD5 | 66 ++-- qualtRics-3.1.3/qualtRics/NAMESPACE | 5 qualtRics-3.1.3/qualtRics/NEWS.md | 8 qualtRics-3.1.3/qualtRics/R/all_mailinglists.R |only qualtRics-3.1.3/qualtRics/R/all_surveys.R | 10 qualtRics-3.1.3/qualtRics/R/deprecated.R | 75 +--- qualtRics-3.1.3/qualtRics/R/fetch_mailinglist.R |only qualtRics-3.1.3/qualtRics/R/fetch_survey.R | 24 + qualtRics-3.1.3/qualtRics/R/read_survey.R | 19 - qualtRics-3.1.3/qualtRics/R/utils.R | 157 ++++------ qualtRics-3.1.3/qualtRics/build/vignette.rds |binary qualtRics-3.1.3/qualtRics/inst/doc/qualtRics.html | 4 qualtRics-3.1.3/qualtRics/man/all_mailinglists.Rd |only qualtRics-3.1.3/qualtRics/man/fetch_mailinglist.Rd |only qualtRics-3.1.3/qualtRics/man/fetch_survey.Rd | 15 qualtRics-3.1.3/qualtRics/man/getSurveys.Rd | 4 qualtRics-3.1.3/qualtRics/man/qualtRicsConfigFile.Rd | 30 - qualtRics-3.1.3/qualtRics/man/read_survey.Rd | 12 qualtRics-3.1.3/qualtRics/tests/fixtures |only qualtRics-3.1.3/qualtRics/tests/testthat.R | 1 qualtRics-3.1.3/qualtRics/tests/testthat/helper-qualtRics.R |only qualtRics-3.1.3/qualtRics/tests/testthat/test-all-mailinglists.R |only qualtRics-3.1.3/qualtRics/tests/testthat/test-all-surveys.R | 39 +- qualtRics-3.1.3/qualtRics/tests/testthat/test-check-params.R | 121 ++++++- qualtRics-3.1.3/qualtRics/tests/testthat/test-column_map.R |only qualtRics-3.1.3/qualtRics/tests/testthat/test-download-qualtrics-export.R |only qualtRics-3.1.3/qualtRics/tests/testthat/test-fetch-mailinglist.R |only qualtRics-3.1.3/qualtRics/tests/testthat/test-fetch-survey.R | 95 +++++- qualtRics-3.1.3/qualtRics/tests/testthat/test-metadata.R |only qualtRics-3.1.3/qualtRics/tests/testthat/test-qualtrics-api-request.R |only qualtRics-3.1.3/qualtRics/tests/testthat/test-read-survey.R | 32 +- qualtRics-3.1.3/qualtRics/tests/testthat/test-survey-questions.R | 46 +- 35 files changed, 465 insertions(+), 329 deletions(-)
Title: River Network Distance Computation and Applications
Description: Reads river network shape files and computes network distances.
Also included are a variety of computation and graphical tools designed
for fisheries telemetry research, such as minimum home range, kernel density
estimation, and clustering analysis using empirical k-functions with
a bootstrap envelope. Tools are also provided for editing the river
networks, meaning there is no reliance on external software.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matt.tyers@alaska.gov>
Diff between riverdist versions 0.15.0 dated 2017-07-18 and 0.15.1 dated 2020-05-22
riverdist-0.15.0/riverdist/data/datalist |only riverdist-0.15.1/riverdist/DESCRIPTION | 10 riverdist-0.15.1/riverdist/MD5 | 183 +- riverdist-0.15.1/riverdist/NEWS.md | 4 riverdist-0.15.1/riverdist/R/riverdist_1.R | 38 riverdist-0.15.1/riverdist/README.md | 1 riverdist-0.15.1/riverdist/build/vignette.rds |binary riverdist-0.15.1/riverdist/inst/doc/riverdist_vignette.R | 86 - riverdist-0.15.1/riverdist/inst/doc/riverdist_vignette.html | 808 +++++++----- riverdist-0.15.1/riverdist/man/Gulk.Rd | 5 riverdist-0.15.1/riverdist/man/Kenai1.Rd | 5 riverdist-0.15.1/riverdist/man/Kenai2.Rd | 5 riverdist-0.15.1/riverdist/man/Kenai3.Rd | 5 riverdist-0.15.1/riverdist/man/KilleyW.Rd | 5 riverdist-0.15.1/riverdist/man/Koyukuk0.Rd | 5 riverdist-0.15.1/riverdist/man/Koyukuk1.Rd | 5 riverdist-0.15.1/riverdist/man/Koyukuk2.Rd | 5 riverdist-0.15.1/riverdist/man/abstreams.Rd | 5 riverdist-0.15.1/riverdist/man/abstreams0.Rd | 5 riverdist-0.15.1/riverdist/man/addcumuldist.Rd | 1 riverdist-0.15.1/riverdist/man/addverts.Rd | 7 riverdist-0.15.1/riverdist/man/buildlookup.Rd | 1 riverdist-0.15.1/riverdist/man/buildsegroutes.Rd | 1 riverdist-0.15.1/riverdist/man/calculateconnections.Rd | 1 riverdist-0.15.1/riverdist/man/checkbraided.Rd | 1 riverdist-0.15.1/riverdist/man/checkbraidedTF.Rd | 1 riverdist-0.15.1/riverdist/man/cleanup.Rd | 7 riverdist-0.15.1/riverdist/man/cleanup_verts.Rd | 7 riverdist-0.15.1/riverdist/man/connectsegs.Rd | 16 riverdist-0.15.1/riverdist/man/detectroute.Rd | 11 riverdist-0.15.1/riverdist/man/dissolve.Rd | 7 riverdist-0.15.1/riverdist/man/fakefish.Rd | 5 riverdist-0.15.1/riverdist/man/fakefish_density.Rd | 5 riverdist-0.15.1/riverdist/man/highlightseg.Rd | 4 riverdist-0.15.1/riverdist/man/homerange-class.Rd | 2 riverdist-0.15.1/riverdist/man/homerange.Rd | 20 riverdist-0.15.1/riverdist/man/homerangeoverlap.Rd | 7 riverdist-0.15.1/riverdist/man/isflowconnected.Rd | 1 riverdist-0.15.1/riverdist/man/kfunc.Rd | 23 riverdist-0.15.1/riverdist/man/line2network.Rd | 25 riverdist-0.15.1/riverdist/man/line98.Rd | 5 riverdist-0.15.1/riverdist/man/makeriverdensity.Rd | 18 riverdist-0.15.1/riverdist/man/mapbyname.Rd | 1 riverdist-0.15.1/riverdist/man/matbysurveylist.Rd | 23 riverdist-0.15.1/riverdist/man/mouthdist.Rd | 1 riverdist-0.15.1/riverdist/man/mouthdistbysurvey.Rd | 19 riverdist-0.15.1/riverdist/man/pdist.Rd | 1 riverdist-0.15.1/riverdist/man/pdisttot.Rd | 1 riverdist-0.15.1/riverdist/man/plot.homerange.Rd | 20 riverdist-0.15.1/riverdist/man/plot.riverdensity.Rd | 35 riverdist-0.15.1/riverdist/man/plot.rivernetwork.Rd | 20 riverdist-0.15.1/riverdist/man/plothomerangeoverlap.Rd | 7 riverdist-0.15.1/riverdist/man/plotmatbysurveylist.Rd | 7 riverdist-0.15.1/riverdist/man/plotriverdensitypoints.Rd | 7 riverdist-0.15.1/riverdist/man/plotseq.Rd | 17 riverdist-0.15.1/riverdist/man/pointshp2segvert.Rd | 1 riverdist-0.15.1/riverdist/man/removeduplicates.Rd | 7 riverdist-0.15.1/riverdist/man/removemicrosegs.Rd | 7 riverdist-0.15.1/riverdist/man/removeunconnected.Rd | 1 riverdist-0.15.1/riverdist/man/riverdensity.Rd | 2 riverdist-0.15.1/riverdist/man/riverdirection.Rd | 19 riverdist-0.15.1/riverdist/man/riverdirectionmat.Rd | 19 riverdist-0.15.1/riverdist/man/riverdirectionmatbysurvey.Rd | 22 riverdist-0.15.1/riverdist/man/riverdirectionseq.Rd | 20 riverdist-0.15.1/riverdist/man/riverdirectiontofrom.Rd | 24 riverdist-0.15.1/riverdist/man/riverdist-package.Rd | 4 riverdist-0.15.1/riverdist/man/riverdistance.Rd | 16 riverdist-0.15.1/riverdist/man/riverdistancelist.Rd | 1 riverdist-0.15.1/riverdist/man/riverdistancemat.Rd | 18 riverdist-0.15.1/riverdist/man/riverdistancematbysurvey.Rd | 20 riverdist-0.15.1/riverdist/man/riverdistanceseq.Rd | 19 riverdist-0.15.1/riverdist/man/riverdistancetofrom.Rd | 23 riverdist-0.15.1/riverdist/man/rivernetwork.Rd | 2 riverdist-0.15.1/riverdist/man/riverpoints.Rd | 1 riverdist-0.15.1/riverdist/man/routelist.Rd | 1 riverdist-0.15.1/riverdist/man/sequenceverts.Rd | 7 riverdist-0.15.1/riverdist/man/setmouth.Rd | 7 riverdist-0.15.1/riverdist/man/showends.Rd | 1 riverdist-0.15.1/riverdist/man/smallset.Rd | 5 riverdist-0.15.1/riverdist/man/splitsegmentat.Rd | 7 riverdist-0.15.1/riverdist/man/splitsegments.Rd | 17 riverdist-0.15.1/riverdist/man/topologydots.Rd | 7 riverdist-0.15.1/riverdist/man/trimriver.Rd | 7 riverdist-0.15.1/riverdist/man/trimtopoints.Rd | 7 riverdist-0.15.1/riverdist/man/upstream.Rd | 20 riverdist-0.15.1/riverdist/man/upstreammat.Rd | 21 riverdist-0.15.1/riverdist/man/upstreammatbysurvey.Rd | 23 riverdist-0.15.1/riverdist/man/upstreamseq.Rd | 22 riverdist-0.15.1/riverdist/man/upstreamtofrom.Rd | 25 riverdist-0.15.1/riverdist/man/whoconnected.Rd | 1 riverdist-0.15.1/riverdist/man/xy2segvert.Rd | 3 riverdist-0.15.1/riverdist/man/zoomtoseg.Rd | 1 riverdist-0.15.1/riverdist/tests/testthat/test_riverdist.R | 6 93 files changed, 1201 insertions(+), 728 deletions(-)
Title: Curculionidae INstar IDentification
Description: Method for identifying the instar of Curculionid larvae from the observed distribution of the headcapsule size of mature larvae.
Author: Aurelie Siberchicot, Adrien Merville, Marie-Claude Bel-Venner and Samuel Venner
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between CINID versions 1.2 dated 2014-10-07 and 1.3-0 dated 2020-05-22
DESCRIPTION | 9 ++++----- MD5 | 5 +++-- README.md |only man/cinid-package.Rd | 11 ----------- 4 files changed, 7 insertions(+), 18 deletions(-)
Title: Catalogue of Life Toolkit
Description: A programmatic interface to <http://sp2000.org.cn>, re-written based on an accompanying 'Species 2000' API. Access tables describing catalogue of the Chinese known species of animals, plants, fungi, micro-organisms, and more. This package also supports access to catalogue of life global <http://catalogueoflife.org> and catalogue of life Taiwan <http://taibnet.sinica.edu.tw/home_eng.php?>. The development of 'SP2000' package were supported by Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China and Yunnan University's Research Innovation Fund for Graduate Students.
