Title: Download Data on UK Police and Crime
Description: Downloads data from the 'UK Police' public data API,
the full docs of which are available at <https://data.police.uk/docs/>.
Includes data on police forces and police force areas, crime reports,
and the use of stop-and-search powers.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>),
Tierney Nicholas [aut] (<https://orcid.org/0000-0003-1460-8722>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between ukpolice versions 0.2.0 dated 2020-05-24 and 0.2.1 dated 2020-05-30
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 12 ++++++------ NEWS.md | 10 +++++++++- inst/doc/introduction.html | 4 ++-- tests/testthat/test-empty-functions.R | 2 +- tests/testthat/test-stop-and-search.R | 13 ++++++++++--- 7 files changed, 32 insertions(+), 17 deletions(-)
Title: Classification with Mixture Modelling
Description: Interface of 'MIXMOD' software for supervised, unsupervised and
semi-supervised classification with mixture modelling.
Author: Florent Langrognet [aut],
Remi Lebret [aut],
Christian Poli [aut],
Serge Iovleff [aut],
Benjamin Auder [aut],
Parmeet Bhatia [ctb],
Anwuli Echenim [ctb],
Serge Iovleff [aut],
Christophe Biernacki [ctb],
Gilles Celeux [ctb],
Gerard Govaert [ctb],
Quentin Grimonprez [cre]
Maintainer: Quentin Grimonprez <quentin.grimonprez@inria.fr>
Diff between Rmixmod versions 2.1.2.2 dated 2019-03-11 and 2.1.4 dated 2020-05-30
Rmixmod-2.1.2.2/Rmixmod/src/Makevars |only Rmixmod-2.1.2.2/Rmixmod/src/XmlMakevars |only Rmixmod-2.1.2.2/Rmixmod/src/XmlMakevars.in |only Rmixmod-2.1.4/Rmixmod/DESCRIPTION | 49 Rmixmod-2.1.4/Rmixmod/MD5 | 207 +-- Rmixmod-2.1.4/Rmixmod/NAMESPACE | 1 Rmixmod-2.1.4/Rmixmod/R/A_NAMESPACE.R | 2 Rmixmod-2.1.4/Rmixmod/R/CompositeModel.R | 266 +--- Rmixmod-2.1.4/Rmixmod/R/CompositeParameter.R | 100 - Rmixmod-2.1.4/Rmixmod/R/GaussianModel.R | 219 +-- Rmixmod-2.1.4/Rmixmod/R/GaussianParameter.R | 95 - Rmixmod-2.1.4/Rmixmod/R/Mixmod.R | 351 ++--- Rmixmod-2.1.4/Rmixmod/R/MixmodCluster.R | 257 +-- Rmixmod-2.1.4/Rmixmod/R/MixmodDAResults.R | 72 - Rmixmod-2.1.4/Rmixmod/R/MixmodLearn.R | 220 +-- Rmixmod-2.1.4/Rmixmod/R/MixmodPredict.R | 207 +-- Rmixmod-2.1.4/Rmixmod/R/MixmodResults.R | 286 ++-- Rmixmod-2.1.4/Rmixmod/R/MixmodXml.R | 30 Rmixmod-2.1.4/Rmixmod/R/Model.R | 65 - Rmixmod-2.1.4/Rmixmod/R/MultinomialModel.R | 179 +- Rmixmod-2.1.4/Rmixmod/R/MultinomialParameter.R | 104 - Rmixmod-2.1.4/Rmixmod/R/Parameter.R | 34 Rmixmod-2.1.4/Rmixmod/R/Rmixmod.R | 644 ++++------ Rmixmod-2.1.4/Rmixmod/R/Strategy.R | 307 ++-- Rmixmod-2.1.4/Rmixmod/R/global.R | 423 +++--- Rmixmod-2.1.4/Rmixmod/cleanup |only Rmixmod-2.1.4/Rmixmod/configure | 38 Rmixmod-2.1.4/Rmixmod/configure.ac | 22 Rmixmod-2.1.4/Rmixmod/data/birds.rda |binary Rmixmod-2.1.4/Rmixmod/data/car.rda |binary Rmixmod-2.1.4/Rmixmod/data/finance.rda |binary Rmixmod-2.1.4/Rmixmod/data/geyser.rda |binary Rmixmod-2.1.4/Rmixmod/data/heterodata.rda |binary Rmixmod-2.1.4/Rmixmod/data/heterodatatest.rda |binary Rmixmod-2.1.4/Rmixmod/data/heterodatatrain.rda |binary Rmixmod-2.1.4/Rmixmod/data/titanic.rda |binary Rmixmod-2.1.4/Rmixmod/man/CompositeModel-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/CompositeParameter-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/GaussianModel-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/GaussianParameter-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/Mixmod-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/MixmodCluster-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/MixmodDAResults-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/MixmodLearn-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/MixmodPredict-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/MixmodResults-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/MixmodXmlCheck-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/MixmodXmlInput-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/Model-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/MultinomialModel-class.Rd | 7 Rmixmod-2.1.4/Rmixmod/man/MultinomialParameter-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/Parameter-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/Rmixmod-package.Rd | 13 Rmixmod-2.1.4/Rmixmod/man/Strategy-class.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/asQualitative.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/barplot-methods.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/barplotCluster.Rd | 10 Rmixmod-2.1.4/Rmixmod/man/birds.Rd | 7 Rmixmod-2.1.4/Rmixmod/man/car.Rd | 7 Rmixmod-2.1.4/Rmixmod/man/clusteringMain.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/composeModelName.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/ellipse.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/extract-methods.Rd | 94 - Rmixmod-2.1.4/Rmixmod/man/finance.Rd | 7 Rmixmod-2.1.4/Rmixmod/man/geyser.Rd | 9 Rmixmod-2.1.4/Rmixmod/man/heterodata.Rd | 7 Rmixmod-2.1.4/Rmixmod/man/heterodatatest.Rd | 7 Rmixmod-2.1.4/Rmixmod/man/heterodatatrain.Rd | 7 Rmixmod-2.1.4/Rmixmod/man/hist-methods.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/histCluster.Rd | 13 Rmixmod-2.1.4/Rmixmod/man/initialize-methods.Rd | 131 +- Rmixmod-2.1.4/Rmixmod/man/is.dataType.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/is.wholenumber.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/isQualitative.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/learnMain.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/matrix2binary.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/mixmodCluster.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/mixmodCompositeModel.Rd | 17 Rmixmod-2.1.4/Rmixmod/man/mixmodGaussianModel.Rd | 15 Rmixmod-2.1.4/Rmixmod/man/mixmodLearn.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/mixmodLearn.default.Rd | 12 Rmixmod-2.1.4/Rmixmod/man/mixmodMultinomialModel.Rd | 17 Rmixmod-2.1.4/Rmixmod/man/mixmodPredict.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/mixmodStrategy.Rd | 21 Rmixmod-2.1.4/Rmixmod/man/mixmodXmlCheck.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/mixmodXmlInput.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/mixmodXmlLoad.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/nbFactorFromData.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/oldmixmodPredict.Rd | 6 Rmixmod-2.1.4/Rmixmod/man/plot-methods.Rd | 4 Rmixmod-2.1.4/Rmixmod/man/plotCluster.Rd | 16 Rmixmod-2.1.4/Rmixmod/man/predictMain.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/print-methods.Rd | 16 Rmixmod-2.1.4/Rmixmod/man/show-methods.Rd | 16 Rmixmod-2.1.4/Rmixmod/man/sortByCriterion-methods.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/summary-methods.Rd | 11 Rmixmod-2.1.4/Rmixmod/man/titanic.Rd | 7 Rmixmod-2.1.4/Rmixmod/man/vector2binary.Rd | 1 Rmixmod-2.1.4/Rmixmod/man/xMain.Rd | 1 Rmixmod-2.1.4/Rmixmod/src/ClusteringInputHandling.cpp | 12 Rmixmod-2.1.4/Rmixmod/src/InputHandling.cpp | 4 Rmixmod-2.1.4/Rmixmod/src/Makevars.in |only Rmixmod-2.1.4/Rmixmod/src/Makevars.win | 6 Rmixmod-2.1.4/Rmixmod/src/mixmod/Kernel/Parameter/GaussianEDDAParameter.cpp | 2 Rmixmod-2.1.4/Rmixmod/src/mixmod/mixmod_r.mk | 8 Rmixmod-2.1.4/Rmixmod/src/mixmod_iostream/mixmod_iostream_r.mk | 1 Rmixmod-2.1.4/Rmixmod/tests/heterogeneousDAtest.R | 39 107 files changed, 2256 insertions(+), 2509 deletions(-)
Title: Clustering Algorithm for Data Integration and Disease Subtyping
Description: Provides a robust approach for omics data integration and disease subtyping. PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands of samples and features. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust against noise and data perturbation (Nguyen et.al. (2019) <DOI: 10.1093/bioinformatics/bty1049>, Nguyen et.al. (2017)<DOI: 10.1101/gr.215129.116>).
