Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version),
Douglas Bates [aut] (up to 2007),
Saikat DebRoy [ctb] (up to 2002),
Deepayan Sarkar [ctb] (up to 2005),
EISPACK authors [ctb] (src/rs.f),
Siem Heisterkamp [ctb] (Author fixed sigma),
Bert Van Willigen [ctb] (Programmer fixed sigma),
R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>
Diff between nlme versions 3.1-147 dated 2020-04-13 and 3.1-148 dated 2020-05-23
ChangeLog | 18 +++++++++++++++++- DESCRIPTION | 10 ++++++---- MD5 | 6 +++--- man/nlsList.Rd | 6 ++++-- 4 files changed, 30 insertions(+), 10 deletions(-)
Title: Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Description: Reading and writing data stored by some versions of
'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',
and for reading and writing some 'dBase' files.
Author: R Core Team [aut, cph, cre],
Roger Bivand [ctb, cph],
Vincent J. Carey [ctb, cph],
Saikat DebRoy [ctb, cph],
Stephen Eglen [ctb, cph],
Rajarshi Guha [ctb, cph],
Swetlana Herbrandt [ctb],
Nicholas Lewin-Koh [ctb, cph],
Mark Myatt [ctb, cph],
Michael Nelson [ctb],
Ben Pfaff [ctb],
Brian Quistorff [ctb],
Frank Warmerdam [ctb, cph],
Stephen Weigand [ctb, cph],
Free Software Foundation, Inc. [cph]
Maintainer: R Core Team <R-core@R-project.org>
Diff between foreign versions 0.8-79 dated 2020-04-26 and 0.8-80 dated 2020-05-23
ChangeLog | 4 ++++ DESCRIPTION | 10 ++++++---- MD5 | 4 ++-- 3 files changed, 12 insertions(+), 6 deletions(-)
Title: Data Generation with Poisson, Binary, Ordinal and Normal
Components
Description: Generation of multiple count, binary, ordinal and normal variables simultaneously given the marginal characteristics and association structure.
The details of the method are explained in Demirtas et al. (2012) <DOI:10.1002/sim.5362>.
Author: Hakan Demirtas, Yiran Hu, Rawan Allozi, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between PoisBinOrdNor versions 1.6.1 dated 2019-05-15 and 1.6.2 dated 2020-05-23
PoisBinOrdNor-1.6.1/PoisBinOrdNor/R/PoisBinOrdNor-internal.R |only PoisBinOrdNor-1.6.2/PoisBinOrdNor/DESCRIPTION | 9 ++++--- PoisBinOrdNor-1.6.2/PoisBinOrdNor/MD5 | 5 +--- PoisBinOrdNor-1.6.2/PoisBinOrdNor/man/PoisBinOrdNor-package.Rd | 12 +++------- 4 files changed, 11 insertions(+), 15 deletions(-)
Title: Inference in Randomized Controlled Trials with Death and
Missingness
Description: In randomized studies involving severely ill patients, functional
outcomes are often unobserved due to missed clinic visits, premature
withdrawal or death. It is well known that if these unobserved functional
outcomes are not handled properly, biased treatment comparisons can be
produced. In this package, we implement a procedure for comparing treatments
that is based on the composite endpoint of both the functional outcome and
survival. The procedure was proposed in Wang et al. (2016) <DOI:10.1111/biom.12594>
and Wang et al. (2020) <DOI:10.18637/jss.v093.i12>. It considers missing data
imputation with different sensitivity
analysis strategies to handle the unobserved functional outcomes not due to
death.
Author: Chenguang Wang [aut, cre],
Andrew Leroux [aut, cre],
Elizabeth Colantuoni [aut],
Daniel O Scharfstein [aut],
Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Maintainer: Chenguang Wang <cwang68@jhmi.edu>
Diff between idem versions 4.0 dated 2018-11-09 and 5.0 dated 2020-05-23
DESCRIPTION | 17 MD5 | 55 NAMESPACE | 2 NEWS.md | 3 R/idem_analysis.R | 37 R/idem_imputation.R | 22 R/idem_mice.R |only R/idem_package.R | 8 R/idem_tools.R | 127 R/im_sace.R | 2 build/vignette.rds |binary inst/CITATION |only inst/doc/vignette.R | 34 inst/doc/vignette.html | 9757 +++++++++++++++++++++++++++++++++--------- inst/shiny/server.R | 2 man/abc.Rd | 6 man/imData.Rd | 19 man/imImpAll.Rd | 15 man/imImpAll_mice.Rd |only man/imImpSingle.Rd | 14 man/imInfer.Rd | 13 man/plot.IDEMDATA.Rd | 9 man/plot.IDEMIMP.Rd | 3 man/plot.IDEMINFER.Rd | 3 man/plot.summary.IDEMINFER.Rd | 11 man/summary.IDEMDATA.Rd | 3 man/summary.IDEMINFER.Rd | 3 src/Makevars | 3 src/Makevars.win | 3 src/stan_files/idem.stan | 4 30 files changed, 7959 insertions(+), 2216 deletions(-)
Title: Tidy Interface to 'data.table'
Description: Tidy interface to 'data.table'. 'rlang' compatible, which allows the user to build custom functions much like they would in the tidyverse.
Author: Mark Fairbanks [aut, cre],
Tyson Barrett [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb],
Lionel Henry [ctb],
Matt Carlson [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.4.1 dated 2020-04-30 and 0.5.0 dated 2020-05-23
DESCRIPTION | 19 ++ MD5 | 217 +++++++++++++++++----------------- NAMESPACE | 23 +++ NEWS.md | 16 ++ R/arrange.R | 22 +-- R/as_tidytable.R | 15 -- R/bind.R | 15 -- R/case.R | 12 - R/count.R | 25 +-- R/desc.R | 4 R/distinct.R | 31 ++-- R/drop_na.R | 20 +-- R/dt.R | 18 +- R/fill.R | 57 +++++--- R/filter.R | 44 +++--- R/get_dummies.R | 36 ++--- R/group_split.R | 22 +-- R/inv_gc.R | 2 R/is_tidytable.R | 2 R/join.R | 4 R/lead_lag.R |only R/mutate.R | 63 +++++---- R/mutate_across.R | 48 +++---- R/mutate_variants.R | 33 ++--- R/n.R | 2 R/nest.R | 39 +++--- R/pivot_longer.R | 27 ++-- R/pivot_wider.R | 62 ++++----- R/pull.R | 22 +-- R/relocate.R | 38 ++--- R/rename.R | 20 +-- R/rename_variants.R | 21 ++- R/rename_with.R | 28 ++-- R/replace_na.R | 6 R/row_number.R | 2 R/select.R | 34 ++--- R/select_helpers.R | 42 ++++-- R/separate.R | 32 ++--- R/slice.R | 105 +++++++--------- R/summarize.R | 38 ++--- R/tidytable.R | 9 + R/tidytable_package.R | 36 ++++- R/top_n.R | 25 +-- R/transmute.R | 15 +- R/unite.R | 36 ++--- R/unnest.R | 49 +++---- R/utils-general.R | 9 - R/utils-selectors.R | 79 ++++++------ R/where.R |only README.md | 118 +++++++++++------- man/arrange..Rd | 12 - man/bind_rows..Rd | 4 man/count..Rd | 16 +- man/desc..Rd | 4 man/distinct..Rd | 12 - man/drop_na..Rd | 10 - man/dt.Rd | 10 - man/fill..Rd | 11 - man/filter..Rd | 12 - man/get_dummies..Rd | 12 - man/group_split..Rd | 12 - man/inv_gc.Rd | 2 man/is_tidytable.Rd | 2 man/leads..Rd |only man/left_join..Rd | 4 man/mutate..Rd | 12 - man/mutate_across..Rd | 22 +-- man/mutate_if..Rd | 17 +- man/n..Rd | 2 man/nest_by..Rd | 18 +- man/pivot_longer..Rd | 