Title: Work with Hyperspectral Data, i.e. Spectra + Meta Information
(Spatial, Time, Concentration, ...)
Description: Comfortable ways to work with hyperspectral data sets.
I.e. spatially or time-resolved spectra, or spectra with any other kind
of information associated with each of the spectra. The spectra can be data
as obtained in XRF, UV/VIS, Fluorescence, AES, NIR, IR, Raman, NMR, MS,
etc. More generally, any data that is recorded over a discretized variable,
e.g. absorbance = f (wavelength), stored as a vector of absorbance values
for discrete wavelengths is suitable.
Author: Claudia Beleites [aut, cre, dtc],
Valter Sergo [aut],
Alois Bonifacio [ctb, dtc],
Marcel Dahms [ctb],
Björn Egert [ctb],
Simon Fuller [ctb],
Vilmantas Gegzna [ctb],
Rustam Guliev [ctb],
Bryan Hanson [ctb],
Michael Hermes [ctb],
Martin Kammer [dtc],
Roman Kiselev [ctb],
Sebastian Mellor [ctb]
Maintainer: Claudia Beleites <Claudia.Beleites@chemometrix.gmbh>
Diff between hyperSpec versions 0.99-20200213.1 dated 2020-04-01 and 0.99-20200527 dated 2020-05-28
DESCRIPTION | 53 +++++++++++++++++++++--------------------- MD5 | 55 +++++++++++++++++++++++--------------------- NAMESPACE | 1 R/apply.R | 5 +++- R/decomposition.R | 2 + R/fix_spc_colnames.R |only R/initialize.R | 6 ++-- R/read.spc.R | 27 +++++++++++++++++++++ R/read.spc.Shimadzu.R |only R/sysdata.rda |binary R/wl.R | 4 +-- data/barbiturates.rda |binary data/laser.rda |binary data/paracetamol.rda |binary inst/doc/baseline.pdf |binary inst/doc/chondro.pdf |binary inst/doc/fileio.pdf |binary inst/doc/fileio.pdf.asis | 2 - inst/doc/flu.pdf |binary inst/doc/hyperspec.pdf |binary inst/doc/laser.pdf |binary inst/doc/plotting.pdf |binary man/apply.Rd | 5 +++- man/barbiturates.Rd | 6 +++- man/chondro.Rd | 9 +++++-- man/dot-fix_spc_colnames.Rd |only man/flu.Rd | 6 +++- man/laser.Rd | 6 +++- man/paracetamol.Rd | 6 +++- vignettes/fileio.pdf.asis | 2 - 30 files changed, 124 insertions(+), 71 deletions(-)
Title: Create Elegant Data Visualisations Using the Grammar of Graphics
Description: A system for 'declaratively' creating graphics,
based on "The Grammar of Graphics". You provide the data, tell 'ggplot2'
how to map variables to aesthetics, what graphical primitives to use,
and it takes care of the details.
Author: Hadley Wickham [aut, cre],
Winston Chang [aut],
Lionel Henry [aut],
Thomas Lin Pedersen [aut],
Kohske Takahashi [aut],
Claus Wilke [aut],
Kara Woo [aut],
Hiroaki Yutani [aut],
Dewey Dunnington [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between ggplot2 versions 3.3.0 dated 2020-03-05 and 3.3.1 dated 2020-05-28
DESCRIPTION | 8 MD5 | 38 NEWS.md | 5 README.md | 2 build/vignette.rds |binary inst/doc/extending-ggplot2.html | 1500 +++++++++++++++++++------------------- inst/doc/ggplot2-in-packages.html | 238 +++--- inst/doc/ggplot2-specs.html | 220 ++--- man/diamonds.Rd | 6 man/economics.Rd | 8 man/faithfuld.Rd | 6 man/graphical-units.Rd | 6 man/luv_colours.Rd | 6 man/midwest.Rd | 6 man/mpg.Rd | 6 man/msleep.Rd | 6 man/presidential.Rd | 6 man/seals.Rd | 4 man/txhousing.Rd | 6 tests/testthat/Rplots.pdf |binary 20 files changed, 1057 insertions(+), 1020 deletions(-)
Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression and classification models
and get relevant evaluation metrics in a tidy format. Validate the
best model on a test set and compare it to a baseline evaluation.
Alternatively, evaluate predictions from an external model. Currently
supports regression and classification (binary and multiclass).
Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R.,
& Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre],
Benjamin Hugh Zachariae [aut]
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>
Diff between cvms versions 1.0.1 dated 2020-04-19 and 1.0.2 dated 2020-05-28
DESCRIPTION | 6 +-- MD5 | 46 ++++++++++++------------ NEWS.md | 4 ++ R/evaluate_predictions_multinomial.R | 9 ++++ R/evaluate_residuals.R | 10 +++++ R/fit_predict_model_fn.R | 1 R/helpers.R | 7 +++ R/run_prediction_process.R | 15 +++++++ R/validate_list.R | 2 - build/cvms.pdf |binary inst/doc/available_metrics.html | 4 +- inst/doc/creating_a_confusion_matrix.Rmd | 4 +- inst/doc/creating_a_confusion_matrix.html | 18 ++++----- inst/doc/cross_validating_custom_functions.Rmd | 7 +-- inst/doc/cross_validating_custom_functions.html | 24 ++++++------ inst/doc/evaluate_by_id.html | 10 ++--- tests/testthat/test_baseline.R | 10 +++-- tests/testthat/test_compational_grid.R | 2 - tests/testthat/test_cross_validate_fn.R | 18 ++++----- tests/testthat/test_evaluate.R | 16 ++++---- tests/testthat/test_select_metrics.R | 6 ++- tests/testthat/test_validate_fn.R | 4 +- vignettes/creating_a_confusion_matrix.Rmd | 4 +- vignettes/cross_validating_custom_functions.Rmd | 7 +-- 24 files changed, 142 insertions(+), 92 deletions(-)
Title: Access the U.S. Census Bureau's Geocoding A.P.I. System
Description: Provides access to the U.S. Census Bureau's A.P.I for matching American
street addresses with their longitude and latitude. This includes both single address matching
as well as batch functionality for multiple addresses. Census geographies can be appended to
addresses if desired, and reverse geocoding of point locations to census geographies is also
supported.
Author: Christopher Prener [aut, cre] (<https://orcid.org/0000-0002-4310-9888>),
Branson Fox [aut] (<https://orcid.org/0000-0002-4361-2811>)
Maintainer: Christopher Prener <chris.prener@slu.edu>
Diff between censusxy versions 0.1.2 dated 2019-08-09 and 1.0.0 dated 2020-05-28
censusxy-0.1.2/censusxy/R/cxy_geocode.R |only censusxy-0.1.2/censusxy/R/cxy_geocoder.R |only censusxy-0.1.2/censusxy/R/cxy_id.R |only censusxy-0.1.2/censusxy/R/cxy_prep.R |only censusxy-0.1.2/censusxy/R/cxy_replace.R |only censusxy-0.1.2/censusxy/R/cxy_split.R |only censusxy-0.1.2/censusxy/inst/extdata |only censusxy-0.1.2/censusxy/tests/testthat/test_cxy_geocode.R |only censusxy-1.0.0/censusxy/DESCRIPTION | 27 +- censusxy-1.0.0/censusxy/MD5 | 44 ++- censusxy-1.0.0/censusxy/NAMESPACE | 22 - censusxy-1.0.0/censusxy/NEWS.md | 13 + censusxy-1.0.0/censusxy/R/batch.R |only censusxy-1.0.0/censusxy/R/internal.R |only censusxy-1.0.0/censusxy/R/options.R |only censusxy-1.0.0/censusxy/R/single.R |only censusxy-1.0.0/censusxy/README.md | 50 +--- censusxy-1.0.0/censusxy/build/vignette.rds |binary censusxy-1.0.0/censusxy/inst/doc/censusxy.R | 2 censusxy-1.0.0/censusxy/inst/doc/censusxy.Rmd | 110 +++++++-- censusxy-1.0.0/censusxy/inst/doc/censusxy.html | 163 +++++++++----- censusxy-1.0.0/censusxy/man/cxy_benchmarks.Rd |only censusxy-1.0.0/censusxy/man/cxy_geocode.Rd | 82 ++++--- censusxy-1.0.0/censusxy/man/cxy_geography.Rd |only censusxy-1.0.0/censusxy/man/cxy_oneline.Rd |only censusxy-1.0.0/censusxy/man/cxy_single.Rd |only censusxy-1.0.0/censusxy/man/cxy_vintages.Rd |only censusxy-1.0.0/censusxy/man/stl_homicides.Rd | 6 censusxy-1.0.0/censusxy/man/stl_homicides_small.Rd | 6 censusxy-1.0.0/censusxy/tests/testthat/test_batch.R |only censusxy-1.0.0/censusxy/tests/testthat/test_options.R |only censusxy-1.0.0/censusxy/tests/testthat/test_single.R |only censusxy-1.0.0/censusxy/vignettes/censusxy.Rmd | 110 +++++++-- 33 files changed, 421 insertions(+), 214 deletions(-)
Title: Coarse Approximation Linear Function
Description: Forward selection linear regression greedy algorithm where selection is driven by optimization of Welch t-test p-value or AUC (binary dependent vector), or Pearson correlation (nonbinary). Functions now enabled include data outputs for permutation tests of several types plus cross-validation features. Please see preprint at <https://www.biorxiv.org/content/10.1101/2020.03.27.011700v1> or <doi:10.1101/2020.03.27.011700>.
Author: Stephanie Lane [aut, cre], John Ford [aut], Clark Jeffries [aut], Diana Perkins [aut]
Maintainer: John Ford <JoRuFo@gmail.com>
Diff between CALF versions 0.2.0 dated 2017-05-19 and 1.0.15 dated 2020-05-28
DESCRIPTION | 20 - MD5 | 30 + NAMESPACE | 9 R/CALF-data.R | 4 R/CALF-package.R | 39 +- R/calf_internal.R | 229 ++++++-------- R/calf_wrappers.R | 624 +++++++++++++++++++++++++++++++++++++--- R/print.calf.R | 22 + man/CALF-package.Rd | 70 ++-- man/CaseControl.Rd | 30 + man/calf.Rd | 67 ++-- man/calf_exact_binary_subset.Rd |only man/calf_fractional.Rd |only man/calf_randomize.Rd | 80 ++--- man/calf_subset.Rd | 83 ++--- man/cv.calf.Rd |only man/write.calf.Rd |only man/write.calf_randomize.Rd |only man/write.calf_subset.Rd |only 19 files changed, 945 insertions(+), 362 deletions(-)
Title: Fast Bayesian Inference in Large Gaussian Graphical Models
Description: Fast Bayesian inference of marginal and conditional independence structures from high-dimensional data. Leday and Richardson (2019), Biometrics, <doi:10.1111/biom.13064>.
Author: Gwenael G.R. Leday [cre, aut],
Ilaria Speranza [aut],
Harry Gray [ctb]
Maintainer: Gwenael G.R. Leday <gwenael.leday@wur.nl>
Diff between beam versions 2.0.1 dated 2020-01-28 and 2.0.2 dated 2020-05-28
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- NEWS.md | 12 +++++++++--- man/beam-class.Rd | 2 +- src/beam.cpp | 17 +++++++++++++++-- 5 files changed, 36 insertions(+), 17 deletions(-)
Title: Finding Rhythms Using Extended Circadian Harmonic Oscillators
(ECHO)
Description: Provides a function (echo_find()) designed to find rhythms
from data using extended harmonic oscillators. For more information,
see H. De los Santos et al. (2020) <doi:10.1093/bioinformatics/btz617> .
Author: Hannah De los Santos [aut, cre],
Emily Collins [aut],
Kristin Bennett [aut],
Jennifer Hurley [aut],
R Development Core Team [aut]
Maintainer: Hannah De los Santos <delosh@rpi.edu>
Diff between echo.find versions 3.0 dated 2019-06-20 and 4.0 dated 2020-05-28
DESCRIPTION | 14 MD5 | 18 NAMESPACE | 5 R/echo_package_functions.R | 21 R/echo_utils.R | 1425 +++++++++++++++++++++++++++++--------------- inst/CITATION | 33 - inst/doc/echo-vignette.Rmd | 4 inst/doc/echo-vignette.html | 721 ++++++++++++++-------- man/echo_find.Rd | 4 vignettes/echo-vignette.Rmd | 4 10 files changed, 1483 insertions(+), 766 deletions(-)
Title: Pin, Discover and Share Resources
Description: Pin remote resources into a local cache to work offline,
improve speed and avoid recomputing; discover and share resources
in local folders, 'GitHub', 'Kaggle' or 'RStudio Connect'. Resources can
be anything from 'CSV', 'JSON', or image files to arbitrary R objects.
Author: Javier Luraschi [aut, cre],
RStudio [cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between pins versions 0.4.0 dated 2020-04-07 and 0.4.1 dated 2020-05-28
DESCRIPTION | 6 +-- MD5 | 36 ++++++++++--------- NEWS.md | 34 ++++++++++++++++++ R/board_kaggle.R | 46 ++++++++++++++++++++----- R/board_registration.R | 6 ++- R/board_rsconnect.R | 3 - R/pin.R | 63 ++++++++-------------------------- R/pin_download.R | 46 +++++++++++++++++-------- R/pin_extensions.R | 67 +++++++++++++++++++++++++------------ R/pins_metadata.R |only R/ui_viewer.R | 10 ++++- R/utils.R | 2 - inst/doc/boards-kaggle.Rmd | 35 +++++++++++++++++++ inst/doc/boards-kaggle.html | 24 +++++++++++++ inst/doc/boards-rsconnect.Rmd | 2 - inst/doc/boards-rsconnect.html | 2 - man/custom-pins.Rd | 2 - tests/testthat/test-pin-metadata.R |only vignettes/boards-kaggle.Rmd | 35 +++++++++++++++++++ vignettes/boards-rsconnect.Rmd | 2 - 20 files changed, 300 insertions(+), 121 deletions(-)
Title: MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis
Description: Provides methods for quality control and robust pre-processing and analysis of MALDI mass spectrometry data.
Author: Javier Palarea-Albaladejo
Maintainer: Javier Palarea-Albaladejo <javier.palarea@bioss.ac.uk>
Diff between MALDIrppa versions 1.0.1-2 dated 2018-11-09 and 1.0.2 dated 2020-05-28
DESCRIPTION | 12 - MD5 | 54 ++-- NAMESPACE | 1 NEWS | 7 R/wavSmoothing.R | 11 build/vignette.rds |binary inst/doc/MALDIrppa_vignette.R | 2 inst/doc/MALDIrppa_vignette.Rmd | 2 inst/doc/MALDIrppa_vignette.html | 434 ++++++++++++++++++++++++++++++--------- man/MALDIrppa-package.Rd | 6 man/addMetadata.Rd | 3 man/alignPeaks.Rd | 4 man/countPeaks.Rd | 4 man/deletePeaks.Rd | 4 man/detectOutliers.Rd | 4 man/importSpectra.Rd | 4 man/plot.scSpectra.Rd | 4 man/rawToPeaks.Rd | 6 man/rawToSpectra.Rd | 4 man/screenSpectra.Rd | 4 man/snrPeaks.Rd | 4 man/summary.scSpectra.Rd | 4 man/summaryPeaks.Rd | 4 man/summarySpectra.Rd | 4 man/wavSmoothing.Rd | 18 - man/writeIntensity.Rd | 8 man/writeMetadata.Rd | 8 vignettes/MALDIrppa_vignette.Rmd | 2 28 files changed, 406 insertions(+), 216 deletions(-)
Title: Statistical Methods for the Analysis of Case-Control Point Data
Description: Statistical methods for analyzing case-control point data. Methods include the ratio of kernel densities, the difference in K Functions, the spatial scan statistic, and q nearest neighbors of cases.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between smacpod versions 2.0.4 dated 2018-05-14 and 2.1 dated 2020-05-28
smacpod-2.0.4/smacpod/R/Kdest.R |only smacpod-2.0.4/smacpod/R/tolenv.R |only smacpod-2.1/smacpod/DESCRIPTION | 9 ++-- smacpod-2.1/smacpod/MD5 | 62 ++++++++++++++-------------- smacpod-2.1/smacpod/NAMESPACE | 44 +++++++++----------- smacpod-2.1/smacpod/NEWS | 4 + smacpod-2.1/smacpod/R/circles.intersect.R | 2 smacpod-2.1/smacpod/R/kd.R | 11 ++--- smacpod-2.1/smacpod/R/kdest-print.R |only smacpod-2.1/smacpod/R/kdest.R |only smacpod-2.1/smacpod/R/kdplus.test.R | 37 ++++++++++------- smacpod-2.1/smacpod/R/logrr.R | 17 +++---- smacpod-2.1/smacpod/R/logrr.test.R | 35 +++++++--------- smacpod-2.1/smacpod/R/nrenv.R |only smacpod-2.1/smacpod/R/plot.kdenv.R | 39 ++++++++---------- smacpod-2.1/smacpod/R/plot.logrrenv.R | 15 ++---- smacpod-2.1/smacpod/R/plot.spscan.R | 2 smacpod-2.1/smacpod/R/qnn.test.R | 65 ++++++++++++++++-------------- smacpod-2.1/smacpod/R/spdensity.R | 1 smacpod-2.1/smacpod/R/spscan.test.R | 1 smacpod-2.1/smacpod/man/circles.plot.Rd | 15 ++++++ smacpod-2.1/smacpod/man/grave.Rd | 6 +- smacpod-2.1/smacpod/man/kd.Rd | 17 ++++++- smacpod-2.1/smacpod/man/kdest.Rd | 28 ++++++++---- smacpod-2.1/smacpod/man/kdplus.test.Rd | 19 ++++++-- smacpod-2.1/smacpod/man/logrr.Rd | 43 +++++++++++++------ smacpod-2.1/smacpod/man/logrr.test.Rd | 23 +++++----- smacpod-2.1/smacpod/man/nn.Rd | 4 - smacpod-2.1/smacpod/man/plot.kdenv.Rd | 38 ++++++++++------- smacpod-2.1/smacpod/man/plot.logrrenv.Rd | 2 smacpod-2.1/smacpod/man/plot.spscan.Rd | 3 - smacpod-2.1/smacpod/man/print.kdenv.Rd |only smacpod-2.1/smacpod/man/qnn.test.Rd | 30 ++++++------- smacpod-2.1/smacpod/man/spdensity.Rd | 24 ++++++++--- smacpod-2.1/smacpod/man/spscan.test.Rd | 18 ++++++-- 35 files changed, 351 insertions(+), 263 deletions(-)
Title: Geographic Profiling Methods for Serial Crime Analysis
Description: An implementation of functions for the analysis of serial crime
incidents. The package implements algorithms for the geographical profiling
of serial incidents in attempt to prioritize the area in which the anchor
point or home base of the perpetrator is located. The geographic profiling
methods in the package are implemented based upon the 'Dragnet' software
by Canter, Coffey, Huntley, and Missen (2000) <doi:10.1023/A:1007551316253>,
the 'CrimeStat' software by Levine (2013)
<https://nij.ojp.gov/topics/articles/crimestat-spatial-statistics-program-analysis-crime-incident-locations>,
and the criminal geographic targeting model outlined in Rossmo (2000, ISBN:978-0849381294)
and Rossmo (1995) <http://summit.sfu.ca/item/6820>.
Author: Jamie Spaulding and Keith Morris
Maintainer: Jamie Spaulding <jspauldi@mix.wvu.edu>
Diff between rgeoprofile versions 0.1.1 dated 2020-01-08 and 0.2.0 dated 2020-05-28
DESCRIPTION | 12 +++++++----- MD5 | 44 +++++++++++++++++++++++++++++--------------- NAMESPACE | 4 ++++ NEWS.md |only R/cgt_profile.R | 2 +- R/circle_center.R |only R/linear_profile.R | 2 +- R/lognorm_profile.R | 2 +- R/neg_exp_profile.R | 2 +- R/norm_profile.R | 2 +- R/trun_neg_exp_profile.R | 2 +- build |only inst/doc |only man/cgt_profile.Rd | 2 +- man/circle_center.Rd |only man/desalvo.Rd | 6 ++++-- man/linear_profile.Rd | 2 +- man/lognorm_profile.Rd | 5 ++--- man/neg_exp_profile.Rd | 13 ++++++++++--- man/norm_profile.Rd | 5 ++--- man/trun_neg_exp_profile.Rd | 5 ++--- vignettes |only 22 files changed, 68 insertions(+), 42 deletions(-)
Title: Mixed-Frequency Bayesian VAR Models
Description: Estimation of mixed-frequency Bayesian vector autoregressive (VAR) models. The package implements a state space-based VAR model that handles mixed frequencies of the data. The model is estimated using Markov Chain Monte Carlo to numerically approximate the posterior distribution. Prior distributions that can be used include normal-inverse Wishart and normal-diffuse priors as well as steady-state priors. Stochastic volatility can be handled by common or factor stochastic volatility models.