Author: Liuyong Ding [aut, cre],
Minrui Huang [ctb],
Ke Yang [ctb],
Jun Wang [ctb],
Juan Tao [ctb],
Chengzhi Ding [ctb],
Daming He [ctb]
Maintainer: Liuyong Ding <ly_ding@126.com>
Diff between SP2000 versions 0.0.6 dated 2020-05-14 and 0.0.7 dated 2020-05-22
DESCRIPTION | 12 ++++++------ MD5 | 12 +++++++----- NAMESPACE | 5 +++++ NEWS | 5 +++++ R/download_CoLChina.R | 39 +++++++++++++++++++++++---------------- R/get_RedlistChina.R |only man/download_CoLChina.Rd | 19 ++++++------------- man/get_RedlistChina.Rd |only 8 files changed, 52 insertions(+), 40 deletions(-)
Title: Manage, Analyse and Simulate Hyperspectral Data
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut] (<https://orcid.org/0000-0002-5229-2282>),
Hanna Meyer [ctb],
Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>
Diff between hsdar versions 1.0.1 dated 2020-02-05 and 1.0.2 dated 2020-05-22
ChangeLog | 4 + DESCRIPTION | 10 +-- MD5 | 26 ++++---- R/distMat3D_methods.R | 19 +++++- R/hsdardocs.R | 44 +++++++++++++ R/speclib_apply.R | 148 ++++++++++++++++++++++++++--------------------- build/hsdar.pdf |binary build/vignette.rds |binary inst/doc/Hsdar-intro.R | 1 inst/doc/Hsdar-intro.pdf |binary inst/doc/References.pdf |binary man/applyDistMat3D.Rd | 8 +- man/applySpeclib.Rd | 7 +- man/plot.speclib.Rd | 6 - 14 files changed, 179 insertions(+), 94 deletions(-)
Title: Bayesian Network Structure Learning from Data with Missing
Values
Description: Bayesian Network Structure Learning from Data with Missing Values.
The package implements the Silander-Myllymaki complete search,
the Max-Min Parents-and-Children, the Hill-Climbing, the
Max-Min Hill-climbing heuristic searches, and the Structural
Expectation-Maximization algorithm. Available scoring functions are
BDeu, AIC, BIC. The package also implements methods for generating and using
bootstrap samples, imputed data, inference.
Author: Francesco Sambo [aut],
Alberto Franzin [aut, cre]
Maintainer: Alberto Franzin <afranzin@ulb.ac.be>
Diff between bnstruct versions 1.0.7 dated 2020-05-09 and 1.0.8 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NEWS.md | 7 ++++++- R/BN-methods.R | 9 ++++++++- R/beliefPropagation-methods.R | 30 ++++++++++++------------------ R/learn-methods.R | 6 +++--- R/sm.R | 17 +++++++++-------- inst/doc/bnstruct.pdf |binary tests/testthat/test_em.R |only tests/testthat/test_em_contdata.R |only 10 files changed, 51 insertions(+), 42 deletions(-)
Title: Subroutines to Estimate Rolling Window Multiple Correlation
Description: Rolling Window Multiple Correlation ('RolWinMulCor') estimates the rolling (running) window correlation for the bi- and multi-variate cases between regular (sampled on identical time points) time series, with especial emphasis to environmental data (although this can be applied to other kinds of data sets). 'RolWinMulCor' is based on the concept of rolling or running window and is useful to evaluate the evolution of correlation through time and time-scales. 'RolWinMulCor' contains four functions: (1) the first two functions are focus on the bi-variate case, one of them produces a simple plot of correlation coefficients and p-values (<=0.05) for only one window-length (time-scale), and the other function produces a heat map for the statistically significant (p-values <=0.05) correlation coefficients taking into account all the possible window-lengths (which are determined by the number of elements of the time series under analysis) or for a band of window-lengths; (2) the second two functions are designed to analyse the multi-variate case and follow the bi-variate case to display visually the results although these two methods are different. The four functions contained in 'RolWinMulCor' are highly flexible since this contains a great number of parameters to control the estimation of correlation and the features of the plot output, e.g. to remove the (linear) trend contained in the time series under analysis, to choose different p-value correction methods (which are used to address the multiple comparison problem) or to personalise the plot output (e.g. this can be displayed in the screen or can be saved as PNG, JPEG, EPS or PDF formats). The 'RolWinMulCor' package also provides examples with synthetic and real environmental time series to exemplify its use. Methods derived from H. Abdi. (2007) <https://personal.utdallas.edu/~herve/Abdi-MCC2007-pretty.pdf>, J. M. Polanco-Martinez (2019) <doi:10.1007/s11071-019-04974-y>, and R. Telford (2013) <https://quantpalaeo.wordpress.com/2013/01/04/running-correlations-running-into-problems/>.
Author: Josue M. Polanco-Martinez [aut, cph, cre]
Maintainer: Josue M. Polanco-Martinez <josue.m.polanco@gmail.com>
Diff between RolWinMulCor versions 0.1.0 dated 2020-05-12 and 0.4.0 dated 2020-05-22
DESCRIPTION | 10 +- MD5 | 22 ++-- NAMESPACE | 1 R/rolwinmulcor_1win.R | 195 +++++++++++++++++++++++++------------------- R/rolwinmulcor_heatmap.R | 153 +++++++++++++++++++--------------- data/YX_ecological_data.rda |only man/RolWinMulCor-package.Rd | 39 ++++---- man/YX_ecological_data.Rd |only man/rolwincor_1win.Rd | 27 +++--- man/rolwincor_heatmap.Rd | 24 ++--- man/rolwinmulcor_1win.Rd | 69 +++++++-------- man/rolwinmulcor_heatmap.Rd | 80 ++++++++---------- man/synthetic_data.Rd | 3 13 files changed, 341 insertions(+), 282 deletions(-)
Title: Convert Country Names and Country Codes
Description: Standardize country names, convert them into one of
40 different coding schemes, convert between coding schemes, and
assign region descriptors.