18 +- man/pivot_wider..Rd | 12 - man/pull..Rd | 10 - man/reexports.Rd | 12 + man/relocate..Rd | 10 - man/rename..Rd | 8 - man/rename_all..Rd | 6 man/rename_with..Rd | 15 +- man/replace_na..Rd | 4 man/row_number..Rd | 2 man/select..Rd | 24 +-- man/separate..Rd | 8 - man/slice..Rd | 36 ++--- man/starts_with..Rd | 12 - man/summarize..Rd | 24 +-- man/top_n..Rd | 12 - man/transmute..Rd | 6 man/unite..Rd | 8 - man/unnest..Rd | 8 - man/where.Rd |only tests/testthat/test-arrange.R | 15 ++ tests/testthat/test-count.R | 17 ++ tests/testthat/test-distinct.R | 16 ++ tests/testthat/test-drop_na.R | 19 ++ tests/testthat/test-fill.R | 26 ++-- tests/testthat/test-filter.R | 49 +++++++ tests/testthat/test-group_split.R |only tests/testthat/test-lead..R |only tests/testthat/test-mutate.R | 121 ++++++++++++++++-- tests/testthat/test-mutate_variants.R | 20 +-- tests/testthat/test-nest.R |only tests/testthat/test-pivot_longer.R | 22 ++- tests/testthat/test-pivot_wider.R | 17 ++ tests/testthat/test-pull.R | 13 ++ tests/testthat/test-relocate.R | 2 tests/testthat/test-rename.R | 18 ++ tests/testthat/test-select.R | 2 tests/testthat/test-slice.R | 54 +++++++- tests/testthat/test-summarize.R | 29 ++++ tests/testthat/test-tidytable.R |only tests/testthat/test-top_n.R | 13 +- tests/testthat/test-transmute.R |only tests/testthat/test-unite.R | 17 ++ tests/testthat/test-unnest.R | 21 +++ 114 files changed, 1536 insertions(+), 1026 deletions(-)
Title: Linguistic Phonetic Fieldwork Tools
Description: There are a lot of different typical tasks that have to be solved during phonetic research and experiments. This includes creating a presentation that will contain all stimuli, renaming and concatenating multiple sound files recorded during a session, automatic annotation in 'Praat' TextGrids (this is one of the sound annotation standards provided by 'Praat' software, see Boersma & Weenink 2018 <http://www.fon.hum.uva.nl/praat/>), creating an html table with annotations and spectrograms, and converting multiple formats ('Praat' TextGrid, 'EXMARaLDA' and 'ELAN'). All of these tasks can be solved by a mixture of different tools (any programming language has programs for automatic renaming, and Praat contains scripts for concatenating and renaming files, etc.). `phonfieldwork` provides a functionality that will make it easier to solve those tasks independently of any additional tools. You can also compare the functionality with other packages: 'rPraat' <https://CRAN.R-project.org/package=rPraat>, 'textgRid' <https://CRAN.R-project.org/package=textgRid>.
Author: George Moroz
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between phonfieldwork versions 0.0.3 dated 2020-01-07 and 0.0.4 dated 2020-05-23
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NAMESPACE | 1 + NEWS | 5 ++++- R/annotate_textgrid.R | 5 +++-- R/create_subannotation.R |only R/create_viewer.R | 2 +- R/df_to_tier.R | 2 +- man/create_subannotation.Rd |only man/create_viewer.Rd | 2 +- man/example_textgrid.Rd | 4 +++- 11 files changed, 28 insertions(+), 19 deletions(-)
Title: Text Plots
Description: Visualise complex relations in texts. This is done by providing functionalities for displaying
text co-occurrence networks, text correlation networks, dependency relationships as well as text clustering.
Feel free to join the effort of providing interesting text visualisations.
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Sacha Epskamp [ctb, cph] (code in R/matrix_reduction.R adapted from the
qgraph package version 1.4.0 which is GPL-2 licensed),
Ingo Feinerer and Kurt Hornik [ctb, cph] (partial code in
R/textplot_corlines.R adapted from the tm package version 0.4 which
is GPL-2 licensed)
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between textplot versions 0.1.1 dated 2020-04-29 and 0.1.2 dated 2020-05-23
DESCRIPTION | 14 ++-- MD5 | 45 +++++++-------- NAMESPACE | 7 ++ NEWS.md | 7 ++ R/pkg.R | 1 R/textplot_bar.R | 10 +++ R/textplot_biterms.R | 64 ++++++++++++++------- R/textplot_cooccurrence.R | 32 +++++++--- R/textplot_corglasso.R | 10 +++ R/textplot_corlines.R | 29 ++++++--- R/textplot_dependencies.R | 25 +++++--- README.md | 11 +++ inst/doc/textplot-examples.R | 111 +++++++++++++++++++++++++++++++------ inst/doc/textplot-examples.Rnw | 78 +++++++++++++++++++++++++- inst/doc/textplot-examples.pdf |binary man/plot.BTM.Rd | 3 - man/textplot_bar.Rd | 9 ++- man/textplot_bitermclusters.Rd | 25 +++++--- man/textplot_cooccurrence.Rd | 16 +++-- man/textplot_correlation_glasso.Rd | 13 ++-- man/textplot_correlation_lines.Rd | 9 ++- man/textplot_dependencyparser.Rd | 12 +++- vignettes/textplot-examples.Rnw | 78 +++++++++++++++++++++++++- vignettes/textplot-examples.gif |only 24 files changed, 477 insertions(+), 132 deletions(-)
Title: A Framework for Data-Driven Stochastic Disease Spread
Simulations
Description: Provides an efficient and very flexible framework to
conduct data-driven epidemiological modeling in realistic large
scale disease spread simulations. The framework integrates
infection dynamics in subpopulations as continuous-time Markov
chains using the Gillespie stochastic simulation algorithm and
incorporates available data such as births, deaths and movements
as scheduled events at predefined time-points. Using C code for
the numerical solvers and 'OpenMP' (if available) to divide work
over multiple processors ensures high performance when simulating
a sample outcome. One of our design goals was to make the package
extendable and enable usage of the numerical solvers from other R
extension packages in order to facilitate complex epidemiological
research. The package contains template models and can be extended
with user-defined models. For more details see the paper by
Widgren, Bauer, Eriksson and Engblom (2019)
<doi:10.18637/jss.v091.i12>.
Author: Stefan Widgren [aut, cre] (<https://orcid.org/0000-0001-5745-2284>),
Robin Eriksson [aut] (<https://orcid.org/0000-0002-4291-712X>),
Stefan Engblom [aut] (<https://orcid.org/0000-0002-3614-1732>),
Pavol Bauer [aut] (<https://orcid.org/0000-0003-4328-7171>),
Thomas Rosendal [ctb] (<https://orcid.org/0000-0002-6576-9668>),
Attractive Chaos [cph] (Author of 'kvec.h'.)