Author: Hung Nguyen, Bang Tran, Duc Tran and Tin Nguyen
Maintainer: Hung Nguyen <hungnp@nevada.unr.edu>
Diff between PINSPlus versions 2.0.3 dated 2020-05-28 and 2.0.4 dated 2020-05-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/perturbation-clustering.R | 26 +++++++++++++------------- R/stopping-criteria-handlers.R | 4 ++-- vignettes/PINSPlus.html | 14 +++++++------- 5 files changed, 30 insertions(+), 30 deletions(-)
Title: Clustering with Matrix Gaussian and Matrix Transformation
Mixture Models
Description: Provides matrix Gaussian mixture models, matrix transformation mixture models and their model-based clustering results. The parsimonious models of the mean matrices and variance covariance matrices are implemented with a total of 196 variations.
Author: Xuwen Zhu [aut, cre],
Volodymyr Melnykov [aut],
Shuchismita Sarkar [ctb],
Michael Hutt [ctb, cph],
Stephen Moshier [ctb, cph],
Rouben Rostamian [ctb, cph],
Carl Edward Rasmussen [ctb, cph],
Dianne Cook [ctb, cph]
Maintainer: Xuwen Zhu <xzhu20@cba.ua.edu>
Diff between MatTransMix versions 0.1.8 dated 2020-04-08 and 0.1.9 dated 2020-05-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 4 ++++ data/Salary.RData |binary 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Data Used to Illustrate 'Loon' Functionality
Description: Data used as examples in the 'loon' package.
Author: R. Wayne Oldford [aut, cre],
Adrian Waddell [aut]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon.data versions 0.0.9 dated 2020-05-19 and 0.1.0 dated 2020-05-30
DESCRIPTION | 6 +++--- MD5 | 20 +++++++++++++------- NEWS.md | 8 +++++++- R/covidNZ.R |only R/medicalRecords.R | 2 +- R/pandemic.R | 2 +- R/placenamesCanada.R |only data/covidNZ.rda |only data/datalist | 2 ++ data/placenamesCanada.rda |only man/covidNZ.Rd |only man/medicalRecords.Rd | 2 +- man/pandemic.Rd | 2 +- man/placenamesCanada.Rd |only 14 files changed, 29 insertions(+), 15 deletions(-)
Title: Generalised Management Strategy Evaluation Simulator
Description: Integrates game theory and ecological theory to construct
social-ecological models that simulate the management of populations and
stakeholder actions. These models build off of a previously developed
management strategy evaluation (MSE) framework to simulate all aspects of
management: population dynamics, manager observation of populations, manager
decision making, and stakeholder responses to management decisions. The
newly developed generalised management strategy evaluation (GMSE)
framework uses genetic algorithms to mimic the decision-making process of
managers and stakeholders under conditions of change, uncertainty, and
conflict. Simulations can be run using gmse(), gmse_apply(), and
gmse_gui() functions.
Author: A. Bradley Duthie [aut, cre] (<https://orcid.org/0000-0001-8343-4995>),
Adrian Bach [ctb],
Nils Bunnefeld [ctb, fnd] (<https://orcid.org/0000-0002-1349-4463>),
Jeremy Cusack [ctb] (<https://orcid.org/0000-0003-3004-1586>),
Isabel Jones [ctb] (<https://orcid.org/0000-0002-8361-1370>),
Jeroen Minderman [ctb] (<https://orcid.org/0000-0002-8451-5540>),
Erlend Nilsen [ctb] (<https://orcid.org/0000-0002-5119-8331>),
Rocio Pozo [ctb] (<https://orcid.org/0000-0002-7546-8076>),
Sarobidy Rakotonarivo [ctb] (<https://orcid.org/0000-0002-8032-1431>),
Bram Van Moorter [ctb] (<https://orcid.org/0000-0002-3196-1993>)
Maintainer: A. Bradley Duthie <brad.duthie@gmail.com>
Diff between GMSE versions 0.4.0.13 dated 2020-02-04 and 0.6.0.4 dated 2020-05-30
GMSE-0.4.0.13/GMSE/R/scratch.R |only GMSE-0.6.0.4/GMSE/DESCRIPTION | 10 GMSE-0.6.0.4/GMSE/MD5 | 118 - GMSE-0.6.0.4/GMSE/NAMESPACE | 3 GMSE-0.6.0.4/GMSE/NEWS.md |only GMSE-0.6.0.4/GMSE/R/gmse.R | 206 +- GMSE-0.6.0.4/GMSE/R/gmse_apply.R | 1401 +++++++++------ GMSE-0.6.0.4/GMSE/R/gmse_gui.R | 99 - GMSE-0.6.0.4/GMSE/R/gmse_summary.R | 7 GMSE-0.6.0.4/GMSE/R/initialise.R | 229 ++ GMSE-0.6.0.4/GMSE/R/landscape.R | 83 GMSE-0.6.0.4/GMSE/R/manager.R | 4 GMSE-0.6.0.4/GMSE/R/observation.R | 4 GMSE-0.6.0.4/GMSE/R/plotting.R | 69 GMSE-0.6.0.4/GMSE/R/resource.R | 2 GMSE-0.6.0.4/GMSE/R/user.R | 4 GMSE-0.6.0.4/GMSE/README.md | 4 GMSE-0.6.0.4/GMSE/build/vignette.rds |binary GMSE-0.6.0.4/GMSE/inst/doc/SI1.pdf |binary GMSE-0.6.0.4/GMSE/inst/doc/SI2.pdf |binary GMSE-0.6.0.4/GMSE/inst/doc/SI3.pdf |binary GMSE-0.6.0.4/GMSE/inst/doc/SI4.pdf |binary GMSE-0.6.0.4/GMSE/inst/doc/SI5.pdf |binary GMSE-0.6.0.4/GMSE/inst/doc/SI6.pdf |binary GMSE-0.6.0.4/GMSE/inst/doc/SI7.pdf |binary GMSE-0.6.0.4/GMSE/inst/doc/SI8.pdf |only GMSE-0.6.0.4/GMSE/inst/doc/SI8.pdf.asis |only GMSE-0.6.0.4/GMSE/inst/doc/ms.pdf |binary GMSE-0.6.0.4/GMSE/man/anecdotal.Rd | 15 GMSE-0.6.0.4/GMSE/man/case01plot.Rd | 15 GMSE-0.6.0.4/GMSE/man/count_agent_cells.Rd |only GMSE-0.6.0.4/GMSE/man/gmse.Rd | 136 + GMSE-0.6.0.4/GMSE/man/gmse_apply.Rd | 12 GMSE-0.6.0.4/GMSE/man/gmse_replicates.Rd | 3 GMSE-0.6.0.4/GMSE/man/make_agents.Rd | 78 GMSE-0.6.0.4/GMSE/man/make_interaction_array.Rd | 17 GMSE-0.6.0.4/GMSE/man/make_landscape.Rd | 26 GMSE-0.6.0.4/GMSE/man/make_resource.Rd | 18 GMSE-0.6.0.4/GMSE/man/manager.Rd | 15 GMSE-0.6.0.4/GMSE/man/manager_user_budgets.Rd |only GMSE-0.6.0.4/GMSE/man/observation.Rd | 19 GMSE-0.6.0.4/GMSE/man/owner_land_ssa.Rd |only GMSE-0.6.0.4/GMSE/man/rec.n.Rd | 4 GMSE-0.6.0.4/GMSE/man/resource.Rd | 3 GMSE-0.6.0.4/GMSE/man/ssb.n.Rd | 4 GMSE-0.6.0.4/GMSE/man/user.Rd | 14 GMSE-0.6.0.4/GMSE/src/game.c | 139 - GMSE-0.6.0.4/GMSE/src/gmse_init.c | 12 GMSE-0.6.0.4/GMSE/src/landscape.c |only GMSE-0.6.0.4/GMSE/src/manager.c | 152 + GMSE-0.6.0.4/GMSE/src/resource.c | 201 +- GMSE-0.6.0.4/GMSE/src/user.c | 74 GMSE-0.6.0.4/GMSE/src/utilities.c | 309 ++- GMSE-0.6.0.4/GMSE/src/utilities.h | 18 GMSE-0.6.0.4/GMSE/tests/testthat/test-gmse_apply.R | 143 - GMSE-0.6.0.4/GMSE/tests/testthat/test-gmse_apply_loops.R |only GMSE-0.6.0.4/GMSE/tests/testthat/test-make_agents.R | 19 GMSE-0.6.0.4/GMSE/tests/testthat/test-make_landscape.R | 69 GMSE-0.6.0.4/GMSE/tests/testthat/test-make_resource.R | 2 GMSE-0.6.0.4/GMSE/tests/testthat/test-manager.R | 88 GMSE-0.6.0.4/GMSE/tests/testthat/test-observation.R | 60 GMSE-0.6.0.4/GMSE/tests/testthat/test-resource.R | 82 GMSE-0.6.0.4/GMSE/tests/testthat/test-summary.R | 8 GMSE-0.6.0.4/GMSE/tests/testthat/test-user.R | 110 - GMSE-0.6.0.4/GMSE/vignettes/SI8.pdf.asis |only 65 files changed, 2885 insertions(+), 1223 deletions(-)