Author: Vincent Arel-Bundock [aut, cre]
(<https://orcid.org/0000-0003-2042-7063>),
CJ Yetman [ctb] (<https://orcid.org/0000-0001-5099-9500>),
Nils Enevoldsen [ctb] (<https://orcid.org/0000-0001-7195-4117>)
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between countrycode versions 1.1.3 dated 2020-05-07 and 1.2.0 dated 2020-05-22
countrycode-1.1.3/countrycode/tests/testthat/test-dictionaries.R |only countrycode-1.2.0/countrycode/DESCRIPTION | 10 countrycode-1.2.0/countrycode/MD5 | 45 +- countrycode-1.2.0/countrycode/NAMESPACE | 2 countrycode-1.2.0/countrycode/NEWS | 13 countrycode-1.2.0/countrycode/R/codelist.R | 24 - countrycode-1.2.0/countrycode/R/countrycode.R | 33 + countrycode-1.2.0/countrycode/R/countryname.R |only countrycode-1.2.0/countrycode/R/countryname_dict.R |only countrycode-1.2.0/countrycode/R/guess_field.R |only countrycode-1.2.0/countrycode/data/cldr_examples.rda |binary countrycode-1.2.0/countrycode/data/codelist.rda |binary countrycode-1.2.0/countrycode/data/codelist_panel.rda |binary countrycode-1.2.0/countrycode/data/countryname_dict.rda |only countrycode-1.2.0/countrycode/man/codelist.Rd | 24 - countrycode-1.2.0/countrycode/man/countrycode.Rd | 28 + countrycode-1.2.0/countrycode/man/countryname.Rd |only countrycode-1.2.0/countrycode/man/countryname_dict.Rd |only countrycode-1.2.0/countrycode/man/guess_field.Rd |only countrycode-1.2.0/countrycode/tests/testthat/data-known-name-variations.R | 178 ++++++++-- countrycode-1.2.0/countrycode/tests/testthat/test-basic.R | 13 countrycode-1.2.0/countrycode/tests/testthat/test-codelist.R |only countrycode-1.2.0/countrycode/tests/testthat/test-corner-cases.R |only countrycode-1.2.0/countrycode/tests/testthat/test-countryname.R |only countrycode-1.2.0/countrycode/tests/testthat/test-destination-only.R |only countrycode-1.2.0/countrycode/tests/testthat/test-known-name-variations.R | 14 countrycode-1.2.0/countrycode/tests/testthat/test-nomatch.R | 7 countrycode-1.2.0/countrycode/tests/testthat/test-regex-external.R | 2 countrycode-1.2.0/countrycode/tests/testthat/test-regex-special.R | 104 +---- countrycode-1.2.0/countrycode/tests/testthat/test-unicode-symbols.R |only 30 files changed, 316 insertions(+), 181 deletions(-)
Title: A Simple Graphical Representation of the Relative Occurrence and
Co-Occurrence of Events
Description: The unique function of this package allows representing in a single graph the relative occurrence and co-occurrence of events measured in a sample.
As examples, the package was applied to describe the occurrence and co-occurrence of different species of bacterial or viral symbionts infecting arthropods at the individual level. The graphics allows determining the prevalence of each symbiont and the patterns of multiple infections (i.e. how different symbionts share or not the same individual hosts).
We named the package after the famous painter as the graphical output recalls Mondrian’s paintings.
Author: Aurélie Siberchicot, Delphine Charif, Gabriel Terraz and Fabrice Vavre
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between Mondrian versions 1.0-0 dated 2016-03-04 and 1.1.0 dated 2020-05-22
DESCRIPTION | 11 ++++++----- MD5 | 16 +++++++++++++--- R/mondrian.R | 10 +++++----- inst |only man/Mondrian-package.Rd | 26 ++++++++++++++++---------- 5 files changed, 40 insertions(+), 23 deletions(-)
Title: Distributed Lag Non-Linear Models
Description: Collection of functions for distributed lag linear and non-linear models.
Author: Antonio Gasparrini [aut, cre],
Ben Armstrong [aut],
Fabian Scheipl [ctb]
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>
Diff between dlnm versions 2.4.1 dated 2020-05-13 and 2.4.2 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 14 ++++++++------ NEWS.md | 13 +++++++++++++ R/crosspred.R | 13 ++++++++----- inst/NEWS | 13 +++++++++++++ inst/doc/dlnmExtended.pdf |binary inst/doc/dlnmOverview.pdf |binary inst/doc/dlnmPenalized.pdf |binary inst/doc/dlnmTS.pdf |binary man/smooth.construct.cb.smooth.spec.Rd | 12 ++++++------ 11 files changed, 62 insertions(+), 31 deletions(-)
Title: Climate Variability Indices for Ecological Modelling
Description: Supports analysis of trends in climate change, ecological and crop modelling.
Author: Kauê de Sousa [aut, cre] (<https://orcid.org/0000-0002-7571-7845>),
Jacob van Etten [ctb, ths] (<https://orcid.org/0000-0001-7554-2558>),
Svein Ø. Solberg [ctb, ths] (<https://orcid.org/0000-0002-4491-4483>)
Maintainer: Kauê de Sousa <kaue.desousa@inn.no>
Diff between climatrends versions 0.1.6 dated 2020-05-20 and 0.1.7 dated 2020-05-22
DESCRIPTION | 24 +-- MD5 | 47 +++--- NAMESPACE | 4 NEWS.md | 17 +- R/ETo.R | 4 R/GDD.R | 348 ++++++++++++++++++++++--------------------------- R/clima_data.R | 10 - R/crop_sensitive.R | 4 R/get_timeseries.R | 3 R/internal_functions.R | 30 ++-- R/late_frost.R | 198 +++++++++++++++------------ R/rainfall.R | 14 - R/temperature.R | 14 - inst/CITATION |only inst/doc/Overview.Rmd | 5 inst/doc/Overview.html | 31 ++-- man/ETo.Rd | 1 man/GDD.Rd | 15 -- man/clima_data.Rd | 10 - man/crop_sensitive.Rd | 2 man/get_timeseries.Rd | 2 man/late_frost.Rd | 14 + man/rainfall.Rd | 1 man/temperature.Rd | 1 vignettes/Overview.Rmd | 5 25 files changed, 389 insertions(+), 415 deletions(-)
Title: Multiple Factor Analysis (MFA)
Description: Performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@dex.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MFAg versions 1.6 dated 2020-03-24 and 1.7 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 +- R/Plot.MFA_English.R | 9 ++++++--- man/MFAg-package.Rd | 4 ++-- 5 files changed, 17 insertions(+), 14 deletions(-)
Title: Manage 'tmux' Sessions, Windows, and Panes
Description: Create, control, and capture 'tmux' sessions, windows, and panes
using a pipeable API.
