Title: Diverse Datasets for 'tsibble'
Description: Provides diverse datasets in the 'tsibble' data structure. These datasets are useful for learning and demonstrating how tidy temporal data can tidied, visualised, and forecasted.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between tsibbledata versions 0.1.0 dated 2019-06-15 and 0.2.0 dated 2020-06-04
DESCRIPTION | 13 +++++----- MD5 | 58 ++++++++++++++++++++++----------------------- NEWS.md | 5 +++ R/data.R | 49 +++++++++++++++++++++++++++++--------- README.md | 19 ++++++++++---- data/PBS.rda |binary data/ansett.rda |binary data/aus_livestock.rda |binary data/aus_production.rda |binary data/aus_retail.rda |binary data/gafa_stock.rda |binary data/global_economy.rda |binary data/hh_budget.rda |binary data/nyc_bikes.rda |binary data/olympic_running.rda |binary data/pelt.rda |binary data/vic_elec.rda |binary man/PBS.Rd | 6 +++- man/ansett.Rd | 9 ++++++ man/aus_livestock.Rd | 8 +++++- man/aus_production.Rd | 6 +++- man/aus_retail.Rd | 9 ++++++ man/gafa_stock.Rd | 8 +++++- man/global_economy.Rd | 10 ++++++- man/hh_budget.Rd | 6 +++- man/nyc_bikes.Rd | 8 +++++- man/olympic_running.Rd | 14 +++++++--- man/pelt.Rd | 8 +++++- man/tsibbledata-package.Rd | 3 +- man/vic_elec.Rd | 7 +++-- 30 files changed, 172 insertions(+), 74 deletions(-)
Title: Spatial Analysis and Modelling Utilities
Description: Utilities to support spatial data manipulation, query, sampling
and modelling. Functions include models for species population density, download
utilities for climate and global deforestation spatial products, spatial
smoothing, multivariate separability, point process model for creating pseudo-
absences and sub-sampling, polygon and point-distance landscape metrics,
auto-logistic model, sampling models, cluster optimization, statistical
exploratory tools and raster-based metrics.
Author: Jeffrey S. Evans [aut, cre],
Melanie A. Murphy [ctb],
Karthik Ram [ctb]
Maintainer: Jeffrey S. Evans <jeffrey_evans@tnc.org>
Diff between spatialEco versions 1.3-1 dated 2020-04-01 and 1.3-2 dated 2020-06-04
DESCRIPTION | 25 ++- MD5 | 272 ++++++++++++++++++++++-------------------- NAMESPACE | 11 + R/annulus.matrix.R | 16 +- R/background.R |only R/breeding.density.R | 4 R/class.comparison.R | 65 ++++------ R/classBreaks.R | 4 R/colinear.R | 22 +-- R/combine.R |only R/cor.data.R | 3 R/correlogram.R | 32 ++-- R/cross.tab.R |only R/crossCorrelation.R | 8 - R/daymet.point.R | 15 +- R/daymet.tiles.R | 6 R/download.daymet.R | 76 +---------- R/download.hansen.R | 9 - R/download.prism.R | 25 +-- R/effect.size.R | 5 R/erase.points.R | 64 ++++++--- R/explode.R | 4 R/extract_vertices.R |only R/geo.buffer.R |only R/hli.R | 76 +++++++---- R/hybrid.kmeans.R | 7 - R/idw.smoothing.R | 13 +- R/insert.R |only R/is.empty.R |only R/is.whole.R |only R/kendall.R | 2 R/knn.R | 4 R/loess.boot.R | 3 R/loess.ci.R | 12 + R/logistic.regression.R | 5 R/morans.plot.R | 35 ++--- R/mwCorr.R | 2 R/nni.R | 7 - R/o.ring.R | 23 +-- R/oli.aws.R | 18 ++ R/optimal.k.R | 8 - R/overlap.R | 20 +-- R/parea.sample.R | 5 R/partial.cor.R | 4 R/point.in.poly.R | 1 R/poly.regression.R | 15 +- R/pp.subsample.R | 2 R/proximity.index.R | 6 R/pseudo.absence.R | 4 R/raster.change.R | 10 + R/raster.deviation.R | 12 + R/raster.downscale.R | 25 ++- R/raster.entropy.R | 8 - R/raster.gaussian.smooth.R | 2 R/raster.invert.R | 8 - R/raster.kendall.R | 55 +++++--- R/raster.mds.R | 3 R/raster.modified.ttest.R | 4 R/raster.vol.R | 10 - R/rasterCorrelation.R | 5 R/remove.holes.R | 7 - R/sa.trans.R | 2 R/sample.annulus.R | 2 R/sample.line.R | 10 - R/sample.poly.R | 4 R/sample.transect.R | 4 R/separability.R | 5 R/shift.R | 3 R/similarity.R | 7 - R/smooth.time.series.R | 16 +- R/sobel.R | 5 R/sp.kde.R | 2 R/sp.na.omit.R | 2 R/spatial.select.R | 10 + R/spherical.sd.R | 4 R/stratified.random.R | 2 R/subsample.distance.R | 2 R/swvi.R | 10 - R/topo.distance.R | 10 - R/tpi.R | 3 R/trasp.R | 2 R/trend.line.R | 5 R/vrm.R | 4 R/winsorize.R | 13 +- R/wt.centroids.R | 4 R/zonal.stats.R | 2 inst/NEWS | 36 +++++ man/annulus.matrix.Rd | 13 +- man/background.Rd |only man/breeding.density.Rd | 2 man/class.comparison.Rd | 19 +- man/classBreaks.Rd | 4 man/collinear.Rd | 6 man/combine.Rd |only man/cor.data.Rd | 2 man/correlogram.Rd | 30 +--- man/cross.tab.Rd |only man/crossCorrelation.Rd | 2 man/daymet.point.Rd | 8 - man/daymet.tiles.Rd | 6 man/download.daymet.Rd | 80 ++---------- man/download.hansen.Rd | 5 man/download.prism.Rd | 18 +- man/erase.point.Rd | 36 +++-- man/extract.vertices.Rd |only man/geo.buffer.Rd |only man/hli.Rd | 22 ++- man/hybrid.kmeans.Rd | 6 man/idw.smoothing.Rd | 11 - man/insert.Rd |only man/is.empty.Rd |only man/is.whole.Rd |only man/loess.boot.Rd | 2 man/loess.ci.Rd | 12 + man/morans.plot.Rd | 33 ++--- man/mwCorr.Rd | 2 man/nni.Rd | 28 ++-- man/o.ring.Rd | 23 +-- man/oli.asw.Rd | 16 +- man/optimal.k.Rd | 2 man/overlap.Rd | 6 man/partial.cor.Rd | 2 man/poly.regression.Rd | 15 +- man/raster.change.Rd | 2 man/raster.deviation.Rd | 8 - man/raster.downscale.Rd | 23 ++- man/raster.entropy.Rd | 2 man/raster.gaussian.smooth.Rd | 2 man/raster.invert.Rd | 3 man/raster.kendall.Rd | 21 ++- man/raster.mds.Rd | 3 man/raster.modified.ttest.Rd | 3 man/raster.vol.Rd | 8 - man/rasterCorrelation.Rd | 3 man/remove.holes.Rd | 3 man/sample.line.Rd | 4 man/shift.Rd | 3 man/similarity.Rd | 1 man/sobal.Rd | 5 man/spatial.select.Rd | 4 man/swvi.Rd | 2 man/topo.distance.Rd | 6 man/tpi.Rd | 3 man/trend.line.Rd | 5 man/winsorize.Rd | 11 - 145 files changed, 969 insertions(+), 823 deletions(-)
Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a unified
interface for model fitting, prediction, performance assessment, and
presentation of results. Approaches for model fitting and prediction of
numerical, categorical, or censored time-to-event outcomes include
traditional regression models, regularization methods, tree-based methods,
support vector machines, neural networks, ensembles, data preprocessing,
filtering, and model tuning and selection. Performance metrics are provided
for model assessment and can be estimated with independent test sets, split
sampling, cross-validation, or bootstrap resampling. Resample estimation
can be executed in parallel for faster processing and nested in cases of
model tuning and selection. Modeling results can be summarized with
descriptive statistics; calibration curves; variable importance; partial
dependence plots; confusion matrices; and ROC, lift, and other performance
curves.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 2.3.0 dated 2020-05-13 and 2.4.0 dated 2020-06-04
DESCRIPTION | 8 +++--- MD5 | 34 ++++++++++++++-------------- NEWS.md | 55 ++++++++-------------------------------------- R/ML_StackedModel.R | 22 ++++++++++-------- R/ML_SuperModel.R | 31 +++++++++++++++---------- R/TrainedInputs.R | 6 ++--- R/TrainedModels.R | 4 +-- R/calibration.R | 8 +++--- R/predict.R | 21 ++++++++++++----- R/print.R | 2 - R/resample.R | 39 +++++++++++++++++--------------- R/utils.R | 7 ++++- inst/doc/MLModels.html | 4 +-- inst/doc/UsersGuide.Rmd | 14 +++++------ inst/doc/UsersGuide.html | 24 ++++++++++---------- man/TunedInput.Rd | 2 - tests/testthat/Rplots.pdf |binary vignettes/UsersGuide.Rmd | 14 +++++------ 18 files changed, 142 insertions(+), 153 deletions(-)
Title: A 'Java' Platform Integration for 'R' with Programming Languages
'Groovy', 'JavaScript', 'JRuby' ('Ruby'), 'Jython' ('Python'),
and 'Kotlin'
Description: Provides a high-level integration for the 'Java' platform that makes 'Java' objects easy to use from within 'R'; provides a unified interface to integrate 'R' with several programming languages; and features extensive data exchange between 'R' and 'Java'. The 'jsr223'-supported programming languages include 'Groovy', 'JavaScript', 'JRuby' ('Ruby'), 'Jython' ('Python'), and 'Kotlin'. Any of these languages can use and extend 'Java' classes in natural syntax. Furthermore, solutions developed in any of the 'jsr223'-supported languages are also accessible to 'R' developers. The 'jsr223' package also features callbacks, script compiling, and string interpolation. In all, 'jsr223' significantly extends the computing capabilities of the 'R' software environment.