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between SimInf versions 6.5.1 dated 2020-04-01 and 7.0.0 dated 2020-05-23
SimInf-6.5.1/SimInf/R/run_outer.R |only SimInf-6.5.1/SimInf/man/run_outer.Rd |only SimInf-6.5.1/SimInf/src/misc/SimInf_forward_euler_linear_decay.h |only SimInf-6.5.1/SimInf/src/misc/SimInf_local_spread.h |only SimInf-6.5.1/SimInf/tests/run_outer.R |only SimInf-7.0.0/SimInf/DESCRIPTION | 24 SimInf-7.0.0/SimInf/MD5 | 160 ++-- SimInf-7.0.0/SimInf/NAMESPACE | 10 SimInf-7.0.0/SimInf/NEWS.md | 66 + SimInf-7.0.0/SimInf/R/C-generator.R |only SimInf-7.0.0/SimInf/R/SEIR.R | 22 SimInf-7.0.0/SimInf/R/SIR.R | 17 SimInf-7.0.0/SimInf/R/SISe.R | 2 SimInf-7.0.0/SimInf/R/SISe3.R | 2 SimInf-7.0.0/SimInf/R/SISe3_sp.R | 2 SimInf-7.0.0/SimInf/R/SISe_sp.R | 2 SimInf-7.0.0/SimInf/R/SimInf_events.R | 79 +- SimInf-7.0.0/SimInf/R/SimInf_model.R | 351 --------- SimInf-7.0.0/SimInf/R/check_arguments.R | 46 + SimInf-7.0.0/SimInf/R/formula.R |only SimInf-7.0.0/SimInf/R/init.R |only SimInf-7.0.0/SimInf/R/mparse.R | 142 --- SimInf-7.0.0/SimInf/R/package_skeleton.R | 69 + SimInf-7.0.0/SimInf/R/plot.R | 2 SimInf-7.0.0/SimInf/R/prevalence.R | 26 SimInf-7.0.0/SimInf/R/print.R | 95 +- SimInf-7.0.0/SimInf/R/priors.R |only SimInf-7.0.0/SimInf/R/run.R | 207 +++-- SimInf-7.0.0/SimInf/R/trajectory.R | 20 SimInf-7.0.0/SimInf/R/valid.R |only SimInf-7.0.0/SimInf/README.md | 8 SimInf-7.0.0/SimInf/configure.ac | 2 SimInf-7.0.0/SimInf/configure.win | 7 SimInf-7.0.0/SimInf/inst/doc/SimInf.R | 6 SimInf-7.0.0/SimInf/inst/doc/SimInf.Rnw | 119 +-- SimInf-7.0.0/SimInf/inst/doc/SimInf.pdf |binary SimInf-7.0.0/SimInf/inst/include/SimInf.h | 65 + SimInf-7.0.0/SimInf/man/C_code.Rd | 12 SimInf-7.0.0/SimInf/man/SEIR.Rd | 21 SimInf-7.0.0/SimInf/man/SIR.Rd | 12 SimInf-7.0.0/SimInf/man/SimInf_events-class.Rd | 8 SimInf-7.0.0/SimInf/man/SimInf_events.Rd | 68 + SimInf-7.0.0/SimInf/man/SimInf_model-class.Rd | 2 SimInf-7.0.0/SimInf/man/events_SISe3.Rd | 4 SimInf-7.0.0/SimInf/man/nodes.Rd | 4 SimInf-7.0.0/SimInf/man/package_skeleton.Rd | 7 SimInf-7.0.0/SimInf/man/run.Rd | 27 SimInf-7.0.0/SimInf/man/u0_SISe3.Rd | 4 SimInf-7.0.0/SimInf/src/Makevars.in | 4 SimInf-7.0.0/SimInf/src/Makevars.win | 4 SimInf-7.0.0/SimInf/src/SimInf-win.def |only SimInf-7.0.0/SimInf/src/SimInf.c | 127 +-- SimInf-7.0.0/SimInf/src/SimInf.h | 65 + SimInf-7.0.0/SimInf/src/init.c | 35 SimInf-7.0.0/SimInf/src/misc/SimInf_arg.c | 29 SimInf-7.0.0/SimInf/src/misc/SimInf_arg.h | 1 SimInf-7.0.0/SimInf/src/misc/SimInf_forward_euler_linear_decay.c | 6 SimInf-7.0.0/SimInf/src/misc/SimInf_ldata.c | 5 SimInf-7.0.0/SimInf/src/misc/SimInf_local_spread.c | 6 SimInf-7.0.0/SimInf/src/misc/SimInf_openmp.c | 11 SimInf-7.0.0/SimInf/src/misc/SimInf_trajectory.c | 16 SimInf-7.0.0/SimInf/src/misc/binheap.c | 10 SimInf-7.0.0/SimInf/src/models/SEIR.c | 40 - SimInf-7.0.0/SimInf/src/models/SIR.c | 32 SimInf-7.0.0/SimInf/src/models/SISe.c | 22 SimInf-7.0.0/SimInf/src/models/SISe3.c | 44 - SimInf-7.0.0/SimInf/src/models/SISe3_sp.c | 43 - SimInf-7.0.0/SimInf/src/models/SISe_sp.c | 21 SimInf-7.0.0/SimInf/src/solvers/SimInf_solver.c | 286 ++++++- SimInf-7.0.0/SimInf/src/solvers/SimInf_solver.h | 7 SimInf-7.0.0/SimInf/src/solvers/aem/SimInf_solver_aem.c | 8 SimInf-7.0.0/SimInf/src/solvers/ssm/SimInf_solver_ssm.c | 3 SimInf-7.0.0/SimInf/tests/SEIR.R | 24 SimInf-7.0.0/SimInf/tests/SIR.R | 22 SimInf-7.0.0/SimInf/tests/SISe.R | 6 SimInf-7.0.0/SimInf/tests/SISe3.R | 6 SimInf-7.0.0/SimInf/tests/SISe3_sp.R | 6 SimInf-7.0.0/SimInf/tests/SISe_sp.R | 6 SimInf-7.0.0/SimInf/tests/SimInf.R | 6 SimInf-7.0.0/SimInf/tests/SimInf_events.R | 6 SimInf-7.0.0/SimInf/tests/SimInf_model.R | 59 - SimInf-7.0.0/SimInf/tests/mparse.R | 379 ++++++++-- SimInf-7.0.0/SimInf/tests/package_skeleton.R | 8 SimInf-7.0.0/SimInf/tests/priors.R |only SimInf-7.0.0/SimInf/tests/sample_select.R | 225 +++++ SimInf-7.0.0/SimInf/vignettes/SimInf.Rnw | 119 +-- SimInf-7.0.0/SimInf/vignettes/SimInf.bib | 12 87 files changed, 2175 insertions(+), 1254 deletions(-)
Title: Exact Variable-Subset Selection in Linear Regression
Description: Exact and approximation algorithms for variable-subset
selection in ordinary linear regression models. Either compute all
submodels with the lowest residual sum of squares, or determine the
single-best submodel according to a pre-determined statistical
criterion. Hofmann et al. (2020) <10.18637/jss.v093.i03>.
Author: Marc Hofmann [aut, cre],
Cristian Gatu [aut],
Erricos J. Kontoghiorghes [aut],
Ana Colubi [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Martin Moene [cph] (for the GSL Lite library),
Microsoft Corporation [cph] (for the GSL Lite library),
Free Software Foundation, Inc. [cph] (for snippets from the GNU ISO C++
Library)
Maintainer: Marc Hofmann <marc.hofmann@gmail.com>
Diff between lmSubsets versions 0.5 dated 2020-04-28 and 0.5-1 dated 2020-05-23
lmSubsets-0.5-1/lmSubsets/DESCRIPTION | 8 lmSubsets-0.5-1/lmSubsets/MD5 | 126 ++++------ lmSubsets-0.5-1/lmSubsets/R/format.R | 2 lmSubsets-0.5-1/lmSubsets/R/generic.R | 2 lmSubsets-0.5-1/lmSubsets/R/globals.R | 2 lmSubsets-0.5-1/lmSubsets/R/ic.R | 2 lmSubsets-0.5-1/lmSubsets/R/image.R | 2 lmSubsets-0.5-1/lmSubsets/R/lmSelect.R | 2 lmSubsets-0.5-1/lmSubsets/R/lmSubsets.R | 2 lmSubsets-0.5-1/lmSubsets/R/stats.R | 2 lmSubsets-0.5-1/lmSubsets/R/summary.R | 2 lmSubsets-0.5-1/lmSubsets/R/util.R | 2 lmSubsets-0.5-1/lmSubsets/build/partial.rdb |binary lmSubsets-0.5-1/lmSubsets/inst/doc/lmSubsets.pdf |binary lmSubsets-0.5-1/lmSubsets/src/include/cxx11.inc | 4 lmSubsets-0.5-1/lmSubsets/src/include/gsl/gsl | 2 lmSubsets-0.5-1/lmSubsets/src/include/gsl/gsl-lite-R.hh |only lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/givens.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/lapack.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/lapack.inc | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/matrix.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/matrix.inc | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/matrix_impl.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/subscript.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/vector.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/vector.inc | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/detail/vector_impl.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/givens.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/lapack.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/matrix.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/core/vector.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/detail/fortran.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/detail/interrupt.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/abba.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/aic.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/bba.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/dca.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/abba.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/aic.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/aux_heap.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/bba.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/dca.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/dca_node.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/dca_partial.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/dca_preo.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/dca_qrz.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/dca_result.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/dca_state.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/dca_subset.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/hbba.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/log_lik.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/detail/subset.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/hbba.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/subset.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/subset/table.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/util/algo.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/util/detail/algo.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/util/detail/function_traits.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/util/detail/misc.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/util/function_traits.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/mcs/util/misc.hh | 2 lmSubsets-0.5-1/lmSubsets/src/include/r_interrupt.inc | 2 lmSubsets-0.5-1/lmSubsets/src/lmSubsets.cc | 2 lmSubsets-0.5/lmSubsets/src/include/gsl/gsl-lite.hh |only lmSubsets-0.5/lmSubsets/vignettes/v92i05-1.tex |only lmSubsets-0.5/lmSubsets/vignettes/v92i05.tex |only 66 files changed, 125 insertions(+), 127 deletions(-)
Title: Interface for the RobinHood.com No Commission Investing Platform
Description: Execute API calls to the RobinHood <https://robinhood.com> investing platform. Functionality includes accessing account data and current holdings, retrieving investment statistics and quotes, placing and canceling orders, getting market trading hours, searching investments by popular tag, and interacting with watch lists.