Title: Hierarchical Bayesian Analysis of North American BBS Data
Description: The North American Breeding Bird Survey (BBS) is a long-running
program that seeks to monitor the status and trends of the breeding birds in
North America. Since its start in 1966, the BBS has accumulated over 50 years
of data for over 300 species of North American Birds. Given the temporal and
spatial structure of the data, hierarchical Bayesian models are used to assess
the status and trends of these 300+ species of birds. 'bbsBayes' allows you to perform
hierarchical Bayesian analysis of BBS data. You can run a full
model analysis for one or more species that you choose, or you can take
more control and specify how the data should be stratified, prepared
for 'JAGS', or modelled. The functions provided here allow you to replicate
analyses performed by the United State Geological Survey (USGS, see Link
and Sauer (2011) <doi:10.1525/auk.2010.09220>) and Canadian Wildlife Service
(CWS, see Smith and Edwards (2020) <doi:10.1101/2020.03.26.010215>).
Author: Brandon P.M. Edwards [aut, cre],
Adam C. Smith [aut]
Maintainer: Brandon P.M. Edwards <edwardsb@uoguelph.ca>
Diff between bbsBayes versions 2.2.1 dated 2020-05-27 and 2.2.2 dated 2020-05-30
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/generate-indices.R | 5 ++++- R/generate-regional-indices.R | 12 ++++++++++-- README.md | 10 ++++------ inst/CITATION | 12 ++++++++++++ man/figures/WOTH_status_assessment.png |binary 7 files changed, 40 insertions(+), 19 deletions(-)
Title: Effect Size Targeted Bayesian Two-Sample t-Tests via Markov
Chain Monte Carlo in Gaussian Mixture Models
Description: Provides an Markov-Chain-Monte-Carlo algorithm for Bayesian t-tests on the effect size. The underlying Gibbs sampler is based on a two-component Gaussian mixture and approximates the posterior distributions of the effect size, the difference of means and difference of standard deviations. A posterior analysis of the effect size via the region of practical equivalence is provided, too. For more details about the Gibbs sampler see Kelter (2019) <arXiv:1906.07524>.
Author: Riko Kelter
Maintainer: Riko Kelter <riko.kelter@uni-siegen.de>
Diff between bayest versions 1.3 dated 2020-05-27 and 1.4 dated 2020-05-30
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Bayesian Inference in the Analysis of Variance via Markov Chain
Monte Carlo in Gaussian Mixture Models
Description: Provides a Bayesian version of the analysis of variance based on a three-component Gaussian mixture for which a Gibbs sampler produces posterior draws. For details about the Bayesian ANOVA based on Gaussian mixtures, see Kelter (2019) <arXiv:1906.07524>.
Author: Riko Kelter
Maintainer: Riko Kelter <riko.kelter@uni-siegen.de>
Diff between bayesanova versions 1.3 dated 2020-02-11 and 1.4 dated 2020-05-30
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Volume Approximation and Sampling of Convex Polytopes
Description: Provides an R interface for 'volesti' C++ package. 'volesti' computes estimations of volume
of polytopes given by (i) a set of points, (ii) linear inequalities or (iii) Minkowski sum of segments
(a.k.a. zonotopes). There are three algorithms for volume estimation as well as algorithms
for sampling, rounding and rotating polytopes. Moreover, 'volesti' provides algorithms for
estimating copulas useful in computational finance.
Author: Vissarion Fisikopoulos <vissarion.fisikopoulos@gmail.com> [aut, cph, cre],
Apostolos Chalkis <tolis.chal@gmail.com> [cph, aut],
contributors in file inst/AUTHORS
Maintainer: Vissarion Fisikopoulos <vissarion.fisikopoulos@gmail.com>
Diff between volesti versions 1.0.3 dated 2019-09-10 and 1.1.0 dated 2020-05-30
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volesti-1.1.0/volesti/src/include/volume/rotating.hpp |only volesti-1.1.0/volesti/src/include/volume/rounding.hpp |only volesti-1.1.0/volesti/src/include/volume/sampling_policies.hpp |only volesti-1.1.0/volesti/src/include/volume/volume_cooling_balls.hpp |only volesti-1.1.0/volesti/src/include/volume/volume_cooling_gaussians.hpp |only volesti-1.1.0/volesti/src/include/volume/volume_cooling_hpoly.hpp |only volesti-1.1.0/volesti/src/include/volume/volume_sequence_of_balls.hpp |only volesti-1.1.0/volesti/src/inner_ball.cpp |only volesti-1.1.0/volesti/src/poly_gen.cpp | 44 volesti-1.1.0/volesti/src/polytopes_modules.cpp | 98 - volesti-1.1.0/volesti/src/rotating.cpp | 55 volesti-1.1.0/volesti/src/rounding.cpp | 113 - volesti-1.1.0/volesti/src/sample_points.cpp | 578 +++++----- volesti-1.1.0/volesti/src/volume.cpp | 397 +++--- volesti-1.1.0/volesti/src/zonotope_approximation.cpp |only volesti-1.1.0/volesti/tests/testthat.R | 1 volesti-1.1.0/volesti/tests/testthat/test_Hvol.R | 173 -- volesti-1.1.0/volesti/tests/testthat/test_InnerBall.R | 40 volesti-1.1.0/volesti/tests/testthat/test_Vvol.R | 65 - volesti-1.1.0/volesti/tests/testthat/test_Zvol.R | 55 volesti-1.1.0/volesti/tests/testthat/test_copulas.R | 4 volesti-1.1.0/volesti/tests/testthat/test_rounding.R | 40 volesti-1.1.0/volesti/tests/testthat/test_sampling.R | 81 - 141 files changed, 2035 insertions(+), 1952 deletions(-)
Title: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs
Fitted Using 'mgcv'
Description: Graceful 'ggplot'-based graphics and utility functions for working with generalized additive models (GAMs) fitted using the 'mgcv' package. Provides a reimplementation of the plot() method for GAMs that 'mgcv' provides, as well as 'tidyverse' compatible representations of estimated smooths.
Author: Gavin L. Simpson [aut, cre] (<https://orcid.org/0000-0002-9084-8413>),
Henrik Singmann [ctb] (<https://orcid.org/0000-0002-4842-3657>)
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between gratia versions 0.3.1 dated 2020-03-29 and 0.4.1 dated 2020-05-30
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Title: Multiple Responses Subgroup Identification using 'GUIDE'
Algorithm
Description: An R implementation of 'GUIDE' style algorithm focusing on subgroup identification problem
under multiple responses of Loh et al. (2019) <doi:10.1002/widm.1326>. This package is intended for use
for randomized trials and observational studies.