Author: Floid R. Gilbert [aut, cre],
David B. Dahl [aut]
Maintainer: Floid R. Gilbert <floid.r.gilbert@gmail.com>
Diff between jsr223 versions 0.3.3 dated 2018-12-12 and 0.3.4 dated 2020-06-04
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- NEWS | 4 ++++ build/vignette.rds |binary inst/doc/jsr223.pdf |binary 6 files changed, 14 insertions(+), 10 deletions(-)
Title: Visualization of Regression Models
Description: Provides a convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R ('lm', 'glm', 'coxph', 'rlm', 'gam', 'locfit', 'lmer', 'randomForest', etc.)
Author: Patrick Breheny, Woodrow Burchett
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between visreg versions 2.6.1 dated 2020-03-13 and 2.7.0 dated 2020-06-04
DESCRIPTION | 9 ++--- MD5 | 38 +++++++++++---------- NEWS | 8 ++++ R/factorPlot.R | 82 ++++++++++++++++++++++++++++++++++------------ R/ggContPlot.R | 45 +++++++++++++++++++------ R/ggFactorPlot.R | 79 +++++++++++++++++++++++++++++--------------- R/plot-visreg.R | 18 ++++++---- R/setupD.R | 6 +-- R/setupF.R | 5 ++ R/visregFactorPanel.R | 30 +++++++++++----- R/visregLatticePlot.R | 4 +- R/visregOverlayPlot.R | 64 ++++++++++++++++++++++++----------- R/visregPanel.R | 16 +++++++- R/visregPlot.R | 18 ++++++---- README.md | 20 ++++++++--- build/vignette.rds |binary inst/doc/quick-start.html | 64 +++++++++++++++++++++-------------- inst/tests/ggplot.R | 12 ++++++ inst/tests/top.R |only man/plot.visreg.Rd | 25 ++++++++------ tests/run/test-top.R |only 21 files changed, 372 insertions(+), 171 deletions(-)
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression. Bayesian methods are implemented for binary and ordinal logistic regression with or without random effects.
Author: Frank E Harrell Jr <f.harrell@vanderbilt.edu>
Maintainer: Frank E Harrell Jr <f.harrell@vanderbilt.edu>
Diff between rms versions 5.1-4 dated 2019-11-17 and 6.0-0 dated 2020-06-04
DESCRIPTION | 22 +-- MD5 | 121 +++++++++++------ NAMESPACE | 31 +++- NEWS | 33 ++++ R/Function.rms.s | 18 +- R/Predict.s | 43 ++++-- R/anova.rms.s | 293 ++++++++++++++++++++++++++++++------------- R/blrm.r |only R/calibrate.psm.s | 22 +-- R/contrast.s | 127 ++++++++++++++++-- R/nomogram.s | 29 +++- R/ols.s | 7 - R/orm.fit.s | 80 ++++++----- R/plot.contrast.r |only R/predictrms.s | 73 +++++++--- R/psm.s | 40 ++--- R/residuals.lrm.s | 58 +++++--- R/rms.s | 40 ++++- R/rmsMisc.s | 70 +++++++--- R/stackMI.r |only R/stanMisc.r |only R/summary.rms.s | 38 ++++- R/val.surv.s | 30 +--- R/validate.psm.s | 56 ++++---- R/which.influence.s | 64 ++++----- README.md | 10 - inst/tests/blrm-contrast.r |only inst/tests/blrm-po.r |only inst/tests/blrm-ppo.r |only inst/tests/blrm-pred.r |only inst/tests/blrm.Rmd |only inst/tests/calibrate.cph.r | 25 +-- inst/tests/cphtdc.r | 15 +- inst/tests/mice.r | 2 inst/tests/orm-bootcov.r | 45 ++++++ inst/tests/orm-profile.r | 19 +- inst/tests/orm.s | 19 ++ inst/tests/psm.s | 31 ++++ inst/tests/robcov_Yuqi.r |only inst/tests/val.surv.data.txt |only inst/tests/val.surv.s | 27 +++ inst/tests/which.influence.r |only man/ExProb.blrm.Rd |only man/Function.Rd | 7 - man/HPDint.Rd |only man/Mean.blrm.Rd |only man/PostF.Rd |only man/Predict.Rd | 9 + man/Quantile.blrm.Rd |only man/anova.rms.Rd | 22 ++- man/blrm.Rd |only man/blrmStats.Rd |only man/coef.rmsb.Rd |only man/compareBmods.Rd |only man/contrast.Rd | 62 +++++++-- man/distSym.Rd |only man/nomogram.Rd | 7 - man/orm.Rd | 2 man/pdensityContour.Rd |only man/plot.PostF.Rd |only man/plot.contrast.rms.Rd |only man/plot.rmsb.Rd |only man/predict.blrm.Rd |only man/predictrms.Rd | 26 +++ man/print.blrm.Rd |only man/print.blrmStats.Rd |only man/print.predict.blrm.Rd |only man/print.rmsb.Rd |only man/residuals.lrm.Rd | 3 man/rms-internal.Rd | 1 man/rmsMisc.Rd | 13 + man/selectedQr.Rd |only man/stackMI.Rd |only man/stanCompile.Rd |only man/stanDx.Rd |only man/stanDxplot.Rd |only man/stanGet.Rd |only man/summary.rms.Rd | 11 + man/tauFetch.Rd |only man/vcov.rmsb.Rd |only man/zzzrmsOverview.Rd | 28 ++-- 81 files changed, 1207 insertions(+), 472 deletions(-)
Title: Tools to Match Financial Portfolios with Climate Data
Description: These tools implement in R a fundamental part of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
portfolios and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. This package matches data from
financial portfolios to asset level data from market-intelligence
databases (e.g. power plant capacities, emission factors, etc.). This
is the first step to assess if a financial portfolio aligns with
climate goals.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.match versions 0.0.1 dated 2020-03-28 and 0.0.2 dated 2020-06-04
DESCRIPTION | 11 ++++---- MD5 | 33 ++++++++++++------------ NEWS.md |only R/add_sector_and_borderline.R | 4 +- R/match_name.R | 9 ++---- R/prioritize.R | 12 ++++---- R/restructure_loanbook_for_matching.R | 8 +++-- R/score_alias_similarity.R | 4 +- R/select_chr.R | 2 - R/to_alias.R | 2 - R/uniquify_id_column.R | 8 ++--- README.md | 23 ++++++++++------ man/match_name.Rd | 8 ++--- man/prioritize.Rd | 4 +- man/prioritize_level.Rd | 2 - man/r2dii.match-package.Rd | 1 tests/testthat/helper-fake_lbk.R | 12 ++++---- tests/testthat/test-add_sector_and_borderline.R | 9 ++---- 18 files changed, 81 insertions(+), 71 deletions(-)
Title: 'Java' Data Exchange for 'R' and 'rJava'
Description: Simplifies and extends data exchange between 'R' and 'Java'.