Author: Joseph Blubaugh
Maintainer: Joseph Blubaugh <jestonblu@gmail.com>
Diff between RobinHood versions 1.2.4 dated 2020-03-25 and 1.4 dated 2020-05-23
RobinHood-1.2.4/RobinHood/R/api_option_instruments.R |only RobinHood-1.2.4/RobinHood/R/api_option_positions.R |only RobinHood-1.2.4/RobinHood/man/api_option_instruments.Rd |only RobinHood-1.2.4/RobinHood/man/api_option_positions.Rd |only RobinHood-1.4/RobinHood/DESCRIPTION | 8 - RobinHood-1.4/RobinHood/MD5 | 94 +++++++----- RobinHood-1.4/RobinHood/NAMESPACE | 11 + RobinHood-1.4/RobinHood/R/RobinHood.R | 4 RobinHood-1.4/RobinHood/R/api_ach.R |only RobinHood-1.4/RobinHood/R/api_contracts.R |only RobinHood-1.4/RobinHood/R/api_endpoints.R | 11 + RobinHood-1.4/RobinHood/R/api_instruments_options.R |only RobinHood-1.4/RobinHood/R/api_marketdata.R |only RobinHood-1.4/RobinHood/R/api_markets.R | 4 RobinHood-1.4/RobinHood/R/api_orders.R | 38 ++-- RobinHood-1.4/RobinHood/R/api_orders_crypto.R | 34 +--- RobinHood-1.4/RobinHood/R/api_orders_options.R |only RobinHood-1.4/RobinHood/R/api_positions.R | 2 RobinHood-1.4/RobinHood/R/api_positions_crypto.R | 5 RobinHood-1.4/RobinHood/R/api_positions_options.R |only RobinHood-1.4/RobinHood/R/api_quote.R | 3 RobinHood-1.4/RobinHood/R/cancel_ach_tranfer.R |only RobinHood-1.4/RobinHood/R/cancel_order.R | 8 - RobinHood-1.4/RobinHood/R/cancel_order_crypto.R | 17 +- RobinHood-1.4/RobinHood/R/cancel_order_options.R |only RobinHood-1.4/RobinHood/R/check_rh.R | 2 RobinHood-1.4/RobinHood/R/get_ach.R |only RobinHood-1.4/RobinHood/R/get_contracts.R |only RobinHood-1.4/RobinHood/R/get_fundamentals.R | 115 +++++++-------- RobinHood-1.4/RobinHood/R/get_historicals.R | 16 +- RobinHood-1.4/RobinHood/R/get_market_hours.R | 23 +-- RobinHood-1.4/RobinHood/R/get_order_history_crypto.R | 2 RobinHood-1.4/RobinHood/R/get_order_history_options.R |only RobinHood-1.4/RobinHood/R/get_order_status.R | 18 +- RobinHood-1.4/RobinHood/R/get_order_status_options.R |only RobinHood-1.4/RobinHood/R/get_positions_options.R |only RobinHood-1.4/RobinHood/R/get_quote.R | 23 --- RobinHood-1.4/RobinHood/R/mod_json.R | 2 RobinHood-1.4/RobinHood/R/place_ach_transfer.R |only RobinHood-1.4/RobinHood/R/place_order.R | 6 RobinHood-1.4/RobinHood/R/place_order_crypto.R | 5 RobinHood-1.4/RobinHood/R/place_order_options.R |only RobinHood-1.4/RobinHood/man/api_ach.Rd |only RobinHood-1.4/RobinHood/man/api_contracts.Rd |only RobinHood-1.4/RobinHood/man/api_instruments_options.Rd |only RobinHood-1.4/RobinHood/man/api_marketdata.Rd |only RobinHood-1.4/RobinHood/man/api_orders.Rd | 7 RobinHood-1.4/RobinHood/man/api_orders_options.Rd |only RobinHood-1.4/RobinHood/man/api_positions_options.Rd |only RobinHood-1.4/RobinHood/man/cancel_ach_transfer.Rd |only RobinHood-1.4/RobinHood/man/cancel_order.Rd | 6 RobinHood-1.4/RobinHood/man/cancel_order_crypto.Rd | 13 - RobinHood-1.4/RobinHood/man/cancel_order_options.Rd |only RobinHood-1.4/RobinHood/man/get_ach.Rd |only RobinHood-1.4/RobinHood/man/get_contracts.Rd |only RobinHood-1.4/RobinHood/man/get_historicals.Rd | 4 RobinHood-1.4/RobinHood/man/get_market_hours.Rd | 4 RobinHood-1.4/RobinHood/man/get_order_history_options.Rd |only RobinHood-1.4/RobinHood/man/get_order_status.Rd | 6 RobinHood-1.4/RobinHood/man/get_order_status_options.Rd |only RobinHood-1.4/RobinHood/man/get_positions_options.Rd |only RobinHood-1.4/RobinHood/man/place_ach_transfer.Rd |only RobinHood-1.4/RobinHood/man/place_order.Rd | 6 RobinHood-1.4/RobinHood/man/place_order_crypto.Rd | 5 RobinHood-1.4/RobinHood/man/place_order_options.Rd |only 65 files changed, 281 insertions(+), 221 deletions(-)
Title: 'Rcpp' Bindings for the 'simdjson' Header-Only Library for
'JSON' Parsing
Description: The 'JSON' format is ubiquitous for data interchange, and the
'simdjson' library written by Daniel Lemire (and many contributors) provides
a high-performance parser for these files which by relying on parallel 'SIMD'
instruction manages to parse these files as faster than disk speed. See the
<arXiv:1902.08318> paper for more details about 'simdjson'. This package is
at present only a very thin and incomplete wrapper and does not aim to replace
the existing and excellent 'JSON' packages for R. But it does already validate
orders of magnitude faster.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSimdJson versions 0.0.4 dated 2020-04-03 and 0.0.5 dated 2020-05-23
ChangeLog | 22 DESCRIPTION | 8 MD5 | 23 R/RcppExports.R | 14 README.md | 10 build/partial.rdb |binary cleanup | 2 inst/NEWS.Rd | 8 inst/include/simdjson.cpp |12438 ++++++++++++++++++++++++---------------------- inst/include/simdjson.h | 6135 +++++++++++++++------- man/parseExample.Rd |only src/RcppExports.cpp | 10 src/simdjson_example.cpp | 52 13 files changed, 10731 insertions(+), 7991 deletions(-)
Title: Robust Tests for Equal Correlation
Description: There are 6 novel robust tests for equal correlation. They are all based on logistic regressions. U are proportion to different types of correlation in 6 methods. The ST1() is based on Pearson correlation. ST2() improved ST1() by using median absolute deviation. ST3() utilized type M correlation and ST4() used Spearman correlation. ST5() and ST6() used two different ways to combine ST3() and ST4(). We highly recommend ST5() according to the passage New Statistical Methods for Constructing Robust Differential Correlation Networks to characterize the interactions among microRNAs published in Scientific Reports.