Author: Sebastian Ankargren [cre, aut]
(<https://orcid.org/0000-0003-4415-8734>),
Yukai Yang [aut] (<https://orcid.org/0000-0002-2623-8549>),
Gregor Kastner [ctb] (<https://orcid.org/0000-0002-8237-8271>)
Maintainer: Sebastian Ankargren <sebastian.ankargren@statistics.uu.se>
Diff between mfbvar versions 0.5.3 dated 2020-03-19 and 0.5.4 dated 2020-05-28
mfbvar-0.5.3/mfbvar/R/mcmc_diffuse.R |only mfbvar-0.5.3/mfbvar/man/build_DD.Rd |only mfbvar-0.5.3/mfbvar/man/build_Lambda.Rd |only mfbvar-0.5.3/mfbvar/man/build_M_Lambda.Rd |only mfbvar-0.5.3/mfbvar/man/build_U.Rd |only mfbvar-0.5.3/mfbvar/man/build_Y_tilde.Rd |only mfbvar-0.5.3/mfbvar/man/build_Z.Rd |only mfbvar-0.5.3/mfbvar/man/build_companion.Rd |only mfbvar-0.5.3/mfbvar/man/create_prior_Pi_Omega.Rd |only mfbvar-0.5.3/mfbvar/man/dmatt.Rd |only mfbvar-0.5.3/mfbvar/man/dmultn.Rd |only mfbvar-0.5.3/mfbvar/man/dnorm_trunc.Rd |only mfbvar-0.5.3/mfbvar/man/dnorminvwish.Rd |only mfbvar-0.5.3/mfbvar/man/estimate_mdd_ss_1.Rd |only mfbvar-0.5.3/mfbvar/man/eval_Pi_Sigma_RaoBlack.Rd |only mfbvar-0.5.3/mfbvar/man/eval_psi_MargPost.Rd |only mfbvar-0.5.3/mfbvar/man/figures |only mfbvar-0.5.3/mfbvar/man/fill_na.Rd |only mfbvar-0.5.3/mfbvar/man/kf_loglike.Rd |only mfbvar-0.5.3/mfbvar/man/kf_ragged.Rd |only mfbvar-0.5.3/mfbvar/man/max_eig_cpp.Rd |only mfbvar-0.5.3/mfbvar/man/mcmc_sampler.Rd |only mfbvar-0.5.3/mfbvar/man/mdd.minn.Rd |only mfbvar-0.5.3/mfbvar/man/ols_initialization.Rd |only mfbvar-0.5.3/mfbvar/man/ols_pi.Rd |only mfbvar-0.5.3/mfbvar/man/posterior_Pi_Sigma.Rd |only mfbvar-0.5.3/mfbvar/man/posterior_psi.Rd |only mfbvar-0.5.3/mfbvar/man/posterior_psi_mean.Rd |only mfbvar-0.5.3/mfbvar/man/prior_Pi_Sigma.Rd |only mfbvar-0.5.3/mfbvar/man/smoother.Rd |only mfbvar-0.5.4/mfbvar/DESCRIPTION | 15 mfbvar-0.5.4/mfbvar/MD5 | 141 +++---- mfbvar-0.5.4/mfbvar/NAMESPACE | 2 mfbvar-0.5.4/mfbvar/NEWS.md | 3 mfbvar-0.5.4/mfbvar/R/RcppExports.R | 9 mfbvar-0.5.4/mfbvar/R/builders.R | 7 mfbvar-0.5.4/mfbvar/R/data.R | 48 +- mfbvar-0.5.4/mfbvar/R/densities.R | 156 ++++---- mfbvar-0.5.4/mfbvar/R/eval.R | 198 +++++------ mfbvar-0.5.4/mfbvar/R/fill_na.R | 67 +-- mfbvar-0.5.4/mfbvar/R/interface.R | 195 ++++------ mfbvar-0.5.4/mfbvar/R/interval_to_moments.R | 41 +- mfbvar-0.5.4/mfbvar/R/list_to_matrix.R |only mfbvar-0.5.4/mfbvar/R/mcmc_sampler.R | 2 mfbvar-0.5.4/mfbvar/R/mcmc_sampler_csv.R | 12 mfbvar-0.5.4/mfbvar/R/mcmc_sampler_diffuse.R |only mfbvar-0.5.4/mfbvar/R/mcmc_sampler_fsv.R | 16 mfbvar-0.5.4/mfbvar/R/mcmc_sampler_iw.R | 12 mfbvar-0.5.4/mfbvar/R/mdd.R | 3 mfbvar-0.5.4/mfbvar/R/ols.R | 122 +++--- mfbvar-0.5.4/mfbvar/R/posteriors.R | 4 mfbvar-0.5.4/mfbvar/R/prior_pi_sigma.R | 2 mfbvar-0.5.4/mfbvar/R/utils.R | 7 mfbvar-0.5.4/mfbvar/build/vignette.rds |binary mfbvar-0.5.4/mfbvar/data/mf_usa.RData |only mfbvar-0.5.4/mfbvar/inst/doc/mfbvar_jss.R | 35 + mfbvar-0.5.4/mfbvar/inst/doc/mfbvar_jss.Rnw | 94 +++-- mfbvar-0.5.4/mfbvar/inst/doc/mfbvar_jss.pdf |binary mfbvar-0.5.4/mfbvar/inst/include/mvn.h | 35 + mfbvar-0.5.4/mfbvar/inst/include/simsm_adaptive_cv.h | 8 mfbvar-0.5.4/mfbvar/inst/include/simsm_adaptive_sv.h | 8 mfbvar-0.5.4/mfbvar/inst/include/simsm_adaptive_univariate.h | 9 mfbvar-0.5.4/mfbvar/inst/include/update_csv.h | 1 mfbvar-0.5.4/mfbvar/man/estimate_mfbvar.Rd | 9 mfbvar-0.5.4/mfbvar/man/interval_to_moments.Rd | 1 mfbvar-0.5.4/mfbvar/man/mf_sweden.Rd | 8 mfbvar-0.5.4/mfbvar/man/mf_usa.Rd |only mfbvar-0.5.4/mfbvar/man/mfbvar.Rd | 1 mfbvar-0.5.4/mfbvar/man/plot-mfbvar.Rd | 58 +-- mfbvar-0.5.4/mfbvar/man/plot.mfbvar_prior.Rd | 3 mfbvar-0.5.4/mfbvar/man/predict.mfbvar.Rd | 8 mfbvar-0.5.4/mfbvar/man/print.mfbvar.Rd | 3 mfbvar-0.5.4/mfbvar/man/print.mfbvar_prior.Rd | 3 mfbvar-0.5.4/mfbvar/man/set_prior.Rd | 53 +- mfbvar-0.5.4/mfbvar/man/summary.mfbvar.Rd | 3 mfbvar-0.5.4/mfbvar/man/summary.mfbvar_prior.Rd | 3 mfbvar-0.5.4/mfbvar/src/builders.cpp | 1 mfbvar-0.5.4/mfbvar/src/kf_cpp.cpp | 3 mfbvar-0.5.4/mfbvar/src/max_eig_cpp.cpp | 1 mfbvar-0.5.4/mfbvar/src/rnd_numbers.cpp | 3 mfbvar-0.5.4/mfbvar/src/smoothing.cpp | 1 mfbvar-0.5.4/mfbvar/src/update_csv.cpp | 12 mfbvar-0.5.4/mfbvar/src/update_fsv.cpp | 4 mfbvar-0.5.4/mfbvar/src/update_ng.cpp | 12 mfbvar-0.5.4/mfbvar/tests/testthat/test_mfbvar.R | 98 +++++ mfbvar-0.5.4/mfbvar/tests/testthat/test_plot.R | 4 mfbvar-0.5.4/mfbvar/tests/testthat/test_predict.R | 66 +++ mfbvar-0.5.4/mfbvar/vignettes/mfbvar_jss.Rnw | 94 +++-- 88 files changed, 1000 insertions(+), 704 deletions(-)
Title: Sliding Window Functions
Description: Provides type-stable rolling window functions over
any R data type. Cumulative and expanding windows are also supported.
For more advanced usage, an index can be used as a secondary vector
that defines how sliding windows are to be created.
Author: Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between slider versions 0.1.3 dated 2020-05-14 and 0.1.4 dated 2020-05-28
DESCRIPTION | 6 MD5 | 71 ++++---- NEWS.md | 7 R/hop-common.R | 10 - R/zzz.R | 2 README.md | 3 build/vignette.rds |binary inst/doc/rowwise.html | 10 - inst/doc/slider.html | 15 - src/assign.h |only src/hop.c | 169 +++++++++----------- src/index.c | 261 +++++++++++++++----------------- src/init.c | 18 +- src/slide.c | 159 +++++++++---------- src/slider-vctrs-private.c | 10 - src/slider-vctrs-private.h | 4 src/slider-vctrs-public.c | 2 src/utils.c | 47 ++++- src/utils.h | 16 + tests/testthat/test-hop-index-vec.R | 4 tests/testthat/test-hop-index2-vec.R | 4 tests/testthat/test-hop-vec.R | 4 tests/testthat/test-hop.R | 2 tests/testthat/test-hop2-vec.R | 4 tests/testthat/test-hop2.R | 2 tests/testthat/test-phop-index-vec.R | 4 tests/testthat/test-phop-vec.R | 4 tests/testthat/test-phop.R | 4 tests/testthat/test-pslide-index-vec.R | 15 + tests/testthat/test-pslide-period-vec.R | 4 tests/testthat/test-pslide-vec.R | 26 ++- tests/testthat/test-slide-index-vec.R | 15 + tests/testthat/test-slide-index2-vec.R | 15 + tests/testthat/test-slide-period-vec.R | 4 tests/testthat/test-slide-period2-vec.R | 4 tests/testthat/test-slide-vec.R | 26 ++- tests/testthat/test-slide2-vec.R | 26 ++- 37 files changed, 544 insertions(+), 433 deletions(-)
Title: Reinforced Angle-Based Multicategory Support Vector Machines
Description: Provides a solution path for Reinforced Angle-based Multicategory Support Vector Machines, with linear learning, polynomial learning, and Gaussian kernel learning. C. Zhang, Y. Liu, J. Wang and H. Zhu. (2016) <doi:10.1080/10618600.2015.1043010>.
Author: Chong Zhang, Yufeng Liu, and Shannon Holloway
Maintainer: Shannon Holloway <sthollow@ncsu.edu>
Diff between ramsvm versions 2.1 dated 2020-01-10 and 2.2 dated 2020-05-28
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 7 +++++++ src/ramsvm_init.c | 2 +- 4 files changed, 15 insertions(+), 8 deletions(-)
Title: An R Wrapper for the 'OpenTripPlanner' REST API
Description: A wrapper for the 'OpenTripPlanner' <http://www.opentripplanner.org/>
REST API. Queries are submitted to the relevant 'OpenTripPlanner' API resource, the response
is parsed and useful R objects are returned.
Author: Marcus Young [aut, cre] (<https://orcid.org/0000-0003-4627-1116>)
Maintainer: Marcus Young <M.A.Young@soton.ac.uk>
Diff between otpr versions 0.4.0 dated 2020-05-01 and 0.4.1 dated 2020-05-28
DESCRIPTION | 11 +- MD5 | 10 +- R/otp_get_times.R | 140 ++++++++++++++++---------------------- README.md | 35 +++++++-- man/figures/unnamed-chunk-8-1.png |binary man/otp_get_times.Rd | 4 - 6 files changed, 99 insertions(+), 101 deletions(-)
Title: Multivariate Ordinal Regression Models
Description: A flexible framework for fitting multivariate
ordinal regression models with composite likelihood methods. Methodological details are given in Hirk, Hornik, Vana (2020) <doi:10.18637/jss.v093.i04>.
Author: Rainer Hirk [aut, cre],
Kurt Hornik [aut],
Laura Vana [aut],
Alan Genz [ctb] (Fortran Code)
Maintainer: Rainer Hirk <rhirk@wu.ac.at>
Diff between mvord versions 1.0.0 dated 2020-04-17 and 1.0.1 dated 2020-05-28
DESCRIPTION | 10 +++---- MD5 | 17 ++++++------ NEWS | 3 ++ inst/doc/vignette_mvord.pdf |binary inst/doc/vignette_mvord2.R | 18 ++++++++----- inst/doc/vignette_mvord2.Rmd | 7 ++++- inst/doc/vignette_mvord2.html | 7 +++-- tests/check_toy_example.R | 55 ++++++++++++++++++------------------------ vignettes/df.rda |only vignettes/vignette_mvord2.Rmd | 7 ++++- 10 files changed, 68 insertions(+), 56 deletions(-)
Title: Methods of Moments
Description: Several classes for moment-based models are defined. The classes are defined for moment conditions derived from a single equation or a system of equations. The conditions can also be expressed as functions or formulas. Several methods are also offered to facilitate the development of different estimation techniques. The methods that are currently provided are the Generalized method of moments (Hansen 1982; <doi:10.2307/1912775>), for single equations and systems of equation, and the Generalized Empirical Likelihood (Smith 1997; <doi:10.1111/j.0013-0133.1997.174.x>, Kitamura 1997; <doi:10.1214/aos/1069362388>, Newey and Smith 2004; <doi:10.1111/j.1468-0262.2004.00482.x>, and Anatolyev 2005 <doi:10.1111/j.1468-0262.2005.00601.x>).
Author: Pierre Chausse <pchausse@uwaterloo.ca>
Maintainer: Pierre Chausse <pchausse@uwaterloo.ca>
Diff between momentfit versions 0.1-0 dated 2020-01-31 and 0.1-1 dated 2020-05-28
DESCRIPTION | 12 - MD5 | 77 +++++----- NAMESPACE | 2 R/allClasses.R | 45 +++++ R/momentModel-methods.R | 98 +++++-------- R/rModel-methods.R | 77 +++------- R/rsysMomentModel-methods.R | 324 +++++++++++++++++++++++++++++++++++++++++-- R/sgmmfit-methods.R | 39 ++--- R/sysMomentModel-methods.R | 164 ++++++++++++++++----- build/vignette.rds |binary data/CigarettesSW.rda |binary data/ConsumptionG.rda |binary data/Griliches.rda |binary data/HealthRWM.rda |binary data/Klein.rda |binary data/LabourCR.rda |binary data/ManufactCost.rda |binary data/Mroz.rda |binary data/simData.rda |binary inst/doc/gelS4.pdf |binary inst/doc/gmmS4.R | 92 +++++++++++- inst/doc/gmmS4.Rnw | 208 +++++++++++++++++++++++++-- inst/doc/gmmS4.pdf |binary man/Dresiduals-methods.Rd | 5 man/coef-methods.Rd | 5 man/evalDMoment-methods.Rd | 3 man/evalGmm-methods.Rd | 6 man/evalMoment-methods.Rd | 4 man/getRestrict-methods.Rd | 8 + man/model.matrix-methods.Rd | 7 man/modelDims-methods.Rd | 4 man/print-methods.Rd | 4 man/printRestrict-methods.Rd | 4 man/residuals-methods.Rd | 6 man/restModel-methods.Rd | 10 + man/setCoef-methods.Rd |only man/subsetting.Rd | 6 src/Makevars | 2 src/momentfit.h | 4 vignettes/gmmS4.Rnw | 208 +++++++++++++++++++++++++-- 40 files changed, 1159 insertions(+), 265 deletions(-)
Title: Generalized Linear Models with Clustering
Description: Binomial and Poisson regression for clustered data, fixed
and random effects with bootstrapping.
Author: Göran Broström [aut, cre],
Jianming Jin [ctb],
Henrik Holmberg [ctb]
Maintainer: Göran Broström <goran.brostrom@umu.se>
Diff between glmmML versions 1.1.0 dated 2019-04-30 and 1.1.1 dated 2020-05-28
glmmML-1.1.0/glmmML/inst/doc/vignettes |only glmmML-1.1.1/glmmML/ChangeLog | 13 ++++ glmmML-1.1.1/glmmML/DESCRIPTION | 18 ++++-- glmmML-1.1.1/glmmML/MD5 | 35 ++++++------- glmmML-1.1.1/glmmML/R/glmmMLBoot.R | 3 - glmmML-1.1.1/glmmML/R/glmmboot.R | 1 glmmML-1.1.1/glmmML/build |only glmmML-1.1.1/glmmML/inst/doc/glmmML.Rnw |only glmmML-1.1.1/glmmML/inst/doc/glmmML.pdf |binary glmmML-1.1.1/glmmML/src/Makevars | 4 - glmmML-1.1.1/glmmML/src/bfun.c | 22 ++++---- glmmML-1.1.1/glmmML/src/fun.c | 86 +++++++++++++++++++------------- glmmML-1.1.1/glmmML/src/fun.h | 16 ----- glmmML-1.1.1/glmmML/src/ghq.f | 5 + glmmML-1.1.1/glmmML/src/ghq.h | 2 glmmML-1.1.1/glmmML/src/glmmb0.c | 15 ++--- glmmML-1.1.1/glmmML/src/glmmboot.c | 7 +- glmmML-1.1.1/glmmML/src/glmmml.c | 20 ++++--- glmmML-1.1.1/glmmML/vignettes |only 19 files changed, 140 insertions(+), 107 deletions(-)
Title: Bayesian Copula Regression
Description: Tools for Bayesian copula generalized linear models (GLMs).
The sampling scheme is based on Pitt, Chan, and Kohn (2006) <doi:10.1093/biomet/93.3.537>.
Regression parameters (including coefficients and dispersion parameters) are
estimated via the adaptive random walk Metropolis approach developed by
Haario, Saksman, and Tamminen (1999) <doi:10.1007/s001800050022>.
The prior for the correlation matrix is based on Hoff (2007) <doi:10.1214/07-AOAS107>.
Author: Ethan Alt [aut, cre],
Yash Bhosale [aut]
Maintainer: Ethan Alt <ethanalt@live.unc.edu>
Diff between bayescopulareg versions 0.1.0 dated 2020-05-01 and 0.1.2 dated 2020-05-28
DESCRIPTION | 15 ++++++++++----- MD5 | 11 ++++++----- NEWS.md |only man/bayescopulareg-package.Rd | 9 +++++++++ src/condnormal.cpp | 2 +- src/copula_predict.cpp | 2 +- src/sample_copula.cpp | 10 ++++++---- 7 files changed, 33 insertions(+), 16 deletions(-)
More information about bayescopulareg at CRAN
Permanent link
Title: Tools for Working with Recurrence Rules
Description: Provides tools for defining recurrence rules and
recurrence bundles. Recurrence rules are a programmatic way to define
a recurring event, like the first Monday of December. Multiple
recurrence rules can be combined into larger recurrence bundles.
Together, these provide a system for adjusting and generating
sequences of dates while simultaneously skipping over dates in a
recurrence bundle's event set.
Author: Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between almanac versions 0.1.0 dated 2020-05-27 and 0.1.1 dated 2020-05-28
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NAMESPACE | 2 ++ NEWS.md |only R/almanac-package.R | 6 ++++++ build/vignette.rds |binary inst/doc/almanac.html | 4 ++-- src/adjustments.cc | 30 +++++++++++++++++++----------- 8 files changed, 39 insertions(+), 22 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018) <doi:10.1111/2041-210X.13029>. Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer [aut, cre],
Dean Adams [aut]
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 0.5.2 dated 2020-01-26 and 0.6.0 dated 2020-05-28
DESCRIPTION | 10 MD5 | 48 ++- NAMESPACE | 10 NEWS.md | 16 + R/RRPP.support.code.r | 593 ++++++++++++++++++++++-------------------- R/RRPP.utils.r | 159 +++++++++++ R/add.tree.r |only R/anova.lm.rrpp.r | 8 R/lm.rrpp.r | 47 +-- R/ordinate.r |only R/pairwise.r | 6 R/shared.support.code.r | 175 ++++++++++++ R/trajectory.analysis.r | 4 build/vignette.rds |binary data/PlethMorph.rda |binary inst/doc/ANOVA.vs.MANOVA.html | 4 inst/doc/Using.RRPP.R | 2 inst/doc/Using.RRPP.Rmd | 4 inst/doc/Using.RRPP.html | 16 - man/add.tree.Rd |only man/anova.lm.rrpp.Rd | 8 man/lm.rrpp.Rd | 8 man/ordinate.Rd |only man/plot.ordinate.Rd |only man/print.classify.Rd |only man/print.ordinate.Rd |only man/print.summary.ordinate.Rd |only man/summary.classify.Rd |only man/summary.ordinate.Rd |only vignettes/Using.RRPP.Rmd | 4 30 files changed, 764 insertions(+), 358 deletions(-)
Title: Computes the Scores for Different Implicit Measures
Description: A tool for computing the scores for the Implicit Association Test
(IAT; Greenwald, McGhee & Schwartz (1998) <doi:10.1037/0022-3514.74.6.1464>)
and the Single Category-IAT (SC-IAT: Karpinski & Steinman
(2006) <doi:10.1037/0022-3514.91.1.16>). Functions for preparing the data
(both for the IAT and the SC-IAT), plotting the results, and obtaining a
table with the scores of implicit measures descriptive statistics are
provided.