Author: Jeroen Janssens [aut, cre] (<https://orcid.org/0000-0002-5878-8924>),
Data Science Workshops [cph, fnd]
Maintainer: Jeroen Janssens <jeroen@datascienceworkshops.com>
Diff between tmuxr versions 0.2.3 dated 2020-05-07 and 0.2.4 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS.md | 5 +++++ README.md | 5 +++-- man/figures/demo.png |only tests/testthat/setup-tmuxr.R | 21 ++++++++++++++++----- tests/testthat/teardown-tmuxr.R | 11 +++++++++++ 7 files changed, 45 insertions(+), 16 deletions(-)
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' for extracting text, fonts, attachments and
metadata from a PDF file. Also supports high quality rendering of PDF documents into
PNG, JPEG, TIFF format, or into raw bitmap vectors for further processing in R.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between pdftools versions 2.3 dated 2019-11-10 and 2.3.1 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NEWS | 4 ++++ R/onload.R | 1 + cleanup | 2 +- configure | 18 ++++++++++-------- man/pdf_ocr.Rd | 28 +++++++++++++++++++++------- man/pdf_render_page.Rd | 32 +++++++++++++++++++++++++------- man/pdftools.Rd | 6 ++++-- man/qpdf.Rd | 6 ++++-- tests/poppler.R |only tests/poppler.Rout.save |only tests/testthat/test-encoding.R | 3 ++- 13 files changed, 88 insertions(+), 42 deletions(-)
Title: Multilevel Joint Modelling Multiple Imputation
Description: Similarly to Schafer's package 'pan', 'jomo' is a package for multilevel joint modelling multiple imputation (Carpenter and Kenward, 2013) <doi: 10.1002/9781119942283>.
Novel aspects of 'jomo' are the possibility of handling binary and categorical data through latent normal variables, the option to use cluster-specific covariance matrices and to impute compatibly with the substantive model.
Author: Matteo Quartagno, James Carpenter
Maintainer: Matteo Quartagno <m.quartagno@ucl.ac.uk>
Diff between jomo versions 2.7-0 dated 2020-05-13 and 2.7-1 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/jomo.clmm.R | 8 ++++++-- R/jomo.glmer.MCMCchain.R | 6 +++++- R/jomo.glmer.R | 6 +++++- R/jomo.lmer.R | 6 +++++- man/jomo.clmm.Rd | 7 +++---- man/jomo.coxph.MCMCchain.Rd | 2 +- man/jomo.coxph.Rd | 2 +- 9 files changed, 38 insertions(+), 23 deletions(-)
Title: Column-Linked and Row-Linked Matrices
Description: A class that links matrix-like objects (nodes) by rows or by
columns while behaving similarly to a base R matrix. Very large matrices
are supported if the nodes are file-backed matrices.
Author: Gustavo de los Campos [aut],
Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <cran@agrueneberg.info>
Diff between LinkedMatrix versions 1.3.1 dated 2018-08-06 and 1.4.0 dated 2020-05-22
LinkedMatrix-1.3.1/LinkedMatrix/R/package.R |only LinkedMatrix-1.3.1/LinkedMatrix/man/examples |only LinkedMatrix-1.3.1/LinkedMatrix/man/initialize-ColumnLinkedMatrix-method.Rd |only LinkedMatrix-1.3.1/LinkedMatrix/man/rbind.RowLinkedMatrix.Rd |only LinkedMatrix-1.3.1/LinkedMatrix/man/show-LinkedMatrix-method.Rd |only LinkedMatrix-1.3.1/LinkedMatrix/tests/testthat |only LinkedMatrix-1.3.1/LinkedMatrix/tests/testthat.R |only LinkedMatrix-1.4.0/LinkedMatrix/DESCRIPTION | 21 - LinkedMatrix-1.4.0/LinkedMatrix/MD5 | 58 +-- LinkedMatrix-1.4.0/LinkedMatrix/NAMESPACE | 5 LinkedMatrix-1.4.0/LinkedMatrix/NEWS.md | 17 - LinkedMatrix-1.4.0/LinkedMatrix/R/ColumnLinkedMatrix.R | 156 +--------- LinkedMatrix-1.4.0/LinkedMatrix/R/LinkedMatrix.R | 120 ------- LinkedMatrix-1.4.0/LinkedMatrix/R/RowLinkedMatrix.R | 110 +------ LinkedMatrix-1.4.0/LinkedMatrix/R/utils.R | 5 LinkedMatrix-1.4.0/LinkedMatrix/README.md | 19 - LinkedMatrix-1.4.0/LinkedMatrix/build |only LinkedMatrix-1.4.0/LinkedMatrix/inst |only LinkedMatrix-1.4.0/LinkedMatrix/man/ColumnLinkedMatrix-class.Rd | 78 ++--- LinkedMatrix-1.4.0/LinkedMatrix/man/ColumnLinkedMatrix.Rd |only LinkedMatrix-1.4.0/LinkedMatrix/man/LinkedMatrix-class.Rd | 37 +- LinkedMatrix-1.4.0/LinkedMatrix/man/LinkedMatrix-package.Rd | 18 - LinkedMatrix-1.4.0/LinkedMatrix/man/LinkedMatrix.Rd | 71 ++-- LinkedMatrix-1.4.0/LinkedMatrix/man/as.ColumnLinkedMatrix.Rd | 25 + LinkedMatrix-1.4.0/LinkedMatrix/man/as.matrix.LinkedMatrix.Rd | 26 + LinkedMatrix-1.4.0/LinkedMatrix/man/cbind.ColumnLinkedMatrix.Rd | 42 +- LinkedMatrix-1.4.0/LinkedMatrix/man/index.Rd | 36 +- LinkedMatrix-1.4.0/LinkedMatrix/man/nNodes.Rd | 21 - LinkedMatrix-1.4.0/LinkedMatrix/man/nodes.Rd | 21 - LinkedMatrix-1.4.0/LinkedMatrix/tests/tinytest.R |only 30 files changed, 337 insertions(+), 549 deletions(-)
Title: Estimates of Coefficient of Overlapping for Animal Activity
Patterns
Description: Provides functions to fit kernel density functions to
data on temporal activity patterns of animals; estimate coefficients
of overlapping of densities for two species; and calculate bootstrap
estimates of confidence intervals.