Author: Danyang Yu, Weiliang Qiu, Zeyu Zhang, Kimberly Glass, Jessica Su, Dawn L. DeMeo, Kelan Tantisira, Scott T. Weiss
Maintainer: Danyang Yu <dyu33@jhu.edu>
Diff between corTest versions 0.9.8 dated 2019-03-11 and 1.0.0 dated 2020-05-23
DESCRIPTION | 8 +-- MD5 | 16 +++--- R/corTest.R | 148 +++++++++++++++++++++++++++++++++--------------------------- man/st1.Rd | 2 man/st2.Rd | 2 man/st3.Rd | 2 man/st4.Rd | 2 man/st5.Rd | 2 man/st6.Rd | 2 9 files changed, 100 insertions(+), 84 deletions(-)
Title: Keyword Assisted Topic Model
Description: Fits keyword assisted topic models (keyATM) using collapsed Gibbs samplers. The keyATM combines the latent dirichlet allocation (LDA) models with a small number of keywords selected by researchers in order to improve the interpretability and topic classification of the LDA. The keyATM can also incorporate covariates and directly model time trends. The keyATM is proposed in Eshima, Imai, and Sasaki (2020) <arXiv:2004.05964>.
Author: Shusei Eshima [aut, cre] (<https://orcid.org/0000-0003-3613-4046>),
Tomoya Sasaki [aut],
William Lowe [ctb],
Kosuke Imai [aut]
Maintainer: Shusei Eshima <shuseieshima@g.harvard.edu>
Diff between keyATM versions 0.1.0 dated 2020-04-15 and 0.2.0 dated 2020-05-23
keyATM-0.1.0/keyATM/man/save.keyATM_viz.Rd |only keyATM-0.1.0/keyATM/man/save_fig.keyATM_viz.Rd |only keyATM-0.2.0/keyATM/DESCRIPTION | 15 - keyATM-0.2.0/keyATM/MD5 | 120 +++++++----- keyATM-0.2.0/keyATM/NAMESPACE | 14 - keyATM-0.2.0/keyATM/NEWS.md |only keyATM-0.2.0/keyATM/R/RcppExports.R | 19 + keyATM-0.2.0/keyATM/R/keyATM.R | 97 +++++---- keyATM-0.2.0/keyATM/R/keyATMvb.R |only keyATM-0.2.0/keyATM/R/model.R | 130 +++++-------- keyATM-0.2.0/keyATM/R/plots.R | 234 ++++++++++++++++++------ keyATM-0.2.0/keyATM/R/posterior.R | 153 +++++++-------- keyATM-0.2.0/keyATM/R/zzz.R | 2 keyATM-0.2.0/keyATM/inst |only keyATM-0.2.0/keyATM/man/by_strata_DocTopic.Rd | 17 + keyATM-0.2.0/keyATM/man/by_strata_TopicWord.Rd | 4 keyATM-0.2.0/keyATM/man/covariates_get.Rd |only keyATM-0.2.0/keyATM/man/covariates_info.Rd |only keyATM-0.2.0/keyATM/man/keyATM-package.Rd | 2 keyATM-0.2.0/keyATM/man/keyATM.Rd | 113 +++++------ keyATM-0.2.0/keyATM/man/keyATM_data_bills.Rd | 12 - keyATM-0.2.0/keyATM/man/keyATM_output.Rd | 4 keyATM-0.2.0/keyATM/man/keyATM_read.Rd | 7 keyATM-0.2.0/keyATM/man/keyATMvb.Rd |only keyATM-0.2.0/keyATM/man/keyATMvb_call.Rd |only keyATM-0.2.0/keyATM/man/keyATMvb_fit.Rd |only keyATM-0.2.0/keyATM/man/make_wsz_cpp.Rd |only keyATM-0.2.0/keyATM/man/plot.strata_doctopic.Rd | 28 ++ keyATM-0.2.0/keyATM/man/plot_alpha.Rd | 13 - keyATM-0.2.0/keyATM/man/plot_modelfit.Rd | 9 keyATM-0.2.0/keyATM/man/plot_pi.Rd | 9 keyATM-0.2.0/keyATM/man/plot_timetrend.Rd |only keyATM-0.2.0/keyATM/man/save.keyATM_output.Rd | 7 keyATM-0.2.0/keyATM/man/save_fig.Rd |only keyATM-0.2.0/keyATM/man/top_docs.Rd | 4 keyATM-0.2.0/keyATM/man/top_topics.Rd | 4 keyATM-0.2.0/keyATM/man/top_words.Rd | 10 - keyATM-0.2.0/keyATM/man/values_fig.Rd |only keyATM-0.2.0/keyATM/man/visualize_keywords.Rd | 22 -- keyATM-0.2.0/keyATM/man/weightedLDA.Rd | 84 ++++---- keyATM-0.2.0/keyATM/src/LDA_base.cpp | 8 keyATM-0.2.0/keyATM/src/LDA_base.h | 8 keyATM-0.2.0/keyATM/src/LDA_weight.cpp | 7 keyATM-0.2.0/keyATM/src/LDA_weight.h | 6 keyATM-0.2.0/keyATM/src/LDA_weightCov.cpp | 8 keyATM-0.2.0/keyATM/src/LDA_weightCov.h | 2 keyATM-0.2.0/keyATM/src/LDA_weightHMM.cpp | 14 + keyATM-0.2.0/keyATM/src/LDA_weightHMM.h | 2 keyATM-0.2.0/keyATM/src/RcppExports.cpp | 26 ++ keyATM-0.2.0/keyATM/src/initialize.cpp |only keyATM-0.2.0/keyATM/src/initialize.h |only keyATM-0.2.0/keyATM/src/keyATM_HMM.cpp | 60 +++--- keyATM-0.2.0/keyATM/src/keyATM_HMM.h | 23 -- keyATM-0.2.0/keyATM/src/keyATM_base.cpp | 23 +- keyATM-0.2.0/keyATM/src/keyATM_base.h | 10 - keyATM-0.2.0/keyATM/src/keyATM_cov.cpp | 28 ++ keyATM-0.2.0/keyATM/src/keyATM_cov.h | 19 - keyATM-0.2.0/keyATM/src/keyATM_label.cpp | 13 - keyATM-0.2.0/keyATM/src/keyATM_label.h | 7 keyATM-0.2.0/keyATM/src/keyATM_meta.cpp | 94 ++++++--- keyATM-0.2.0/keyATM/src/keyATM_meta.h | 78 +++----- keyATM-0.2.0/keyATM/src/keyATMvb_call.cpp |only keyATM-0.2.0/keyATM/src/keyATMvb_main.cpp |only keyATM-0.2.0/keyATM/src/keyATMvb_main.h |only keyATM-0.2.0/keyATM/src/sampler.cpp | 109 +++++++---- keyATM-0.2.0/keyATM/src/sampler.h | 10 - keyATM-0.2.0/keyATM/src/train.cpp | 1 keyATM-0.2.0/keyATM/tests |only 68 files changed, 1001 insertions(+), 688 deletions(-)
Title: Graphical User Interface for Data Science in R
Description: The R Analytic Tool To Learn Easily (Rattle) provides a
collection of utilities functions for the data scientist. A
Gnome (RGtk2) based graphical interface is included with
the aim to provide a simple and intuitive introduction to R
for data science, allowing a user to quickly load data from a CSV file
(or via ODBC), transform and explore the data,
build and evaluate models, and export models as PMML (predictive
modelling markup language) or as scores. A key aspect of the GUI
is that all R commands are logged and commented through the log tab.