Author: Ottavia M. Epifania [aut, cre],
Pasquale Anselmi [ctb],
Egidio Robusto [ctb]
Maintainer: Ottavia M. Epifania <otta.epifania@gmail.com>
Diff between implicitMeasures versions 0.1.2 dated 2020-04-05 and 0.1.3 dated 2020-05-28
DESCRIPTION | 10 - MD5 | 45 +++--- NEWS.md | 6 R/computeD.R | 2 README.md | 159 ++++++++++++++++++----- inst/doc/IAT-example.R | 52 ++++--- inst/doc/IAT-example.Rmd | 110 +++++++++------ inst/doc/IAT-example.html | 214 +++++++++++++++---------------- inst/doc/SC-IAT-example.R | 74 +++++----- inst/doc/SC-IAT-example.Rmd | 134 +++++++++++-------- inst/doc/SC-IAT-example.html | 211 +++++++++++++----------------- inst/doc/implicitMeasures.R | 15 +- inst/doc/implicitMeasures.Rmd | 52 ++++--- inst/doc/implicitMeasures.html | 76 +++++------ inst/joss |only inst/paper.bib |only man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary tests/spelling.R |only vignettes/IAT-example.Rmd | 110 +++++++++------ vignettes/SC-IAT-example.Rmd | 134 +++++++++++-------- vignettes/implicitMeasures.Rmd | 52 ++++--- vignettes/vignette.bib | 20 ++ 23 files changed, 843 insertions(+), 633 deletions(-)
More information about implicitMeasures at CRAN
Permanent link
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.19.2 dated 2020-02-11 and 2.21.0-3 dated 2020-05-28
StanHeaders-2.19.2/StanHeaders/inst/include/src/stan/io/json |only StanHeaders-2.19.2/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar_def.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar_inst.cpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/fwd/scal/meta/ad_promotable.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/opencl/add.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/opencl/constants.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/opencl/kernels/zeros.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/opencl/lower_tri_inverse.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/opencl/subtract.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/opencl/transpose.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/arr/err/check_opencl.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/arr/meta/contains_std_vector.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/arr/meta/is_constant_struct.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/mat/meta/is_constant_struct.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/mat/meta/is_vector.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/mat/meta/is_vector_like.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_nonconstant_struct.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/scal/meta/is_constant_struct.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/scal/meta/is_nonconstant_struct.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/prim/scal/meta/seq_view.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver.hpp |only StanHeaders-2.19.2/StanHeaders/inst/include/stan/math/rev/scal/meta/ad_promotable.hpp |only StanHeaders-2.21.0-3/StanHeaders/DESCRIPTION | 15 StanHeaders-2.21.0-3/StanHeaders/MD5 | 3449 +++++----- StanHeaders-2.21.0-3/StanHeaders/NAMESPACE | 1 StanHeaders-2.21.0-3/StanHeaders/R |only StanHeaders-2.21.0-3/StanHeaders/build/vignette.rds |binary StanHeaders-2.21.0-3/StanHeaders/inst/CITATION | 6 StanHeaders-2.21.0-3/StanHeaders/inst/doc/stanmath.R | 19 StanHeaders-2.21.0-3/StanHeaders/inst/doc/stanmath.Rmd | 62 StanHeaders-2.21.0-3/StanHeaders/inst/doc/stanmath.html | 444 - StanHeaders-2.21.0-3/StanHeaders/inst/include/kinsol |only StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/analyze/mcmc/autocovariance.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/analyze/mcmc/compute_effective_sample_size.hpp | 292 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/analyze/mcmc/compute_potential_scale_reduction.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/analyze/mcmc/split_chains.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/callbacks/interrupt.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/callbacks/logger.hpp | 182 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/callbacks/stream_logger.hpp | 134 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/callbacks/stream_writer.hpp | 191 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/callbacks/tee_writer.hpp | 106 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/callbacks/writer.hpp | 86 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/command/stanc_helper.hpp | 221 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/array_var_context.hpp | 626 + StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/chained_var_context.hpp | 107 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/cmd_line.hpp | 519 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/dump.hpp | 1470 ++-- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/empty_var_context.hpp | 184 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/ends_with.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/is_whitespace.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/program_reader.hpp | 79 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/random_var_context.hpp | 479 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/read_line.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/reader.hpp | 139 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/stan_csv_reader.hpp | 667 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/starts_with.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/trim_spaces.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/util.hpp | 51 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/validate_zero_buf.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/var_context.hpp | 485 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/io/writer.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_is_data_vis.hpp | 152 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_is_data_vis_def.hpp | 68 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_order_id_vis.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_order_id_vis_def.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_set_is_data_vis.hpp | 136 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_set_is_data_vis_def.hpp | 70 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_total_dims_vis.hpp | 138 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_total_dims_vis_def.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/bare_type_vis.hpp | 360 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_bounds_vis.hpp | 264 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_is_specialized_vis.hpp | 267 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/block_type_offset_multiplier_vis_def.hpp | 60 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/ends_with.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/ends_with_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/fun_name_exists.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/fun_name_exists_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/generate_expression.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/get_ccdf.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/get_ccdf_def.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/get_cdf.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/get_cdf_def.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/get_prob_fun.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/get_prob_fun_def.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_ccdf_suffix.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_ccdf_suffix_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_cdf_suffix.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_cdf_suffix_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_lp_suffix.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_lp_suffix_def.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_def.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis.hpp | 386 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis_def.hpp | 296 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_prob_fun_suffix.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_prob_fun_suffix_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_rng_suffix.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_rng_suffix_def.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_vis.hpp | 418 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_vis_def.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/infer_type_indexing.hpp | 25 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/infer_type_indexing_def.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_assignable.hpp | 43 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_assignable_def.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_multi_index.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_multi_index_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_multi_index_vis.hpp | 110 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_multi_index_vis_def.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_vis.hpp | 94 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_vis_def.hpp | 98 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_no_op_statement_vis.hpp | 304 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_no_op_statement_vis_def.hpp | 134 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nonempty.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nonempty_def.hpp | 18 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_space.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_space_def.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined_def.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined_prob_function.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/is_user_defined_prob_function_def.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/num_index_op_dims.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/print_scope.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/print_scope_def.hpp | 66 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/promote_primitive.hpp | 58 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/promote_primitive_def.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type_vis.hpp | 415 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type_vis_def.hpp | 208 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_ccdf_suffix.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_cdf_suffix.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/strip_prob_fun_suffix.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/template.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis.hpp | 428 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis_def.hpp | 186 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg1_vis.hpp | 362 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg1_vis_def.hpp | 219 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg2_vis.hpp | 367 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/var_type_arg2_vis_def.hpp | 219 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/write_bare_expr_type.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/write_bare_expr_type_def.hpp | 61 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/write_block_var_type.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/fun/write_idx_vis_def.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/nil.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver.hpp | 104 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_control.hpp | 149 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_control_def.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/algebra_solver_def.hpp | 23 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/assgn.hpp | 155 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/assgn_def.hpp | 41 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/binary_op.hpp | 88 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/binary_op_def.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/block_var_decl_def.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/break_continue_statement.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/break_continue_statement_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_op.hpp | 113 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_op_def.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_statement.hpp | 66 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_statement_def.hpp | 18 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/distribution.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/expression.hpp | 151 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/expression_def.hpp | 104 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/for_array_statement.hpp | 77 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/for_array_statement_def.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/for_matrix_statement.hpp | 77 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/for_matrix_statement_def.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/for_statement.hpp | 76 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/for_statement_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/fun.hpp | 91 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/fun_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_def.hpp | 109 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_def_def.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_defs.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/function_decl_defs_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/idx.hpp | 143 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/idx_def.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/increment_log_prob_statement.hpp | 54 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/increment_log_prob_statement_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/index_op.hpp | 85 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/index_op_sliced.hpp | 87 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/index_op_sliced_def.hpp | 18 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal.hpp | 52 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal_def.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_1d.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_1d_def.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode.hpp | 145 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_control.hpp | 190 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_control_def.hpp | 38 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/integrate_ode_def.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/lb_idx.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/lb_idx_def.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/local_var_decl_def.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/lub_idx.hpp | 63 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/lub_idx_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/map_rect.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/map_rect_def.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_expr.hpp | 78 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_expr_def.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/multi_idx.hpp | 38 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/multi_idx_def.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/no_op_statement.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/omni_idx.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/omni_idx_def.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/print_statement.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/print_statement_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/printable.hpp | 104 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/printable_def.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/program.hpp | 177 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/program_def.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/range.hpp | 92 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/range_def.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/reject_statement.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/reject_statement_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/return_statement.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/return_statement_def.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_expr.hpp | 78 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_expr_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/sample.hpp | 111 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/sample_def.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/statement.hpp | 414 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/statement_def.hpp | 53 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/statements.hpp | 70 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/statements_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/ub_idx.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/ub_idx_def.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/unary_op.hpp | 74 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/unary_op_def.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/uni_idx.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/uni_idx_def.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/var_decl.hpp | 152 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/var_decl_def.hpp | 45 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/variable.hpp | 72 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/variable_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/variable_dims.hpp | 65 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/variable_dims_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/while_statement.hpp | 65 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/node/while_statement_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/origin_block.hpp | 160 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/scope.hpp | 294 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/scope_def.hpp | 173 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signature_t.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signatures.hpp | 813 +- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signatures_def.hpp | 921 +- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/bare_array_type_def.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/block_array_type_def.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/cholesky_factor_corr_block_type.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/cholesky_factor_cov_block_type.hpp | 87 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/double_block_type_def.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/double_type.hpp | 58 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/double_type_def.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/ill_formed_type.hpp | 47 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/ill_formed_type_def.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/int_block_type_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/int_type.hpp | 59 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/int_type_def.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/local_array_type_def.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/local_var_type.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/local_var_type_def.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_block_type_def.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_local_type.hpp | 83 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_type.hpp | 58 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/matrix_type_def.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_block_type_def.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_local_type_def.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_type.hpp | 58 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/row_vector_type_def.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/vector_block_type_def.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/vector_type.hpp | 58 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/vector_type_def.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/void_type.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/type/void_type_def.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/variable_map.hpp | 167 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/ast/variable_map_def.hpp | 65 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/compile_functions.hpp | 83 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/compiler.hpp | 75 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/function_signatures.h | 139 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/constants.hpp | 84 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/expression_visgen.hpp | 603 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/fun_scalar_type.hpp | 90 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_arg_decl.hpp | 50 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_array_builder_adds.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_bare_type.hpp | 99 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_block_var.hpp | 89 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_catch_throw_located.hpp | 51 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_class_decl.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_class_decl_end.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_comment.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_constrained_param_names_method.hpp | 65 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_constructor.hpp | 217 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_cpp.hpp | 88 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_data_var_ctor.hpp | 52 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_data_var_init.hpp | 85 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_destructor.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_dims_method.hpp | 94 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_expression.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_fun_inst_templ_params.hpp | 103 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function.hpp | 71 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_arguments.hpp | 118 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_body.hpp | 75 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_functor.hpp | 83 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_inline_return_type.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation.hpp | 86 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation_body.hpp | 110 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation_name.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiations.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_name.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_function_template_parameters.hpp | 106 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_functions.hpp | 38 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_functor_arguments.hpp | 68 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_globals.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_idx.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_idx_user.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_idxs.hpp | 65 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_idxs_user.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_include.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_includes.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_indent.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_indexed_expr.hpp | 128 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_indexed_expr_user.hpp | 54 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_initializer.hpp | 87 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_line_number.hpp | 41 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_local_var_decl_inits.hpp | 122 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_log_prob.hpp | 204 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_member_var_decls.hpp | 64 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_member_var_decls_all.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_model_name_method.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_model_typedef.hpp | 38 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_namespace_end.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_namespace_start.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_param_names_array.hpp | 77 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_param_names_method.hpp | 53 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_param_var.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_printable.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_private_decl.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_program_reader_fun.hpp | 53 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_propto_default_function.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_propto_default_function_body.hpp | 53 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_public_decl.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_quoted_expression.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_quoted_string.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_read_transform_params.hpp | 101 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_real_var_type.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_register_mpi.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_set_param_ranges.hpp | 89 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_standalone_functions.hpp | 82 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_statement.hpp | 43 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_statements.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_transform_inits_method.hpp | 302 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_try.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_typedef.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_typedefs.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_unconstrained_param_names_array.hpp | 80 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_unconstrained_param_names_method.hpp | 68 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_using.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_using_namespace.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_usings.hpp | 38 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_usings_standalone_functions.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_block_var.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_context_size.hpp | 82 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_nonnegative.hpp | 62 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_tparam_inits.hpp | 93 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_var_decl.hpp | 116 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_var_dims.hpp | 69 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_var_constructor.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_var_fill_define.hpp | 61 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_version_comment.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_void_statement.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_write_array_method.hpp | 283 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/generate_write_block_var.hpp | 41 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/get_block_var_dims.hpp | 55 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/get_typedef_var_type.hpp | 41 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/get_verbose_var_type.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/idx_user_visgen.hpp | 82 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/idx_visgen.hpp | 92 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/is_numbered_statement_vis.hpp | 68 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/printable_visgen.hpp | 64 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/statement_visgen.hpp | 699 +- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/visgen.hpp | 100 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_begin_all_dims_col_maj_loop.hpp | 139 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_begin_all_dims_row_maj_loop.hpp | 139 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_begin_array_dims_loop.hpp | 68 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_begin_param_elements_loop.hpp | 147 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_constraints_fn.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_end_loop.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_nested_resize_loop_begin.hpp | 108 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_resize_var_idx.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_var_decl_arg.hpp | 130 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_var_decl_type.hpp | 70 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_all_dims.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_all_dims_msg.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/generator/write_var_idx_array_dims.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar.hpp | 54 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar_def.hpp | 93 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/block_var_decls_grammar_def.hpp | 284 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/block_var_decls_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/common_adaptors_def.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar.hpp | 51 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar_def.hpp | 58 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar.hpp | 70 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar_def.hpp | 157 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar.hpp | 72 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_def.hpp | 167 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar.hpp | 91 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_def.hpp | 158 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_inst.cpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/iterator_typedefs.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar.hpp | 115 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar_def.hpp | 248 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/local_var_decls_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar.hpp | 110 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_def.hpp | 252 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions_def.cpp | 439 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar.hpp | 52 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar_def.hpp | 92 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar.hpp | 190 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_def.hpp | 612 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar.hpp | 169 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_def.hpp | 654 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar.hpp | 21 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar_def.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/grammars/whitespace_grammar_inst.cpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/parser.hpp | 186 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/lang/rethrow_located.hpp | 284 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/base_adaptation.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/base_adapter.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/base_mcmc.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/chains.hpp | 1052 +-- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/covar_adaptation.hpp | 54 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/fixed_param_sampler.hpp | 21 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/base_hmc.hpp | 337 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp | 173 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp | 97 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/dense_e_point.hpp | 113 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp | 88 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/diag_e_point.hpp | 108 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/ps_point.hpp | 134 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/softabs_metric.hpp | 354 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/softabs_point.hpp | 55 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/unit_e_metric.hpp | 85 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/unit_e_point.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/base_integrator.hpp | 25 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/base_leapfrog.hpp | 228 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/expl_leapfrog.hpp | 50 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/impl_leapfrog.hpp | 173 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_dense_e_nuts.hpp | 79 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp | 79 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_softabs_nuts.hpp | 66 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_unit_e_nuts.hpp | 66 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp | 626 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/dense_e_nuts.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/diag_e_nuts.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/softabs_nuts.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/unit_e_nuts.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_dense_e_nuts_classic.hpp | 84 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_diag_e_nuts_classic.hpp | 86 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_unit_e_nuts_classic.hpp | 67 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/base_nuts_classic.hpp | 368 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/dense_e_nuts_classic.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/diag_e_nuts_classic.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/unit_e_nuts_classic.hpp | 37 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_dense_e_static_hmc.hpp | 92 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_diag_e_static_hmc.hpp | 87 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_softabs_static_hmc.hpp | 72 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_unit_e_static_hmc.hpp | 74 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/base_static_hmc.hpp | 237 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/dense_e_static_hmc.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/diag_e_static_hmc.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/softabs_static_hmc.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static/unit_e_static_hmc.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_dense_e_static_uniform.hpp | 88 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_diag_e_static_uniform.hpp | 87 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_softabs_static_uniform.hpp | 63 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_unit_e_static_uniform.hpp | 74 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/base_static_uniform.hpp | 281 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/dense_e_static_uniform.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/diag_e_static_uniform.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/softabs_static_uniform.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/unit_e_static_uniform.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_dense_e_xhmc.hpp | 85 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_diag_e_xhmc.hpp | 85 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_softabs_xhmc.hpp | 66 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_unit_e_xhmc.hpp | 67 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/base_xhmc.hpp | 522 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/dense_e_xhmc.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/diag_e_xhmc.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/softabs_xhmc.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/unit_e_xhmc.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/sample.hpp | 83 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/stepsize_adaptation.hpp | 169 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/stepsize_adapter.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/stepsize_covar_adapter.hpp | 57 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/stepsize_var_adapter.hpp | 58 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/var_adaptation.hpp | 52 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/mcmc/windowed_adaptation.hpp | 231 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/finite_diff_grad.hpp | 95 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/grad_hess_log_prob.hpp | 120 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/grad_tr_mat_times_hessian.hpp | 25 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/gradient.hpp | 50 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/gradient_dot_vector.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/hessian.hpp | 25 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/hessian_times_vector.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/indexing/deep_copy.hpp | 112 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/indexing/index.hpp | 193 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/indexing/index_list.hpp | 123 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/indexing/lvalue.hpp | 877 +- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/indexing/rvalue.hpp | 700 -- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/indexing/rvalue_at.hpp | 130 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/indexing/rvalue_index_size.hpp | 118 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/indexing/rvalue_return.hpp | 410 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/log_prob_grad.hpp | 165 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/log_prob_propto.hpp | 178 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/model_base.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/model_base_crtp.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/model_functional.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/model_header.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/prob_grad.hpp | 113 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/standalone_functions_header.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/model/test_gradients.hpp | 174 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/optimization/bfgs.hpp | 785 +- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/optimization/bfgs_linesearch.hpp | 547 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/optimization/bfgs_update.hpp | 111 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/optimization/lbfgs_update.hpp | 206 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/optimization/newton.hpp | 124 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/diagnose/defaults.hpp | 137 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/diagnose/diagnose.hpp | 100 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/error_codes.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/experimental/advi/defaults.hpp | 630 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/experimental/advi/fullrank.hpp | 152 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/experimental/advi/meanfield.hpp | 152 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/optimize/bfgs.hpp | 325 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/optimize/defaults.hpp | 624 - StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/optimize/lbfgs.hpp | 329 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/optimize/newton.hpp | 207 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/defaults.hpp | 969 +- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/fixed_param.hpp | 130 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_dense_e.hpp | 241 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp | 299 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_diag_e.hpp | 239 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp | 295 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_unit_e.hpp | 116 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_unit_e_adapt.hpp | 138 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_static_dense_e.hpp | 238 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_static_dense_e_adapt.hpp | 300 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_static_diag_e.hpp | 238 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_static_diag_e_adapt.hpp | 298 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_static_unit_e.hpp | 115 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/hmc_static_unit_e_adapt.hpp | 139 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/sample/standalone_gqs.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/create_rng.hpp | 55 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/create_unit_e_dense_inv_metric.hpp | 54 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/create_unit_e_diag_inv_metric.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/experimental_message.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/generate_transitions.hpp | 127 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/gq_writer.hpp | 165 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/initialize.hpp | 95 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/mcmc_writer.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/read_dense_inv_metric.hpp | 67 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/read_diag_inv_metric.hpp | 68 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/run_adaptive_sampler.hpp | 157 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/run_sampler.hpp | 130 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/validate_dense_inv_metric.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/services/util/validate_diag_inv_metric.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/variational/advi.hpp | 1043 +-- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/variational/base_family.hpp | 196 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/variational/families/normal_fullrank.hpp | 970 +- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/variational/families/normal_meanfield.hpp | 848 +- StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/variational/print_progress.hpp | 87 StanHeaders-2.21.0-3/StanHeaders/inst/include/src/stan/version.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/arr.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/arr/fun/log_sum_exp.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/arr/fun/sum.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/arr/fun/to_fvar.hpp | 37 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/core/fvar.hpp | 43 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/Eigen_NumTraits.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/columns_dot_product.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/columns_dot_self.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/crossprod.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/determinant.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/divide.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/dot_product.hpp | 38 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/dot_self.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/inverse.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_determinant.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_softmax.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_sum_exp.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left_ldlt.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left_tri_low.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_right.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_right_tri_low.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply_lower_tri_self_transpose.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/qr_Q.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/qr_R.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/quad_form_sym.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/rows_dot_product.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/rows_dot_self.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/softmax.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/squared_distance.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/sum.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/tcrossprod.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/to_fvar.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/typedefs.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/fun/unit_vector_constrain.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/functor/gradient.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/functor/hessian.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/functor/jacobian.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/meta/operands_and_partials.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/mat/vectorize/apply_scalar_unary.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/meta.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi_approx.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/abs.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/acos.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/acosh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/asin.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/asinh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan2.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/atanh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/bessel_first_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/bessel_second_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/beta.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/binary_log_loss.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/binomial_coefficient_log.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/cbrt.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/ceil.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/cos.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/cosh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/digamma.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/erf.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/erfc.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/exp.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/exp2.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/expm1.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/fabs.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/falling_factorial.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/fdim.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/floor.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/fma.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmax.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmin.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmod.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_p.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_q.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/grad_inc_beta.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/hypot.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/inc_beta.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_Phi.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_cloglog.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_logit.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_sqrt.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_square.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/is_inf.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/is_nan.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/lbeta.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/ldexp.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/lgamma.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/lmgamma.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log10.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_exp.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_inv_logit.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p_exp.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log2.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_diff_exp.hpp | 25 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_falling_factorial.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_inv_logit.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_inv_logit_diff.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_mix.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_rising_factorial.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_sum_exp.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/logit.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/modified_bessel_first_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/modified_bessel_second_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/multiply_log.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/owens_t.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/pow.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/primitive_value.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/rising_factorial.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/round.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/sin.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/sinh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/sqrt.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/square.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/tan.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/tanh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/tgamma.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/to_fvar.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/trigamma.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/trunc.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/value_of.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/fun/value_of_rec.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/meta/is_fvar.hpp | 21 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/meta/operands_and_partials.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/fwd/scal/meta/partials_type.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/memory/stack_alloc.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/arr.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/fun/typedefs.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian.hpp | 23 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian_auto.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/functor/grad_hessian.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/functor/grad_tr_mat_times_hessian.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/functor/gradient_dot_vector.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/functor/hessian.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/functor/hessian_times_vector.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/mat/functor/partial_derivative.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/meta.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/mix/scal.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/buffer_types.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/cholesky_decompose.hpp | 89 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/copy.hpp | 256 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/copy_triangular.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/diagonal_multiply.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_diagonal_zeros.hpp | 23 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_invalid_matrix_view.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_mat_size_one.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_matching_dims.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_nan.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_opencl.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_square.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_symmetric.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_triangular.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/err/check_vector.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/identity.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/is_matrix_cl.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernel_cl.hpp | 321 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/add.hpp | 75 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/bernoulli_logit_glm_lpmf.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/categorical_logit_glm_lpmf.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/check_diagonal_zeros.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/check_nan.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/check_symmetric.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/cholesky_decompose.hpp | 45 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/copy.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/copy_triangular.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/device_functions |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/diag_inv.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/divide_columns.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/fill.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/gp_exp_quad_cov.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/helpers.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/identity.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/inv_lower_tri_multiply.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/matrix_multiply.hpp | 323 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/multiply_transpose.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/neg_binomial_2_log_glm_lpmf.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/neg_rect_lower_tri_multiply.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/normal_id_glm_lpdf.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/ordered_logistic_glm_lpmf.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/pack.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/poisson_log_glm_lpmf.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/rep_matrix.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/scalar_mul.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/scalar_mul_diagonal.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/sub_block.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/subtract.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/transpose.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/triangular_transpose.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/kernels/unpack.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/matrix_cl.hpp | 536 + StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/matrix_cl_view.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/multiply.hpp | 135 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/multiply_transpose.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/opencl.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/opencl_context.hpp | 83 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/prim |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/scalar_type.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/stringify.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/sub_block.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/tri_inverse.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/triangular_transpose.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/value_type.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/opencl/zeros.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/err/check_matching_sizes.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/err/check_nonzero_size.