Author: Mike Meredith and Martin Ridout
Maintainer: Mike Meredith <mike@mmeredith.net>
Diff between overlap versions 0.3.2 dated 2018-05-03 and 0.3.3 dated 2020-05-22
overlap-0.3.2/overlap/man/example_data.Rd |only overlap-0.3.3/overlap/DESCRIPTION | 11 overlap-0.3.3/overlap/MD5 | 31 - overlap-0.3.3/overlap/NAMESPACE | 8 overlap-0.3.3/overlap/NEWS | 12 overlap-0.3.3/overlap/R/bootstrap.R |only overlap-0.3.3/overlap/build/vignette.rds |binary overlap-0.3.3/overlap/data/simCalls.rda |binary overlap-0.3.3/overlap/data/simulatedData.rda |binary overlap-0.3.3/overlap/inst/doc/overlap.R | 17 overlap-0.3.3/overlap/inst/doc/overlap.Rnw | 553 +++++++++---------- overlap-0.3.3/overlap/inst/doc/overlap.pdf |binary overlap-0.3.3/overlap/inst/tests/testthat/test-all.R | 155 ++--- overlap-0.3.3/overlap/man/bootEst.Rd | 47 - overlap-0.3.3/overlap/man/data_kerinci.Rd |only overlap-0.3.3/overlap/man/overlap-package.Rd | 6 overlap-0.3.3/overlap/man/sunTime.Rd | 6 overlap-0.3.3/overlap/vignettes/overlap.Rnw | 553 +++++++++---------- 18 files changed, 699 insertions(+), 700 deletions(-)
Title: Scenario Weights for Importance Measurement
Description: An efficient sensitivity analysis for stochastic models based on
Monte Carlo samples. Provides weights on simulated scenarios from a
stochastic model, such that stressed random variables fulfil given
probabilistic constraints (e.g. specified values for risk measures),
under the new scenario weights. Scenario weights are selected by
constrained minimisation of the relative entropy to the baseline model.
The 'SWIM' package is based on Pesenti S.M, Millossovich P., Tsanakas A.
(2019) "Reverse Sensitivity Testing: What does it take to break the model",
<openaccess.city.ac.uk/id/eprint/18896/>.
Author: Silvana M. Pesenti [aut, cre],
Alberto Bettini [aut],
Pietro Millossovich [aut],
Andreas Tsanakas [aut]
Maintainer: Silvana M. Pesenti <swimpackage@gmail.com>
Diff between SWIM versions 0.2.0 dated 2020-01-10 and 0.2.1 dated 2020-05-22
SWIM-0.2.0/SWIM/data/datalist |only SWIM-0.2.1/SWIM/DESCRIPTION | 20 +- SWIM-0.2.1/SWIM/MD5 | 78 ++++----- SWIM-0.2.1/SWIM/NAMESPACE | 2 SWIM-0.2.1/SWIM/NEWS.md | 10 + SWIM-0.2.1/SWIM/R/ES.R | 24 +- SWIM-0.2.1/SWIM/R/SWIM.R | 142 ++++++++-------- SWIM-0.2.1/SWIM/R/VaR.R | 91 +++++----- SWIM-0.2.1/SWIM/R/credit_data.R | 7 SWIM-0.2.1/SWIM/R/importance_rank.R | 60 +++--- SWIM-0.2.1/SWIM/R/plot_cdf.R | 77 ++++---- SWIM-0.2.1/SWIM/R/plot_hist.R | 66 +++---- SWIM-0.2.1/SWIM/R/plot_sensitivity.R | 86 ++++----- SWIM-0.2.1/SWIM/R/sensitivity.R | 165 +++++++++---------- SWIM-0.2.1/SWIM/R/stress_VaR.R | 100 +++++------ SWIM-0.2.1/SWIM/R/stress_VaR_ES.R | 108 ++++++------ SWIM-0.2.1/SWIM/R/stress_moment.R | 218 ++++++++++++------------- SWIM-0.2.1/SWIM/R/stress_user.R | 39 ++-- SWIM-0.2.1/SWIM/README.md | 57 +++--- SWIM-0.2.1/SWIM/build/partial.rdb |binary SWIM-0.2.1/SWIM/build/vignette.rds |only SWIM-0.2.1/SWIM/inst/CITATION |only SWIM-0.2.1/SWIM/inst/doc |only SWIM-0.2.1/SWIM/man/SWIM.Rd | 267 +++++++++++++++---------------- SWIM-0.2.1/SWIM/man/VaR_stressed.Rd | 195 +++++++++++----------- SWIM-0.2.1/SWIM/man/credit_data.Rd | 59 +++--- SWIM-0.2.1/SWIM/man/importance_rank.Rd | 61 +++---- SWIM-0.2.1/SWIM/man/plot_cdf.Rd | 69 ++++---- SWIM-0.2.1/SWIM/man/plot_hist.Rd | 161 +++++++++--------- SWIM-0.2.1/SWIM/man/plot_sensitivity.Rd | 87 +++++----- SWIM-0.2.1/SWIM/man/quantile_stressed.Rd | 9 - SWIM-0.2.1/SWIM/man/sensitivity.Rd | 121 +++++++------- SWIM-0.2.1/SWIM/man/stress.Rd | 120 ++++++------- SWIM-0.2.1/SWIM/man/stress_VaR.Rd | 212 ++++++++++++------------ SWIM-0.2.1/SWIM/man/stress_VaR_ES.Rd | 250 ++++++++++++++--------------- SWIM-0.2.1/SWIM/man/stress_mean.Rd | 180 ++++++++++---------- SWIM-0.2.1/SWIM/man/stress_mean_sd.Rd | 188 ++++++++++----------- SWIM-0.2.1/SWIM/man/stress_moment.Rd | 239 +++++++++++++-------------- SWIM-0.2.1/SWIM/man/stress_prob.Rd | 184 ++++++++++----------- SWIM-0.2.1/SWIM/man/stress_user.Rd | 149 ++++++++--------- SWIM-0.2.1/SWIM/vignettes |only 41 files changed, 1975 insertions(+), 1926 deletions(-)
Title: Dimension Reduction and Estimation Methods
Description: We provide linear and nonlinear dimension reduction techniques.
Intrinsic dimension estimation methods for exploratory analysis are also provided.