This can be saved as a standalone R script file and as
an aid for the user to
learn R or to copy-and-paste directly into R itself.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] (OOB AUC for Random Forest),
Brian Ripley [cph] (print.summary.nnet),
Jose Magana [ctb] (ggpairs plots),
Surendra Tipparaju [ctb] (initial RevoScaleR/XDF),
Durga Prasad Chappidi [ctb] (initial RevoScaleR/XDF),
Dinesh Manyam Venkata [ctb] (initial RevoScaleR/XDF),
Mrinal Chakraborty [ctb] (initial RevoScaleR/XDF),
Fang Zhou [ctb] (initial xgboost),
Cameron Chisholm [ctb] (risk plot on risk chart)
Maintainer: Graham Williams <Graham.Williams@togaware.com>
Diff between rattle versions 5.3.0 dated 2019-12-16 and 5.4.0 dated 2020-05-23
rattle-5.3.0/rattle/data/datalist |only rattle-5.4.0/rattle/DESCRIPTION | 26 rattle-5.4.0/rattle/MD5 | 47 - rattle-5.4.0/rattle/NAMESPACE | 3 rattle-5.4.0/rattle/R/asRules.rpart.R | 56 +- rattle-5.4.0/rattle/R/data.R | 42 + rattle-5.4.0/rattle/R/evaluate.R | 84 ++- rattle-5.4.0/rattle/R/executeModelRF.R | 6 rattle-5.4.0/rattle/R/export.R | 154 +++-- rattle-5.4.0/rattle/R/ggVarImp.R | 18 rattle-5.4.0/rattle/R/normVarNames.R | 4 rattle-5.4.0/rattle/R/rattle.R | 12 rattle-5.4.0/rattle/R/riskchart.R | 2 rattle-5.4.0/rattle/R/xgb.R | 50 - rattle-5.4.0/rattle/R/zzz.R | 8 rattle-5.4.0/rattle/build/vignette.rds |binary rattle-5.4.0/rattle/data/locationsAUS.RData |binary rattle-5.4.0/rattle/data/weather.RData |binary rattle-5.4.0/rattle/data/weatherAUS.RData |binary rattle-5.4.0/rattle/inst/NEWS | 19 rattle-5.4.0/rattle/inst/arff/weather.arff | 736 ++++++++++++++-------------- rattle-5.4.0/rattle/inst/doc/rattle.pdf |binary rattle-5.4.0/rattle/inst/etc/rattle.ui | 2 rattle-5.4.0/rattle/man/asRules.rpart.Rd | 6 rattle-5.4.0/rattle/man/weatherAUS.Rd | 9 25 files changed, 713 insertions(+), 571 deletions(-)
Title: RF Variable Importance for Arbitrary Measures
Description: Computes the random forest variable importance (VIMP) for the conditional inference random forest (cforest) of the 'party' package. Includes a function (varImp) that computes the VIMP for arbitrary measures from the 'measures' package. For calculating the VIMP regarding the measures accuracy and AUC two extra functions exist (varImpACC and varImpAUC).
Author: Philipp Probst [aut, cre],
Silke Janitza [ctb]
Maintainer: Philipp Probst <philipp_probst@gmx.de>
Diff between varImp versions 0.3 dated 2019-05-03 and 0.4 dated 2020-05-23
DESCRIPTION | 10 +-- MD5 | 20 +++---- NAMESPACE | 2 R/varImp.R | 4 + R/varImpAUC.R | 2 README.md | 4 + man/varImp.Rd | 116 +++++++++++++++++++++++-------------------- man/varImpACC.Rd | 103 ++++++++++++++++++++------------------ man/varImpAUC.Rd | 119 +++++++++++++++++++++++---------------------- man/varImpRanger.Rd | 67 ++++++++++++------------- tests/testthat/test_base.R | 1 11 files changed, 239 insertions(+), 209 deletions(-)
Title: A Framework for Investment Strategy Simulation
Description: Provides a framework for performing discrete (share-level) simulations of
investment strategies. Simulated portfolios optimize exposure to an input signal subject
to constraints such as position size and factor exposure.
Author: Jeff Enos [cre, aut],
David Kane [aut],
Strand Technologies, Inc. [cph]
Maintainer: Jeff Enos <jeff@strand.tech>
Diff between strand versions 0.1.1 dated 2020-05-18 and 0.1.2 dated 2020-05-23
strand-0.1.1/strand/inst/application/strategy_config_obj.yaml |only strand-0.1.2/strand/DESCRIPTION | 14 +- strand-0.1.2/strand/MD5 | 33 ++-- strand-0.1.2/strand/NAMESPACE | 3 strand-0.1.2/strand/NEWS.md | 13 + strand-0.1.2/strand/R/PortOpt.R | 2 strand-0.1.2/strand/R/Simulation.R | 67 ++++++---- strand-0.1.2/strand/R/examples.R |only strand-0.1.2/strand/R/strand.R | 1 strand-0.1.2/strand/README.md | 62 +++++++-- strand-0.1.2/strand/inst/application/server.R | 9 + strand-0.1.2/strand/inst/application/strategy_config.yaml | 15 -- strand-0.1.2/strand/inst/application/strategy_config_file_inputs.yaml |only strand-0.1.2/strand/inst/application/ui.R | 19 +- strand-0.1.2/strand/inst/doc/strand.Rmd | 4 strand-0.1.2/strand/inst/doc/strand.html | 4 strand-0.1.2/strand/man/Simulation.Rd | 48 ++++--- strand-0.1.2/strand/man/example_shiny_app.Rd |only strand-0.1.2/strand/man/example_strategy_config.Rd |only strand-0.1.2/strand/vignettes/strand.Rmd | 4 20 files changed, 194 insertions(+), 104 deletions(-)
Title: Download, Compile and Link 'OpenBLAS' Library with R
Description: The 'ropenblas' package (<https://prdm0.github.io/ropenblas/>) is useful for users of any 'GNU/Linux' distribution. It will be possible to download, compile and link the 'OpenBLAS' library (<https://www.openblas.net/>) with the R language, always by the same procedure, regardless of the 'GNU/Linux' distribution used. With the 'ropenblas' package it is possible to download, compile and link the latest version of the 'OpenBLAS' library even the repositories of the 'GNU/Linux' distribution used do not include the latest versions of 'OpenBLAS'. If of interest, older versions of the 'OpenBLAS' library may be considered. Linking R with an optimized version of 'BLAS' (<http://www.netlib.org/blas/>) may improve the computational performance of R code. The 'OpenBLAS' library is an optimized implementation of 'BLAS' that can be easily linked to R with the 'ropenblas' package.
Author: Pedro Rafael D. Marinho [aut, cre]
Maintainer: Pedro Rafael D. Marinho <pedro.rafael.marinho@gmail.com>
Diff between ropenblas versions 0.2.5 dated 2020-05-18 and 0.2.6 dated 2020-05-23
DESCRIPTION | 10 +- MD5 | 8 - NAMESPACE | 1 NEWS.md | 8 + R/ropenblas.R | 239 ++++++++++++++++++++++++++++++++++------------------------ 5 files changed, 159 insertions(+), 107 deletions(-)
Title: Highest (Posterior) Density Intervals
Description: A generic function and a set of methods to calculate highest density intervals for a variety of classes of objects which can specify a probability density distribution, including MCMC output, fitted density objects, and functions.
Author: Mike Meredith and John Kruschke
Maintainer: Mike Meredith <mike@mmeredith.net>
Diff between HDInterval versions 0.2.0 dated 2018-06-09 and 0.2.2 dated 2020-05-23
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS | 15 ++++++++++++--- R/hdiVector.R | 10 ++++++++-- R/inverseCDF.R | 4 +++- inst/tests/testthat/test-hdi.R | 6 ++++++ inst/tests/testthat/test-inverseCDF.R | 5 +++++ man/inverseCDF.Rd | 6 ++++-- 8 files changed, 50 insertions(+), 20 deletions(-)
Title: Easily Create Presentation-Ready Display Tables
Description: Build display tables from tabular data with an easy-to-use set of
functions. With its progressive approach, we can construct display tables
with a cohesive set of table parts. Table values can be formatted using any
of the included formatting functions. Footnotes and cell styles can be
precisely added through a location targeting system. The way in which 'gt'
handles things for you means that you don't often have to worry about the
fine details.