Author: Peigen Zhou [aut, cre] (<https://orcid.org/0000-0003-4609-0374>),
Wei-Yin Loh [aut] (<https://orcid.org/0000-0001-6983-2495>)
Maintainer: Peigen Zhou <pzhou9@wisc.edu>
Diff between MrSGUIDE versions 0.1.0 dated 2020-05-29 and 0.1.1 dated 2020-05-30
DESCRIPTION | 8 - MD5 | 8 - NEWS.md | 4 inst/doc/UsageOfMrSGUIDE.html | 226 ++++++++++++++++++++++-------------------- src/regression.cpp | 6 - 5 files changed, 135 insertions(+), 117 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates
graphics with details from statistical tests included in the plots
themselves. It is targeted primarily at behavioral sciences community
to provide a one-line code to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports only the most common types of
statistical tests: parametric, nonparametric, robust, and bayesian
versions of t-test/anova, correlation analyses, contingency table
analysis, meta-analysis, and regression analyses.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.4.0 dated 2020-04-15 and 0.5.0 dated 2020-05-30
ggstatsplot-0.4.0/ggstatsplot/man/figures/README-theme_ggstatsplot-1.png |only ggstatsplot-0.4.0/ggstatsplot/tests/testthat/test-helpers_ggbetweenstats.R |only ggstatsplot-0.5.0/ggstatsplot/DESCRIPTION | 28 ggstatsplot-0.5.0/ggstatsplot/MD5 | 164 +- ggstatsplot-0.5.0/ggstatsplot/NAMESPACE | 9 ggstatsplot-0.5.0/ggstatsplot/NEWS.md | 54 ggstatsplot-0.5.0/ggstatsplot/R/attach.R |only ggstatsplot-0.5.0/ggstatsplot/R/ggbarstats.R | 17 ggstatsplot-0.5.0/ggstatsplot/R/ggbetweenstats.R | 28 ggstatsplot-0.5.0/ggstatsplot/R/ggcoefstats.R | 135 -- ggstatsplot-0.5.0/ggstatsplot/R/ggcorrmat.R | 28 ggstatsplot-0.5.0/ggstatsplot/R/ggdotplotstats.R | 11 ggstatsplot-0.5.0/ggstatsplot/R/gghistostats.R | 14 ggstatsplot-0.5.0/ggstatsplot/R/ggpiestats.R | 34 ggstatsplot-0.5.0/ggstatsplot/R/ggwithinstats.R | 47 ggstatsplot-0.5.0/ggstatsplot/R/helpers_ggbetweenstats_graphics.R | 100 - ggstatsplot-0.5.0/ggstatsplot/R/helpers_ggcoefstats_graphics.R | 37 ggstatsplot-0.5.0/ggstatsplot/R/helpers_messages.R | 2 ggstatsplot-0.5.0/ggstatsplot/R/helpers_theme_ggstatsplot.R | 41 ggstatsplot-0.5.0/ggstatsplot/R/reexports.R | 10 ggstatsplot-0.5.0/ggstatsplot/README.md | 115 - ggstatsplot-0.5.0/ggstatsplot/inst/CITATION | 8 ggstatsplot-0.5.0/ggstatsplot/inst/WORDLIST | 2 ggstatsplot-0.5.0/ggstatsplot/inst/doc/additional.html | 17 ggstatsplot-0.5.0/ggstatsplot/man/aesthetic_addon.Rd | 135 -- ggstatsplot-0.5.0/ggstatsplot/man/cat_counter.Rd | 4 ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggbarstats1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggbetweenstats1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggbetweenstats2-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggbetweenstats3-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggcoefstats1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggcoefstats2-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggcorrmat1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggcorrmat2-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggdotplotstats1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggdotplotstats2-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-gghistostats1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-gghistostats2-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggpiestats1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggpiestats2-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggpiestats3-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggscatterstats1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggscatterstats3-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggwithinstats1-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ggwithinstats2-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/README-ridgeplot-1.png |binary ggstatsplot-0.5.0/ggstatsplot/man/figures/ggstatsverse.jpg |only ggstatsplot-0.5.0/ggstatsplot/man/figures/logo.png |binary ggstatsplot-0.5.0/ggstatsplot/man/ggbarstats.Rd | 38 ggstatsplot-0.5.0/ggstatsplot/man/ggbetweenstats.Rd | 8 ggstatsplot-0.5.0/ggstatsplot/man/ggcoefstats.Rd | 70 - ggstatsplot-0.5.0/ggstatsplot/man/ggcoefstats_label_maker.Rd | 18 ggstatsplot-0.5.0/ggstatsplot/man/ggcorrmat.Rd | 49 ggstatsplot-0.5.0/ggstatsplot/man/ggdotplotstats.Rd | 5 ggstatsplot-0.5.0/ggstatsplot/man/gghistostats.Rd | 7 ggstatsplot-0.5.0/ggstatsplot/man/ggpiestats.Rd | 45 ggstatsplot-0.5.0/ggstatsplot/man/ggsignif_adder.Rd | 4 ggstatsplot-0.5.0/ggstatsplot/man/ggstatsplot-package.Rd | 5 ggstatsplot-0.5.0/ggstatsplot/man/ggwithinstats.Rd | 7 ggstatsplot-0.5.0/ggstatsplot/man/grouped_ggbarstats.Rd | 31 ggstatsplot-0.5.0/ggstatsplot/man/grouped_ggbetweenstats.Rd | 3 ggstatsplot-0.5.0/ggstatsplot/man/grouped_ggcorrmat.Rd | 59 ggstatsplot-0.5.0/ggstatsplot/man/grouped_ggdotplotstats.Rd | 5 ggstatsplot-0.5.0/ggstatsplot/man/grouped_gghistostats.Rd | 5 ggstatsplot-0.5.0/ggstatsplot/man/grouped_ggpiestats.Rd | 87 - ggstatsplot-0.5.0/ggstatsplot/man/grouped_ggwithinstats.Rd | 3 ggstatsplot-0.5.0/ggstatsplot/man/histo_labeller.Rd | 2 ggstatsplot-0.5.0/ggstatsplot/man/reexports.Rd | 4 ggstatsplot-0.5.0/ggstatsplot/tests/testthat/test-ggbarstats.R | 1 ggstatsplot-0.5.0/ggstatsplot/tests/testthat/test-ggbetweenstats.R | 53 ggstatsplot-0.5.0/ggstatsplot/tests/testthat/test-ggcoefstats.R | 379 ----- ggstatsplot-0.5.0/ggstatsplot/tests/testthat/test-ggpiestats.R | 4 ggstatsplot-0.5.0/ggstatsplot/tests/testthat/test-ggwithinstats.R | 22 ggstatsplot-0.5.0/ggstatsplot/tests/testthat/test-helper_messages.R | 2 ggstatsplot-0.5.0/ggstatsplot/tests/testthat/test-pairwise_ggsignif.R | 23 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/faq.Rmd | 21 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/ggbetweenstats.Rmd | 53 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/ggcoefstats.Rmd | 674 +++++----- ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/ggcorrmat.Rmd | 3 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/ggdotplotstats.Rmd | 1 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/gghistostats.Rmd | 9 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/ggpiestats.Rmd | 12 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/ggscatterstats.Rmd | 3 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/ggwithinstats.Rmd | 8 ggstatsplot-0.5.0/ggstatsplot/vignettes/web_only/purrr_examples.Rmd | 32 85 files changed, 1000 insertions(+), 1795 deletions(-)
Title: Workflow for Open Reproducible Code in Science
Description: Create reproducible and transparent research projects in 'R', with
a minimal amount of code. This package is based on the Workflow for Open
Reproducible Code in Science (WORCS), a step-by-step procedure based on best
practices for
Open Science. It includes an 'RStudio' project template, several
convenience functions, and all dependencies required to make your project
reproducible and transparent. WORCS is explained in the tutorial paper
by Van Lissa, Brandmaier, Brinkman, Lamprecht, Struiksma, & Vreede (2020).
<doi:10.17605/OSF.IO/ZCVBS>.