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/err/check_ordered.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/err/is_matching_size.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/err/is_nonzero_size.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/err/is_ordered.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/array_builder.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/common_type.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/dot.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/dot_self.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/fill.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/inverse_softmax.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/log_sum_exp.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_elements.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_scalar.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_scalar_type.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/rep_array.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/scaled_add.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/sort_asc.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/sort_desc.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/sub.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/sum.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/value_of.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/value_of_rec.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/fun/vec_concat.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_observer.hpp | 136 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_system.hpp | 98 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_1d.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp | 77 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/meta/VectorBuilderHelper.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/meta/index_type.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/meta/is_constant.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/meta/is_vector.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/meta/scalar_type.hpp | 25 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/arr/meta/value_type.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/core |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/core.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/eigen_plugins.h |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor_corr.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_column_index.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_consistent_size_mvt.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_consistent_sizes_mvt.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_corr_matrix.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_cov_matrix.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_finite.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_flag_sundials.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_ldlt_factor.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_lower_triangular.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_matching_dims.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_multiplicable.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_nonempty.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_ordered.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_definite.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_semidefinite.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_positive_ordered.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_range.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_row_index.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_simplex.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_spsd_matrix.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_square.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_std_vector_index.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_symmetric.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_unit_vector.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/check_vector.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/constraint_tolerance.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_cholesky_factor.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_cholesky_factor_corr.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_column_index.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_corr_matrix.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_ldlt_factor.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_lower_triangular.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_mat_finite.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_matching_dims.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_pos_definite.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_square.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_symmetric.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/is_unit_vector.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/err/validate_non_negative_index.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/Eigen.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/LDLT_factor.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/MatrixExponential.h | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/accumulator.hpp | 23 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/add.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/add_diag.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/append_array.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/append_col.hpp | 45 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/append_row.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/assign.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/autocorrelation.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/chol2inv.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_constrain.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_free.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_decompose.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_factor_constrain.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_factor_free.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/common_type.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/corr_matrix_constrain.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/corr_matrix_free.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_exp_quad.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_constrain.hpp | 25 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_constrain_lkj.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_free.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_free_lkj.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_u.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_v.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_w.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_matrix_times_vector.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_to_dense_matrix.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/cumulative_sum.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_post_multiply.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_pre_multiply.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/digamma.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/dims.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/distance.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/divide.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/divide_columns.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/dot_product.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/elt_divide.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/elt_multiply.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/exp2.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_U.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_cov_matrix.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/get_lp.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_dot_prod_cov.hpp | 38 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_exp_quad_cov.hpp | 588 + StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_exponential_cov.hpp | 89 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_matern32_cov.hpp | 99 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_matern52_cov.hpp | 138 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_periodic_cov.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/head.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/initialize.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/inverse_spd.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/log2.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/log_mix.hpp | 126 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/log_sum_exp.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/make_nu.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_pade.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/max.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_ldlt.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_spd.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_tri.hpp | 99 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_tri_low.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_ldlt.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_spd.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_tri.hpp | 47 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_tri_low.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/mean.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/min.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/multiply.hpp | 60 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/num_elements.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/ordered_constrain.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/ordered_free.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/positive_ordered_constrain.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/positive_ordered_free.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/prod.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_elements.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_scalar.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_scalar_type.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_Q.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_R.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_thin_Q.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_thin_R.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/quad_form_diag.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/rank.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_L.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_matrix.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_row_vector.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_vector.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/resize.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/sd.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/segment.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/simplex_constrain.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/simplex_free.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_asc.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_desc.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/stan_print.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/sub_col.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/sub_row.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/subtract.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/tail.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/tcrossprod.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/to_array_1d.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/to_array_2d.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/to_matrix.hpp | 53 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/to_row_vector.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/to_vector.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_gen_inv_quad_form_ldlt.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_gen_quad_form.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_inv_quad_form_ldlt.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/typedefs.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/unit_vector_constrain.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/unit_vector_free.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/value_of.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/value_of_rec.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/variance.hpp | 18 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/fun/welford_var_estimator.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient_auto.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian.hpp | 83 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian_auto.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian_helper.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_combine.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp | 130 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_mpi.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_reduce.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/functor/mpi_parallel_call.hpp | 37 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/append_return_type.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/as_array_or_scalar.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/as_column_vector_or_scalar.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/as_scalar.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/broadcast_array.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/index_type.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/is_constant.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/is_eigen.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/operands_and_partials.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/scalar_type.hpp | 59 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/seq_view.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/meta/value_type.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp | 73 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_rng.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_glm_lpmf.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_log.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_lpmf.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_rng.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp | 103 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_rng.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_log.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_lpdf.hpp | 45 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_rng.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_lpdf.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_rng.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_lpdf.hpp | 59 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_rng.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_lpdf.hpp | 83 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_rng.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_log.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_lpdf.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_lpdf.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_rng.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_lpdf.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_lpdf.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_log.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_lpdf.hpp | 70 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_rng.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_lpdf.hpp | 47 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_rng.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_rng.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_lpdf.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_rng.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_log.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_lpmf.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_rng.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_log.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp | 103 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/normal_id_glm_log.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/normal_id_glm_lpdf.hpp | 137 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_glm_lpmf.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_log.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_lpmf.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_rng.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_log.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_lpmf.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp | 65 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_log.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_lpdf.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_rng.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/mat/vectorize/apply_scalar_unary.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/meta.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal.hpp | 41 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_2F1_converges.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_3F2_converges.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_bounded.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_size.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_sizes.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_finite.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater_or_equal.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_less.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_less_or_equal.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_nonnegative.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_not_nan.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_finite.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/check_size_match.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error_vec.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument_vec.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/is_less_or_equal.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/is_not_nan.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/is_positive.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/is_scal_finite.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/is_size_match.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/out_of_range.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/err/system_error.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/F32.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi_approx.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/abs.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/acosh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/as_bool.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/asinh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/atanh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_first_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_second_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/beta.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/binary_log_loss.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/binomial_coefficient_log.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/boost_policy.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/cbrt.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/choose.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/common_type.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/constants.hpp | 57 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/corr_constrain.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/corr_free.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/digamma.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/distance.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/divide.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/erf.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/erfc.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/exp.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/exp2.hpp | 18 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/expm1.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/falling_factorial.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/fdim.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/fill.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/finite_diff_stepsize.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/fma.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/fmax.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/fmin.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/gamma_p.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/gamma_q.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_2F1.hpp | 21 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_F32.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_inc_beta.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_beta.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_gamma.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_lower_inc_gamma.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/hypot.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/ibeta.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/identity_constrain.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/identity_free.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/if_else.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_dda.hpp | 43 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_ddb.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_ddz.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/int_step.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inv.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_Phi.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_cloglog.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_logit.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_sqrt.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_square.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/is_any_nan.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/is_inf.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/is_integer.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nan.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nonpositive_integer.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/is_uninitialized.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/lb_constrain.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/lb_free.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/lbeta.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/ldexp.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/lgamma.hpp | 67 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/lmgamma.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/locscale_constrain.hpp | 23 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/locscale_free.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_exp.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_inv_logit.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p_exp.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log2.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log_diff_exp.hpp | 21 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log_falling_factorial.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit_diff.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log_mix.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log_modified_bessel_first_kind.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log_rising_factorial.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/log_sum_exp.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_and.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_eq.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_gt.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_gte.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_lt.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_lte.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_negation.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_neq.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_or.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/logit.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/lub_constrain.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/lub_free.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_first_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_second_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/modulus.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/multiply_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/offset_multiplier_constrain.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/offset_multiplier_free.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/owens_t.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/positive_constrain.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/positive_free.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/primitive_value.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/prob_constrain.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/prob_free.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_elements.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_scalar.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_scalar_type.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/rising_factorial.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/round.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/sign.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/size_zero.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/sqrt.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/square.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/squared_distance.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/step.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/sum.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/tgamma.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/trigamma.hpp | 23 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/trunc.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/ub_constrain.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/ub_free.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of_rec.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/StdVectorBuilder.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorBuilder.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorBuilderHelper.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/ad_promotable.hpp | 146 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/bool_constant.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/child_type.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/conjunction.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_fvar.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_std_vector.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_vector.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/disjunction.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/include_summand.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/index_type.hpp | 18 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/is_constant.hpp | 21 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/is_eigen.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/is_fvar.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/is_var.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/is_var_or_arithmetic.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/is_vector.hpp | 77 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/is_vector_like.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/operands_and_partials.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/partials_return_type.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/partials_type.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/promote_args.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/require_generics.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/return_type.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_seq_view.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_type.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_type_pre.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/meta/value_type.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_ccdf_log.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf_log.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lccdf.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lcdf.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_log.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_lpmf.hpp | 45 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_ccdf_log.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf_log.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lccdf.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lcdf.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_log.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lpmf.hpp | 140 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf.hpp | 64 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lccdf.hpp | 50 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lcdf.hpp | 50 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lpdf.hpp | 95 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lccdf.hpp | 53 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lcdf.hpp | 52 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_lpdf.hpp | 71 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_proportion_rng.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_ccdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lccdf.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lcdf.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_log.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_log.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_lpmf.hpp | 51 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lpmf.hpp | 50 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lccdf.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lcdf.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_log.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lpdf.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_ccdf_log.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf_log.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lccdf.hpp | 37 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lcdf.hpp | 37 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_log.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lpdf.hpp | 74 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lccdf.hpp | 37 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lcdf.hpp | 37 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lpdf.hpp | 56 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_ccdf_log.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf_log.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lccdf.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lcdf.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_log.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lpdf.hpp | 53 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_rng.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_ccdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lccdf.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lcdf.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_log.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lpdf.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lccdf.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lcdf.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_log.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lpdf.hpp | 85 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf.hpp | 56 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lccdf.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lcdf.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lpdf.hpp | 69 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lccdf.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lcdf.hpp | 31 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_log.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lpdf.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_rng.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_log.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_lpmf.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_rng.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_ccdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_cdf.hpp | 53 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_cdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lccdf.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lcdf.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lpdf.hpp | 73 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf.hpp | 65 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lccdf.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lcdf.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_log.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lpdf.hpp | 86 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf.hpp | 51 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lccdf.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lcdf.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_log.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lpdf.hpp | 72 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_rng.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lccdf.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lcdf.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_log.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lpdf.hpp | 88 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf.hpp | 44 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lcdf.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_lpmf.hpp | 63 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lpmf.hpp | 67 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp | 45 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lcdf.hpp | 49 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lpmf.hpp | 93 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf.hpp | 55 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lccdf.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lcdf.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_log.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lpdf.hpp | 51 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_sufficient_log.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_sufficient_lpdf.hpp | 45 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lccdf.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lcdf.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_log.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lpdf.hpp | 81 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf.hpp | 66 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lccdf.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lcdf.hpp | 37 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_log.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lpdf.hpp | 68 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_rng.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_ccdf_log.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf_log.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lccdf.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lcdf.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_log.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_lpmf.hpp | 56 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lpmf.hpp | 46 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_ccdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lccdf.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lcdf.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lpdf.hpp | 45 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf.hpp | 59 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lccdf.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lcdf.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_log.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lpdf.hpp | 93 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf.hpp | 50 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lccdf.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lcdf.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lpdf.hpp | 56 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_rng.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/std_normal_log.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/std_normal_lpdf.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_ccdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf.hpp | 85 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf_log.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lccdf.hpp | 60 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lcdf.hpp | 64 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_log.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lpdf.hpp | 78 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lccdf.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lcdf.hpp | 34 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_log.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lpdf.hpp | 51 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_rng.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_log.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_lpdf.hpp | 60 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_rng.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_ccdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf.hpp | 51 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf_log.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lccdf.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lcdf.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_log.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lpdf.hpp | 91 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_rng.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_log.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_lpdf.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/arr.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/arr/fun/log_sum_exp.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/arr/fun/sum.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/arr/fun/to_var.hpp | 21 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/arr/functor/coupled_ode_system.hpp | 509 - StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/arr/functor/integrate_1d.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/autodiffstackstorage.hpp | 146 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/build_vari_array.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/chainable_alloc.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/chainablestack.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/empty_nested.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/gevv_vvv_vari.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/grad.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/init_chainablestack.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/matrix_vari.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/nested_size.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_addition.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_divide_equal.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_division.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_minus_equal.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_multiplication.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_multiply_equal.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_plus_equal.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_subtraction.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_unary_decrement.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_unary_increment.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_unary_negative.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/operator_unary_plus.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/precomputed_gradients.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/print_stack.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/recover_memory.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/recover_memory_nested.hpp | 29 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/set_zero_all_adjoints.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/start_nested.hpp | 14 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/stored_gradient_vari.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/var.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/vari.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/core/vector_vari.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp | 185 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_alloc.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_factor.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/cholesky_decompose.hpp | 79 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/columns_dot_product.hpp | 18 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/columns_dot_self.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/cov_exp_quad.hpp | 43 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/crossprod.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/determinant.hpp | 40 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/divide.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/dot_product.hpp | 100 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/dot_self.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/gp_exp_quad_cov.hpp | 56 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp | 35 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/grad.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/initialize_variable.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/inverse.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant.hpp | 25 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant_ldlt.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant_spd.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/log_softmax.hpp | 62 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/log_sum_exp.hpp | 26 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/matrix_exp_multiply.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left.hpp | 225 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp | 133 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_spd.hpp | 182 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_tri.hpp | 354 - StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/multiply.hpp | 371 - StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/multiply_lower_tri_self_transpose.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/ordered_constrain.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/positive_ordered_constrain.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/quad_form.hpp | 23 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/quad_form_sym.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/rows_dot_product.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/scale_matrix_exp_multiply.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/sd.hpp | 48 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/simplex_constrain.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/softmax.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/squared_distance.hpp | 69 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/stan_print.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/sum.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/tcrossprod.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/to_var.hpp | 75 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_gen_inv_quad_form_ldlt.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_gen_quad_form.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp | 78 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_quad_form.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/typedefs.hpp | 27 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/unit_vector_constrain.hpp | 28 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/fun/variance.hpp | 39 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/adj_jac_apply.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_fp.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_newton.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver_powell.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_system.hpp | 33 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_integrator.hpp | 92 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_ode_data.hpp | 32 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_utils.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/gradient.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_forward_system.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_integrator.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/idas_system.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_dae.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_bdf.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/jacobian.hpp | 21 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/kinsol_data.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/kinsol_solve.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/map_rect_concurrent.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/functor/map_rect_reduce.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/meta/operands_and_partials.hpp | 30 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/mat/vectorize/apply_scalar_unary.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/meta.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/Phi.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/Phi_approx.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/abs.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/acos.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/acosh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/as_bool.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/asin.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/asinh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/atan.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/atan2.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/atanh.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/bessel_first_kind.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/bessel_second_kind.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/beta.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/binary_log_loss.hpp | 8 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_fpclassify.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isfinite.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isnormal.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/calculate_chain.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/cbrt.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/ceil.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/cos.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/cosh.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/digamma.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/erf.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/erfc.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/exp.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/exp2.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/expm1.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/fabs.hpp | 10 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/falling_factorial.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/fdim.hpp | 16 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/floor.hpp | 5 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/fma.hpp | 42 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/fmax.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/fmin.hpp | 20 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/fmod.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_p.hpp | 13 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_q.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/grad_inc_beta.hpp | 9 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/hypot.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/ibeta.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/if_else.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/inc_beta.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/inv.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_Phi.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_cloglog.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_logit.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_sqrt.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_square.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/is_inf.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/is_nan.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/is_uninitialized.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/lbeta.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/ldexp.hpp |only StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/lgamma.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/lmgamma.hpp | 6 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log10.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_exp.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_inv_logit.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log1p.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log1p_exp.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log2.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log_diff_exp.hpp | 24 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log_falling_factorial.hpp | 15 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log_inv_logit.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log_inv_logit_diff.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log_mix.hpp | 17 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log_rising_factorial.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/log_sum_exp.hpp | 18 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/logit.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/modified_bessel_first_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/modified_bessel_second_kind.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/multiply_log.hpp | 22 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/owens_t.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/pow.hpp | 36 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/primitive_value.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/rising_factorial.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/round.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/sin.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/sinh.hpp | 2 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/sqrt.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/square.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/squared_distance.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/step.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/tan.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/tanh.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/tgamma.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/to_var.hpp | 19 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/trigamma.hpp | 3 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/trunc.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/value_of.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/fun/value_of_rec.hpp | 1 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/meta/is_var.hpp | 12 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/meta/operands_and_partials.hpp | 4 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/rev/scal/meta/partials_type.hpp | 11 StanHeaders-2.21.0-3/StanHeaders/inst/include/stan/math/version.hpp | 7 StanHeaders-2.21.0-3/StanHeaders/man |only StanHeaders-2.21.0-3/StanHeaders/src/Makevars | 10 StanHeaders-2.21.0-3/StanHeaders/src/Makevars.win | 3 StanHeaders-2.21.0-3/StanHeaders/src/kinsol |only StanHeaders-2.21.0-3/StanHeaders/tests/rstan.R | 12 StanHeaders-2.21.0-3/StanHeaders/vignettes/stanmath.Rmd | 62 1751 files changed, 42490 insertions(+), 43148 deletions(-)
Title: Data and Variable Transformation Functions
Description: Collection of miscellaneous utility functions, supporting data
transformation tasks like recoding, dichotomizing or grouping variables,
setting and replacing missing values. The data transformation functions
also support labelled data, and all integrate seamlessly into a
'tidyverse'-workflow.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Iago Giné-Vázquez [ctb],
Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 2.8.4 dated 2020-04-03 and 2.8.5 dated 2020-05-28
DESCRIPTION | 6 MD5 | 32 - NAMESPACE | 1 NEWS.md | 11 R/descr.R | 22 - R/prop_table.R | 35 + R/rec.R | 24 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/design_philosophy.html | 414 +++++++++---------- inst/doc/exploringdatasets.html | 306 ++++++-------- inst/doc/recodingvariables.html | 838 +++++++++++++++++++--------------------- man/descr.Rd | 190 ++++----- man/find_var.Rd | 258 ++++++------ man/flat_table.Rd | 7 man/rec.Rd | 11 tests/testthat/test-rec.R | 2 17 files changed, 1083 insertions(+), 1074 deletions(-)
Title: Interface to the Global 'Biodiversity' Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility ('GBIF';
<https://www.gbif.org/developer/summary>). 'GBIF' is a database
of species occurrence records from sources all over the globe.
'rgbif' includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the 'GBIF'
tile map service to make 'rasters' summarizing huge amounts of data.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Damiano Oldoni [aut] (<https://orcid.org/0000-0003-3445-7562>),
Vijay Barve [ctb] (<https://orcid.org/0000-0002-4852-2567>),
Peter Desmet [ctb] (<https://orcid.org/0000-0002-8442-8025>),
Laurens Geffert [ctb],
Dan Mcglinn [ctb] (<https://orcid.org/0000-0003-2359-3526>),
Karthik Ram [ctb] (<https://orcid.org/0000-0002-0233-1757>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rgbif versions 2.2.0 dated 2020-03-09 and 2.3 dated 2020-05-28
DESCRIPTION | 12 ++-- MD5 | 64 ++++++++++++------------ NAMESPACE | 1 NEWS.md | 18 ++++++ R/download_predicate_dsl.R | 18 ++++-- R/name_usage.r | 2 R/occ_data.R | 14 +++-- R/occ_download_get.r | 9 +-- R/occ_download_import.R | 13 +++- R/occ_download_meta.R | 19 ++++--- R/occ_download_queue.R | 18 ++++-- R/occ_search.r | 26 ++++++--- R/rgbif-package.r | 1 README.md | 80 +++++++++++++++--------------- build/vignette.rds |binary inst/doc/downloads.html | 4 - inst/doc/issues.Rmd | 2 inst/doc/issues.html | 6 +- inst/doc/rgbif.Rmd | 6 +- inst/doc/rgbif.html | 7 +- inst/doc/taxonomic_names.html | 4 - man/DownReq.Rd | 5 + man/GbifQueue.Rd | 9 +++ man/occ_data.Rd | 34 ++++++++++++ man/occ_download_get.Rd | 7 +- man/occ_download_import.Rd | 16 ++++-- man/occ_download_queue.Rd | 14 ++++- man/occ_search.Rd | 22 +++++++- tests/fixtures/occ_download_meta.yml |only tests/testthat/test-occ_download_import.R |only tests/testthat/test-occ_download_meta.R |only tests/testthat/test-occ_download_prep.R |only tests/testthat/test-predicate_builders.R | 20 +++++++ vignettes/issues.Rmd | 2 vignettes/rgbif.Rmd | 6 +- 35 files changed, 312 insertions(+), 147 deletions(-)
Title: Bayesian Summary Data Models for Mendelian Randomization Studies
Description: Bayesian estimation of inverse variance weighted (IVW), Burgess
et al. (2013) <doi:10.1002/gepi.21758>, and MR-Egger, Bowden et
al. (2015) <doi:10.1093/ije/dyv080>, summary data models for Mendelian
randomization analyses.