Author: Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>),
Joe Cheng [aut],
Barret Schloerke [aut] (<https://orcid.org/0000-0001-9986-114X>),
RStudio [cph, fnd]
Maintainer: Richard Iannone <rich@rstudio.com>
Diff between gt versions 0.2.0.5 dated 2020-03-31 and 0.2.1 dated 2020-05-23
DESCRIPTION | 19 ++-- MD5 | 37 ++++---- NEWS.md | 10 ++ R/dt_styles.R | 14 +-- R/dt_summary.R | 22 ++-- R/export.R | 3 R/format_data.R | 2 R/shiny.R | 8 - README.md | 23 +++-- man/figures/countrypops.png |only man/figures/exibble.svg |only man/figures/gtcars.svg |only man/figures/pizzaplace.svg |only man/figures/sp500.svg |only man/figures/sza.svg |only man/figures/tables_from_the_web.png |only man/fmt_percent.Rd | 2 man/gt-package.Rd | 11 +- man/gt_output.Rd | 4 man/gtsave.Rd | 4 man/render_gt.Rd | 4 tests/testthat/test-data_color.R | 12 -- tests/testthat/test-summary_rows.R | 159 ++++++++++++++++++++++++++++++++++++ 23 files changed, 257 insertions(+), 77 deletions(-)
Title: Toolkit for Credit Modeling, Analysis and Visualization
Description: Provides a highly efficient R tool suite for Credit Modeling, Analysis and Visualization. Contains infrastructure functionalities such as data exploration and preparation, missing values treatment, outliers treatment, variable derivation, variable selection, dimensionality reduction, grid search for hyper parameters, data mining and visualization, model evaluation, strategy analysis etc. This package is designed to make the development of binary classification models (machine learning based models as well as credit scorecard) simpler and faster.
Author: Dongping Fan [aut, cre]
Maintainer: Dongping Fan <fdp@pku.edu.cn>
Diff between creditmodel versions 1.2 dated 2020-04-28 and 1.2.1 dated 2020-05-23
DESCRIPTION | 10 ++-- MD5 | 60 ++++++++++++++------------- NAMESPACE | 2 NEWS.md | 10 ++++ R/data_anaylsis.R | 89 ++++++++++++++++++++++++++++++++++++----- R/data_cleansing.R | 16 ++++--- R/data_process_tools.R | 1 R/data_visualization.R | 31 ++++++-------- R/model_training.R | 38 ++++++++++------- R/outliers_missing_treatment.R | 58 +++++++++++++++++--------- R/variable_binning.R | 2 R/variable_selection.R | 8 +-- inst/doc/introduction.html | 86 +++++++++++++++++++-------------------- man/check_rules.Rd | 2 man/customer_segmentation.Rd | 2 man/fuzzy_cluster_means.Rd | 4 - man/get_breaks_all.Rd | 4 - man/get_ctree_rules.Rd | 2 man/get_tree_breaks.Rd | 2 man/knn_nas_imp.Rd | 5 +- man/lasso_filter.Rd | 2 man/low_variance_filter.Rd | 5 +- man/lr_params.Rd | 8 +-- man/multi_grid.Rd | 2 man/plot_oot_perf.Rd | 2 man/process_nas.Rd | 12 +++-- man/psi_iv_filter.Rd | 4 - man/rule_value_replace.Rd |only man/rules_filter.Rd | 2 man/rules_result.Rd |only man/train_lr.Rd | 8 +-- man/training_model.Rd | 12 ++++- 32 files changed, 309 insertions(+), 180 deletions(-)
Title: Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Description: The Bayesian optimal interval (BOIN) design is a novel phase I
clinical trial design for finding the maximum tolerated dose (MTD). It can be
used to design both single-agent and drug-combination trials. The BOIN design
is motivated by the top priority and concern of clinicians when testing a new
drug, which is to effectively treat patients and minimize the chance of exposing
them to subtherapeutic or overly toxic doses. The prominent advantage of the
BOIN design is that it achieves simplicity and superior performance at the same
time. The BOIN design is algorithm-based and can be implemented in a simple
way similar to the traditional 3+3 design. The BOIN design yields an average
performance that is comparable to that of the continual reassessment method
(CRM, one of the best model-based designs) in terms of selecting the MTD, but
has a substantially lower risk of assigning patients to subtherapeutic or overly
toxic doses.
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan <yyuan@mdanderson.org>
Diff between BOIN versions 2.6.5 dated 2020-05-20 and 2.6.6 dated 2020-05-23
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/get.oc.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: R Client for the Microsoft Cognitive Services 'Text-to-Speech'
REST API
Description: R Client for the Microsoft Cognitive Services
'Text-to-Speech' REST API, including voice synthesis. A valid account
must be registered at the Microsoft Cognitive Services website
<https://www.microsoft.com/cognitive-services/> in order to
obtain a (free) API key. Without an API key, this package will not
work properly.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between mscstts versions 0.5.4 dated 2020-05-20 and 0.5.5 dated 2020-05-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/ms_locales.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Statistical Modelling for Plant Size Distributions
Description: Developed for the following tasks . I ) Computing the probability density function ,
cumulative distribution function , random generation , and estimating the parameters
of the eleven mixture models . II ) Point estimation of the parameters of two -
parameter Weibull distribution using twelve methods and three - parameter Weibull
distribution using nine methods . III ) The Bayesian estimators of the three -
parameter Weibull distribution . IV ) Estimating parameters of the three - parameter
Birnbaum - Saunders , generalized exponential , and Weibull distributions fitted to
grouped data using three methods including approximated maximum likelihood ,
expectation maximization , and maximum likelihood . V ) Estimating the parameters
of the gamma , log-normal , and Weibull mixture models fitted to the grouped data
through the EM algorithm , VI ) Estimating parameters of the nonlinear height curve
fitted to the height - diameter observation , VII ) Estimating parameters , computing
probability density function , cumulative distribution function , and generating
realizations from gamma shape mixture model introduced by Venturini et al. (2008)
<doi:10.1214/07-AOAS156> , and VIII ) Robust multiple linear regression analysis when
error term follows skewed t distribution .
Author: Mahdi Teimouri
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between ForestFit versions 0.5.7 dated 2020-02-13 and 0.5.8 dated 2020-05-23
DESCRIPTION | 28 ++++-- MD5 | 17 +-- NAMESPACE | 10 -- R/ForestFit.R | 226 +++++++++++++++++++++++++++++++++++++++++++++++++ man/DBH.Rd | 5 - man/HW.Rd | 3 man/SW.Rd | 3 man/fitbayesJSB.Rd | 3 man/fitbayesWeibull.Rd | 2 man/skewtreg.Rd |only 10 files changed, 262 insertions(+), 35 deletions(-)
Title: Easily Scrape and Process AFL Data
Description: An easy package for scraping and processing Australia Rules Football (AFL)
data. 'fitzRoy' provides a range of functions for accessing publicly available data
from 'AFL Tables' <https://afltables.com>, 'Footy Wire' <https://www.footywire.com> and
'The Squiggle' <https://squiggle.com.au>. Further functions allow for easy processing,
cleaning and transformation of this data into formats that can be used for analysis.