Author: Caspar J. van Lissa [aut, cre]
(<https://orcid.org/0000-0002-0808-5024>),
Aaron Peikert [aut] (<https://orcid.org/0000-0001-7813-818X>),
Andreas M. Brandmaier [aut] (<https://orcid.org/0000-0001-8765-6982>)
Maintainer: Caspar J. van Lissa <c.j.vanlissa@uu.nl>
Diff between worcs versions 0.1.1 dated 2020-05-18 and 0.1.2 dated 2020-05-30
worcs-0.1.1/worcs/inst/rstudio/templates/project/resources/worcs_badge.png |only worcs-0.1.2/worcs/DESCRIPTION | 21 - worcs-0.1.2/worcs/MD5 | 70 ++- worcs-0.1.2/worcs/NAMESPACE | 2 worcs-0.1.2/worcs/R/citations.R | 208 +++++----- worcs-0.1.2/worcs/R/export.R | 29 - worcs-0.1.2/worcs/R/github.R | 86 ++-- worcs-0.1.2/worcs/R/misc.R | 13 worcs-0.1.2/worcs/R/save_load.R | 154 +++++-- worcs-0.1.2/worcs/R/synthetic.R | 27 + worcs-0.1.2/worcs/R/worcs_checklist.R | 3 worcs-0.1.2/worcs/R/worcs_project.R | 118 +++-- worcs-0.1.2/worcs/build/vignette.rds |binary worcs-0.1.2/worcs/inst/doc/citation.R |only worcs-0.1.2/worcs/inst/doc/citation.Rmd |only worcs-0.1.2/worcs/inst/doc/citation.html |only worcs-0.1.2/worcs/inst/doc/git_cloud.R |only worcs-0.1.2/worcs/inst/doc/git_cloud.Rmd |only worcs-0.1.2/worcs/inst/doc/git_cloud.html |only worcs-0.1.2/worcs/inst/doc/setup.R | 7 worcs-0.1.2/worcs/inst/doc/setup.Rmd | 30 - worcs-0.1.2/worcs/inst/doc/setup.html | 110 ----- worcs-0.1.2/worcs/inst/doc/workflow.R |only worcs-0.1.2/worcs/inst/doc/workflow.Rmd |only worcs-0.1.2/worcs/inst/doc/workflow.html |only worcs-0.1.2/worcs/inst/rstudio/templates/project/resources/README.md | 75 +-- worcs-0.1.2/worcs/inst/rstudio/templates/project/resources/references.bib | 29 - worcs-0.1.2/worcs/inst/rstudio/templates/project/resources/worcs_icon.png |only worcs-0.1.2/worcs/inst/rstudio/templates/project/worcs.dcf | 4 worcs-0.1.2/worcs/man/closed_data.Rd | 15 worcs-0.1.2/worcs/man/git_user.Rd | 10 worcs-0.1.2/worcs/man/has_git_user.Rd |only worcs-0.1.2/worcs/man/load_data.Rd | 1 worcs-0.1.2/worcs/man/open_data.Rd | 15 worcs-0.1.2/worcs/man/synthetic.Rd | 6 worcs-0.1.2/worcs/man/worcs_checklist.Rd | 3 worcs-0.1.2/worcs/man/worcs_project.Rd | 10 worcs-0.1.2/worcs/tests/testthat/test-test-closed_data.R | 11 worcs-0.1.2/worcs/vignettes/citation.Rmd |only worcs-0.1.2/worcs/vignettes/gh_release.png |only worcs-0.1.2/worcs/vignettes/git_cloud.Rmd |only worcs-0.1.2/worcs/vignettes/scholar_bib.png |only worcs-0.1.2/worcs/vignettes/setup.Rmd | 30 - worcs-0.1.2/worcs/vignettes/vignettes.bib |only worcs-0.1.2/worcs/vignettes/workflow.Rmd |only 45 files changed, 602 insertions(+), 485 deletions(-)
Title: Optimal Capital Allocations
Description: Computes optimal capital allocations based on some standard principles such as Haircut, Overbeck type II and the Covariance Allocation Principle. It also provides some shortcuts for obtaining the Value at Risk and the Expectation Shortfall, using both the normal and the t-student distribution, see Urbina and Guillén (2014)<doi:10.1016/j.eswa.2014.05.017> and Urbina (2013)<http://hdl.handle.net/2099.1/19443>.
Author: Jilber Urbina
Maintainer: Jilber Urbina <JilberUrbina@banpro.com.ni>
Diff between OCA versions 0.1 dated 2017-02-07 and 0.2 dated 2020-05-30
DESCRIPTION | 10 ++--- MD5 | 6 +-- R/VaR.R | 101 ++++++++++++++++++++++++++++++++++++++---------------------- man/VaR.Rd | 8 +--- 4 files changed, 75 insertions(+), 50 deletions(-)
Title: Latent Class Analysis with Grouped Data
Description: Fits latent class analysis (LCA) including group variable and covariates.
The group variable can be handled either by multilevel LCA described in Vermunt (2003) <DOI:10.1111/j.0081-1750.2003.t01-1-00131.x> or standard LCA at each level of group variable.
The covariates can be incorporated in the form of logistic regression (Bandeen-Roche et al. (1997) <DOI:10.1080/01621459.1997.10473658>).
Author: Youngsun Kim,
Hwan Chung
Maintainer: Youngsun Kim <kim0sun@korea.ac.kr>
Diff between glca versions 0.1.0 dated 2020-05-29 and 0.1.1 dated 2020-05-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/partial.rdb |binary src/glca.cpp | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Triangulation of Irregularly Spaced Data
Description: A constrained two-dimensional Delaunay triangulation package
providing both triangulation and generation of voronoi mosaics of
irregular spaced data.
Author: Fortran code by R. J. Renka.
R functions by Albrecht Gebhardt <albrecht.gebhardt@aau.at>.
With contributions from Stephen Eglen <stephen@anc.ed.ac.uk>,
Sergei Zuyev <sergei@stams.strath.ac.uk> and
Denis White <white.denis@epamail.epa.gov>
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between tripack versions 1.3-9 dated 2020-03-06 and 1.3-9.1 dated 2020-05-30
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/tripack.h | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Interpolation of Irregularly and Regularly Spaced Data
Description: Several cubic spline interpolation methods of H. Akima for irregular and
regular gridded data are available through this package, both for the bivariate case
(irregular data: ACM 761, regular data: ACM 760) and univariate case (ACM 433 and ACM 697).
Linear interpolation of irregular gridded data is also covered by reusing D. J. Renkas
triangulation code which is part of Akimas Fortran code. A bilinear interpolator
for regular grids was also added for comparison with the bicubic interpolator on
regular grids.
Author: Hiroshi Akima [aut, cph] (Fortran code (TOMS 760, 761, 697 and 433)),
Albrecht Gebhardt [aut, cre, cph] (R port (interp* functions), bicubic*
functions),
Thomas Petzold [ctb, cph] (aspline function),
Martin Maechler [ctb, cph] (interp2xyz function + enhancements),
YYYY Association for Computing Machinery, Inc. [cph] (covers code from
TOMS 760, 761, 697 and 433)
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between akima versions 0.6-2 dated 2016-12-19 and 0.6-2.1 dated 2020-05-30
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- src/akima.h | 32 +++++++++++++++++--------------- src/akima.h.keep |only src/init.c | 1 + 5 files changed, 25 insertions(+), 21 deletions(-)
Title: Convert Between 'R' Objects and Javascript Object Notation
(JSON)
Description: Conversions between 'R' objects and Javascript Object Notation (JSON) using
the 'rapidjsonr' library <https://CRAN.R-project.org/package=rapidjsonr>.
Author: David Cooley [aut, cre],
Chris Muir [ctb],
Brendan Knapp [ctb] (<https://orcid.org/0000-0003-3284-4972>)
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between jsonify versions 1.1.1 dated 2020-03-14 and 1.2.0 dated 2020-05-30
DESCRIPTION | 18 LICENSE |only MD5 | 31 - NEWS.md | 5 README.md | 16 build/vignette.rds |binary inst/doc/jsonify.html | 14 inst/include/jsonify/from_json/api.hpp | 26 - inst/include/jsonify/from_json/from_json.hpp | 289 ++++------- inst/include/jsonify/from_json/from_json_utils.hpp | 20 inst/include/jsonify/from_json/simplify/simplify.hpp | 472 +++++++------------ inst/include/jsonify/jsonify.hpp | 4 inst/include/jsonify/to_json/utils.hpp | 5 src/from_json.cpp | 2 src/read_json.cpp | 6 tests/testthat/test-from_json.R | 3 tests/testthat/test-from_json_simplify.R | 12 17 files changed, 399 insertions(+), 524 deletions(-)
Title: 'dplyr' Extension for Common Panel Data Maneuvers
Description: Using the 'dplyr' package as a base, adds a family of functions designed to make manipulating panel data easier. Allows the addition of indexing variables to a tibble to create a pibble, and the manipulation of data based on those indexing variables.