Author: Floid R. Gilbert [aut, cre],
David B. Dahl [aut]
Maintainer: Floid R. Gilbert <floid.r.gilbert@gmail.com>
Diff between jdx versions 0.1.3 dated 2018-03-29 and 0.1.4 dated 2020-06-04
DESCRIPTION | 8 MD5 | 18 - NEWS | 7 R/Private.R | 6 R/Public.R | 2 build/vignette.rds |binary inst/doc/Introduction.R | 48 ++-- inst/doc/Introduction.Rmd | 2 inst/doc/Introduction.html | 462 +++++++++++++++++++++++++++++++++------------ vignettes/Introduction.Rmd | 2 10 files changed, 402 insertions(+), 153 deletions(-)
Title: Summarize Data for Publication
Description: A set of tools for preparing and summarizing data for publication purposes. Includes functions for tabulating models, means to produce human-readable summary statistics from raw data, macros for calculating duration of time, and simplistic hypothesis testing tools.
Author: Eric Finnesgard [aut, cre]
Maintainer: Eric Finnesgard <efinite@outlook.com>
Diff between utile.tools versions 0.2.5 dated 2020-04-30 and 0.2.6 dated 2020-06-04
utile.tools-0.2.5/utile.tools/R/tabulate.R |only utile.tools-0.2.5/utile.tools/man/tabulate_at_risk.Rd |only utile.tools-0.2.6/utile.tools/DESCRIPTION | 8 utile.tools-0.2.6/utile.tools/MD5 | 38 - utile.tools-0.2.6/utile.tools/NAMESPACE | 1 utile.tools-0.2.6/utile.tools/NEWS.md | 9 utile.tools-0.2.6/utile.tools/R/calc.R | 198 +++++---- utile.tools-0.2.6/utile.tools/R/chunk.R | 72 +-- utile.tools-0.2.6/utile.tools/R/paste.R | 367 +++++++++--------- utile.tools-0.2.6/utile.tools/R/test.R | 164 ++++---- utile.tools-0.2.6/utile.tools/R/utils.R | 15 utile.tools-0.2.6/utile.tools/README.md | 51 +- utile.tools-0.2.6/utile.tools/man/calc_chunks.Rd | 62 +-- utile.tools-0.2.6/utile.tools/man/calc_duration.Rd | 37 + utile.tools-0.2.6/utile.tools/man/chunk_data_.Rd | 8 utile.tools-0.2.6/utile.tools/man/paste.Rd | 8 utile.tools-0.2.6/utile.tools/man/paste_efs.Rd | 13 utile.tools-0.2.6/utile.tools/man/paste_freq.Rd | 20 utile.tools-0.2.6/utile.tools/man/paste_mean.Rd | 8 utile.tools-0.2.6/utile.tools/man/paste_median.Rd | 8 utile.tools-0.2.6/utile.tools/man/test_hypothesis.Rd | 12 21 files changed, 564 insertions(+), 535 deletions(-)
Title: Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
Description: Functions for estimating structural equation models using
instrumental variables.
Author: Zachary Fisher [aut, cre],
Kenneth Bollen [aut],
Kathleen Gates [aut],
Mikko Rönkkö [aut]
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between MIIVsem versions 0.5.4 dated 2019-05-01 and 0.5.5 dated 2020-06-04
DESCRIPTION | 6 ++-- MD5 | 10 ++++--- R/MIIVsem-data.R | 65 ++++++++++++++++++++++++++++++++++++++++++++++++ R/est2SLSCoef.R | 8 ++--- R/fitFinalGimmeModels.R | 9 +++--- data/reisenzein1986.rda |only man/reisenzein1986.Rd |only 7 files changed, 83 insertions(+), 15 deletions(-)
Title: Interface to 'Matba Rofex' Trading API
Description: Execute API calls to the 'Matba Rofex' <https://apihub.primary.com.ar> trading platform. Functionality includes accessing account data and current holdings, retrieving investment quotes, placing and canceling orders, and getting reference data for instruments.
Author: Augusto Hassel [aut, cre],
Juan Francisco Gomez [ctb],
Matba Rofex [cph]
Maintainer: Augusto Hassel <ahassel@primary.com.ar>
Diff between rRofex versions 1.6.11 dated 2020-05-26 and 2.0.0 dated 2020-06-04
DESCRIPTION | 11 ++--- MD5 | 64 ++++++++++++++++++------------ NAMESPACE | 10 ++++ NEWS.md | 27 ++++++++++++ R/functions.R | 49 ++++++++++++++++------ R/functions_helpers.R | 4 + R/functions_websocket.R |only R/globals.R | 2 R/rRofex.R | 7 ++- R/s4_object.R | 8 ++- README.md | 19 +++++++- build |only man/dot-validate_fecha.Rd | 1 man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-soft-deprecated.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/figures/logo.png |binary man/rRofexConnection.Rd | 1 man/rRofex_connection.Rd | 1 man/trading_account.Rd | 1 man/trading_account_report.Rd | 1 man/trading_cancel_order.Rd | 1 man/trading_currencies.Rd | 1 man/trading_instruments.Rd | 1 man/trading_instruments_fronts.Rd | 1 man/trading_login.Rd | 1 man/trading_lookup.Rd | 1 man/trading_md.Rd | 2 man/trading_mdh.Rd | 1 man/trading_new_order.Rd | 1 man/trading_orders.Rd | 1 man/trading_ws_close.Rd |only man/trading_ws_md.Rd |only man/trading_ws_orders.Rd |only 40 files changed, 164 insertions(+), 53 deletions(-)
Title: Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted
Analysis
Description: Paired mass distance (PMD) analysis proposed in Yu, Olkowicz and Pawliszyn (2018) <doi:10.1016/j.aca.2018.10.062> for gas/liquid chromatography–mass spectrometry (GC/LC-MS) based non-targeted analysis. PMD analysis including GlobalStd algorithm and structure/reaction directed analysis. GlobalStd algorithm could found independent peaks in m/z-retention time profiles based on retention time hierarchical cluster analysis and frequency analysis of paired mass distances within retention time groups. Structure directed analysis could be used to find potential relationship among those independent peaks in different retention time groups based on frequency of paired mass distances. A GUI for PMD analysis is also included as a 'shiny' application.
Author: Miao YU [aut, cre] (<https://orcid.org/0000-0002-2804-6014>)
Maintainer: Miao YU <yufreecas@gmail.com>
Diff between pmd versions 0.1.5 dated 2019-08-22 and 0.1.9 dated 2020-06-04
pmd-0.1.5/pmd/data/datalist |only pmd-0.1.5/pmd/data/hmdbp.rda |only pmd-0.1.5/pmd/man/hmdbp.Rd |only pmd-0.1.9/pmd/DESCRIPTION | 14 pmd-0.1.9/pmd/MD5 | 66 +- pmd-0.1.9/pmd/NAMESPACE | 5 pmd-0.1.9/pmd/NEWS.md | 27 + pmd-0.1.9/pmd/R/data.R | 16 pmd-0.1.9/pmd/R/pmd.R | 522 ++++++++++++--------- pmd-0.1.9/pmd/R/pmdanno.R |only pmd-0.1.9/pmd/R/shiny.R | 11 pmd-0.1.9/pmd/README.md | 21 pmd-0.1.9/pmd/build/vignette.rds |binary pmd-0.1.9/pmd/data/hmdb.rda |binary pmd-0.1.9/pmd/data/keggrall.rda |binary pmd-0.1.9/pmd/data/omics.rda |binary pmd-0.1.9/pmd/data/spmeinvivo.rda |binary pmd-0.1.9/pmd/inst/doc/globalstd.R | 109 ++-- pmd-0.1.9/pmd/inst/doc/globalstd.Rmd | 90 ++- pmd-0.1.9/pmd/inst/doc/globalstd.html | 786 ++++++++++++++++++++------------- pmd-0.1.9/pmd/inst/shinyapp/pmd.Rmd | 176 ++++++- pmd-0.1.9/pmd/inst/shinyapp/pmdnet.Rmd |only pmd-0.1.9/pmd/man/getchain.Rd | 21 pmd-0.1.9/pmd/man/getms2pmd.Rd |only pmd-0.1.9/pmd/man/getmspmd.Rd |only pmd-0.1.9/pmd/man/getpaired.Rd | 4 pmd-0.1.9/pmd/man/getpmd.Rd | 3 pmd-0.1.9/pmd/man/getposneg.Rd |only pmd-0.1.9/pmd/man/getreact.Rd | 14 pmd-0.1.9/pmd/man/getsda.Rd | 16 pmd-0.1.9/pmd/man/globalstd.Rd | 19 pmd-0.1.9/pmd/man/hmdb.Rd | 13 pmd-0.1.9/pmd/man/keggrall.Rd | 7 pmd-0.1.9/pmd/man/omics.Rd | 6 pmd-0.1.9/pmd/man/pmdanno.Rd |only pmd-0.1.9/pmd/man/runPMDnet.Rd |only pmd-0.1.9/pmd/man/sda.Rd | 6 pmd-0.1.9/pmd/man/spmeinvivo.Rd | 6 pmd-0.1.9/pmd/vignettes/globalstd.Rmd | 90 ++- 39 files changed, 1328 insertions(+), 720 deletions(-)
Title: Build Data Structures for Common Statistical Analysis
Description: Use a consistent syntax to create data structures
of common statistical techniques that can be continued in a pipe
chain. Design the analysis, add settings and variables, construct the
results, and polish the final structure. Rinse and repeat for any
number of statistical techniques.