Author: James Day [cre, aut],
Robert Nguyen [aut],
Matthew Erbs [ctb],
Oscar Lane [aut],
Jason Zivkovic [ctb]
Maintainer: James Day <jamesthomasday@gmail.com>
Diff between fitzRoy versions 0.3.1 dated 2020-01-21 and 0.3.2 dated 2020-05-23
DESCRIPTION | 13 ++++---- MD5 | 38 +++++++++++------------ NEWS.md | 11 ++++++ R/afltables_player.R | 11 ++++-- R/footywire-calcs.R | 33 +++++++++++++++----- R/womens_stats.R | 9 ++--- README.md | 11 ++++-- build/vignette.rds |binary inst/doc/elo-ratings-example.R | 28 ++++++++--------- inst/doc/elo-ratings-example.html | 26 +++++++++------- inst/doc/mens-stats.R | 50 +++++++++++++++---------------- inst/doc/mens-stats.html | 26 +++++++++------- inst/doc/womens-stats.R | 16 ++++----- inst/doc/womens-stats.html | 2 - man/figures/fitz_hex.png |binary man/fitzRoy-package.Rd | 1 tests/testthat/test-afltables_player.R | 18 +++++++++++ tests/testthat/test-footywire.R | 32 ++++++++++++++++++- tests/testthat/test-squiggle-api-works.R | 6 --- tests/testthat/test-womens_stats.R | 17 +++------- 20 files changed, 214 insertions(+), 134 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'BigCamelCase' style was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell [aut, cre],
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico Caeiro [ctb],
Stephane Champely [ctb],
Daniel Chessel [ctb],
Leanne Chhay [ctb],
Clint Cummins [ctb],
Michael Dewey [ctb],
Harold C. Doran [ctb],
Stephane Dray [ctb],
Charles Dupont [ctb],
Dirk Eddelbuettel [ctb],
Jeff Enos [ctb],
Claus Ekstrom [ctb],
Martin Elff [ctb],
Kamil Erguler [ctb],
Richard W. Farebrother [ctb],
John Fox [ctb],
Romain Francois [ctb],
Michael Friendly [ctb],
Tal Galili [ctb],
Matthias Gamer [ctb],
Joseph L. Gastwirth [ctb],
Yulia R. Gel [ctb],
Vilmantas Gegzna [ctb],
Juergen Gross [ctb],
Gabor Grothendieck [ctb],
Frank E. Harrell Jr [ctb],
Richard Heiberger [ctb],
Michael Hoehle [ctb],
Christian W. Hoffmann [ctb],
Soeren Hojsgaard [ctb],
Torsten Hothorn [ctb],
Markus Huerzeler [ctb],
Wallace W. Hui [ctb],
Pete Hurd [ctb],
Rob J. Hyndman [ctb],
Pablo J. Villacorta Iglesias [ctb],
Christopher Jackson [ctb],
Matthias Kohl [ctb],
Mikko Korpela [ctb],
Max Kuhn [ctb],
Detlew Labes [ctb],
Duncan Temple Lang [ctb],
Friederich Leisch [ctb],
Jim Lemon [ctb],
Dong Li [ctb],
Martin Maechler [ctb],
Arni Magnusson [ctb],
Daniel Malter [ctb],
George Marsaglia [ctb],
John Marsaglia [ctb],
Alina Matei [ctb],
David Meyer [ctb],
Weiwen Miao [ctb],
Giovanni Millo [ctb],
Yongyi Min [ctb],
David Mitchell [ctb],
Franziska Mueller [ctb],
Markus Naepflin [ctb],
Daniel Navarro [ctb],
Henric Nilsson [ctb],
Klaus Nordhausen [ctb],
Derek Ogle [ctb],
Hong Ooi [ctb],
Nick Parsons [ctb],
Sandrine Pavoine [ctb],
Tony Plate [ctb],
Roland Rapold [ctb],
William Revelle [ctb],
Tyler Rinker [ctb],
Brian D. Ripley [ctb],
Caroline Rodriguez [ctb],
Nathan Russell [ctb],
Nick Sabbe [ctb],
Venkatraman E. Seshan [ctb],
Greg Snow [ctb],
Michael Smithson [ctb],
Karline Soetaert [ctb],
Werner A. Stahel [ctb],
Alec Stephenson [ctb],
Mark Stevenson [ctb],
Ralf Stubner [ctb],
Matthias Templ [ctb],
Terry Therneau [ctb],
Yves Tille [ctb],
Luis Torgo [ctb],
Adrian Trapletti [ctb],
Joshua Ulrich [ctb],
Kevin Ushey [ctb],
Jeremy VanDerWal [ctb],
Bill Venables [ctb],
John Verzani [ctb],
Gregory R. Warnes [ctb],
Stefan Wellek [ctb],
Hadley Wickham [ctb],
Rand R. Wilcox [ctb],
Peter Wolf [ctb],
Daniel Wollschlaeger [ctb],
Joseph Wood [ctb],
Ying Wu [ctb],
Thomas Yee [ctb],
Achim Zeileis [ctb]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.35 dated 2020-04-30 and 0.99.36 dated 2020-05-23
DESCRIPTION | 11 MD5 | 34 - NAMESPACE | 3 NEWS | 26 + R/Desc.R | 96 +++-- R/DescTools.r | 871 ++++++++++++++--------------------------------- R/Dialogs.r | 3 R/LinMod.R | 35 + R/StatsAndCIs.r | 179 +++++++-- R/Tests.r | 27 + R/Utils.R | 1 man/DescTools-package.Rd | 2 man/OddsRatio.Rd | 2 man/Rev.Rd | 40 +- man/ScheffeTest.Rd | 14 man/SetNames.Rd | 9 man/SpearmanRho.Rd | 19 - man/UnirootAll.Rd | 4 18 files changed, 644 insertions(+), 732 deletions(-)
Title: Authentication Services for Azure Active Directory
Description: Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
httr development team [ctb] (Original OAuth listener code),
Scott Holden [ctb] (Advice on AAD authentication),
Chris Stone [ctb] (Advice on AAD authentication),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureAuth versions 1.2.3 dated 2019-11-12 and 1.2.4 dated 2020-05-23
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/token.R | 2 +- R/utils.R | 2 +- build/vignette.rds |binary inst/doc/shiny.Rmd | 5 ++++- inst/doc/shiny.html | 37 ++++++++++++++++++++++--------------- inst/doc/token.html | 22 +++++++++++++--------- man/get_azure_token.Rd | 2 +- vignettes/shiny.Rmd | 5 ++++- 11 files changed, 64 insertions(+), 42 deletions(-)
Title: Assistance on the National Geography of Japan
Description: Data set on Japan's national geography.
Provides tools for efficient processing and visualization of
unique coordinate systems.
Author: Shinya Uryu [aut, cre] (<https://orcid.org/0000-0002-0493-6186>),
Geospatial Information Authority of Japan [cph] (Author of Global Map
Japan Data)
Maintainer: Shinya Uryu <suika1127@gmail.com>
Diff between kuniezu versions 0.1.0 dated 2020-05-08 and 0.1.1 dated 2020-05-23
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- NEWS.md | 4 ++++ README.md | 11 ++++++++--- 4 files changed, 22 insertions(+), 13 deletions(-)
Title: Analysis of Longitudinal Data with Irregular Observation Times
Description: Analysis of longitudinal data for which the times of observation are random variables that are potentially associated with the outcome process. The package includes inverse-intensity weighting methods (Lin H, Scharfstein DO, Rosenheck RA (2004) <doi:10.1111/j.1467-9868.2004.b5543.x>) and multiple outputation (Pullenayegum EM (2016) <doi:10.1002/sim.6829>).
Author: Eleanor Pullenayegum
Maintainer: Eleanor Pullenayegum <eleanor.pullenayegum@sickkids.ca>
Diff between IrregLong versions 0.3.0 dated 2020-05-01 and 0.3.1 dated 2020-05-23
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/IIWcode.R | 18 +++++++++--------- inst/doc/Irreglong-vignette.Rmd | 6 ++++-- inst/doc/Irreglong-vignette.html | 14 ++++++++------ man/Liang.Rd | 2 +- vignettes/Irreglong-vignette.Rmd | 6 ++++-- 7 files changed, 36 insertions(+), 30 deletions(-)