Author: Nick Huntington-Klein [aut, cre]
(<https://orcid.org/0000-0002-7352-3991>),
Philip Khor [aut] (<https://orcid.org/0000-0002-8333-1256>)
Maintainer: Nick Huntington-Klein <nhuntington-klein@fullerton.edu>
Diff between pmdplyr versions 0.3.1.1 dated 2020-05-15 and 0.3.3 dated 2020-05-30
DESCRIPTION | 14 MD5 | 54 +-- NAMESPACE | 2 NEWS.md | 8 R/inexact_join.R | 33 + R/major_mutate_variations.R | 2 R/panel_consistency.R | 59 ++- R/panel_convert.R | 40 +- R/pibble.R | 2 R/tbl_pb_methods.R | 31 + R/tlag.R | 6 build/vignette.rds |binary inst/doc/dplyr_variants.html | 524 +++++++++++++++--------------- inst/doc/panel_tools.R | 2 inst/doc/panel_tools.Rmd | 2 inst/doc/panel_tools.html | 550 ++++++++++++++++---------------- inst/doc/pmdplyr.html | 338 +++++++++---------- man/SPrail.Rd | 6 man/Scorecard.Rd | 6 man/join.Rd | 47 +- man/mutate_cascade.Rd | 2 man/pipe.Rd | 24 - tests/testthat/test-bad_input.R | 1 tests/testthat/test-inexact_join.R | 17 tests/testthat/test-panel_consistency.R | 9 tests/testthat/test-panel_convert.R | 1 tests/testthat/test-pibble.R | 4 vignettes/panel_tools.Rmd | 2 28 files changed, 973 insertions(+), 813 deletions(-)
Title: ExifTool Functionality from R
Description: Reads, writes, and edits EXIF and other file metadata
using ExifTool <https://exiftool.org/>,
returning read results as a data frame. ExifTool supports many
different metadata formats including EXIF, GPS, IPTC, XMP, JFIF,
GeoTIFF, ICC Profile, Photoshop IRB, FlashPix, AFCP and ID3, as
well as the maker notes of many digital cameras by Canon, Casio,
DJI, FLIR, FujiFilm, GE, GoPro, HP, JVC/Victor, Kodak, Leaf,
Minolta/Konica-Minolta, Motorola, Nikon, Nintendo, Olympus/Epson,
Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh, Samsung,
Sanyo, Sigma/Foveon and Sony.
Author: Joshua O'Brien [aut, cre]
Maintainer: Joshua O'Brien <joshmobrien@gmail.com>
Diff between exiftoolr versions 0.1.2 dated 2019-06-07 and 0.1.3 dated 2020-05-30
DESCRIPTION | 14 ++-- MD5 | 17 ++--- NAMESPACE | 2 R/exif_read.R | 46 +++++++------- R/install.R |only R/utils.R | 145 ++++++++------------------------------------- man/configure_exiftoolr.Rd | 58 +++++++++--------- man/exif_call.Rd | 143 ++++++++++++++++++++++---------------------- man/exif_read.Rd | 141 +++++++++++++++++++++---------------------- man/install_exiftool.Rd | 77 +++++++++++++---------- 10 files changed, 280 insertions(+), 363 deletions(-)
Title: Mixed-Effect Models, Particularly Spatial Models
Description: Inference based on mixed-effect models, including generalized linear mixed models with spatial correlations and models with non-Gaussian random effects (e.g., Beta). Both classical geostatistical models, and Markov random field models on irregular grids, can be fitted. Variation in residual variance (heteroscedasticity) can itself be represented by a generalized linear mixed model. Various approximations of likelihood or restricted likelihood are implemented, in particular h-likelihood (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) and Laplace approximation.
Author: François Rousset [aut, cre, cph]
(<https://orcid.org/0000-0003-4670-0371>),
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut] (<https://orcid.org/0000-0003-0637-2959>),
GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 3.2.0 dated 2020-04-20 and 3.3.0 dated 2020-05-30
spaMM-3.2.0/spaMM/tests/testthat/test-Matern-spprec.R |only spaMM-3.3.0/spaMM/DESCRIPTION | 15 spaMM-3.3.0/spaMM/MD5 | 234 +++++---- spaMM-3.3.0/spaMM/NAMESPACE | 4 spaMM-3.3.0/spaMM/R/COMPoisson.R | 2 spaMM-3.3.0/spaMM/R/HLCor.R | 35 - spaMM-3.3.0/spaMM/R/HLCor_body.R | 78 --- spaMM-3.3.0/spaMM/R/HLFactorList.R | 83 +-- spaMM-3.3.0/spaMM/R/HLfit.R | 26 - spaMM-3.3.0/spaMM/R/HLfit_Internals.R | 235 ++++++---- spaMM-3.3.0/spaMM/R/HLfit_body.R | 209 ++++---- spaMM-3.3.0/spaMM/R/HLframes.R | 63 +- spaMM-3.3.0/spaMM/R/LR.R | 75 ++- spaMM-3.3.0/spaMM/R/LevM_v_h.R | 7 spaMM-3.3.0/spaMM/R/LevM_v_h_spprec.R | 7 spaMM-3.3.0/spaMM/R/MakeCovEst.R | 31 - spaMM-3.3.0/spaMM/R/RcppExports.R | 4 spaMM-3.3.0/spaMM/R/bloc_lambda.R | 12 spaMM-3.3.0/spaMM/R/calc_LRT.R | 4 spaMM-3.3.0/spaMM/R/calc_logdisp_cov.R | 31 - spaMM-3.3.0/spaMM/R/confint.R | 76 ++- spaMM-3.3.0/spaMM/R/corrHLfit.R | 198 ++------ spaMM-3.3.0/spaMM/R/corrHLfit_body.R | 1 spaMM-3.3.0/spaMM/R/corrMM.LRT.R | 3 spaMM-3.3.0/spaMM/R/corrPars.R | 18 spaMM-3.3.0/spaMM/R/correlationFns.R | 2 spaMM-3.3.0/spaMM/R/cov_new_fix.R | 66 +- spaMM-3.3.0/spaMM/R/determine_spprec.R | 106 +--- spaMM-3.3.0/spaMM/R/extractors.R | 181 ++----- spaMM-3.3.0/spaMM/R/fit_as_ZX.R | 14 spaMM-3.3.0/spaMM/R/fit_as_sparsePrecision.R | 7 spaMM-3.3.0/spaMM/R/fitme.R | 175 +------ spaMM-3.3.0/spaMM/R/fitme_body.R | 3 spaMM-3.3.0/spaMM/R/fitmecorrHLfit_body_internals.R | 9 spaMM-3.3.0/spaMM/R/geo_info.R | 6 spaMM-3.3.0/spaMM/R/get_cPredVar.R | 8 spaMM-3.3.0/spaMM/R/hatvalues.R |only spaMM-3.3.0/spaMM/R/locoptim.R | 1 spaMM-3.3.0/spaMM/R/multiFRK.R | 4 spaMM-3.3.0/spaMM/R/negbin.R | 26 + spaMM-3.3.0/spaMM/R/newPLS.R | 8 spaMM-3.3.0/spaMM/R/plot.HLfit.R | 8 spaMM-3.3.0/spaMM/R/postfit_internals.R | 57 +- spaMM-3.3.0/spaMM/R/predict.R | 88 ++- spaMM-3.3.0/spaMM/R/predict_marg.R | 4 spaMM-3.3.0/spaMM/R/preprocess.R | 205 ++++---- spaMM-3.3.0/spaMM/R/preprocess_internals.R | 215 +++++++-- spaMM-3.3.0/spaMM/R/sXaug_EigenDense_QRP_Chol_scaled.R | 2 spaMM-3.3.0/spaMM/R/sXaug_Matrix_QRP_CHM.R | 11 spaMM-3.3.0/spaMM/R/sXaug_sparsePrecisions.R | 41 + spaMM-3.3.0/spaMM/R/save.R | 14 spaMM-3.3.0/spaMM/R/separator.R | 128 +++-- spaMM-3.3.0/spaMM/R/simulate.HL.R | 13 spaMM-3.3.0/spaMM/R/source_MV.R | 2 spaMM-3.3.0/spaMM/R/spaMM.data.R | 