Author: Luke Johnston [aut, cre] (<https://orcid.org/0000-0003-4169-2616>)
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Diff between mason versions 0.2.6 dated 2018-07-05 and 0.3.0 dated 2020-06-04
mason-0.2.6/mason/R/sysdata.rda |only mason-0.3.0/mason/DESCRIPTION | 45 +- mason-0.3.0/mason/MD5 | 60 +-- mason-0.3.0/mason/NAMESPACE | 9 mason-0.3.0/mason/NEWS.md | 18 + mason-0.3.0/mason/R/add_settings.R | 3 mason-0.3.0/mason/R/construct.R | 80 ++-- mason-0.3.0/mason/R/construction_base.R | 64 ++- mason-0.3.0/mason/R/design.R | 2 mason-0.3.0/mason/R/mason-package.R | 15 mason-0.3.0/mason/R/polish.R |only mason-0.3.0/mason/R/scrub.R | 119 +------ mason-0.3.0/mason/R/tidying.R |only mason-0.3.0/mason/R/utils-tidy-eval.R |only mason-0.3.0/mason/R/utils.R | 28 - mason-0.3.0/mason/README.md | 27 - mason-0.3.0/mason/build/vignette.rds |binary mason-0.3.0/mason/inst/doc/mason.R | 20 - mason-0.3.0/mason/inst/doc/mason.html | 306 ++++++++++--------- mason-0.3.0/mason/man/add_settings.Rd | 56 ++- mason-0.3.0/mason/man/add_variables.Rd | 7 mason-0.3.0/mason/man/construct.Rd | 9 mason-0.3.0/mason/man/design.Rd | 2 mason-0.3.0/mason/man/mason.Rd | 11 mason-0.3.0/mason/man/polish.Rd | 4 mason-0.3.0/mason/man/scrub.Rd | 21 + mason-0.3.0/mason/man/tidy_up.Rd |only mason-0.3.0/mason/tests/testthat/helper.R |only mason-0.3.0/mason/tests/testthat/test-cor.R | 2 mason-0.3.0/mason/tests/testthat/test-gee.R | 33 +- mason-0.3.0/mason/tests/testthat/test-glm-binomial.R | 21 - mason-0.3.0/mason/tests/testthat/test-glm-gaussian.R | 21 - mason-0.3.0/mason/tests/testthat/test-pls.R | 48 ++ mason-0.3.0/mason/tests/testthat/test-ttest.R | 15 34 files changed, 582 insertions(+), 464 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.0.7 dated 2020-04-29 and 1.0.8 dated 2020-06-04
DESCRIPTION | 8 - MD5 | 16 +- NEWS.md | 4 R/tb1.R | 20 +-- R/tb1simple.R | 16 +- build/vignette.rds |binary inst/doc/jsmodule.html | 308 ++++++++++++++++++++++++++++++++++++++++--------- man/tb1module.Rd | 5 man/tb1module2.Rd | 7 - 9 files changed, 299 insertions(+), 85 deletions(-)
Title: Markov Beta and Gamma Processes for Modeling Hazard Rates
Description: Computes the hazard rate estimate as described by Nieto-Barajas and Walker (2002), Nieto-Barajas (2003) and Nieto-Barajas, L. E., & Yin, G. (2008).
Author: L. E. Nieto-Barajas, J. A. Garcia Bueno and E.A. Morones Ishikawa
Maintainer: Emilio Akira Morones Ishikawa <emiliomorones@gmail.com>
Diff between BGPhazard versions 2.0.0 dated 2020-01-13 and 2.0.1 dated 2020-06-04
DESCRIPTION | 6 MD5 | 39 - R/BeMRes.R | 13 R/BePloth.R | 89 +-- R/CCuPloth.R | 72 +- R/CGaPloth.R | 52 + R/CuMRes.R | 2 R/CuPloth.R | 38 - R/GaPloth.R | 32 - R/Tao.R | 3 README.md |only inst/doc/BGPhazard.Rnw | 1318 ++++++++++++++++++++++++------------------------ inst/doc/BGPhazard.pdf |binary man/BeMRes.Rd | 14 man/BePloth.Rd | 6 man/CCuPloth.Rd | 4 man/CGaPloth.Rd | 8 man/CuMRes.Rd | 11 man/CuPloth.Rd | 6 man/GaPloth.Rd | 6 vignettes/BGPhazard.Rnw | 1318 ++++++++++++++++++++++++------------------------ 21 files changed, 1557 insertions(+), 1480 deletions(-)
Title: A Graphical Interface to Perform STOCSY Analyses on NMR Data
Description: Launches a 'shiny' based application for Nuclear Magnetic Resonance (NMR)data importation and Statistical TOtal Correlation SpectroscopY (STOCSY) analyses in a full interactive approach. The theoretical background and applications of STOCSY method could be found at Cloarec, O., Dumas, M. E., Craig, A., Barton, R. H., Trygg, J., Hudson, J., Blancher, C., Gauguier, D., Lindon, J. C., Holmes, E. & Nicholson, J. (2005) <doi:10.1021/ac048630x>. The packeage is also available on github <https://github.com/LaCiDIAUFG/iSTATS>.
Author: Luiz Henrique Keng Queiroz Junior[aut,cre], Vitor Mendes de Oliveira [aut]
Maintainer: Luiz Henrique Keng Queiroz Junior <keng@ufg.br>
Diff between iSTATS versions 1.3 dated 2020-05-29 and 1.4 dated 2020-06-04
DESCRIPTION | 10 +++--- MD5 | 13 ++++----- inst/app/Pretreatment_server.R | 3 +- inst/app/Pretreatment_ui.R | 2 - inst/app/functions.R | 59 +++++++++++++++++++++++++++++------------ inst/app/global.R | 4 +- inst/app/ui.R | 2 - inst/app/www/iSTATS_logo.png |only 8 files changed, 60 insertions(+), 33 deletions(-)
More information about ImpactEffectsize at CRAN
Permanent link
Title: Bayesian Inference for A|B and Bandit Marketing Tests
Description: Uses simple Bayesian conjugate prior update rules to calculate
the win probability of each option, value remaining in the test, and
percent lift over the baseline for various marketing objectives.
References:
Fink, Daniel (1997) "A Compendium of Conjugate Priors" <https://www.johndcook.com/CompendiumOfConjugatePriors.pdf>.
Stucchio, Chris (2015) "Bayesian A/B Testing at VWO" <http://cdn2.hubspot.net/hubfs/310840/VWO_SmartStats_technical_whitepaper.pdf>.
Author: Ryan Angi
Maintainer: Ryan Angi <rangi@redventures.com>
Diff between grizbayr versions 1.2.1 dated 2020-05-11 and 1.2.2 dated 2020-06-04
DESCRIPTION | 8 +- MD5 | 17 ++-- NEWS.md |only R/estimate_all_values.R | 2 R/estimate_lift.R | 12 +-- R/estimate_win_prob_given_posterior.R | 5 - inst/doc/intro.html | 124 +++++++++++++++++----------------- man/estimate_all_values.Rd | 2 man/estimate_lift.Rd | 13 +-- tests/testthat/test-estimate_lift.R | 21 +++++ 10 files changed, 112 insertions(+), 92 deletions(-)
Title: GC/LC-MS Data Analysis for Environmental Science
Description: Gas/Liquid Chromatography-Mass Spectrometer(GC/LC-MS) Data Analysis for Environmental Science. This package covered topics such molecular isotope ratio, matrix effects and Short-Chain Chlorinated Paraffins analysis etc. in environmental analysis.