Author: Okezie Uche-Ikonne [aut, cre] (<https://orcid.org/0000-0002-8461-8099>),
Frank Dondelinger [aut] (<https://orcid.org/0000-0003-1816-6300>),
Tom Palmer [aut] (<https://orcid.org/0000-0003-4655-4511>)
Maintainer: Okezie Uche-Ikonne <o.uche-ikonne@lancaster.ac.uk>
Diff between mrbayes versions 0.1.0 dated 2019-09-04 and 0.2.0 dated 2020-05-28
DESCRIPTION | 35 +++++++----- MD5 | 63 +++++++++++++++------- NAMESPACE | 7 ++ NEWS.md |only R/do_data.R | 17 ++--- R/mr_egger_rjags.R | 32 ++++++----- R/mr_egger_stan.R |only R/mr_ivw_rjags.R | 25 +++++--- R/mr_ivw_stan.R |only R/mr_radialegger_rjags.R | 33 ++++++----- R/mr_radialegger_stan.R |only R/mrbayes-package.r | 10 +++ R/stanmodels.R |only README.md | 27 ++++++++- configure |only configure.win |only data/do_data.rda |binary inst |only man/bmi_insulin.Rd | 6 +- man/do_data.Rd | 23 +++----- man/mr_egger_rjags.Rd | 42 +++++++++----- man/mr_egger_stan.Rd |only man/mr_ivw_rjags.Rd | 32 +++++++---- man/mr_ivw_stan.Rd |only man/mr_radialegger_rjags.Rd | 42 +++++++++----- man/mr_radialegger_stan.Rd |only man/mrbayes-package.Rd | 6 +- src |only tests/testthat/test-mr_egger_rjags.R | 83 ++++++++++++----------------- tests/testthat/test-mr_egger_stan.R |only tests/testthat/test-mr_ivw_rjags.R | 52 +++++------------- tests/testthat/test-mr_ivw_stan.R |only tests/testthat/test-mr_radialegger_rjags.R | 80 ++++++++++++--------------- tests/testthat/test-mr_radialegger_stan.R |only 34 files changed, 352 insertions(+), 263 deletions(-)
Title: Geographical Detectors
Description: Geographical detectors for measuring spatial stratified heterogeneity,
as described in Jinfeng Wang (2010) <doi:10.1080/13658810802443457> and
Jinfeng Wang (2016) <doi:10.1016/j.ecolind.2016.02.052>. Includes the
optimal discretization of continuous data, four primary functions of
geographical detectors, comparison of size effects of spatial unit and
the visualizations of results. To use the package and to refer the
descriptions of the package, methods and case datasets, please cite
Yongze Song (2020) <doi:10.1080/15481603.2020.1760434>.
Author: Yongze Song [aut, cre] (<https://orcid.org/0000-0003-3420-9622>)
Maintainer: Yongze Song <yongze.song@postgrad.curtin.edu.au>
Diff between GD versions 1.7 dated 2019-08-21 and 1.8 dated 2020-05-28
DESCRIPTION | 17 - MD5 | 27 +- R/disc.R | 18 + R/optidisc.R | 1 R/zzz.R |only build/vignette.rds |binary inst/CITATION | 38 +-- inst/doc/GD.R | 50 +++- inst/doc/GD.Rmd | 192 +++++++++++++++--- inst/doc/GD.html | 511 ++++++++++++++++++++++++++++++++++++-------------- vignettes/Figure1.png |only vignettes/Figure2.png |only vignettes/Figure3.png |only vignettes/Figure4.png |only vignettes/Figure5.png |only vignettes/Figure6.png |only vignettes/Figure7.png |only vignettes/Figure8.png |only vignettes/GD.Rmd | 192 +++++++++++++++--- 19 files changed, 789 insertions(+), 257 deletions(-)
Title: Model Audit - Verification, Validation, and Error Analysis
Description: Provides an easy to use unified interface for creating validation plots for any model.
The 'auditor' helps to avoid repetitive work consisting of writing code needed to create residual plots.
This visualizations allow to asses and compare the goodness of fit, performance, and similarity of models.
Author: Alicja Gosiewska [aut, cre] (<https://orcid.org/0000-0001-6563-5742>),
Przemyslaw Biecek [aut, ths] (<https://orcid.org/0000-0001-8423-1823>),
Hubert Baniecki [aut] (<https://orcid.org/0000-0001-6661-5364>),
Tomasz Mikołajczyk [aut],
Michal Burdukiewicz [ctb],
Szymon Maksymiuk [ctb]
Maintainer: Alicja Gosiewska <alicjagosiewska@gmail.com>
Diff between auditor versions 1.2.0 dated 2020-02-18 and 1.3.0 dated 2020-05-28
DESCRIPTION | 14 - MD5 | 305 +++++++++++++++--------------- NAMESPACE | 4 NEWS.md | 12 + R/audit.R | 58 ++--- R/check_residuals.R | 32 +-- R/model_cooksdistance.R | 24 +- R/model_evaluation.R | 55 +++-- R/model_halfnormal.R | 27 +- R/model_performance.R | 31 +-- R/model_residual.R | 29 +- R/plot.R | 58 +++-- R/plotD3.R | 27 +- R/plotD3_acf.R | 12 - R/plotD3_autocorrelation.R | 10 R/plotD3_cooksdistance.R | 10 R/plotD3_halfnormal.R | 11 - R/plotD3_lift.R | 30 +- R/plotD3_prediction.R | 14 - R/plotD3_rec.R | 14 - R/plotD3_residual.R | 13 - R/plotD3_roc.R | 37 ++- R/plotD3_rroc.R | 9 R/plotD3_scalelocation.R | 24 +- R/plot_acf.R | 16 - R/plot_autocorrelation.R | 12 - R/plot_cooksdistance.R | 11 - R/plot_correlation.R | 17 - R/plot_halfnormal.R | 13 - R/plot_lift.R | 37 +-- R/plot_pca.R | 22 -- R/plot_prc.R |only R/plot_prediction.R | 22 -- R/plot_radar.R | 24 -- R/plot_rec.R | 12 - R/plot_residual.R | 19 - R/plot_residual_boxplot.R | 20 - R/plot_residual_density.R | 27 +- R/plot_roc.R | 36 +-- R/plot_rroc.R | 14 - R/plot_scalelocation.R | 17 - R/plot_tsecdf.R | 12 - R/print.R | 76 +++---- R/score.R | 5 R/score_F1.R | 61 +++--- R/score_acc.R | 65 ++++-- R/score_auc.R | 88 +++++--- R/score_auprc.R |only R/score_cooksdistance.R | 8 R/score_dw.R | 25 +- R/score_gini.R | 55 +++-- R/score_halfnormal.R | 16 - R/score_mae.R | 23 +- R/score_mse.R | 22 +- R/score_peak.R | 24 +- R/score_precision.R | 59 +++-- R/score_r2.R | 14 - R/score_rec.R | 28 +- R/score_recall.R | 60 +++-- R/score_rmse.R | 21 +- R/score_rroc.R | 21 +- R/score_runs.R | 21 +- R/score_specificity.R | 61 +++--- R/support_function_plot.R | 3 R/theme_drwhy.R | 13 - inst/CITATION | 21 -- inst/doc/model_evaluation_audit.R | 45 ++-- inst/doc/model_evaluation_audit.Rmd | 33 +-- inst/doc/model_evaluation_audit.html | 53 ++--- inst/doc/model_fit_audit.R | 14 - inst/doc/model_fit_audit.html | 6 inst/doc/model_performance_audit.R | 14 - inst/doc/model_performance_audit.html | 47 +++- inst/doc/model_residuals_audit.R | 46 ++-- inst/doc/model_residuals_audit.Rmd | 1 inst/doc/model_residuals_audit.html | 32 +-- inst/doc/observation_influence_audit.R | 12 - inst/doc/observation_influence_audit.html | 2 man/audit.Rd | 55 ++--- man/check_residuals.Rd | 16 - man/check_residuals_autocorrelation.Rd | 6 man/check_residuals_outliers.Rd | 6 man/figures/demo.png |only man/figures/logo.png |binary man/model_cooksdistance.Rd | 20 + man/model_evaluation.Rd | 21 +- man/model_halfnormal.Rd | 21 +- man/model_performance.Rd | 32 ++- man/model_residual.Rd | 29 +- man/plot.Rd | 55 ++--- man/plotD3.Rd | 26 +- man/plotD3_acf.Rd | 16 - man/plotD3_autocorrelation.Rd | 38 ++- man/plotD3_cooksdistance.Rd | 30 +- man/plotD3_halfnormal.Rd | 14 - man/plotD3_lift.Rd | 28 +- man/plotD3_prediction.Rd | 44 ++-- man/plotD3_rec.Rd | 12 - man/plotD3_residual.Rd | 45 +++- man/plotD3_roc.Rd | 37 ++- man/plotD3_rroc.Rd | 9 man/plotD3_scalelocation.Rd | 52 +++-- man/plot_acf.Rd | 14 - man/plot_autocorrelation.Rd | 10 man/plot_cooksdistance.Rd | 9 man/plot_correlation.Rd | 13 - man/plot_halfnormal.Rd | 10 man/plot_lift.Rd | 26 +- man/plot_pca.Rd | 18 - man/plot_prediction.Rd | 24 -- man/plot_radar.Rd | 19 - man/plot_rec.Rd | 9 man/plot_residual.Rd | 38 ++- man/plot_residual_boxplot.Rd | 18 - man/plot_residual_density.Rd | 20 - man/plot_roc.Rd | 71 +++++- man/plot_rroc.Rd | 10 man/plot_scalelocation.Rd | 26 +- man/plot_tsecdf.Rd | 32 ++- man/print.auditor_model_cooksdistance.Rd | 4 man/print.auditor_model_evaluation.Rd | 14 - man/print.auditor_model_halfnormal.Rd | 12 - man/print.auditor_model_performance.Rd | 14 - man/print.auditor_model_residual.Rd | 13 - man/print.auditor_score.Rd | 14 - man/score.Rd | 5 man/score_acc.Rd | 25 +- man/score_auc.Rd | 22 +- man/score_auprc.Rd |only man/score_cooksdistance.Rd | 4 man/score_dw.Rd | 16 - man/score_f1.Rd | 26 +- man/score_gini.Rd | 21 +- man/score_halfnormal.Rd | 12 - man/score_mae.Rd | 14 - man/score_mse.Rd | 15 - man/score_one_minus_acc.Rd | 26 +- man/score_one_minus_auc.Rd | 23 +- man/score_one_minus_auprc.Rd |only man/score_one_minus_f1.Rd | 25 +- man/score_one_minus_gini.Rd | 22 +- man/score_one_minus_precision.Rd | 24 +- man/score_one_minus_recall.Rd | 24 +- man/score_one_minus_specificity.Rd | 26 +- man/score_peak.Rd | 17 + man/score_precision.Rd | 25 +- man/score_r2.Rd | 15 - man/score_rec.Rd | 17 + man/score_recall.Rd | 26 +- man/score_rmse.Rd | 14 - man/score_rroc.Rd | 14 - man/score_runs.Rd | 14 - man/score_specificity.Rd | 23 +- tests/testthat/test_scores.R | 7 vignettes/model_evaluation_audit.Rmd | 33 +-- vignettes/model_residuals_audit.Rmd | 1 156 files changed, 2144 insertions(+), 1728 deletions(-)
Title: Sound Analysis and Synthesis
Description: Functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur <sueur@mnhn.fr> [cre, au], Thierry Aubin [au],
Caroline Simonis [au], Laurent Lellouch [main ctrb],
Ethan C. Brown [ctrb], Marion Depraetere [ctrb],
Camille Desjonqueres [ctrb], Francois Fabianek [ctrb],
Amandine Gasc [ctrb], Eric Kasten [ctrb], Stefanie LaZerte [ctrb],
Jonathan Lees [ctrb], Jean Marchal [ctrb], Andre Mikulec [ctrb],
Sandrine Pavoine [ctrb], David Pinaud [ctrb], Alicia Stotz [ctrb],
Luis J. Villanueva-Rivera [ctrb], Zev Ross [ctrb],
Carl G. Witthoft [ctrb], Hristo Zhivomirov [ctrb].
Maintainer: Jerome Sueur <sueur@mnhn.fr>
Diff between seewave versions 2.1.5 dated 2019-12-06 and 2.1.6 dated 2020-05-28
DESCRIPTION | 13 MD5 | 44 +- NEWS | 20 + R/seewave.r | 639 ++++++++++++++++++++++++++++++++---------- build/vignette.rds |binary inst/doc/seewave_IO.R | 1 inst/doc/seewave_IO.pdf |binary inst/doc/seewave_analysis.R | 1 inst/doc/seewave_analysis.pdf |binary man/ACI.Rd | 2 man/audiomoth.Rd |only man/audiomoth.rename.Rd |only man/beep.Rd |only man/gammatone.Rd |only man/lts.Rd | 17 - man/melfilterbank.Rd | 2 man/pastew.Rd | 5 man/read.audacity.Rd |only man/seewave.internal.Rd | 1 man/seewave.package.Rd | 9 man/songmeter.Rd | 31 +- man/specflux.Rd |only man/spectro.Rd | 10 man/spectro3D.Rd | 3 man/synth.Rd | 10 man/timelapse.Rd |only man/write.audacity.Rd |only 27 files changed, 604 insertions(+), 204 deletions(-)
Title: Converting Transport Data from GTFS Format to GPS-Like Records
Description: Convert general transit feed specification (GTFS) data to global positioning system (GPS) records in 'data.table' format. It also has some functions to subset GTFS data in time and space and to convert both representations to simple feature format.
Author: Rafael H. M. Pereira [aut] (<https://orcid.org/0000-0003-2125-7465>),
Pedro R. Andrade [aut, cre] (<https://orcid.org/0000-0001-8675-4046>),
Joao Bazzo [aut] (<https://orcid.org/0000-0003-4536-5006>),
Marcin Stepniak [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro R. Andrade <pedro.andrade@inpe.br>
Diff between gtfs2gps versions 1.1-0 dated 2020-04-12 and 1.2-0 dated 2020-05-28
gtfs2gps-1.1-0/gtfs2gps/R/gps_as_sf.R |only gtfs2gps-1.1-0/gtfs2gps/man/gps_as_sf.Rd |only gtfs2gps-1.1-0/gtfs2gps/tests/testthat/test_gps_as_sf.R |only gtfs2gps-1.2-0/gtfs2gps/DESCRIPTION | 14 gtfs2gps-1.2-0/gtfs2gps/MD5 | 68 gtfs2gps-1.2-0/gtfs2gps/NAMESPACE | 10 gtfs2gps-1.2-0/gtfs2gps/R/append_height.R | 3 gtfs2gps-1.2-0/gtfs2gps/R/filter_gtfs.R | 279 ++- gtfs2gps-1.2-0/gtfs2gps/R/gps_as_sflinestring.R |only gtfs2gps-1.2-0/gtfs2gps/R/gps_as_sfpoints.R |only gtfs2gps-1.2-0/gtfs2gps/R/gtfs2gps.R | 22 gtfs2gps-1.2-0/gtfs2gps/R/merge_gtfs_feeds.R |only gtfs2gps-1.2-0/gtfs2gps/R/mod_updates.R | 30 gtfs2gps-1.2-0/gtfs2gps/R/read_gtfs.R | 40 gtfs2gps-1.2-0/gtfs2gps/R/simplify_shapes.R |only gtfs2gps-1.2-0/gtfs2gps/R/test_gtfs_freq.R | 4 gtfs2gps-1.2-0/gtfs2gps/R/zzz.R | 5 gtfs2gps-1.2-0/gtfs2gps/build/vignette.rds |binary gtfs2gps-1.2-0/gtfs2gps/inst/doc/intro_to_gtfs2gps.R | 30 gtfs2gps-1.2-0/gtfs2gps/inst/doc/intro_to_gtfs2gps.Rmd | 34 gtfs2gps-1.2-0/gtfs2gps/inst/doc/intro_to_gtfs2gps.html | 700 +++++++++- gtfs2gps-1.2-0/gtfs2gps/inst/extdata/warsaw.zip |only gtfs2gps-1.2-0/gtfs2gps/man/append_height.Rd | 3 gtfs2gps-1.2-0/gtfs2gps/man/filter_by_agency_id.Rd | 5 gtfs2gps-1.2-0/gtfs2gps/man/filter_by_route_id.Rd |only gtfs2gps-1.2-0/gtfs2gps/man/filter_by_route_type.Rd |only gtfs2gps-1.2-0/gtfs2gps/man/filter_by_shape_id.Rd | 5 gtfs2gps-1.2-0/gtfs2gps/man/filter_single_trip.Rd | 5 gtfs2gps-1.2-0/gtfs2gps/man/filter_valid_stop_times.Rd | 5 gtfs2gps-1.2-0/gtfs2gps/man/filter_week_days.Rd | 5 gtfs2gps-1.2-0/gtfs2gps/man/gps_as_sflinestring.Rd |only gtfs2gps-1.2-0/gtfs2gps/man/gps_as_sfpoints.Rd |only gtfs2gps-1.2-0/gtfs2gps/man/merge_gtfs_feeds.Rd |only gtfs2gps-1.2-0/gtfs2gps/man/read_gtfs.Rd | 5 gtfs2gps-1.2-0/gtfs2gps/man/remove_invalid.Rd | 21 gtfs2gps-1.2-0/gtfs2gps/man/simplify_shapes.Rd |only gtfs2gps-1.2-0/gtfs2gps/tests/testthat/test_append_height.R | 3 gtfs2gps-1.2-0/gtfs2gps/tests/testthat/test_filter_gtfs.R | 67 gtfs2gps-1.2-0/gtfs2gps/tests/testthat/test_gps_as_sflinestring.R |only gtfs2gps-1.2-0/gtfs2gps/tests/testthat/test_gps_as_sfpoints.R |only gtfs2gps-1.2-0/gtfs2gps/tests/testthat/test_merge_gtfs_feeds.R |only gtfs2gps-1.2-0/gtfs2gps/tests/testthat/test_read_gtfs.R | 15 gtfs2gps-1.2-0/gtfs2gps/tests/testthat/test_simplify_shapes.R |only gtfs2gps-1.2-0/gtfs2gps/vignettes/intro_to_gtfs2gps.Rmd | 34 44 files changed, 1134 insertions(+), 278 deletions(-)
Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the Econometrics & Technometrics.
Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, Malmquist productivity analysis, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, Ph.D. <technometrics.org>
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 3.3 dated 2020-04-29 and 3.4 dated 2020-05-28
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 11 +++++++++++ R/target.spec.dea.R | 47 +++++++++++++++++++++++++++-------------------- man/target.spec.dea.Rd | 3 ++- 5 files changed, 49 insertions(+), 30 deletions(-)
Title: Tidy Complex 'JSON'
Description: Turn complex 'JSON' data into tidy data frames.
Author: Jeremy Stanley [aut],
Cole Arendt [aut, cre]
Maintainer: Cole Arendt <cole@rstudio.com>
Diff between tidyjson versions 0.2.4 dated 2019-12-02 and 0.3.0 dated 2020-05-28
tidyjson-0.2.4/tidyjson/inst/doc/multiple-apis.R |only tidyjson-0.2.4/tidyjson/inst/doc/multiple-apis.Rmd |only tidyjson-0.2.4/tidyjson/inst/doc/multiple-apis.html |only tidyjson-0.2.4/tidyjson/vignettes/multiple-apis.Rmd |only tidyjson-0.3.0/tidyjson/DESCRIPTION | 17 tidyjson-0.3.0/tidyjson/MD5 | 123 - tidyjson-0.3.0/tidyjson/NAMESPACE | 10 tidyjson-0.3.0/tidyjson/NEWS.md | 34 tidyjson-0.3.0/tidyjson/R/append_values.R | 18 tidyjson-0.3.0/tidyjson/R/enter_object.R | 2 tidyjson-0.3.0/tidyjson/R/gather.R | 3 tidyjson-0.3.0/tidyjson/R/is_json.R | 1 tidyjson-0.3.0/tidyjson/R/json_complexity.R | 2 tidyjson-0.3.0/tidyjson/R/json_lengths.R | 2 tidyjson-0.3.0/tidyjson/R/json_schema.R | 14 tidyjson-0.3.0/tidyjson/R/json_structure.R | 6 tidyjson-0.3.0/tidyjson/R/json_types.R | 3 tidyjson-0.3.0/tidyjson/R/path.R | 1 tidyjson-0.3.0/tidyjson/R/spread_all.R | 8 tidyjson-0.3.0/tidyjson/R/spread_values.R | 3 tidyjson-0.3.0/tidyjson/R/tbl_json.R | 254 ++- tidyjson-0.3.0/tidyjson/R/tidyjson-package.R | 7 tidyjson-0.3.0/tidyjson/R/utils.R | 3 tidyjson-0.3.0/tidyjson/README.md | 140 +- tidyjson-0.3.0/tidyjson/build/vignette.rds |binary tidyjson-0.3.0/tidyjson/inst/doc/introduction-to-tidyjson.R | 48 tidyjson-0.3.0/tidyjson/inst/doc/introduction-to-tidyjson.html | 412 +++--- tidyjson-0.3.0/tidyjson/inst/doc/visualizing-json.R | 50 tidyjson-0.3.0/tidyjson/inst/doc/visualizing-json.Rmd | 12 tidyjson-0.3.0/tidyjson/inst/doc/visualizing-json.html | 670 +++++----- tidyjson-0.3.0/tidyjson/inst/json_array.gif |only tidyjson-0.3.0/tidyjson/inst/json_object.gif |only tidyjson-0.3.0/tidyjson/inst/json_value.gif |only tidyjson-0.3.0/tidyjson/man/allowed_json_types.Rd | 4 tidyjson-0.3.0/tidyjson/man/append_values.Rd | 12 tidyjson-0.3.0/tidyjson/man/append_values_factory.Rd | 1 tidyjson-0.3.0/tidyjson/man/append_values_type.Rd | 1 tidyjson-0.3.0/tidyjson/man/as_tibble.Rd | 1 tidyjson-0.3.0/tidyjson/man/as_tibble.tbl_json.Rd | 4 tidyjson-0.3.0/tidyjson/man/bind_rows.Rd | 39 tidyjson-0.3.0/tidyjson/man/commits.Rd | 4 tidyjson-0.3.0/tidyjson/man/companies.Rd | 4 tidyjson-0.3.0/tidyjson/man/determine_types.Rd | 1 tidyjson-0.3.0/tidyjson/man/gather_factory.Rd | 9 tidyjson-0.3.0/tidyjson/man/has_names.Rd | 1 tidyjson-0.3.0/tidyjson/man/is_data_list.Rd | 1 tidyjson-0.3.0/tidyjson/man/is_json_factory.Rd | 1 tidyjson-0.3.0/tidyjson/man/issues.Rd | 4 tidyjson-0.3.0/tidyjson/man/json_factory.Rd | 1 tidyjson-0.3.0/tidyjson/man/json_get.Rd |only tidyjson-0.3.0/tidyjson/man/json_get_column.Rd |only tidyjson-0.3.0/tidyjson/man/json_schema.Rd | 8 tidyjson-0.3.0/tidyjson/man/json_structure.Rd | 16 tidyjson-0.3.0/tidyjson/man/list_or_dots.Rd | 1 tidyjson-0.3.0/tidyjson/man/my_unlist.Rd | 1 tidyjson-0.3.0/tidyjson/man/path.Rd | 1 tidyjson-0.3.0/tidyjson/man/tbl_json.Rd | 14 tidyjson-0.3.0/tidyjson/man/tidyjson.Rd | 6 tidyjson-0.3.0/tidyjson/man/worldbank.Rd | 4 tidyjson-0.3.0/tidyjson/man/wrap_dplyr_verb.Rd | 5 tidyjson-0.3.0/tidyjson/tests/testthat/test-append_values.R | 20 tidyjson-0.3.0/tidyjson/tests/testthat/test-gather_object.R | 18 tidyjson-0.3.0/tidyjson/tests/testthat/test-json_structure.R | 25 tidyjson-0.3.0/tidyjson/tests/testthat/test-read_json.R | 8 tidyjson-0.3.0/tidyjson/tests/testthat/test-spread_all.R | 14 tidyjson-0.3.0/tidyjson/tests/testthat/test-tbl_json.R | 214 ++- tidyjson-0.3.0/tidyjson/vignettes/visualizing-json.Rmd | 12 67 files changed, 1359 insertions(+), 939 deletions(-)
Title: Domain Specific MetaData Scheme
Description: Forms the core for developing own domain specific metadata schemes.