For more details on dimensionality techniques, see the paper by
Ma and Zhu (2013) <doi:10.1111/j.1751-5823.2012.00182.x> if you are interested in
statistical approach, or Engel, Huttenberger, and Hamann (2012)
<doi:10.4230/OASIcs.VLUDS.2011.135> for a broader multi-disciplinary overview.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>),
Changhee Suh [ctb]
Maintainer: Kisung You <kyoustat@gmail.com>
Diff between Rdimtools versions 1.0.2 dated 2020-05-04 and 1.0.3 dated 2020-05-22
Rdimtools-1.0.2/Rdimtools/R/linear_LPCA.R |only Rdimtools-1.0.2/Rdimtools/inst/doc/quick-start.html |only Rdimtools-1.0.2/Rdimtools/man/linear_LPCA.Rd |only Rdimtools-1.0.3/Rdimtools/DESCRIPTION | 6 Rdimtools-1.0.3/Rdimtools/MD5 | 39 ++-- Rdimtools-1.0.3/Rdimtools/NAMESPACE | 3 Rdimtools-1.0.3/Rdimtools/NEWS.md | 6 Rdimtools-1.0.3/Rdimtools/R/RcppExports.R | 29 +-- Rdimtools-1.0.3/Rdimtools/R/linear_LPCA2006.R |only Rdimtools-1.0.3/Rdimtools/R/linear_LSLS.R |only Rdimtools-1.0.3/Rdimtools/build/partial.rdb |binary Rdimtools-1.0.3/Rdimtools/build/vignette.rds |binary Rdimtools-1.0.3/Rdimtools/inst/REFERENCES.bib | 13 + Rdimtools-1.0.3/Rdimtools/inst/doc/quick-start.Rmd | 9 - Rdimtools-1.0.3/Rdimtools/inst/doc/quick-start.pdf |only Rdimtools-1.0.3/Rdimtools/man/linear_LPCA2006.Rd |only Rdimtools-1.0.3/Rdimtools/man/linear_LSLS.Rd |only Rdimtools-1.0.3/Rdimtools/src/RcppExports.cpp | 67 ++++---- Rdimtools-1.0.3/Rdimtools/src/methods_estimation.cpp | 1 Rdimtools-1.0.3/Rdimtools/src/methods_linear.cpp | 29 +++ Rdimtools-1.0.3/Rdimtools/src/methods_linear.h | 1 Rdimtools-1.0.3/Rdimtools/src/methods_nonlinear.cpp | 156 +++++++++++-------- Rdimtools-1.0.3/Rdimtools/src/methods_nonlinear.h | 19 +- Rdimtools-1.0.3/Rdimtools/vignettes/quick-start.Rmd | 9 - Rdimtools-1.0.3/Rdimtools/vignettes/quick-start.html |only 25 files changed, 238 insertions(+), 149 deletions(-)
Title: Enterprise Streamlined 'Shiny' Application Framework
Description: An enterprise-targeted scalable and UI-standardized 'shiny' framework
including a variety of developer convenience functions with the goal of both
streamlining robust application development while assisting with creating a
consistent user experience regardless of application or developer.
Author: Constance Brett [aut, cre],
Isaac Neuhaus [aut] (canvasXpress JavaScript Library Maintainer),
Ger Inberg [ctb],
Bristol-Meyers Squibb (BMS) [cph]
Maintainer: Constance Brett <connie@aggregate-genius.com>
Diff between periscope versions 0.4.10 dated 2020-05-19 and 0.4.10-1 dated 2020-05-22
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 2 +- inst/doc/downloadFile-module.html | 4 ++-- inst/doc/downloadablePlot-module.html | 4 ++-- inst/doc/downloadableTable-module.html | 4 ++-- inst/doc/new-application.html | 4 ++-- tests/testthat/test_ui_misc_functions.R | 4 ++-- 8 files changed, 21 insertions(+), 21 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely
compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and
do basic R-style math, and compiling both models and nimbleFunctions via custom-
generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering,
Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction
system makes it easy to do things like implement new MCMC samplers from R,
customize the assignment of samplers to different parts of a model from R, and
compile the new samplers automatically via C++ alongside the samplers 'NIMBLE'
provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible:
New distributions and functions can be added, including as calls to external
compiled code. Although most people think of MCMC as the main goal of the
'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing
arbitrary other kinds of model-generic algorithms as well. A full User Manual is
available at <https://r-nimble.org>.
Author: Perry de Valpine [aut],
Christopher Paciorek [aut, cre],
Daniel Turek [aut],
Nick Michaud [aut],
Cliff Anderson-Bergman [aut],
Fritz Obermeyer [aut],
Claudia Wehrhahn Cortes [aut] (Bayesian nonparametrics system),
Abel Rodrìguez [aut] (Bayesian nonparametrics system),
Duncan Temple Lang [aut] (packaging configuration),
Sally Paganin [aut] (reversible jump MCMC),
Jagadish Babu [ctb] (code for the compilation system for an early
version of NIMBLE),
Dao Nguyen [ctb] (contributions to the IF2 code),
Lauren Ponisio [ctb] (contributions to the cross-validation code),
Peter Sujan [ctb] (multivariate t distribution code)
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 0.9.0 dated 2019-12-18 and 0.9.1 dated 2020-05-22
DESCRIPTION | 17 ++-- INSTALL | 6 - LICENSE | 2 MD5 | 78 +++++++++--------- R/BNP_distributions.R | 9 +- R/BUGS_BUGSdecl.R | 2 R/BUGS_model.R | 4 R/BUGS_modelDef.R | 144 ++++++++++++++++++++++++++--------- R/BUGS_readBUGS.R | 2 R/BUGS_utils.R | 2 R/MCMC_autoBlock.R | 18 ++-- R/MCMC_build.R | 4 R/MCMC_configuration.R | 27 +++--- R/MCMC_run.R | 2 R/MCMC_samplers.R | 138 ++++++++++++++++++--------------- R/MCMC_utils.R | 10 +- R/cppDefs_cppProject.R | 56 +++++++------ R/distributions_processInputList.R | 60 ++++++++------ R/filtering_IF2.R | 10 -- R/nimbleFunction_Rexecution.R | 17 +++- R/nimbleFunction_keywordProcessing.R | 2 R/nimbleProject.R | 2 R/options.R | 1 inst/CITATION | 42 +++++++--- inst/COPYRIGHTS | 4 inst/NEWS | 40 +++++++++ inst/tests/test-bnp.R | 2 inst/tests/test-expandNodeNames.R |only inst/tests/test-models.R | 15 +++ inst/tests/test-testTools.R | 8 + inst/tests/test_utils.R | 8 - inst/tests/test_utils_partial.R |only inst/tests/userTestLog_Correct.Rout | 6 - man/ChineseRestaurantProcess.Rd | 2 man/MCMCconf-class.Rd | 12 +- man/StickBreakingFunction.Rd | 2 man/buildIteratedFilter2.Rd | 21 +++++ man/configureMCMC.Rd | 9 +- man/nimble-R-functions.Rd | 18 +++- man/nimbleMCMC.Rd | 2 man/samplers.Rd | 6 + 41 files changed, 528 insertions(+), 282 deletions(-)
Title: Calculate and Analyze Blau Status for (Covert) Organizations
Description: An integrated set of tools to calculate and analyze Blau statuses quantifying social distance between individuals belonging to (covert) organizations. Relational (network) data can be incorporated for additional analyses. This project is supported by Defense Threat Reduction Agency (DTRA) Grant HDTRA-10-1-0043.