Author: Miao YU [aut, cre] (<https://orcid.org/0000-0002-2804-6014>),
Thanh Wang [ctb] (<https://orcid.org/0000-0002-5729-1908>)
Maintainer: Miao YU <yufreecas@gmail.com>
Diff between enviGCMS versions 0.6.0 dated 2020-02-03 and 0.6.6 dated 2020-06-04
DESCRIPTION | 21 - MD5 | 66 ++-- NAMESPACE | 9 NEWS.md | 33 ++ R/getmzrt.R | 76 +++-- R/io.R | 58 +++ R/mda.R | 37 ++ R/msmsanno.R |only R/plotmzrt.R | 599 +++++++++++++++++++++++++++++++---------- README.md | 6 build/vignette.rds |binary data/list.rda |binary inst/doc/GCMSDA.html | 14 inst/doc/PooledQC.R | 17 - inst/doc/PooledQC.Rmd | 28 + inst/doc/PooledQC.html | 116 ++++--- inst/shinyapps/MDPlot/server.R | 3 inst/shinyapps/MDPlot/ui.R | 7 inst/shinyapps/sccp/server.R | 8 man/TBBPA.Rd | 4 man/dotpanno.Rd |only man/findlipid.Rd |only man/getMSP.Rd |only man/getdoe.Rd | 4 man/getformula.Rd | 4 man/getrangecsv.Rd |only man/list.Rd | 4 man/plotanno.Rd |only man/plotden.Rd | 2 man/plothm.Rd | 2 man/plotpca.Rd | 2 man/plotpeak.Rd |only man/plotridge.Rd |only man/plotridges.Rd | 8 man/plotrla.Rd | 2 man/plotrug.Rd |only man/sccp.Rd | 6 man/xrankanno.Rd |only vignettes/PooledQC.Rmd | 28 + 39 files changed, 851 insertions(+), 313 deletions(-)
Title: Obtain Rules from Rule Based Models as Tidy Dataframe
Description: Utility to convert text based summary of rule based models to a tidy dataframe (where each row represents a rule) with related metrics such as support, confidence and lift. Rule based models from these packages are supported: 'C5.0', 'rpart' and 'Cubist'.
Author: Srikanth Komala Sheshachala [aut, cre],
Amith Kumar Ullur Raghavendra [aut]
Maintainer: Srikanth Komala Sheshachala <sri.teach@gmail.com>
Diff between tidyrules versions 0.1.3 dated 2020-01-30 and 0.1.5 dated 2020-06-04
DESCRIPTION | 10 +- MD5 | 41 ++++++----- NEWS.md | 8 ++ R/c5.R | 45 +++++++++++-- R/cubist.R | 34 +++++++++ R/rpart.R | 45 ++++++++++++- R/rule_translators.R |only R/varSpec.R | 2 build/vignette.rds |binary inst/doc/tidyrules_vignette.R | 15 +++- inst/doc/tidyrules_vignette.Rmd | 22 ++++-- inst/doc/tidyrules_vignette.html | 134 +++++++++++++++++++++++---------------- man/package_tidyrules.Rd | 1 man/ruleRToPython.Rd |only man/ruleRToSQL.Rd |only man/tidyRules.C5.0.Rd | 17 +++- man/tidyRules.cubist.Rd | 11 ++- man/tidyRules.rpart.Rd | 9 ++ man/varSpec.Rd | 2 tests/testthat/test-c5.R | 10 ++ tests/testthat/test-cubist.R | 2 tests/testthat/test-rpart.R | 2 vignettes/tidyrules_vignette.Rmd | 22 ++++-- 23 files changed, 320 insertions(+), 112 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, and ANOVA. Some packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.1.3 dated 2020-05-02 and 0.1.4 dated 2020-06-04
sasLM-0.1.3/sasLM/inst/doc/Validation-Report-GLM-2005022010.pdf |only sasLM-0.1.4/sasLM/DESCRIPTION | 8 ++-- sasLM-0.1.4/sasLM/MD5 | 20 +++++----- sasLM-0.1.4/sasLM/R/REG.R | 8 +++- sasLM-0.1.4/sasLM/R/cSS.R | 7 ++- sasLM-0.1.4/sasLM/R/e3.R | 18 +++++---- sasLM-0.1.4/sasLM/inst/NEWS.Rd | 8 ++++ sasLM-0.1.4/sasLM/inst/doc/Validation-Report-GLM-2006042258.pdf |only sasLM-0.1.4/sasLM/inst/doc/sasLM-manual.pdf |binary sasLM-0.1.4/sasLM/man/REG.Rd | 10 ++++- sasLM-0.1.4/sasLM/man/cSS.Rd | 4 +- sasLM-0.1.4/sasLM/man/sasLM-package.Rd | 2 - 12 files changed, 54 insertions(+), 31 deletions(-)
More information about spatstat.sparse at CRAN
Permanent link
More information about krippendorffsalpha at CRAN
Permanent link
Title: Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Description: Fast functions for effective sample size, weighted multivariate mean and variance computation,
and weight diagnostic plot for generic importance sampling type results.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between diagis versions 0.1.4 dated 2020-05-24 and 0.1.5 dated 2020-06-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 5 +++++ R/means.R | 12 ++++++------ R/ses.R | 4 ++-- R/vars.R | 12 ++++++------ inst/doc/diagis.pdf |binary 7 files changed, 29 insertions(+), 24 deletions(-)
Title: Collapses Levels, Computes Information Value and WoE
Description: Contains functions to help in selecting and exploring features ( or variables ) in binary classification problems.
Provides functions to compute and display information value and weight of evidence (WoE) of the variables , and to convert numeric variables to categorical variables by binning.
Functions are also provided to determine which levels ( or categories ) of a categorical variable can be collapsed (or combined ) based on their response rates.
The functions provided only work for binary classification problems.
Author: Krishanu Mukherjee
Maintainer: Krishanu Mukherjee <toton1181@gmail.com>
Diff between CollapseLevels versions 0.2.0 dated 2017-12-04 and 0.3.0 dated 2020-06-04
DESCRIPTION | 18 MD5 | 42 +- NAMESPACE | 20 - R/IVCalc.R | 6 R/IVCalc2.R | 6 R/displayIV.R | 6 R/displayResponseRatebyLevels.R | 7 R/displayWOE.R | 6 R/levelsCollapser.R | 8 R/numericToCategorical.R | 8 build/vignette.rds |binary inst/doc/CollapseLevels.R | 16 inst/doc/CollapseLevels.Rmd | 6 inst/doc/CollapseLevels.html | 709 ++++++++++++++++++++++++------------- man/IVCalc.Rd | 86 ++-- man/IVCalc2.Rd | 84 ++-- man/displayIV.Rd | 66 +-- man/displayResponseRatebyLevels.Rd | 71 +-- man/displayWOE.Rd | 64 +-- man/levelsCollapser.Rd | 88 ++-- man/numericToCategorical.Rd | 119 +++--- vignettes/CollapseLevels.Rmd | 6 22 files changed, 843 insertions(+), 599 deletions(-)
More information about CollapseLevels at CRAN
Permanent link
Title: 'R Markdown' Format for Scientific and Technical Writing
Description: Scientific and technical article format for the web. 'Distill' articles
feature attractive, reader-friendly typography, flexible layout options
for visualizations, and full support for footnotes and citations.