It contains the basic functionality needed for all metadata schemes based on the
'dmdScheme'. See R.M. Krug and O.L. Petchey (2019) <DOI:10.5281/zenodo.3581970>.
Author: Rainer M. Krug [aut, cre] (<https://orcid.org/0000-0002-7490-0066>),
Owen L. Petchey [ctb] (<https://orcid.org/0000-0002-7724-1633>)
Maintainer: Rainer M. Krug <Rainer.Krug@uzh.ch>
Diff between dmdScheme versions 1.1.2 dated 2020-04-30 and 1.1.3 dated 2020-05-28
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/validate_func.R | 13 +++++++++++++ inst/doc/Howto_create_new_scheme.html | 10 +++++----- inst/doc/minimum_requirements_dmdscheme.html | 4 ++-- inst/doc/r_package_introduction.html | 14 +++++++------- 6 files changed, 35 insertions(+), 22 deletions(-)
Title: Antimicrobial Resistance Analysis
Description: Functions to simplify the analysis and prediction of Antimicrobial
Resistance (AMR) and to work with microbial and antimicrobial properties by
using evidence-based methods, like those defined by Leclercq et al. (2013)
<doi:10.1111/j.1469-0691.2011.03703.x> and the Clinical and Laboratory
Standards Institute (2014) <isbn: 1-56238-899-1>.
Author: Matthijs S. Berends [aut, cre]
(<https://orcid.org/0000-0001-7620-1800>),
Christian F. Luz [aut, ctb] (<https://orcid.org/0000-0001-5809-5995>),
Alexander W. Friedrich [aut, ths]
(<https://orcid.org/0000-0003-4881-038X>),
Bhanu N. M. Sinha [aut, ths] (<https://orcid.org/0000-0003-1634-0010>),
Casper J. Albers [aut, ths] (<https://orcid.org/0000-0002-9213-6743>),
Corinna Glasner [aut, ths] (<https://orcid.org/0000-0003-1241-1328>),
Judith M. Fonville [ctb],
Erwin E. A. Hassing [ctb],
Eric H. L. C. M. Hazenberg [ctb],
Annick Lenglet [ctb],
Bart C. Meijer [ctb],
Sofia Ny [ctb],
Dennis Souverein [ctb]
Maintainer: Matthijs S. Berends <m.s.berends@umcg.nl>
Diff between AMR versions 1.1.0 dated 2020-04-15 and 1.2.0 dated 2020-05-28
AMR-1.1.0/AMR/R/extended.R |only AMR-1.1.0/AMR/R/freq.R |only AMR-1.1.0/AMR/R/progress_estimated.R |only AMR-1.1.0/AMR/R/read.4d.R |only AMR-1.1.0/AMR/data/datalist |only AMR-1.1.0/AMR/man/extended-functions.Rd |only AMR-1.1.0/AMR/man/read.4D.Rd |only AMR-1.1.0/AMR/man/reexports.Rd |only AMR-1.1.0/AMR/tests/testthat/test-extended.R |only AMR-1.1.0/AMR/tests/testthat/test-freq.R |only AMR-1.1.0/AMR/tests/testthat/test-read.4d.R |only AMR-1.2.0/AMR/DESCRIPTION | 20 AMR-1.2.0/AMR/MD5 | 264 ++-- AMR-1.2.0/AMR/NAMESPACE | 168 -- AMR-1.2.0/AMR/NEWS.md | 40 AMR-1.2.0/AMR/R/aa_helper_functions.R | 287 ++++ AMR-1.2.0/AMR/R/aa_helper_functions_dplyr.R |only AMR-1.2.0/AMR/R/ab.R | 52 AMR-1.2.0/AMR/R/ab_property.R | 34 AMR-1.2.0/AMR/R/age.R | 3 AMR-1.2.0/AMR/R/amr.R | 2 AMR-1.2.0/AMR/R/atc_online.R | 50 AMR-1.2.0/AMR/R/availability.R | 3 AMR-1.2.0/AMR/R/bug_drug_combinations.R | 135 +- AMR-1.2.0/AMR/R/catalogue_of_life.R | 24 AMR-1.2.0/AMR/R/count.R | 73 - AMR-1.2.0/AMR/R/data.R | 26 AMR-1.2.0/AMR/R/deprecated.R | 7 AMR-1.2.0/AMR/R/disk.R | 60 AMR-1.2.0/AMR/R/eucast_rules.R | 280 ++-- AMR-1.2.0/AMR/R/filter_ab_class.R | 82 - AMR-1.2.0/AMR/R/first_isolate.R | 307 ++--- AMR-1.2.0/AMR/R/ggplot_pca.R | 48 AMR-1.2.0/AMR/R/ggplot_rsi.R | 116 - AMR-1.2.0/AMR/R/globals.R | 6 AMR-1.2.0/AMR/R/guess_ab_col.R | 42 AMR-1.2.0/AMR/R/join_microorganisms.R | 22 AMR-1.2.0/AMR/R/key_antibiotics.R | 71 - AMR-1.2.0/AMR/R/kurtosis.R | 7 AMR-1.2.0/AMR/R/lifecycle.R | 24 AMR-1.2.0/AMR/R/like.R | 38 AMR-1.2.0/AMR/R/mdro.R | 213 +-- AMR-1.2.0/AMR/R/mic.R | 59 AMR-1.2.0/AMR/R/mo.R | 1209 ++++++++------------ AMR-1.2.0/AMR/R/mo_property.R | 38 AMR-1.2.0/AMR/R/mo_source.R | 149 +- AMR-1.2.0/AMR/R/pca.R | 39 AMR-1.2.0/AMR/R/proportion.R | 139 +- AMR-1.2.0/AMR/R/resistance_predict.R | 163 +- AMR-1.2.0/AMR/R/rsi.R | 159 +- AMR-1.2.0/AMR/R/rsi_calc.R | 203 +-- AMR-1.2.0/AMR/R/rsi_df.R | 32 AMR-1.2.0/AMR/R/skewness.R | 7 AMR-1.2.0/AMR/R/sysdata.rda |binary AMR-1.2.0/AMR/R/translate.R | 21 AMR-1.2.0/AMR/R/zzz.R | 85 - AMR-1.2.0/AMR/README.md | 32 AMR-1.2.0/AMR/build/vignette.rds |binary AMR-1.2.0/AMR/data/antibiotics.rda |binary AMR-1.2.0/AMR/data/example_isolates.rda |binary AMR-1.2.0/AMR/data/microorganisms.codes.rda |binary AMR-1.2.0/AMR/data/microorganisms.old.rda |binary AMR-1.2.0/AMR/data/microorganisms.rda |binary AMR-1.2.0/AMR/data/rsi_translation.rda |binary AMR-1.2.0/AMR/inst/doc/AMR.R | 25 AMR-1.2.0/AMR/inst/doc/AMR.Rmd | 41 AMR-1.2.0/AMR/inst/doc/AMR.html | 769 ++++++------ AMR-1.2.0/AMR/inst/doc/EUCAST.Rmd | 2 AMR-1.2.0/AMR/inst/doc/EUCAST.html | 86 - AMR-1.2.0/AMR/inst/doc/MDR.R | 4 AMR-1.2.0/AMR/inst/doc/MDR.Rmd | 4 AMR-1.2.0/AMR/inst/doc/MDR.html | 191 +-- AMR-1.2.0/AMR/inst/doc/PCA.R | 1 AMR-1.2.0/AMR/inst/doc/PCA.Rmd | 1 AMR-1.2.0/AMR/inst/doc/PCA.html | 207 +-- AMR-1.2.0/AMR/inst/doc/WHONET.R | 1 AMR-1.2.0/AMR/inst/doc/WHONET.Rmd | 3 AMR-1.2.0/AMR/inst/doc/WHONET.html | 86 - AMR-1.2.0/AMR/inst/doc/resistance_predict.Rmd | 4 AMR-1.2.0/AMR/inst/doc/resistance_predict.html | 191 +-- AMR-1.2.0/AMR/man/AMR-deprecated.Rd | 5 AMR-1.2.0/AMR/man/ab_property.Rd | 16 AMR-1.2.0/AMR/man/age.Rd | 4 AMR-1.2.0/AMR/man/age_groups.Rd | 4 AMR-1.2.0/AMR/man/antibiotics.Rd | 2 AMR-1.2.0/AMR/man/as.ab.Rd | 2 AMR-1.2.0/AMR/man/as.disk.Rd | 6 AMR-1.2.0/AMR/man/as.mic.Rd | 5 AMR-1.2.0/AMR/man/as.mo.Rd | 7 AMR-1.2.0/AMR/man/as.rsi.Rd | 17 AMR-1.2.0/AMR/man/atc_online.Rd | 4 AMR-1.2.0/AMR/man/availability.Rd | 6 AMR-1.2.0/AMR/man/bug_drug_combinations.Rd | 4 AMR-1.2.0/AMR/man/catalogue_of_life.Rd | 10 AMR-1.2.0/AMR/man/catalogue_of_life_version.Rd | 5 AMR-1.2.0/AMR/man/count.Rd | 74 - AMR-1.2.0/AMR/man/eucast_rules.Rd | 12 AMR-1.2.0/AMR/man/filter_ab_class.Rd | 10 AMR-1.2.0/AMR/man/first_isolate.Rd | 18 AMR-1.2.0/AMR/man/g.test.Rd | 2 AMR-1.2.0/AMR/man/ggplot_pca.Rd | 6 AMR-1.2.0/AMR/man/ggplot_rsi.Rd | 103 - AMR-1.2.0/AMR/man/guess_ab_col.Rd | 2 AMR-1.2.0/AMR/man/join.Rd | 12 AMR-1.2.0/AMR/man/key_antibiotics.Rd | 11 AMR-1.2.0/AMR/man/kurtosis.Rd | 2 AMR-1.2.0/AMR/man/lifecycle.Rd | 28 AMR-1.2.0/AMR/man/like.Rd | 21 AMR-1.2.0/AMR/man/mdro.Rd | 5 AMR-1.2.0/AMR/man/microorganisms.Rd | 15 AMR-1.2.0/AMR/man/microorganisms.codes.Rd | 4 AMR-1.2.0/AMR/man/microorganisms.old.Rd | 7 AMR-1.2.0/AMR/man/mo_property.Rd | 10 AMR-1.2.0/AMR/man/mo_source.Rd | 42 AMR-1.2.0/AMR/man/p_symbol.Rd | 2 AMR-1.2.0/AMR/man/pca.Rd | 6 AMR-1.2.0/AMR/man/proportion.Rd | 140 +- AMR-1.2.0/AMR/man/resistance_predict.Rd | 33 AMR-1.2.0/AMR/man/skewness.Rd | 2 AMR-1.2.0/AMR/man/translate.Rd | 10 AMR-1.2.0/AMR/tests/testthat/Rplots.pdf |binary AMR-1.2.0/AMR/tests/testthat/test-ab.R | 6 AMR-1.2.0/AMR/tests/testthat/test-ab_property.R | 3 AMR-1.2.0/AMR/tests/testthat/test-count.R | 2 AMR-1.2.0/AMR/tests/testthat/test-data.R | 20 AMR-1.2.0/AMR/tests/testthat/test-deprecated.R | 3 AMR-1.2.0/AMR/tests/testthat/test-eucast_rules.R | 44 AMR-1.2.0/AMR/tests/testthat/test-filter_ab_class.R | 5 AMR-1.2.0/AMR/tests/testthat/test-first_isolate.R | 106 - AMR-1.2.0/AMR/tests/testthat/test-mdro.R | 148 +- AMR-1.2.0/AMR/tests/testthat/test-mo.R | 19 AMR-1.2.0/AMR/tests/testthat/test-mo_property.R | 21 AMR-1.2.0/AMR/tests/testthat/test-pca.R | 21 AMR-1.2.0/AMR/vignettes/AMR.Rmd | 41 AMR-1.2.0/AMR/vignettes/EUCAST.Rmd | 2 AMR-1.2.0/AMR/vignettes/MDR.Rmd | 4 AMR-1.2.0/AMR/vignettes/PCA.Rmd | 1 AMR-1.2.0/AMR/vignettes/WHONET.Rmd | 3 AMR-1.2.0/AMR/vignettes/resistance_predict.Rmd | 4 139 files changed, 3750 insertions(+), 3832 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.11.1 dated 2020-05-15 and 0.11.2 dated 2020-05-28
DESCRIPTION | 8 - MD5 | 12 +- NEWS.md | 4 R/mm4_format_nfold.R | 9 + inst/doc/introduction.html | 160 +++++++++++++++---------------- tests/testthat/test_mm4_1_format_nfold.R | 28 +---- tests/testthat/test_uc1_usecases.R | 38 +++++++ 7 files changed, 150 insertions(+), 109 deletions(-)
Title: Tools for Developing Binary Logistic Regression Models
Description: Tools designed to make it easier for beginner and intermediate users to build and validate
binary logistic regression models. Includes bivariate analysis, comprehensive regression output,
model fit statistics, variable selection procedures, model validation techniques and a 'shiny'
app for interactive model building.
Author: Aravind Hebbali [aut, cre] (<https://orcid.org/0000-0001-9220-9669>)
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between blorr versions 0.2.2 dated 2020-02-03 and 0.3.0 dated 2020-05-28
DESCRIPTION | 17 MD5 | 219 ++--- NAMESPACE | 66 - NEWS.md | 4 R/blr-backward-elimination.R | 155 +--- R/blr-bivariate-analysis.R | 218 ++--- R/blr-collinearity-diagnostics.R | 106 -- R/blr-error-messages.R | 64 - R/blr-forward-selection.R | 120 +-- R/blr-gains-table.R | 193 ++--- R/blr-hosmer-lemeshow-test.R | 107 +- R/blr-launch-app.R | 1 R/blr-linktest.R | 24 R/blr-lorenz-curve.R | 46 - R/blr-lrtest.R | 42 - R/blr-model-fit-stats.R | 139 --- R/blr-model-validation.R | 110 ++ R/blr-multi-model-fit-stats.R | 35 R/blr-output.R | 469 ++---------- R/blr-pairs.R | 44 - R/blr-plots-data.R | 142 +-- R/blr-plots.R | 80 -- R/blr-regress-compute.R | 19 R/blr-regress.R | 5 R/blr-residual-diagnostics.R | 77 +- R/blr-roc-curve.R | 22 R/blr-stepwise-backward-regression.R | 41 - R/blr-stepwise-forward-regression.R | 51 - R/blr-stepwise-regression.R | 104 -- R/blr-stepwise-selection.R | 49 - R/blr-utils.R | 147 --- R/blr-woe-iv.R | 123 +-- R/zzz.R | 11 README.md | 87 -- build/vignette.rds |binary inst/doc/introduction.R | 52 - inst/doc/introduction.html | 300 +++----- man/bank_marketing.Rd | 6 man/blorr.Rd | 1 man/blr_bivariate_analysis.Rd | 14 man/blr_confusion_matrix.Rd | 25 man/blr_decile_capture_rate.Rd | 31 man/blr_decile_lift_chart.Rd | 30 man/blr_gains_table.Rd | 33 man/blr_gini_index.Rd | 17 man/blr_ks_chart.Rd | 29 man/blr_linktest.Rd | 2 man/blr_lorenz_curve.Rd | 30 man/blr_model_fit_stats.Rd | 18 man/blr_multi_model_fit_stats.Rd | 18 man/blr_pairs.Rd | 19 man/blr_plot_c_fitted.Rd | 8 man/blr_plot_c_leverage.Rd | 8 man/blr_plot_deviance_fitted.Rd | 11 man/blr_plot_deviance_residual.Rd | 10 man/blr_plot_dfbetas_panel.Rd | 4 man/blr_plot_diag_c.Rd | 10 man/blr_plot_diag_cbar.Rd | 10 man/blr_plot_diag_difchisq.Rd | 10 man/blr_plot_diag_difdev.Rd | 10 man/blr_plot_diag_fit.Rd | 9 man/blr_plot_diag_influence.Rd | 9 man/blr_plot_diag_leverage.Rd | 9 man/blr_plot_difchisq_fitted.Rd | 8 man/blr_plot_difchisq_leverage.Rd | 8 man/blr_plot_difdev_fitted.Rd | 8 man/blr_plot_difdev_leverage.Rd | 10 man/blr_plot_fitted_leverage.Rd | 10 man/blr_plot_leverage.Rd | 9 man/blr_plot_leverage_fitted.Rd | 10 man/blr_plot_pearson_residual.Rd | 10 man/blr_plot_residual_fitted.Rd | 7 man/blr_roc_curve.Rd | 36 man/blr_rsq_adj_count.Rd | 18 man/blr_rsq_cox_snell.Rd | 18 man/blr_rsq_effron.Rd | 18 man/blr_rsq_mcfadden_adj.Rd | 18 man/blr_rsq_mckelvey_zavoina.Rd | 18 man/blr_rsq_nagelkerke.Rd | 18 man/blr_segment.Rd | 10 man/blr_segment_dist.Rd | 25 man/blr_segment_twoway.Rd | 13 man/blr_step_aic_backward.Rd | 23 man/blr_step_aic_both.Rd | 9 man/blr_step_aic_forward.Rd | 23 man/blr_step_p_backward.Rd | 17 man/blr_step_p_both.Rd | 7 man/blr_step_p_forward.Rd | 16 man/blr_test_hosmer_lemeshow.Rd | 18 man/blr_test_lr.Rd | 21 man/blr_woe_iv.Rd | 28 man/blr_woe_iv_stats.Rd | 12 man/hsb2.Rd | 6 man/stepwise.Rd | 4 tests/figs/test-blr-plots-r/ks-chart.svg | 4 tests/figs/test-blr-plots-r/segment-distribution-plot.svg | 72 - tests/testthat/test-backward-elimination.R | 12 tests/testthat/test-bivariate-analysis.R | 123 +-- tests/testthat/test-blr-gains-table.R | 13 tests/testthat/test-blr-lrtest.R | 13 tests/testthat/test-blr-pairs.R | 5 tests/testthat/test-blr-plots.R | 122 --- tests/testthat/test-coll-diag.R | 38 - tests/testthat/test-forward-selection.R | 12 tests/testthat/test-hosmer-lemeshow.R | 5 tests/testthat/test-linktest.R | 11 tests/testthat/test-model-fit-stats.R | 41 - tests/testthat/test-model-validation.R |only tests/testthat/test-stepwise-selection.R | 522 ++++++-------- tests/testthat/test-utils.R | 38 - tools/README-kschart-1.png |binary 111 files changed, 2330 insertions(+), 3027 deletions(-)
Title: Create Interactive Trelliscope Displays
Description: Trelliscope is a scalable, flexible, interactive approach to visualizing data (Hafen, 2013 <doi:10.1109/LDAV.2013.6675164>). This package provides methods that make it easy to create a Trelliscope display specification for TrelliscopeJS. High-level functions are provided for creating displays from within 'tidyverse' or 'ggplot2' workflows. Low-level functions are also provided for creating new interfaces.