Author: Cheng Wang*, Michael Genkin*, George Berry, Liyuan Chen, Matthew Brashears *Both authors contributed equally to this work and their names are randomly ordered
Maintainer: Cheng Wang <chengwang@wayne.edu>
Diff between Blaunet versions 2.0.9 dated 2020-05-10 and 2.1.0 dated 2020-05-22
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/zzz.R | 2 +- inst/scripts/blaunetgui.R | 6 +++--- inst/scripts/command.pdf |binary inst/scripts/graphic.pdf |binary man/Blaunet-package.Rd | 10 +++++----- 7 files changed, 21 insertions(+), 21 deletions(-)
More information about DecisionAnalysis at CRAN
Permanent link
Title: Estimation and Hypothesis Testing for Threshold Regression
Description: Threshold regression models are also called two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models, with and without interaction terms. Methods for both continuous and discontinuous threshold models are included, but the support for the former is much greater. This package is described in Fong, Huang, Gilbert and Permar (2017) <DOI:10.1186/s12859-017-1863-x>.
Author: Youyi Fong [cre],
Adam Elder [aut],
Hyunju Son [aut],
Zonglin He [aut],
Tao Yang [aut]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between chngpt versions 2020.5-13 dated 2020-05-13 and 2020.5-21 dated 2020-05-22
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/double.hinge.R | 6 +++++- inst/doc/chngpt-vignette.pdf |binary src/error.h | 3 ++- 6 files changed, 19 insertions(+), 11 deletions(-)
Title: PHATE - Potential of Heat-Diffusion for Affinity-Based
Transition Embedding
Description: PHATE is a tool for visualizing high dimensional single-cell data
with natural progressions or trajectories. PHATE uses a novel conceptual framework
for learning and visualizing the manifold inherent to biological systems in which
smooth transitions mark the progressions of cells from one state to another.
To see how PHATE can be applied to single-cell RNA-seq datasets from hematopoietic
stem cells, human embryonic stem cells, and bone marrow samples, check out our publication in Nature Biotechnology
at <doi:10.1038/s41587-019-0336-3>.
Author: Krishnan Srinivasan [aut],
Scott Gigante [cre] (<https://orcid.org/0000-0002-4544-2764>)
Maintainer: Scott Gigante <scott.gigante@yale.edu>
Diff between phateR versions 1.0.0 dated 2019-12-05 and 1.0.4 dated 2020-05-22
DESCRIPTION | 9 +++++---- MD5 | 11 ++++++----- NAMESPACE | 3 +++ R/phate.R | 4 ++-- R/utils.R | 24 ++++++++++++------------ README.md | 8 ++++---- man/check_pyphate_version.Rd |only 7 files changed, 32 insertions(+), 27 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Pacote para analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.1.2 dated 2020-03-24 and 2.1.3 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- R/Plot.CA.R | 3 +++ R/Plot.CCA.R | 3 +++ R/Plot.FA.R | 6 ++++-- R/Plot.MFA.R | 3 +++ R/Plot.PCA.R | 3 +++ R/Plot.PP.R | 6 +++--- R/Plot.Regr.R | 2 ++ man/MVar.pt-package.Rd | 4 ++-- 11 files changed, 38 insertions(+), 22 deletions(-)
Title: Multivariate Analysis
Description: Package for multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.1.2 dated 2020-03-24 and 2.1.3 dated 2020-05-22
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- R/Plot.CA_English.R | 3 +++ R/Plot.CCA_English.R | 3 +++ R/Plot.FA_English.R | 5 ++++- R/Plot.MFA_English.R | 9 ++++++--- R/Plot.PCA_English.R | 3 +++ R/Plot.PP_English.R | 4 ++-- R/Plot.Regr_English.R | 2 ++ man/MVar-package.Rd | 4 ++-- 11 files changed, 40 insertions(+), 23 deletions(-)
Title: Karl Broman's R Code
Description: Miscellaneous R functions, including functions related to
graphics (mostly for base graphics), permutation tests, running
mean/median, and general utilities.
Author: Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>),
Aimee Teo Broman [ctb] (<https://orcid.org/0000-0003-3783-2807>)
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between broman versions 0.69-5 dated 2019-04-11 and 0.70-4 dated 2020-05-22
DESCRIPTION | 18 ++++++++----- MD5 | 52 +++++++++++++++++++++------------------ NAMESPACE | 3 ++ NEWS | 17 ++++++++++++ R/ciplot.R | 5 ++- R/holmans_triangle.R | 11 +++++++- R/trigrid.R |only R/twocolorpal.R |only R/vec2string.R | 9 ++++-- data/numbers-cap.RData |binary data/numbers.RData |binary man/arrowlocator.Rd | 9 +++++- man/brocolors.Rd | 6 +++- man/ciplot.Rd | 12 +++++++-- man/excel_fig.Rd | 27 +++++++++++++++----- man/grayplot.Rd | 26 +++++++++++++++---- man/grayplot_na.Rd | 15 +++++++++-- man/manyboxplot.Rd | 9 +++++- man/notin.Rd | 10 +++---- man/numbers.Rd | 4 ++- man/plot_crayons.Rd | 10 ++++++- man/revgray.Rd | 2 - man/runningmean.Rd | 9 +++++- man/trigrid.Rd |only man/triplot.Rd | 21 ++++++++++++++- man/twocolorpal.Rd |only man/vec2string.Rd | 5 +++ man/venn.Rd | 10 ++++++- tests/testthat/test-vec2string.R | 5 +++ 29 files changed, 220 insertions(+), 75 deletions(-)