Author: JJ Allaire [aut, cre],
Rich Iannone [aut],
Yihui Xie [aut],
RStudio, Inc. [cph],
Google LLC [ctb, cph] (https://distill.pub/guide/),
Nick Williams [ctb, cph] (https://wicky.nillia.ms/headroom.js/),
Denis Demchenko [ctb, cph] (https://github.com/lancedikson/bowser),
The Polymer Authors [ctb, cph]
(https://www.webcomponents.org/polyfills/),
Gábor Csárdi [ctb, cph] (whoami),
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between distill versions 0.7 dated 2019-05-03 and 0.8 dated 2020-06-04
DESCRIPTION | 17 - MD5 | 32 +- NEWS.md | 13 - R/appendices.R | 129 ++++++++++ R/collections.R | 42 ++- R/listing.R | 33 ++ R/metadata.R | 76 +++++ R/navigation.R | 9 R/rstudio.R | 2 R/sitemap.R | 98 ++++++- R/utils.R | 9 inst/rmarkdown/templates/distill_article/resources/distill.html | 10 man/create_post.Rd | 10 man/distill_article.Rd | 40 ++- man/distill_website.Rd | 2 man/import_post.Rd | 12 man/publish_website.Rd | 14 - 17 files changed, 466 insertions(+), 82 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for
temporal data in an data- and model-oriented format. The 'tsibble'
provides tools to easily manipulate and analyse temporal data, such as
filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.8.6 dated 2020-01-31 and 0.9.0 dated 2020-06-04
tsibble-0.8.6/tsibble/R/bind.R |only tsibble-0.8.6/tsibble/R/dplyr-groups.R |only tsibble-0.8.6/tsibble/R/dplyr-join.R |only tsibble-0.8.6/tsibble/R/period.R |only tsibble-0.8.6/tsibble/R/slide.R |only tsibble-0.8.6/tsibble/R/stretch.R |only tsibble-0.8.6/tsibble/R/tile.R |only tsibble-0.8.6/tsibble/R/type-sum.R |only tsibble-0.8.6/tsibble/inst/doc/window.R |only tsibble-0.8.6/tsibble/inst/doc/window.Rmd |only tsibble-0.8.6/tsibble/inst/doc/window.html |only tsibble-0.8.6/tsibble/man/new_interval.Rd |only tsibble-0.8.6/tsibble/man/period.Rd |only tsibble-0.8.6/tsibble/man/time_unit.Rd |only tsibble-0.8.6/tsibble/man/units_since.Rd |only tsibble-0.8.6/tsibble/tests/testthat/test-groups.R |only tsibble-0.8.6/tsibble/tests/testthat/test-key.R |only tsibble-0.8.6/tsibble/tests/testthat/test-misc.R |only tsibble-0.8.6/tsibble/tests/testthat/test-period.R |only tsibble-0.8.6/tsibble/tests/testthat/test-pillar.R |only tsibble-0.8.6/tsibble/tests/testthat/test-slide.R |only tsibble-0.8.6/tsibble/tests/testthat/test-stretch.R |only tsibble-0.8.6/tsibble/tests/testthat/test-tile.R |only tsibble-0.8.6/tsibble/vignettes/references.bib |only tsibble-0.8.6/tsibble/vignettes/window.Rmd |only tsibble-0.9.0/tsibble/DESCRIPTION | 27 - tsibble-0.9.0/tsibble/MD5 | 222 +++++----- tsibble-0.9.0/tsibble/NAMESPACE | 188 ++++++--- tsibble-0.9.0/tsibble/NEWS.md | 35 + tsibble-0.9.0/tsibble/R/as-tsibble.R | 95 ++-- tsibble-0.9.0/tsibble/R/deprec-slide.R |only tsibble-0.9.0/tsibble/R/deprec-stretch.R |only tsibble-0.9.0/tsibble/R/deprec-tile.R |only tsibble-0.9.0/tsibble/R/deprecated.R | 82 ++- tsibble-0.9.0/tsibble/R/dplyr-verbs.R | 311 +++++++-------- tsibble-0.9.0/tsibble/R/error.R | 41 - tsibble-0.9.0/tsibble/R/filter-index.R | 22 - tsibble-0.9.0/tsibble/R/format.R |only tsibble-0.9.0/tsibble/R/gaps.R | 78 ++- tsibble-0.9.0/tsibble/R/holiday.R | 36 - tsibble-0.9.0/tsibble/R/index-by.R | 6 tsibble-0.9.0/tsibble/R/interval.R | 213 ++++------ tsibble-0.9.0/tsibble/R/new-data.R | 32 + tsibble-0.9.0/tsibble/R/scales.R |only tsibble-0.9.0/tsibble/R/subset.R | 115 ++--- tsibble-0.9.0/tsibble/R/tidyr-verbs.R | 96 +++- tsibble-0.9.0/tsibble/R/time-wise.R | 16 tsibble-0.9.0/tsibble/R/ts2tsibble.R | 46 +- tsibble-0.9.0/tsibble/R/tsibble-meta.R | 2 tsibble-0.9.0/tsibble/R/tsibble-package.R | 10 tsibble-0.9.0/tsibble/R/tsibble2ts.R | 63 +-- tsibble-0.9.0/tsibble/R/update.R | 146 ++----- tsibble-0.9.0/tsibble/R/utils.R | 4 tsibble-0.9.0/tsibble/R/vctrs-tsibble.R |only tsibble-0.9.0/tsibble/R/yearmonth.R |only tsibble-0.9.0/tsibble/R/yearquarter.R |only tsibble-0.9.0/tsibble/R/yearweek.R |only tsibble-0.9.0/tsibble/R/zzz.R | 66 --- tsibble-0.9.0/tsibble/README.md | 63 --- tsibble-0.9.0/tsibble/build/tsibble.pdf |binary tsibble-0.9.0/tsibble/build/vignette.rds |binary tsibble-0.9.0/tsibble/data/pedestrian.rda |binary tsibble-0.9.0/tsibble/data/tourism.rda |binary tsibble-0.9.0/tsibble/inst/CITATION | 1 tsibble-0.9.0/tsibble/inst/WORDLIST | 6 tsibble-0.9.0/tsibble/inst/doc/faq.Rmd | 2 tsibble-0.9.0/tsibble/inst/doc/faq.html | 110 ++--- tsibble-0.9.0/tsibble/inst/doc/implicit-na.html | 90 ++-- tsibble-0.9.0/tsibble/inst/doc/intro-tsibble.Rmd | 3 tsibble-0.9.0/tsibble/inst/doc/intro-tsibble.html | 101 ++-- tsibble-0.9.0/tsibble/man/as-tibble.Rd | 14 tsibble-0.9.0/tsibble/man/as-tsibble.Rd | 95 +++- tsibble-0.9.0/tsibble/man/as.ts.tbl_ts.Rd | 4 tsibble-0.9.0/tsibble/man/count_gaps.Rd | 10 tsibble-0.9.0/tsibble/man/default_time_units.Rd |only tsibble-0.9.0/tsibble/man/deprecated.Rd | 24 - tsibble-0.9.0/tsibble/man/difference.Rd | 10 tsibble-0.9.0/tsibble/man/figures/tsibble.png |only tsibble-0.9.0/tsibble/man/figures/tsibble.svg |only tsibble-0.9.0/tsibble/man/fill_gaps.Rd | 13 tsibble-0.9.0/tsibble/man/filter_index.Rd | 7 tsibble-0.9.0/tsibble/man/future-slide.Rd | 5 tsibble-0.9.0/tsibble/man/future-stretch.Rd | 8 tsibble-0.9.0/tsibble/man/future-tile.Rd | 5 tsibble-0.9.0/tsibble/man/guess_frequency.Rd | 4 tsibble-0.9.0/tsibble/man/has_gaps.Rd | 12 tsibble-0.9.0/tsibble/man/new-data.Rd | 11 tsibble-0.9.0/tsibble/man/new-interval.Rd |only tsibble-0.9.0/tsibble/man/partial-slider.Rd | 3 tsibble-0.9.0/tsibble/man/pedestrian.Rd | 6 tsibble-0.9.0/tsibble/man/scan_gaps.Rd | 10 tsibble-0.9.0/tsibble/man/slide.Rd | 16 tsibble-0.9.0/tsibble/man/slide2.Rd | 10 tsibble-0.9.0/tsibble/man/slide_tsibble.Rd | 5 tsibble-0.9.0/tsibble/man/slider.Rd | 3 tsibble-0.9.0/tsibble/man/stretch.Rd | 29 - tsibble-0.9.0/tsibble/man/stretch2.Rd | 10 tsibble-0.9.0/tsibble/man/stretch_tsibble.Rd | 5 tsibble-0.9.0/tsibble/man/stretcher.Rd | 3 tsibble-0.9.0/tsibble/man/tile.Rd | 10 tsibble-0.9.0/tsibble/man/tile2.Rd | 15 tsibble-0.9.0/tsibble/man/tile_tsibble.Rd | 5 tsibble-0.9.0/tsibble/man/tiler.Rd | 3 tsibble-0.9.0/tsibble/man/tourism.Rd | 6 tsibble-0.9.0/tsibble/man/tsibble-scales.Rd |only tsibble-0.9.0/tsibble/man/tsibble-tidyverse.Rd | 92 +--- tsibble-0.9.0/tsibble/man/tsibble-vctrs.Rd |only tsibble-0.9.0/tsibble/man/unnest_tsibble.Rd | 2 tsibble-0.9.0/tsibble/man/year-month.Rd |only tsibble-0.9.0/tsibble/man/year-quarter.Rd |only tsibble-0.9.0/tsibble/man/year-week.Rd |only tsibble-0.9.0/tsibble/tests/testthat/test-append.R | 9 tsibble-0.9.0/tsibble/tests/testthat/test-bind.R | 27 - tsibble-0.9.0/tsibble/tests/testthat/test-deprecated.R | 21 - tsibble-0.9.0/tsibble/tests/testthat/test-dplyr.R | 50 +- tsibble-0.9.0/tsibble/tests/testthat/test-empty.R | 4 tsibble-0.9.0/tsibble/tests/testthat/test-filter-index.R | 11 tsibble-0.9.0/tsibble/tests/testthat/test-gaps.R | 37 + tsibble-0.9.0/tsibble/tests/testthat/test-ggplot2.R | 2 tsibble-0.9.0/tsibble/tests/testthat/test-holiday.R | 2 tsibble-0.9.0/tsibble/tests/testthat/test-indexby.R | 10 tsibble-0.9.0/tsibble/tests/testthat/test-interval.R |only tsibble-0.9.0/tsibble/tests/testthat/test-join.R | 4 tsibble-0.9.0/tsibble/tests/testthat/test-print.R |only tsibble-0.9.0/tsibble/tests/testthat/test-roll-tsibble.R | 2 tsibble-0.9.0/tsibble/tests/testthat/test-subset.R | 6 tsibble-0.9.0/tsibble/tests/testthat/test-tidyr.R | 56 +- tsibble-0.9.0/tsibble/tests/testthat/test-timewise.R | 2 tsibble-0.9.0/tsibble/tests/testthat/test-ts2tsibble.R | 2 tsibble-0.9.0/tsibble/tests/testthat/test-tsibble.R | 29 - tsibble-0.9.0/tsibble/tests/testthat/test-tsibble2ts.R | 13 tsibble-0.9.0/tsibble/tests/testthat/test-yearmonth.R |only tsibble-0.9.0/tsibble/tests/testthat/test-yearquarter.R |only tsibble-0.9.0/tsibble/tests/testthat/test-yearweek.R |only tsibble-0.9.0/tsibble/vignettes/faq.Rmd | 2 tsibble-0.9.0/tsibble/vignettes/intro-tsibble.Rmd | 3 136 files changed, 1614 insertions(+), 1461 deletions(-)
Title: Find, Download and Process Sentinel-2 Data
Description: Functions to download Sentinel-2 optical images
and perform preliminary processing operations.