Author: Ryan Hafen [aut, cre] (<https://orcid.org/0000-0002-5516-8367>),
Barret Schloerke [aut]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between trelliscopejs versions 0.2.4 dated 2020-02-10 and 0.2.5 dated 2020-05-28
trelliscopejs-0.2.4/trelliscopejs/man/panel.Rd |only trelliscopejs-0.2.5/trelliscopejs/DESCRIPTION | 10 trelliscopejs-0.2.5/trelliscopejs/MD5 | 51 +- trelliscopejs-0.2.5/trelliscopejs/NAMESPACE | 1 trelliscopejs-0.2.5/trelliscopejs/NEWS.md | 1 trelliscopejs-0.2.5/trelliscopejs/R/cog.R | 48 +- trelliscopejs-0.2.5/trelliscopejs/R/facet_trelliscope.R | 3 trelliscopejs-0.2.5/trelliscopejs/R/helpers.R | 20 trelliscopejs-0.2.5/trelliscopejs/R/tidy.R | 117 ++--- trelliscopejs-0.2.5/trelliscopejs/R/trelliscope.R | 2 trelliscopejs-0.2.5/trelliscopejs/build/vignette.rds |binary trelliscopejs-0.2.5/trelliscopejs/inst/doc/trelliscopejs.R | 22 - trelliscopejs-0.2.5/trelliscopejs/inst/doc/trelliscopejs.Rmd | 44 +- trelliscopejs-0.2.5/trelliscopejs/inst/doc/trelliscopejs.html | 210 +++++----- trelliscopejs-0.2.5/trelliscopejs/man/cog.Rd | 18 trelliscopejs-0.2.5/trelliscopejs/man/cog_href.Rd | 16 trelliscopejs-0.2.5/trelliscopejs/man/cogs.Rd | 21 - trelliscopejs-0.2.5/trelliscopejs/man/facet_trelliscope.Rd | 4 trelliscopejs-0.2.5/trelliscopejs/man/map2_cog.Rd | 11 trelliscopejs-0.2.5/trelliscopejs/man/map2_plot.Rd | 22 - trelliscopejs-0.2.5/trelliscopejs/man/map_cog.Rd | 15 trelliscopejs-0.2.5/trelliscopejs/man/map_plot.Rd | 28 - trelliscopejs-0.2.5/trelliscopejs/man/mpg_labels.Rd | 4 trelliscopejs-0.2.5/trelliscopejs/man/panels.Rd | 12 trelliscopejs-0.2.5/trelliscopejs/man/trelliscope.Rd | 53 -- trelliscopejs-0.2.5/trelliscopejs/tests/testthat/test-trelliscope.R | 110 ++--- trelliscopejs-0.2.5/trelliscopejs/vignettes/trelliscopejs.Rmd | 44 +- 27 files changed, 426 insertions(+), 461 deletions(-)
Title: Drawing Survival Curves using 'ggplot2'
Description: Contains the function 'ggsurvplot()' for drawing easily beautiful
and 'ready-to-publish' survival curves with the 'number at risk' table
and 'censoring count plot'. Other functions are also available to plot
adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
Author: Alboukadel Kassambara [aut, cre],
Marcin Kosinski [aut],
Przemyslaw Biecek [aut],
Scheipl Fabian [ctb]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between survminer versions 0.4.6 dated 2019-09-03 and 0.4.7 dated 2020-05-28
DESCRIPTION | 13 MD5 | 82 +- NAMESPACE | 1 NEWS.md | 77 + R/ggsurvplot_df.R | 2 R/surv_group_by.R | 5 R/utilities.R | 4 build/vignette.rds |binary inst/doc/Informative_Survival_Plots.Rmd | 5 inst/doc/Informative_Survival_Plots.html | 407 +++++++++- inst/doc/Playing_with_fonts_and_texts.html | 401 +++++++++ inst/doc/Specifiying_weights_in_log-rank_comparisons.html | 399 +++++++++ man/BMT.Rd | 6 man/BRCAOV.survInfo.Rd | 6 man/arrange_ggsurvplots.Rd | 14 man/ggadjustedcurves.Rd | 27 man/ggcompetingrisks.Rd | 13 man/ggcoxdiagnostics.Rd | 37 man/ggcoxfunctional.Rd | 23 man/ggcoxzph.Rd | 18 man/ggflexsurvplot.Rd | 16 man/ggforest.Rd | 12 man/ggsurvevents.Rd | 14 man/ggsurvplot.Rd | 42 - man/ggsurvplot_add_all.Rd | 10 man/ggsurvplot_combine.Rd | 22 man/ggsurvplot_df.Rd | 42 - man/ggsurvplot_facet.Rd | 30 man/ggsurvplot_list.Rd | 10 man/ggsurvtable.Rd | 50 - man/ggsurvtheme.Rd | 19 man/myeloma.Rd | 6 man/pairwise_survdiff.Rd | 3 man/surv_cutpoint.Rd | 13 man/surv_pvalue.Rd | 10 tools/README-ggplot2-basic-survival-plot-1.png |binary tools/README-ggplot2-customized-survival-plot-1.png |binary tools/README-ggplot2-more-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-platinium-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-platinium-premium-customized-survival-plot-1.png |binary vignettes/Informative_Survival_Plots.Rmd | 5 42 files changed, 1601 insertions(+), 243 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ.4' library. The 'GDAL' and 'PROJ.4' libraries are external to the package, and, when installing the package from source, must be correctly installed first. From 'rgdal' 1.4-1, provision is made for 'PROJ6' accommodation, with 'PROJ6' functionality to follow; from 1.4-1 'rgdal' will build and function when 'PROJ' >= 6. From 'rgdal' 1.5-1, attempts are made to adapt the handling of coordinate reference systems to 'GDAL' 3 and 'PROJ' 6, using 'WKT2_2019' strings. Both 'GDAL' raster and 'OGR' vector map data can be imported into R, and 'GDAL' raster data and 'OGR' vector data exported. Use is made of classes defined in the 'sp' package. Windows and Mac Intel OS X binaries (including 'GDAL', 'PROJ.4' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.4-8 dated 2019-11-27 and 1.5-8 dated 2020-05-28
ChangeLog | 644 ++++++++ DESCRIPTION | 15 MD5 | 112 - NAMESPACE | 17 R/AAA.R | 70 R/Class-CRSx.R | 102 + R/gdal.R | 104 + R/list_coordOps.R |only R/ogr.R | 102 + R/ogr_sp.R | 251 +++ R/ogr_write.R | 9 R/project.R | 549 ++++++- R/sgdf_gdal.R | 7 R/sp_gdal.R | 88 - R/subs.R | 5 R/wrappers.R | 52 build/vignette.rds |binary configure | 1918 +++++++++++++++++++++++++- configure.ac | 136 + data/GridsDatums.rda |binary inst/ChangeLog | 644 ++++++++ inst/SVN_VERSION | 2 inst/doc/CRS_projections_transformations.R |only inst/doc/CRS_projections_transformations.Rmd |only inst/doc/CRS_projections_transformations.html |only inst/doc/OGR_shape_encoding.R | 1 inst/doc/OGR_shape_encoding.pdf |binary inst/doc/PROJ6_GDAL3.R |only inst/doc/PROJ6_GDAL3.Rmd |only inst/doc/PROJ6_GDAL3.html |only inst/vectors/airports.gfs |only inst/vectors/b_pump.gpkg |only man/CRS-class.Rd | 19 man/GDALDriver-class.Rd | 10 man/GDALRasterBand-class.Rd | 3 man/GridsDatums.Rd | 2 man/list_coordOps.Rd |only man/llgrid.Rd | 1 man/projInfo.Rd | 10 man/project.Rd | 27 man/readGDAL.Rd | 39 man/readOGR.Rd | 35 man/showWKT.Rd | 66 man/spTransform-methods.Rd | 44 man/wrappers.Rd | 4 man/writeOGR.Rd | 6 src/Makevars.win | 62 src/OGR_write.cpp | 106 + src/gdal-bindings.cpp | 204 ++ src/init.c | 15 src/inverser.c | 2 src/ogr_proj.cpp | 359 ++++ src/proj_info6.cpp | 710 +++++++++ src/proj_network7.cpp |only src/projectit.cpp | 47 src/rgdal.h | 39 tests/srs_rendering.R | 68 tests/srs_rendering.Rout.save | 159 +- tests/test_proj.R | 11 tests/test_proj.Rout.save | 38 tools/winlibs.R | 9 vignettes/CRS_projections_transformations.Rmd |only vignettes/PROJ.bib |only vignettes/PROJ6_GDAL3.Rmd |only 64 files changed, 6401 insertions(+), 522 deletions(-)
Title: Partitioned Symmetric Matrices
Description: A matrix-like class to represent a symmetric matrix partitioned
into file-backed blocks.
Author: Gustavo de los Campos [aut],
Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <cran@agrueneberg.info>
Diff between symDMatrix versions 2.0.2 dated 2018-08-25 and 2.1.0 dated 2020-05-28
symDMatrix-2.0.2/symDMatrix/R/package.R |only symDMatrix-2.0.2/symDMatrix/man/examples |only symDMatrix-2.0.2/symDMatrix/man/initialize-symDMatrix-method.Rd |only symDMatrix-2.0.2/symDMatrix/tests/testthat |only symDMatrix-2.0.2/symDMatrix/tests/testthat.R |only symDMatrix-2.1.0/symDMatrix/DESCRIPTION | 15 symDMatrix-2.1.0/symDMatrix/MD5 | 48 +- symDMatrix-2.1.0/symDMatrix/NAMESPACE | 3 symDMatrix-2.1.0/symDMatrix/NEWS.md | 15 symDMatrix-2.1.0/symDMatrix/R/symDMatrix.R | 186 ---------- symDMatrix-2.1.0/symDMatrix/README.md | 20 - symDMatrix-2.1.0/symDMatrix/inst/CITATION |only symDMatrix-2.1.0/symDMatrix/inst/tinytest |only symDMatrix-2.1.0/symDMatrix/man/as.symDMatrix.Rd | 27 - symDMatrix-2.1.0/symDMatrix/man/as.symDMatrix.character.Rd | 40 +- symDMatrix-2.1.0/symDMatrix/man/as.symDMatrix.matrix.Rd | 57 +-- symDMatrix-2.1.0/symDMatrix/man/blockIndex.Rd | 20 - symDMatrix-2.1.0/symDMatrix/man/blockSize.Rd | 33 - symDMatrix-2.1.0/symDMatrix/man/load.symDMatrix.Rd | 26 - symDMatrix-2.1.0/symDMatrix/man/nBlocks.Rd | 18 symDMatrix-2.1.0/symDMatrix/man/symDMatrix-class.Rd | 38 -- symDMatrix-2.1.0/symDMatrix/man/symDMatrix-package.Rd | 37 + symDMatrix-2.1.0/symDMatrix/man/symDMatrix.Rd |only symDMatrix-2.1.0/symDMatrix/tests/tinytest.R |only 24 files changed, 225 insertions(+), 358 deletions(-)
Title: Plot Multiple Sequence Alignment using 'ggplot2'
Description: Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
Lang Zhou [aut],
Huina Huang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggmsa versions 0.0.2 dated 2020-01-08 and 0.0.4 dated 2020-05-28
ggmsa-0.0.2/ggmsa/inst/extdata/dna_seq.fasta |only ggmsa-0.0.4/ggmsa/DESCRIPTION | 13 - ggmsa-0.0.4/ggmsa/MD5 | 56 ++++--- ggmsa-0.0.4/ggmsa/NAMESPACE | 31 +++ ggmsa-0.0.4/ggmsa/NEWS.md | 32 +++- ggmsa-0.0.4/ggmsa/R/available.R |only ggmsa-0.0.4/ggmsa/R/color_else.R | 25 +-- ggmsa-0.0.4/ggmsa/R/facet_msa.R |only ggmsa-0.0.4/ggmsa/R/geom_GC.R |only ggmsa-0.0.4/ggmsa/R/geom_asterisk.R |only ggmsa-0.0.4/ggmsa/R/geom_msa.R | 43 ++++- ggmsa-0.0.4/ggmsa/R/geom_seed.R |only ggmsa-0.0.4/ggmsa/R/geom_seqlogo.R |only ggmsa-0.0.4/ggmsa/R/ggmotif.R |only ggmsa-0.0.4/ggmsa/R/ggmsa.R | 68 +++++++- ggmsa-0.0.4/ggmsa/R/methods-ggplot_add.R |only ggmsa-0.0.4/ggmsa/R/msa_data.R | 78 ++++----- ggmsa-0.0.4/ggmsa/R/prepare_fasta.R | 4 ggmsa-0.0.4/ggmsa/R/sysdata.rda |binary ggmsa-0.0.4/ggmsa/build/vignette.rds |binary ggmsa-0.0.4/ggmsa/inst/doc/ggmsa.R | 93 ++++++----- ggmsa-0.0.4/ggmsa/inst/doc/ggmsa.Rmd | 144 +++++++++--------- ggmsa-0.0.4/ggmsa/inst/doc/ggmsa.html | 215 ++++++++++++++------------- ggmsa-0.0.4/ggmsa/inst/extdata/seedSample.fa |only ggmsa-0.0.4/ggmsa/man/available_colors.Rd |only ggmsa-0.0.4/ggmsa/man/available_fonts.Rd |only ggmsa-0.0.4/ggmsa/man/available_msa.Rd |only ggmsa-0.0.4/ggmsa/man/facet_msa.Rd |only ggmsa-0.0.4/ggmsa/man/figures |only ggmsa-0.0.4/ggmsa/man/geom_GC.Rd |only ggmsa-0.0.4/ggmsa/man/geom_asterisk.Rd |only ggmsa-0.0.4/ggmsa/man/geom_msa.Rd | 25 ++- ggmsa-0.0.4/ggmsa/man/geom_seed.Rd |only ggmsa-0.0.4/ggmsa/man/geom_seqlogo.Rd |only ggmsa-0.0.4/ggmsa/man/ggmotif.Rd |only ggmsa-0.0.4/ggmsa/man/ggmsa.Rd | 44 ++++- ggmsa-0.0.4/ggmsa/vignettes/Extensions |only ggmsa-0.0.4/ggmsa/vignettes/ggmsa.Rmd | 144 +++++++++--------- 38 files changed, 620 insertions(+), 395 deletions(-)
Title: R Bayesian Evidence Synthesis Tools
Description: Tool-set to support Bayesian evidence synthesis. This
includes meta-analysis, (robust) prior derivation from historical
data, operating characteristics and analysis (1 and 2 sample
cases). Please refer to Neuenschwander et al. (2010)
<doi:10.1177/1740774509356002> and Schmidli et al. (2014)
<doi:10.1111/biom.12242> for details on the methodology.
Author: Novartis Pharma AG [cph],
Sebastian Weber [aut, cre],
Beat Neuenschwander [ctb],
Heinz Schmidli [ctb],
Baldur Magnusson [ctb],
Yue Li [ctb],
Satrajit Roychoudhury [ctb],
Trustees of Columbia University [cph] (R/stanmodels.R, configure,
configure.win)
Maintainer: Sebastian Weber <sebastian.weber@novartis.com>
Diff between RBesT versions 1.6-0 dated 2020-03-28 and 1.6-1 dated 2020-05-28
DESCRIPTION | 10 - MD5 | 87 +++++---- R/dlink.R | 22 +- R/gMAP.R | 22 +- R/integrate_logit_log.R | 57 +++++- R/log_inv_logit.R |only R/mix.R | 9 - R/mixess.R | 15 + R/mixplot.R | 14 - R/predict_gMAP.R | 26 +- R/sysdata.rda |binary inst/NEWS | 6 inst/doc/PoS_codata.Rmd | 10 - inst/doc/PoS_codata.html | 10 - inst/doc/PoS_interim.Rmd | 11 - inst/doc/PoS_interim.html | 10 - inst/doc/RBesT.pdf |binary inst/doc/customizing_plots.R | 9 - inst/doc/customizing_plots.Rmd | 19 +- inst/doc/customizing_plots.html | 238 ++++++++++++--------------- inst/doc/introduction.Rmd | 10 - inst/doc/introduction.html | 10 - inst/doc/introduction_normal.Rmd | 10 - inst/doc/introduction_normal.html | 10 - inst/doc/robustMAP.html | 8 inst/doc/variances_MAP.Rmd | 10 - inst/doc/variances_MAP.html | 10 - inst/sbc/calibration.md5 | 6 inst/sbc/make_reference_rankhist.R | 122 +++++++++++-- inst/sbc/sbc_report.R | 37 +--- inst/sbc/sbc_report.html | 324 +++++++++++++++++++++++++++---------- inst/sbc/sbc_report_plots.R |only inst/sbc/sbc_tools.R | 68 +++++++ inst/stan/gMAP.stan | 6 man/integrate_density_log.Rd | 2 man/log_inv_logit.Rd |only src/stanExports_gMAP.h | 20 +- tests/testthat/test-oc2S.R | 22 ++ tests/testthat/test-utils.R | 5 tools/build.sh | 4 vignettes/PoS_codata.Rmd | 10 - vignettes/PoS_interim.Rmd | 11 - vignettes/customizing_plots.Rmd | 19 +- vignettes/introduction.Rmd | 10 - vignettes/introduction_normal.Rmd | 10 - vignettes/variances_MAP.Rmd | 10 - 46 files changed, 843 insertions(+), 486 deletions(-)
Title: Tidy Verbs for Fast Data Manipulation
Description: A toolkit of tidy data manipulation verbs with 'data.table' as the backend.
Combining the merits of syntax elegance from 'dplyr' and computing performance from 'data.table',
'tidyfst' intends to provide users with state-of-the-art data manipulation tools with least pain.
This package is an extension of 'data.table'. While enjoying a tidy syntax,
it also wraps combinations of efficient functions to facilitate frequently-used data operations.
Author: Tian-Yuan Huang [aut, cre] (<https://orcid.org/0000-0002-3591-4203>)
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Diff between tidyfst versions 0.9.6 dated 2020-05-02 and 0.9.7 dated 2020-05-28
tidyfst-0.9.6/tidyfst/R/join_dt.R |only tidyfst-0.9.6/tidyfst/R/slice_dt.R |only tidyfst-0.9.6/tidyfst/man/slice_dt.Rd |only tidyfst-0.9.7/tidyfst/DESCRIPTION | 6 - tidyfst-0.9.7/tidyfst/MD5 | 22 +-- tidyfst-0.9.7/tidyfst/NAMESPACE | 13 +- tidyfst-0.9.7/tidyfst/R/complete.R | 1 tidyfst-0.9.7/tidyfst/R/join.R |only tidyfst-0.9.7/tidyfst/R/nest_dt.R | 2 tidyfst-0.9.7/tidyfst/R/separate.R | 53 ++++++--- tidyfst-0.9.7/tidyfst/R/slice.R |only tidyfst-0.9.7/tidyfst/inst/doc/chinese_tutorial.html | 20 +-- tidyfst-0.9.7/tidyfst/man/join.Rd | 107 ++++++++----------- tidyfst-0.9.7/tidyfst/man/separate_dt.Rd | 3 tidyfst-0.9.7/tidyfst/man/slice.Rd |only 15 files changed, 121 insertions(+), 106 deletions(-)
Title: Clustering Algorithm for Data Integration and Disease Subtyping
Description: Provides a robust approach for omics data integration and disease subtyping. PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands of samples and features. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust against noise and data perturbation (Nguyen et.al. (2019) <DOI: 10.1093/bioinformatics/bty1049>, Nguyen et.al. (2017)<DOI: 10.1101/gr.215129.116>).
Author: Hung Nguyen, Bang Tran, Duc Tran and Tin Nguyen
Maintainer: Hung Nguyen <hungnp@nevada.unr.edu>
Diff between PINSPlus versions 2.0.2 dated 2020-04-13 and 2.0.3 dated 2020-05-28
DESCRIPTION | 14 ++------ MD5 | 16 ++++----- R/perturb-functions.R | 8 ---- R/perturbation-clustering.R | 9 +++-- R/subtyping-omics-data-helpers.R | 67 --------------------------------------- R/subtyping-omics-data.R | 13 ++++--- man/PerturbationClustering.Rd | 7 +++- man/SubtypingOmicsData.Rd | 3 + vignettes/PINSPlus.html | 18 +++++----- 9 files changed, 45 insertions(+), 110 deletions(-)
Title: Interface to 'Macaulay2'
Description: Persistent interface to 'Macaulay2' <http://www.math.uiuc.edu/Macaulay2/>
and front-end tools facilitating its use in the 'R' ecosystem. For details see
Kahle et. al. (2020) <doi:10.18637/jss.v093.i09>.
Author: David Kahle [aut, cph, cre] (<https://orcid.org/0000-0002-9999-1558>),
Christopher O'Neill [aut, cph],
Jeff Sommars [aut, cph]
Maintainer: David Kahle <david@kahle.io>
Diff between m2r versions 1.0.1 dated 2020-05-06 and 1.0.2 dated 2020-05-28
DESCRIPTION | 9 +++++---- MD5 | 12 ++++++------ R/m2_parser.R | 7 +++++-- R/m2r-package.R | 3 +++ inst/CITATION | 33 +++++++++++++++++++++------------ man/m2_parser.Rd | 9 +++++++-- man/m2r.Rd | 5 +++++ 7 files changed, 52 insertions(+), 26 deletions(-)
Title: Estimation of Recombination Rate and Maternal LD in Half-Sibs
Description: Paternal recombination rate and maternal linkage disequilibrium
(LD) are estimated for pairs of biallelic markers such as single nucleotide
polymorphisms (SNPs) from progeny genotypes and sire haplotypes. At least
one sire has to be double heterozygous at the investigated pairs of SNPs.
The implementation relies on paternal half-sib families. If maternal half-
sib families are used, the roles of sire/dam are swapped. Multiple families
can be considered.
Hampel, Teuscher, Gomez-Raya, Doschoris, Wittenburg (2018) "Estimation of
recombination rate and maternal linkage disequilibrium in half-sibs"
<doi:10.3389/fgene.2018.00186>.
Gomez-Raya (2012) "Maximum likelihood estimation of linkage disequilibrium
in half-sib families" <doi:10.1534/genetics.111.137521>.