14 spaMM-3.3.0/spaMM/R/spaMM_boot.R | 74 ++- spaMM-3.3.0/spaMM/R/summary.HL.R | 49 +- spaMM-3.3.0/spaMM/R/update.HL.R | 13 spaMM-3.3.0/spaMM/R/utils.R | 29 + spaMM-3.3.0/spaMM/build/partial.rdb |binary spaMM-3.3.0/spaMM/inst/NEWS.Rd | 47 ++ spaMM-3.3.0/spaMM/man/AIC.Rd | 3 spaMM-3.3.0/spaMM/man/COMPoisson.Rd | 19 spaMM-3.3.0/spaMM/man/CauchyCorr.Rd | 4 spaMM-3.3.0/spaMM/man/HLCor.Rd | 15 spaMM-3.3.0/spaMM/man/HLfit.Rd | 64 -- spaMM-3.3.0/spaMM/man/IMRF.Rd | 52 +- spaMM-3.3.0/spaMM/man/Loaloa.Rd | 14 spaMM-3.3.0/spaMM/man/Matern.corr.Rd | 16 spaMM-3.3.0/spaMM/man/anova.HLfit.Rd | 15 spaMM-3.3.0/spaMM/man/arabidopsis.Rd | 12 spaMM-3.3.0/spaMM/man/autoregressive.Rd | 44 - spaMM-3.3.0/spaMM/man/confint.Rd | 36 - spaMM-3.3.0/spaMM/man/convergence.Rd | 2 spaMM-3.3.0/spaMM/man/corrHLfit.Rd | 28 - spaMM-3.3.0/spaMM/man/corrMatrix.Rd | 10 spaMM-3.3.0/spaMM/man/covStruct.Rd | 42 - spaMM-3.3.0/spaMM/man/dopar.Rd | 10 spaMM-3.3.0/spaMM/man/extractors.Rd | 6 spaMM-3.3.0/spaMM/man/fitme.Rd | 13 spaMM-3.3.0/spaMM/man/fixed.LRT.Rd | 11 spaMM-3.3.0/spaMM/man/get_inits_from_fit.Rd | 7 spaMM-3.3.0/spaMM/man/get_matrix.Rd | 6 spaMM-3.3.0/spaMM/man/get_ranPars.Rd | 7 spaMM-3.3.0/spaMM/man/hatvalues.HLfit.Rd |only spaMM-3.3.0/spaMM/man/how.Rd | 2 spaMM-3.3.0/spaMM/man/is_separated.Rd | 6 spaMM-3.3.0/spaMM/man/libraries.Rd |only spaMM-3.3.0/spaMM/man/make.scaled.dist.Rd | 13 spaMM-3.3.0/spaMM/man/mapMM.Rd | 17 spaMM-3.3.0/spaMM/man/method.Rd |only spaMM-3.3.0/spaMM/man/options.Rd | 2 spaMM-3.3.0/spaMM/man/phiHGLM.Rd | 33 - spaMM-3.3.0/spaMM/man/plot.HL.Rd | 12 spaMM-3.3.0/spaMM/man/predict.Rd | 11 spaMM-3.3.0/spaMM/man/random-effects.Rd |only spaMM-3.3.0/spaMM/man/salamander.Rd | 13 spaMM-3.3.0/spaMM/man/scotlip.Rd | 5 spaMM-3.3.0/spaMM/man/seaMask.Rd | 34 - spaMM-3.3.0/spaMM/man/seeds.Rd | 10 spaMM-3.3.0/spaMM/man/simulate.Rd | 3 spaMM-3.3.0/spaMM/man/spaMM.Rd | 115 ++-- spaMM-3.3.0/spaMM/man/spaMM_boot.Rd | 17 spaMM-3.3.0/spaMM/man/sparse_precision.Rd | 5 spaMM-3.3.0/spaMM/man/vcov.Rd | 15 spaMM-3.3.0/spaMM/src/RcppExports.cpp | 15 spaMM-3.3.0/spaMM/src/spaMM_linear.cpp | 102 +++- spaMM-3.3.0/spaMM/tests/test-all.R | 3 spaMM-3.3.0/spaMM/tests/testthat/test-CAR.R | 2 spaMM-3.3.0/spaMM/tests/testthat/test-IsoriX.R | 2 spaMM-3.3.0/spaMM/tests/testthat/test-augZXy.R | 6 spaMM-3.3.0/spaMM/tests/testthat/test-confint.R | 8 spaMM-3.3.0/spaMM/tests/testthat/test-dhglm.R | 1 spaMM-3.3.0/spaMM/tests/testthat/test-negbin1.R | 2 spaMM-3.3.0/spaMM/tests/testthat/test-predVar-Matern-corrMatrix.R |only spaMM-3.3.0/spaMM/tests/testthat/test-predVar.R | 3 spaMM-3.3.0/spaMM/tests/testthat/test-ranCoefs.R | 2 spaMM-3.3.0/spaMM/tests/testthat/test-random-slope.R | 8 spaMM-3.3.0/spaMM/tests/testthat/test-separation.R | 2 spaMM-3.3.0/spaMM/tests/testthat/test-simulate.R | 2 spaMM-3.3.0/spaMM/tests/testthat/test-truncated.R | 2 spaMM-3.3.0/spaMM/tests/testthat/test_outer.R |only 122 files changed, 2201 insertions(+), 1789 deletions(-)
Title: Functions for Analyzing and Plotting Estuary Monitoring Data
Description: Tools for performing routine analysis and plotting tasks with environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <http://cdmo.baruch.sc.edu/>. This package builds
on the functionality of the SWMPr package <https://cran.r-project.org/package=SWMPr>,
which is used to retrieve and organize the data. The combined set of tools
address common challenges associated with continuous time series data
for environmental decision making, and are intended for use in annual reporting activities.
References:
Beck, Marcus W. (2016) <ISSN 2073-4859><https://journal.r-project.org/archive/2016-1/beck.pdf>
Rudis, Bob (2014) <https://rud.is/b/2014/11/16/moving-the-earth-well-alaska-hawaii-with-r/>.
United States Environmental Protection Agency (2015) <https://cfpub.epa.gov/si/si_public_record_Report.cfm?dirEntryId=327030>.
United States Environmental Protection Agency (2012) <http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.646.1973&rep=rep1&type=pdf>.
Author: Julie Padilla [aut, ctb],
Marcus Beck [ctb],
Kimberly Cressman [ctb],
Dave Eslinger [cre, ctb],
Bob Rudis [ctb]
Maintainer: Dave Eslinger <dave.eslinger@noaa.gov>
Diff between SWMPrExtension versions 1.1.4 dated 2020-05-04 and 1.1.5 dated 2020-05-30
DESCRIPTION | 9 - MD5 | 45 ++++---- NAMESPACE | 3 NEWS.md | 3 R/lm_p_labs.R | 83 +++++++++++---- R/seasonal_dot.R | 2 data/datalist |only man/cbm_spatial.Rd | 44 ++++---- man/create_sk_national_ft_results.Rd | 82 +++++++-------- man/elk_spatial.Rd | 44 ++++---- man/elknmnut.Rd | 44 ++++---- man/elksmwq.Rd | 44 ++++---- man/historical_range.Rd | 180 +++++++++++++++++----------------- man/lm_p_labs.Rd | 2 man/load_shp_file.Rd | 52 +++++----- man/national_sk_map.Rd | 116 +++++++++++----------- man/res_custom_sk_map.Rd | 142 +++++++++++++-------------- man/res_local_map.Rd | 182 +++++++++++++++++------------------ man/res_national_map.Rd | 120 +++++++++++------------ man/res_sk_map.Rd | 182 +++++++++++++++++------------------ man/reserve_locs.Rd | 52 +++++----- man/sampling_stations.Rd | 44 ++++---- man/seasonal_dot.Rd | 2 man/us_laea.Rd | 44 ++++---- 24 files changed, 782 insertions(+), 739 deletions(-)
More information about SWMPrExtension at CRAN
Permanent link
Title: Parse and Test Robots Exclusion Protocol Files and Rules
Description: The 'Robots Exclusion Protocol' <https://www.robotstxt.org/orig.html> documents
a set of standards for allowing or excluding robot/spider crawling of different areas of
site content. Tools are provided which wrap The 'rep-cpp' <https://github.com/seomoz/rep-cpp>
C++ library for processing these 'robots.txt' files.