'sen2r' provides the instruments required to easily perform
(and eventually automate) the steps necessary to build a complete
Sentinel-2 processing chain.
A Graphical User Interface to facilitate data processing is also provided.
For additional documentation refer to the following article:
Ranghetti et al. (2020) <doi:10.1016/j.cageo.2020.104473>.
Author: Luigi Ranghetti [aut, cre] (<https://orcid.org/0000-0001-6207-5188>),
Lorenzo Busetto [aut] (<https://orcid.org/0000-0001-9634-6038>)
Maintainer: Luigi Ranghetti <luigi@ranghetti.info>
Diff between sen2r versions 1.3.5 dated 2020-06-01 and 1.3.6 dated 2020-06-04
DESCRIPTION | 8 +++++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/check_sen2r_deps.R | 4 ++-- R/init_python.R | 2 +- inst/WORDLIST | 2 +- tests/testthat/test-load_binpaths.R | 2 +- 7 files changed, 22 insertions(+), 14 deletions(-)
Title: Processing Acoustic Startle Experimental Data
Description: Used for processing data obtained from behaviour experiments studying
acoustic startle response, a reflex to a loud sound, modulated by several
brain regions. The input data is generated with PASTA (Platform for Acoustic
STArtle), a DIY device made from a kitchen scale that measures the twitch of
an animal standing on the device and records it as time-series data. The
function of this package is to import all data, process it in accordance
with default or custom metadata describing the experiment protocol, calculate
measurements and visualize the results. The PASTA solution and this package
are described in Virag et al. (2020) <doi:10.1101/2020.04.10.035766>.
Author: Ivan Kodvanj [aut, cre] (<https://orcid.org/0000-0002-1359-3701>),
Davor Virag [aut] (<https://orcid.org/0000-0003-3574-7107>),
Jan Homolak [aut] (<https://orcid.org/0000-0003-1508-3243>)
Maintainer: Ivan Kodvanj <ikodvanj@gmail.com>
Diff between ratPASTA versions 0.1.0 dated 2020-04-28 and 0.1.1 dated 2020-06-04
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md |only README.md | 10 +++++++++- inst/doc/ratPASTA.html | 6 +++--- tests/testthat/results1.rds |binary tests/testthat/test-loadstartledata.R | 2 +- 7 files changed, 22 insertions(+), 13 deletions(-)
Title: Non-Negative Tensor Decomposition
Description: Some functions for performing non-negative matrix factorization, non-negative CANDECOMP/PARAFAC (CP) decomposition, non-negative Tucker decomposition, and generating toy model data. See Andrzej Cichock et al (2009) <doi:10.1002/9780470747278> and the reference section of GitHub README.md <https://github.com/rikenbit/nnTensor>, for details of the methods.
Author: Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between nnTensor versions 1.0.4 dated 2020-04-20 and 1.0.5 dated 2020-06-04
DESCRIPTION | 6 MD5 | 56 +++-- R/NMF.R | 121 ++++++++--- R/NTD.R | 331 ++++++++++++++++++++----------- R/NTF.R | 202 +++++++++++++----- R/jNMF.R | 180 +++++++++++++--- R/siNMF.R | 135 ++++++++++-- build/partial.rdb |binary inst/NEWS | 7 man/NMF.Rd | 117 ++++++---- man/NTD.Rd | 73 +++++- man/NTF.Rd | 52 +++- man/jNMF.Rd | 81 +++++-- man/siNMF.Rd | 72 +++++- tests/testthat.R | 27 ++ tests/testthat/test_GabrielNMF.R |only tests/testthat/test_NMF.R | 22 +- tests/testthat/test_NMF_rankestimation.R | 2 tests/testthat/test_NTD.R | 94 ++++---- tests/testthat/test_NTF.R | 52 ++-- tests/testthat/test_fix_NMF.R |only tests/testthat/test_fix_NTD.R |only tests/testthat/test_fix_NTF.R |only tests/testthat/test_fix_jNMF.R |only tests/testthat/test_fix_siNMF.R |only tests/testthat/test_init_NMF.R |only tests/testthat/test_init_NTD.R |only tests/testthat/test_init_NTF.R |only tests/testthat/test_init_jNMF.R |only tests/testthat/test_init_siNMF.R |only tests/testthat/test_jNMF.R | 8 tests/testthat/test_mask_NMF.R |only tests/testthat/test_mask_NTD.R |only tests/testthat/test_mask_NTF.R |only tests/testthat/test_mask_jNMF.R |only tests/testthat/test_mask_siNMF.R |only tests/testthat/test_siNMF.R | 8 37 files changed, 1180 insertions(+), 466 deletions(-)
Title: Index Numbers in Social Sciences
Description: We provide an R tool for teaching in Social Sciences. It allows the computation of index numbers. It is a measure of the evolution of a fixed magnitude for only a product of for several products. It is very useful in Social Sciences. Among others, we obtain simple index numbers (in chain or in serie), index numbers for not only a product or weighted index numbers as the Laspeyres index (Laspeyres, 1864), the Paasche index (Paasche, 1874) or the Fisher index (Lapedes, 1978).
Author: Alejandro Saavedra-Nieves, Paula Saavedra-Nieves
Maintainer: Alejandro Saavedra-Nieves <alejandro.saavedra.nieves@gmail.com>
Diff between IndexNumber versions 1.1 dated 2020-03-02 and 1.2 dated 2020-06-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: A Fast Way to Calculate the p-Value of One or Multiple
Log-Rank-Tests
Description: A very fast Log-Rank-Test implementation that is several orders of magnitude faster than the implementation in the 'survival' package.
Log-Rank-Tests can be computed individually or concurrently using threading.
Author: Andreas Stelzer, Manuela Lautizi, Tim Kacprowski, Research group of Computational Systems Medicine, Chair of Experimental Bioinformatics, TU Munich
Maintainer: Tim Kacprowski <tim.kacprowski@wzw.tum.de>
Diff between fastlogranktest versions 0.1.1 dated 2020-02-02 and 0.2.1 dated 2020-06-04
DESCRIPTION | 17 +- MD5 | 25 ++-- NAMESPACE | 12 - R/RcppExports.R | 30 ++-- R/logrank_test.R | 100 ++++++++-------- man/logrank_test.Rd | 64 +++++----- man/multi_logrank_test.Rd | 85 +++++++------ src/RcppExports.cpp | 27 ++-- src/logrank_r.cpp | 34 +++-- tests/testthat.R | 8 - tests/testthat/test-benchmarks.R | 90 +++++++------- tests/testthat/test-logrank_example.R | 16 +- tests/testthat/test-multi_logrank_example.R | 22 +-- tests/testthat/test-multi_logrank_example_multithread.R |only 14 files changed, 276 insertions(+), 254 deletions(-)
More information about fastlogranktest at CRAN
Permanent link
Title: Basic Biological Sequence Handling
Description: Basic functions for microbial sequence data analysis. The idea is to use generic R data structures as much as possible, making R data wrangling possible also for sequence data.
Author: Lars Snipen, Kristian Hovde Liland
Maintainer: Lars Snipen <lars.snipen@nmbu.no>
Diff between microseq versions 2.1 dated 2020-05-29 and 2.1.1 dated 2020-06-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/fasta.R | 2 +- inst/doc/vignette.pdf |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable and performant 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] (Bundled PCRE2 code),
Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code),
University of Cambridge [cph] (Bundled PCRE2 code),
Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with
PCRE2)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.11 dated 2020-05-31 and 0.12 dated 2020-06-04
ChangeLog | 9 +++- DESCRIPTION | 7 ++- MD5 | 18 ++++----- README.md | 2 - configure | 86 +++++++++++++++++++++++++++++++-------------- configure.ac | 49 +++++++++++++++++++++---- inst/doc/vignette.html | 2 - inst/include/sf_internal.h | 5 ++ src/Makevars.in | 3 + src/sf_altrep.h | 6 +-- 10 files changed, 133 insertions(+), 54 deletions(-)
Title: Get 'Silhouettes' of 'Organisms' from 'Phylopic'
Description: Work with 'Phylopic' web service (<http://phylopic.org/api/>)
to get 'silhouette' images of 'organisms', search names, and more.