Author: Dörte Wittenburg [aut, cre]
Maintainer: Dörte Wittenburg <wittenburg@fbn-dummerstorf.de>
Diff between hsrecombi versions 0.1.3 dated 2020-03-04 and 0.3.0 dated 2020-05-28
DESCRIPTION | 8 +- MD5 | 23 ++++--- NAMESPACE | 5 + NEWS.md | 11 +++ R/functions.R | 150 +++++++++++++++++++++++++++++++++++++++++++++---- R/hsrecombi.R | 72 ++++++++++++++++++++++- man/checkCandidates.Rd |only man/editraw.Rd | 4 - man/geneticPosition.Rd |only man/hsrecombi.Rd | 6 + man/makehap.Rd | 10 +-- man/makehaplist.Rd | 5 - man/makehappm.Rd |only man/startvalue.Rd | 2 14 files changed, 257 insertions(+), 39 deletions(-)
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment conditions. It includes the two step Generalized method of moments (Hansen 1982; <doi:10.2307/1912775>), the iterated GMM and continuous updated estimator (Hansen, Eaton and Yaron 1996; <doi:10.2307/1392442>) and several methods that belong to the Generalized Empirical Likelihood family of estimators (Smith 1997; <doi:10.1111/j.0013-0133.1997.174.x>, Kitamura 1997; <doi:10.1214/aos/1069362388>, Newey and Smith 2004; <doi:10.1111/j.1468-0262.2004.00482.x>, and Anatolyev 2005 <doi:10.1111/j.1468-0262.2005.00601.x>).
Author: Pierre Chausse <pchausse@uwaterloo.ca>
Maintainer: Pierre Chausse <pchausse@uwaterloo.ca>
Diff between gmm versions 1.6-4 dated 2019-12-04 and 1.6-5 dated 2020-05-28
DESCRIPTION | 21 +++++++-------------- MD5 | 16 ++++++++-------- build/vignette.rds |binary data/Finance.rda |binary data/Growth.rda |binary data/nsw.rda |binary data/wage.rda |binary inst/doc/gmm_with_R.pdf |binary src/gmm.h | 4 ++-- 9 files changed, 17 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-19 0.2.0.1
2016-10-07 0.2.0
2016-08-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-03 0.4.0
Title: Subject Weighted Support Vector Machines
Description: Functions for subject/instance weighted support vector machines (SVM).
It uses a modified version of 'libsvm' and is compatible with package 'e1071'.
Author: Tianchen Xu [aut, cre] (<https://orcid.org/0000-0002-0102-7630>),
Chih-Chung Chang [ctb, cph] (libsvm C++-code),
Chih-Chen Lin [ctb, cph] (libsvm C++-code),
Ming-Wei Chang [ctb, cph] (libsvm C++-code),
Hsuan-Tien Lin [ctb, cph] (libsvm C++-code),
Ming-Hen Tsai [ctb, cph] (libsvm C++-code),
Chia-Hua Ho [ctb, cph] (libsvm C++-code),
Hsiang-Fu Yu [ctb, cph] (libsvm C++-code),
David Meyer [ctb],
Evgenia Dimitriadou [ctb],
Kurt Hornik [ctb],
Andreas Weingessel [ctb],
Friedrich Leisch [ctb]
Maintainer: Tianchen Xu <tx2155@columbia.edu>
Diff between WeightSVM versions 1.7-4 dated 2020-04-18 and 1.7-5 dated 2020-05-28
DESCRIPTION | 9 +++++---- MD5 | 8 +++++++- build |only inst |only tests/tune.wsvm.Rd |only vignettes |only 6 files changed, 12 insertions(+), 5 deletions(-)
Title: Chemical Information from the Web
Description: Chemical information from around the web. This package interacts
with a suite of web services for chemical information. Sources include: Alan
Wood's Compendium of Pesticide Common Names, Chemical Identifier Resolver,
ChEBI, Chemical Translation Service, ChemIDplus, ChemSpider, ETOX,
Flavornet, NIST Chemistry WebBook, OPSIN, PAN Pesticide Database, PubChem,
SRS, Wikidata.
Author: Eduard Szöcs [aut],
Robert Allaway [ctb],
Daniel Muench [ctb],
Johannes Ranke [ctb],
Andreas Scharmüller [ctb],
Eric R Scott [ctb],
Jan Stanstrup [ctb],
Gordon Getzinger [ctb],
Tamás Stirling [ctb, cre]
Maintainer: Tamás Stirling <stirling.tamas@gmail.com>
Diff between webchem versions 0.5.0 dated 2020-03-02 and 1.0.0 dated 2020-05-28
webchem-0.5.0/webchem/NEWS |only webchem-0.5.0/webchem/data/aw_idx.rda |only webchem-0.5.0/webchem/man/aw_idx.Rd |only webchem-0.5.0/webchem/man/ping.Rd |only webchem-0.5.0/webchem/tests/testthat/test_fn.R |only webchem-1.0.0/webchem/DESCRIPTION | 23 webchem-1.0.0/webchem/MD5 | 162 ++-- webchem-1.0.0/webchem/NAMESPACE | 31 webchem-1.0.0/webchem/NEWS.md |only webchem-1.0.0/webchem/R/alanwood.R | 221 +++-- webchem-1.0.0/webchem/R/chebi.R | 68 + webchem-1.0.0/webchem/R/chemid.R | 18 webchem-1.0.0/webchem/R/chemspider.R | 151 ++- webchem-1.0.0/webchem/R/cir.R | 6 webchem-1.0.0/webchem/R/cts.R | 20 webchem-1.0.0/webchem/R/etox.R | 276 ++++-- webchem-1.0.0/webchem/R/extractors.R | 88 +- webchem-1.0.0/webchem/R/flavornet.R | 5 webchem-1.0.0/webchem/R/nist.R | 333 +++++--- webchem-1.0.0/webchem/R/opsin.R | 36 webchem-1.0.0/webchem/R/pan.R | 8 webchem-1.0.0/webchem/R/ping.R | 202 ++++- webchem-1.0.0/webchem/R/pubchem.R | 676 +++++++++++++---- webchem-1.0.0/webchem/R/utils.R | 162 +++- webchem-1.0.0/webchem/R/webchem-package.R | 20 webchem-1.0.0/webchem/R/wikidata.R | 169 +--- webchem-1.0.0/webchem/build |only webchem-1.0.0/webchem/inst/CITATION | 33 webchem-1.0.0/webchem/inst/doc |only webchem-1.0.0/webchem/man/as.cas.Rd | 3 webchem-1.0.0/webchem/man/aw_query.Rd | 33 webchem-1.0.0/webchem/man/build_aw_idx.Rd | 21 webchem-1.0.0/webchem/man/chebi_comp_entity.Rd | 7 webchem-1.0.0/webchem/man/ci_query.Rd | 2 webchem-1.0.0/webchem/man/cir_query.Rd | 2 webchem-1.0.0/webchem/man/cs_check_key.Rd | 2 webchem-1.0.0/webchem/man/cs_compinfo.Rd | 2 webchem-1.0.0/webchem/man/cs_control.Rd | 4 webchem-1.0.0/webchem/man/cs_convert.Rd | 9 webchem-1.0.0/webchem/man/cs_datasources.Rd | 2 webchem-1.0.0/webchem/man/cs_extcompinfo.Rd | 2 webchem-1.0.0/webchem/man/cts_compinfo.Rd | 2 webchem-1.0.0/webchem/man/cts_convert.Rd | 10 webchem-1.0.0/webchem/man/cts_from.Rd | 2 webchem-1.0.0/webchem/man/etox_basic.Rd | 26 webchem-1.0.0/webchem/man/etox_targets.Rd | 24 webchem-1.0.0/webchem/man/etox_tests.Rd | 4 webchem-1.0.0/webchem/man/extractors.Rd | 6 webchem-1.0.0/webchem/man/fn_percept.Rd | 2 webchem-1.0.0/webchem/man/get_chebiid.Rd | 13 webchem-1.0.0/webchem/man/get_cid.Rd | 139 ++- webchem-1.0.0/webchem/man/get_csid.Rd | 45 - webchem-1.0.0/webchem/man/get_etoxid.Rd | 26 webchem-1.0.0/webchem/man/get_wdid.Rd | 21 webchem-1.0.0/webchem/man/is.cas.Rd | 19 webchem-1.0.0/webchem/man/is.inchikey.Rd | 13 webchem-1.0.0/webchem/man/is.inchikey_cs.Rd | 2 webchem-1.0.0/webchem/man/is.inchikey_format.Rd | 5 webchem-1.0.0/webchem/man/is.smiles.Rd | 10 webchem-1.0.0/webchem/man/jagst.Rd | 6 webchem-1.0.0/webchem/man/lc50.Rd | 6 webchem-1.0.0/webchem/man/nist_ri.Rd | 38 webchem-1.0.0/webchem/man/opsin_query.Rd | 2 webchem-1.0.0/webchem/man/parse_mol.Rd | 26 webchem-1.0.0/webchem/man/pc_prop.Rd | 45 - webchem-1.0.0/webchem/man/pc_sect.Rd |only webchem-1.0.0/webchem/man/pc_synonyms.Rd | 41 - webchem-1.0.0/webchem/man/ping_service.Rd |only webchem-1.0.0/webchem/man/wd_ident.Rd | 2 webchem-1.0.0/webchem/man/webchem.Rd | 3 webchem-1.0.0/webchem/tests/testthat.R | 6 webchem-1.0.0/webchem/tests/testthat/test-alanwood.R | 65 - webchem-1.0.0/webchem/tests/testthat/test-chebi.R | 53 + webchem-1.0.0/webchem/tests/testthat/test-chemid.R | 49 - webchem-1.0.0/webchem/tests/testthat/test-chemspider.R | 169 +++- webchem-1.0.0/webchem/tests/testthat/test-cir.R | 24 webchem-1.0.0/webchem/tests/testthat/test-cts.R | 57 - webchem-1.0.0/webchem/tests/testthat/test-etox.R | 258 +++--- webchem-1.0.0/webchem/tests/testthat/test-extractors.R | 116 +- webchem-1.0.0/webchem/tests/testthat/test-flavornet.R |only webchem-1.0.0/webchem/tests/testthat/test-nist.R | 169 +++- webchem-1.0.0/webchem/tests/testthat/test-opsin.R | 21 webchem-1.0.0/webchem/tests/testthat/test-pan.R | 31 webchem-1.0.0/webchem/tests/testthat/test-pubchem.R | 174 +++- webchem-1.0.0/webchem/tests/testthat/test-utils.R | 47 - webchem-1.0.0/webchem/tests/testthat/test-wikidata.R | 43 - webchem-1.0.0/webchem/vignettes |only 87 files changed, 3125 insertions(+), 1492 deletions(-)
Title: Interactive Data Tables Based on 'React Table'
Description: Interactive data tables for R, based on the 'React Table'
JavaScript library. Provides an HTML widget that can be used in 'R Markdown'
documents and 'Shiny' applications, or viewed from an R console.
Author: Greg Lin [aut, cre],
Tanner Linsley [ctb, cph] (React Table library),
Emotion team and other contributors [ctb, cph] (Emotion library)
Maintainer: Greg Lin <glin@glin.io>
Diff between reactable versions 0.1.0.1 dated 2020-02-29 and 0.2.0 dated 2020-05-28
DESCRIPTION | 18 MD5 | 52 +- NAMESPACE | 26 - NEWS.md |only R/columns.R | 16 R/language.R |only R/reactable.R | 164 ++++++-- R/shiny.R |only R/theme.R |only R/utils.R | 5 README.md | 687 ++---------------------------------- inst/examples/app/app.R | 84 +++- inst/examples/app/assets/styles.css | 21 - inst/htmlwidgets/reactable.js | 4 inst/htmlwidgets/reactable.js.map | 2 inst/htmlwidgets/reactable.yaml | 1 man/colDef.Rd | 259 +++++++------ man/colFormat.Rd | 143 +++---- man/colGroup.Rd | 109 +++-- man/figures |only man/getReactableState.Rd |only man/reactable-package.Rd | 71 +-- man/reactable-shiny.Rd | 134 +++---- man/reactable.Rd | 427 ++++++++++++---------- man/reactableLang.Rd |only man/reactableTheme.Rd |only man/updateReactable.Rd |only tests/testthat/test-columns.R | 8 tests/testthat/test-language.R |only tests/testthat/test-reactable.R | 236 +++++++++++- tests/testthat/test-shiny.R |only tests/testthat/test-theme.R |only tests/testthat/test-utils.R | 12 33 files changed, 1190 insertions(+), 1289 deletions(-)
Title: Plotting for Bayesian Models
Description: Plotting functions for posterior analysis, MCMC diagnostics,
prior and posterior predictive checks, and other visualizations
to support the applied Bayesian workflow advocated in
Gabry, Simpson, Vehtari, Betancourt, and Gelman (2019) <doi:10.1111/rssa.12378>.
The package is designed not only to provide convenient functionality
for users, but also a common set of functions that can be easily used by
developers working on a variety of R packages for Bayesian modeling,
particularly (but not exclusively) packages interfacing with 'Stan'.
Author: Jonah Gabry [aut, cre],
Tristan Mahr [aut],
Paul-Christian Bürkner [ctb],
Martin Modrák [ctb],
Malcolm Barrett [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between bayesplot versions 1.7.1 dated 2019-12-01 and 1.7.2 dated 2020-05-28
bayesplot-1.7.1/bayesplot/tests/figs |only bayesplot-1.7.1/bayesplot/tests/testthat/Rplots.pdf |only bayesplot-1.7.2/bayesplot/DESCRIPTION | 12 bayesplot-1.7.2/bayesplot/MD5 | 146 +--------- bayesplot-1.7.2/bayesplot/NEWS.md | 6 bayesplot-1.7.2/bayesplot/R/available-module-functions.R | 7 bayesplot-1.7.2/bayesplot/R/helpers-gg.R | 7 bayesplot-1.7.2/bayesplot/R/mcmc-distributions.R | 40 +- bayesplot-1.7.2/bayesplot/R/mcmc-intervals.R | 13 bayesplot-1.7.2/bayesplot/R/mcmc-scatterplots.R | 6 bayesplot-1.7.2/bayesplot/R/ppc-intervals.R | 10 bayesplot-1.7.2/bayesplot/R/ppc-loo.R | 4 bayesplot-1.7.2/bayesplot/inst/doc/graphical-ppcs.R | 52 +-- bayesplot-1.7.2/bayesplot/inst/doc/graphical-ppcs.html | 43 +- bayesplot-1.7.2/bayesplot/inst/doc/plotting-mcmc-draws.R | 68 ++-- bayesplot-1.7.2/bayesplot/inst/doc/plotting-mcmc-draws.Rmd | 33 ++ bayesplot-1.7.2/bayesplot/inst/doc/plotting-mcmc-draws.html | 90 +++--- bayesplot-1.7.2/bayesplot/inst/doc/visual-mcmc-diagnostics.R | 86 +++-- bayesplot-1.7.2/bayesplot/inst/doc/visual-mcmc-diagnostics.Rmd | 35 +- bayesplot-1.7.2/bayesplot/inst/doc/visual-mcmc-diagnostics.html | 56 ++- bayesplot-1.7.2/bayesplot/man/MCMC-intervals.Rd | 2 bayesplot-1.7.2/bayesplot/man/MCMC-scatterplots.Rd | 6 bayesplot-1.7.2/bayesplot/man/MCMC-traces.Rd | 2 bayesplot-1.7.2/bayesplot/man/available_ppc.Rd | 4 bayesplot-1.7.2/bayesplot/tests/testthat/test-helpers-shared.R | 20 - bayesplot-1.7.2/bayesplot/tests/testthat/test-mcmc-diagnostics.R | 8 bayesplot-1.7.2/bayesplot/tests/testthat/test-mcmc-distributions.R | 11 bayesplot-1.7.2/bayesplot/tests/testthat/test-mcmc-intervals.R | 4 bayesplot-1.7.2/bayesplot/vignettes/plotting-mcmc-draws.Rmd | 33 ++ bayesplot-1.7.2/bayesplot/vignettes/visual-mcmc-diagnostics.Rmd | 35 +- 30 files changed, 440 insertions(+), 399 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-13 1.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-02 1.0.9
2017-05-03 1.0.5
2016-12-13 1.0.4
2016-12-06 1.0.3
2016-12-05 1.0.2
2016-06-18 1.0.1
2016-06-13 1.0.0
2016-02-01 0.7.0
2015-11-24 0.6.0
2014-11-29 0.5.0
2014-10-24 0.4.0
2014-04-30 0.3.0
2014-01-03 0.2.0
2013-09-05 0.1.0
Title: Stochastic Simulation of Streamflow Time Series using Phase
Randomization
Description: Provides a simulation framework to simulate streamflow time series with similar
main characteristics as observed data. These characteristics include the distribution of daily
streamflow values and their temporal correlation as expressed by short- and long-range
dependence. The approach is based on the randomization of the phases of the Fourier
transform or the phases of the wavelet transform. The function prsim() is applicable
to single site simulation and uses the Fourier transform.
The function prsim.wave() extends the approach to multiple sites
and is based on the complex wavelet transform.
We further use the flexible four-parameter Kappa distribution,
which allows for the extrapolation to yet unobserved low and high flows.
Alternatively, the empirical or any other distribution can be used.
A detailed description of the simulation approach for single sites
and an application example can be found in <https://www.hydrol-earth-syst-sci.net/23/3175/2019/>.
A detailed description and evaluation of the wavelet-based multi-site approach
can be found in <https://www.hydrol-earth-syst-sci-discuss.net/hess-2019-658/>.
Author: Manuela Brunner [aut, cre] (<https://orcid.org/0000-0001-8824-877X>),
Reinhard Furrer [aut] (<https://orcid.org/0000-0002-6319-2332>)
Maintainer: Manuela Brunner <manuela.i.brunner@gmail.com>
Diff between PRSim versions 1.2-1 dated 2020-01-10 and 1.2-2 dated 2020-05-28
DESCRIPTION | 29 +++-- MD5 | 24 ++-- NAMESPACE | 8 + R/fun_stoch_sim_wave.R | 229 +++++++++++++++++++++++++++++++++++++++-- build/partial.rdb |binary demo/PRSim_wave-validate.R | 2 demo/PRSim_wave.R | 2 man/PRSim-package.Rd | 2 man/fun_stoch_sim_wave.Rd | 3 man/runoff.Rd | 2 man/runoff_multi_sites.Rd | 2 man/simulations.Rd | 2 man/simulations_multi_sites.Rd | 2 13 files changed, 268 insertions(+), 39 deletions(-)
Title: Model of Adaptive Trait Evolution
Description: Performs statistical inference on the models of adaptive trait evolution under approximate Bayesian computation. This can simulate traits from four models, compute trait data summary statistics. Parameters are estimated under Approximate Bayesian Computation, model selection as well as posterior parameter mean will be reported. Users need to enter a comparative dataset and a phylogenetic tree.
Author: Dwueng-Chwuan Jhwueng
Maintainer: Dwueng-Chwuan Jhwueng <dcjhwueng@fcu.edu.tw>
Diff between ouxy versions 1.1 dated 2019-09-20 and 2.1 dated 2020-05-28
DESCRIPTION | 12 MD5 | 32 NAMESPACE | 18 R/ouxy.r | 1972 ++++++++++++++++++++++++++++++++++++++++++++-------- man/oubmTrait.Rd |only man/oubmbmprior.Rd | 6 man/oubmcirprior.Rd | 6 man/oubmmodel.Rd |only man/oubmprior.Rd |only man/ougbmTrait.Rd |only man/ougbmmodel.Rd |only man/ougbmprior.Rd |only man/ougouTrait.Rd |only man/ougoumodel.Rd |only man/ougouprior.Rd |only man/ououTrait.Rd |only man/ououbmprior.Rd | 6 man/ououcirprior.Rd | 6 man/ououmodel.Rd |only man/ououprior.Rd |only man/ouqbmTrait.Rd |only man/ouqbmmodel.Rd |only man/ouqbmprior.Rd |only man/ouqouTrait.Rd |only man/ouqoumodel.Rd |only man/ouqouprior.Rd |only 26 files changed, 1758 insertions(+), 300 deletions(-)
Title: Asymptotically Bias-Corrected Regularized Linear Discriminant
Analysis
Description: Offers methods to perform asymptotically bias-corrected regularized linear discriminant analysis (ABC_RLDA) for cost-sensitive binary classification. The bias-correction is an estimate of the bias term added to regularized discriminant analysis (RLDA) that minimizes the overall risk. The default magnitude of misclassification costs are equal and set to 0.5; however, the package also offers the options to set them to some predetermined values or, alternatively, take them as hyperparameters to tune.
A. Zollanvari, M. Abdirash, A. Dadlani and B. Abibullaev (2019) <doi:10.1109/LSP.2019.2918485>.
Author: Dmitriy Fedorov [aut, cre],
Amin Zollanvari [aut],
Aresh Dadlani [aut],
Berdakh Abibullaev [aut]
Maintainer: Dmitriy Fedorov <dmitriy.fedorov@nu.edu.kz>
Diff between abcrlda versions 1.0.2 dated 2020-01-29 and 1.0.3 dated 2020-05-28
abcrlda-1.0.2/abcrlda/inst/abcrlda_1.0.2.pdf |only abcrlda-1.0.3/abcrlda/DESCRIPTION | 8 +++---- abcrlda-1.0.3/abcrlda/MD5 | 18 ++++++++--------- abcrlda-1.0.3/abcrlda/NAMESPACE | 2 - abcrlda-1.0.3/abcrlda/R/abc_grid.R | 26 +++++++++++++------------ abcrlda-1.0.3/abcrlda/R/abcrlda.R | 8 +++---- abcrlda-1.0.3/abcrlda/inst/abcrlda_1.0.3.pdf |only abcrlda-1.0.3/abcrlda/man/abcrlda.Rd | 4 +-- abcrlda-1.0.3/abcrlda/man/da_risk_estimator.Rd | 10 +-------- abcrlda-1.0.3/abcrlda/man/grid_search.Rd | 2 - abcrlda-1.0.3/abcrlda/man/predict.abcrlda.Rd | 4 +-- 11 files changed, 39 insertions(+), 43 deletions(-)