Author: Bob Rudis (bob@rud.is) [aut, cre], SEOmoz, Inc [aut]
Maintainer: Bob Rudis <bob@rud.is>
Diff between spiderbar versions 0.2.2 dated 2019-08-19 and 0.2.3 dated 2020-05-30
spiderbar-0.2.2/spiderbar/tests/test-all.R |only spiderbar-0.2.2/spiderbar/tests/testthat |only spiderbar-0.2.3/spiderbar/DESCRIPTION | 12 ++++++------ spiderbar-0.2.3/spiderbar/MD5 | 24 ++++++++++++------------ spiderbar-0.2.3/spiderbar/NEWS.md | 6 ++++++ spiderbar-0.2.3/spiderbar/R/can-fetch.r | 3 ++- spiderbar-0.2.3/spiderbar/R/crawl-delay.r | 2 +- spiderbar-0.2.3/spiderbar/R/robxp.r | 8 +++++--- spiderbar-0.2.3/spiderbar/inst/tinytest |only spiderbar-0.2.3/spiderbar/man/can_fetch.Rd | 5 ++++- spiderbar-0.2.3/spiderbar/man/crawl_delays.Rd | 8 ++++---- spiderbar-0.2.3/spiderbar/man/robxp.Rd | 8 +++----- spiderbar-0.2.3/spiderbar/man/sitemaps.Rd | 2 +- spiderbar-0.2.3/spiderbar/man/spiderbar.Rd | 1 - spiderbar-0.2.3/spiderbar/tests/tinytest.R |only 15 files changed, 44 insertions(+), 35 deletions(-)
Title: Identify Influential Observations in Binary Classification
Description: Ke, B. S., Chiang, A. J., & Chang, Y. C. I. (2018) <doi:10.1080/10543406.2017.1377728> provide two theoretical methods (influence function and local influence) based on the area under the receiver operating characteristic curve (AUC) to quantify the numerical impact of each observation to the overall AUC. Alternative graphical tools, cumulative lift charts, are proposed to reveal the existences and approximate locations of those influential observations through data visualization.
Author: Bo-Shiang Ke [cre, aut, cph],
Yuan-chin Ivan Chang [aut],
Wen-Ting Wang [aut]
Maintainer: Bo-Shiang Ke <naivete0907@gmail.com>
Diff between influenceAUC versions 0.1.1 dated 2020-02-19 and 0.1.2 dated 2020-05-30
influenceAUC-0.1.1/influenceAUC/README.md |only influenceAUC-0.1.2/influenceAUC/DESCRIPTION | 8 influenceAUC-0.1.2/influenceAUC/MD5 | 29 - influenceAUC-0.1.2/influenceAUC/NAMESPACE | 3 influenceAUC-0.1.2/influenceAUC/R/reporter.R | 37 ++ influenceAUC-0.1.2/influenceAUC/R/utils.R | 197 +++++++----- influenceAUC-0.1.2/influenceAUC/man/IAUC.Rd | 146 ++++---- influenceAUC-0.1.2/influenceAUC/man/LAUC.Rd | 108 +++--- influenceAUC-0.1.2/influenceAUC/man/fetch_output_indeces.Rd |only influenceAUC-0.1.2/influenceAUC/man/pinpoint.Rd |only influenceAUC-0.1.2/influenceAUC/man/plot.IAUC.Rd | 2 influenceAUC-0.1.2/influenceAUC/man/plot.ICLC.Rd | 2 influenceAUC-0.1.2/influenceAUC/man/plot.LAUC.Rd | 2 influenceAUC-0.1.2/influenceAUC/man/plot_sequentially.Rd | 28 - influenceAUC-0.1.2/influenceAUC/man/print.IAUC.Rd | 2 influenceAUC-0.1.2/influenceAUC/man/print.LAUC.Rd | 2 influenceAUC-0.1.2/influenceAUC/man/print_output.Rd | 2 17 files changed, 323 insertions(+), 245 deletions(-)
Title: Fractional Factorial Designs with 2-Level Factors
Description: Regular and non-regular Fractional Factorial 2-level designs
can be created. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between FrF2 versions 2.2-1 dated 2020-05-29 and 2.2-2 dated 2020-05-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/makecatlg.R | 11 +++++++---- inst/NEWS | 6 ++++++ man/makecatlg.Rd | 10 +++++----- 5 files changed, 25 insertions(+), 16 deletions(-)
Title: 'Drat' R Archive Template
Description: Creation and use of R Repositories via helper functions
to insert packages into a repository, and to add repository information
to the current R session. Two primary types of repositories are support:
gh-pages at GitHub, as well as local repositories on either the same machine
or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel with contributions by Carl Boettiger, Neal Fultz,
Sebastian Gibb, Colin Gillespie, Jan Górecki, Matt Jones, Thomas Leeper,
Steven Pav, Jan Schulz, Christoph Stepper and Felix G.M. Ernst.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between drat versions 0.1.5 dated 2019-03-28 and 0.1.6 dated 2020-05-30
drat-0.1.5/drat/man/getPathForPackage.Rd |only drat-0.1.6/drat/ChangeLog | 395 ++++++++++--------- drat-0.1.6/drat/DESCRIPTION | 12 drat-0.1.6/drat/MD5 | 43 +- drat-0.1.6/drat/R/archivePackages.R | 22 - drat-0.1.6/drat/R/insertPackage.R | 91 ++-- drat-0.1.6/drat/R/pruneRepo.R | 14 drat-0.1.6/drat/README.md | 27 - drat-0.1.6/drat/build/vignette.rds |binary drat-0.1.6/drat/inst/NEWS.Rd | 12 drat-0.1.6/drat/inst/doc/CombiningDratAndTravis.html | 36 + drat-0.1.6/drat/inst/doc/DratFAQ.html | 65 +-- drat-0.1.6/drat/inst/doc/DratForPackageAuthors.R | 6 drat-0.1.6/drat/inst/doc/DratForPackageAuthors.html | 71 ++- drat-0.1.6/drat/inst/doc/DratForPackageUsers.R | 4 drat-0.1.6/drat/inst/doc/DratForPackageUsers.html | 63 +-- drat-0.1.6/drat/inst/doc/WhyDrat.R | 6 drat-0.1.6/drat/inst/doc/WhyDrat.html | 67 +-- drat-0.1.6/drat/man/addRepo.Rd | 1 drat-0.1.6/drat/man/archivePackages.Rd | 16 drat-0.1.6/drat/man/identifyPackageType.Rd | 4 drat-0.1.6/drat/man/insertPackage.Rd | 11 drat-0.1.6/drat/man/pruneRepo.Rd | 16 23 files changed, 572 insertions(+), 410 deletions(-)
Title: Bayesian Analysis of Quantile Regression Models
Description: Bayesian estimation and variable selection for quantile regression models.
Author: Rahim Alhamzawi
Maintainer: Rahim Alhamzawi (University of Al-Qadisiyah) <rahim.alhamzawi@qu.edu.iq>
Diff between Brq versions 2.5 dated 2019-04-15 and 3.0 dated 2020-05-30
DESCRIPTION | 10 ++-- MD5 | 22 ++++---- R/Brq.default.R | 44 +++++++++++++++-- R/model.R | 22 ++++++++ R/plot.Brq.R | 137 +++++++++++++++++++++++++++++--------------------------- R/summary.Brq.R | 23 +++++++++ data/wheat.rda |binary man/DIC.Rd | 5 +- man/ImmunogG.Rd | 3 - man/USgirl.Rd | 3 - man/plot.Brq.Rd | 4 - man/wheat.Rd | 28 ++++------- 12 files changed, 189 insertions(+), 112 deletions(-)