Includes functions for adding 'silhouettes' to both base plots and
ggplot2 plots.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
David Miller [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rphylopic versions 0.2.0 dated 2018-11-19 and 0.3.0 dated 2020-06-04
rphylopic-0.2.0/rphylopic/inst/assets |only rphylopic-0.3.0/rphylopic/DESCRIPTION | 11 rphylopic-0.3.0/rphylopic/LICENSE | 2 rphylopic-0.3.0/rphylopic/MD5 | 64 +-- rphylopic-0.3.0/rphylopic/NEWS.md | 16 rphylopic-0.3.0/rphylopic/R/add_phylopic_base.r | 41 +- rphylopic-0.3.0/rphylopic/R/image.R | 4 rphylopic-0.3.0/rphylopic/R/name_sets.R | 27 - rphylopic-0.3.0/rphylopic/R/rphylopic-package.R | 9 rphylopic-0.3.0/rphylopic/README.md | 31 - rphylopic-0.3.0/rphylopic/build |only rphylopic-0.3.0/rphylopic/inst/doc |only rphylopic-0.3.0/rphylopic/man/add_phylopic.Rd | 3 rphylopic-0.3.0/rphylopic/man/add_phylopic_base.Rd | 32 + rphylopic-0.3.0/rphylopic/man/figures |only rphylopic-0.3.0/rphylopic/man/get_names.Rd | 10 rphylopic-0.3.0/rphylopic/man/image.Rd | 11 rphylopic-0.3.0/rphylopic/man/name.Rd | 21 - rphylopic-0.3.0/rphylopic/man/nameset.Rd | 23 - rphylopic-0.3.0/rphylopic/man/plot_phylopic_base-defunct.Rd |only rphylopic-0.3.0/rphylopic/man/search_images.Rd | 11 rphylopic-0.3.0/rphylopic/man/ubio.Rd | 2 rphylopic-0.3.0/rphylopic/tests/fixtures/get_names.yml | 196 ++++------ rphylopic-0.3.0/rphylopic/tests/fixtures/list_images.yml | 135 +++--- rphylopic-0.3.0/rphylopic/tests/fixtures/nameset_get.yml | 24 - rphylopic-0.3.0/rphylopic/tests/fixtures/nameset_taxonomy.yml | 148 +++---- rphylopic-0.3.0/rphylopic/tests/testthat/test-get_names.R | 2 rphylopic-0.3.0/rphylopic/tests/testthat/test-list_images.R | 2 rphylopic-0.3.0/rphylopic/tests/testthat/test-nameset.R | 4 rphylopic-0.3.0/rphylopic/vignettes |only 30 files changed, 454 insertions(+), 375 deletions(-)
More information about pathfindR.data at CRAN
Permanent link
More information about ArchaeoPhases.dataset at CRAN
Permanent link
Title: Time Series Forecasting Using Nearest Neighbors
Description: Allows to forecast time series using nearest neighbors regression
Francisco Martinez, Maria P. Frias, Maria D. Perez-Godoy and Antonio J.
Rivera (2017) <doi:10.1007/s10462-017-9593-z>. When the forecasting horizon
is higher than 1, two multi-step ahead forecasting strategies can be used.
The model built is autoregressive, that is, it is only based on the
observations of the time series. The nearest neighbors used in a prediction
can be consulted and plotted.
Author: Francisco Martinez [aut, cre]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between tsfknn versions 0.3.0 dated 2019-05-31 and 0.4.0 dated 2020-06-04
DESCRIPTION | 13 +-- MD5 | 48 +++++++------ NAMESPACE | 2 NEWS.md | 8 ++ R/RcppExports.R |only R/forecasting.R | 2 R/knn.R | 56 ++++++++------- R/plotting.R | 2 R/print_knnForecast.R | 12 +-- R/rolling_origin.R | 24 +++--- R/tsfknn.R | 4 + build/vignette.rds |binary inst/CITATION |only inst/doc/tsfknn.R | 32 ++++---- inst/doc/tsfknn.Rmd | 2 inst/doc/tsfknn.html | 126 +++++++++++++++++++---------------- man/autoplot.knnForecast.Rd | 5 - man/knn_examples.Rd | 2 man/knn_forecasting.Rd | 10 ++ man/plot.knnForecastRO.Rd | 2 man/rolling_origin.Rd | 4 - man/tsfknn.Rd | 1 src |only tests/testthat/test_build_examples.R | 2 tests/testthat/test_regression.R | 2 vignettes/tsfknn.Rmd | 2 26 files changed, 199 insertions(+), 162 deletions(-)
Title: Font Files for the 'showtext' Package
Description: Providing font files that can be used by the 'showtext' package.
Author: Yixuan Qiu and authors/contributors of the included fonts. See file
AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between showtextdb versions 2.0 dated 2017-09-11 and 3.0 dated 2020-06-04
DESCRIPTION | 12 +++++------ MD5 | 19 ++++++++++------- NAMESPACE | 2 - R/font_install.R | 31 ++++++++++++++++++----------- R/google_fonts.R |only R/load_showtext_fonts.R | 48 +++++++++++++++++++++++++++++++-------------- R/source_han.R | 2 - inst/NEWS.Rd |only man/font_install.Rd | 10 ++++----- man/google_fonts.Rd |only man/load_showtext_fonts.Rd | 2 - man/source_han.Rd | 2 - 12 files changed, 80 insertions(+), 48 deletions(-)
Title: Infrastructure for Manipulation Polynomial Matrices
Description: Implementation of class "polyMatrix" for storing a matrix of polynomials and implements
basic matrix operations; including a determinant and characteristic polynomial.
It is based on the package 'polynom' and uses a lot of its methods to implement matrix operations.
This package includes 3 methods of triangularization of polynomial matrices:
Extended Euclidean algorithm which is most classical but numerically unstable;
Sylvester algorithm based on LQ decomposition;
Interpolation algorithm is based on LQ decomposition and Newton interpolation.
Both methods are described in
D. Henrion & M. Sebek, Reliable numerical methods for polynomial matrix triangularization,
IEEE Transactions on Automatic Control (Volume 44, Issue 3, Mar 1999, Pages 497-508) <doi:10.1109/9.751344>
and in
Salah Labhalla, Henri Lombardi & Roger Marlin,
Algorithmes de calcule de la reduction de Hermite d'une matrice a coefficients polynomeaux,
Theoretical Computer Science (Volume 161, Issue 1-2, July 1996, Pages 69-92) <doi:10.1016/0304-3975(95)00090-9>.
Author: Tamas Prohle [aut],
Peter Prohle [aut],
Nikolai Ryzhkov [aut, cre],
Ildiko Laszlo [aut] (<https://orcid.org/0000-0003-2324-8183>),
Ulas Onat Alakent [ctb]
Maintainer: Nikolai Ryzhkov <namezys@gmail.com>
Diff between polyMatrix versions 0.2.5 dated 2020-02-03 and 0.3.1 dated 2020-06-04
polyMatrix-0.2.5/polyMatrix/man/dim.Rd |only polyMatrix-0.2.5/polyMatrix/man/t.Rd |only polyMatrix-0.2.5/polyMatrix/man/triang_euclidean.Rd |only polyMatrix-0.3.1/polyMatrix/DESCRIPTION | 12 ++++--- polyMatrix-0.3.1/polyMatrix/MD5 | 27 ++++++++-------- polyMatrix-0.3.1/polyMatrix/NAMESPACE | 3 + polyMatrix-0.3.1/polyMatrix/R/dim.R | 17 +++++++++- polyMatrix-0.3.1/polyMatrix/R/pMconvert.R | 10 ++--- polyMatrix-0.3.1/polyMatrix/R/trans.R | 23 ++++++++++++- polyMatrix-0.3.1/polyMatrix/R/triang_euclidean.R | 16 ++++++++- polyMatrix-0.3.1/polyMatrix/R/triang_interpolation.R |only polyMatrix-0.3.1/polyMatrix/R/triang_sylvester.R | 11 +----- polyMatrix-0.3.1/polyMatrix/R/triang_utils.R |only polyMatrix-0.3.1/polyMatrix/build/partial.rdb |binary polyMatrix-0.3.1/polyMatrix/man/dim.polyMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/pMstr.Rd | 20 +++++------ polyMatrix-0.3.1/polyMatrix/man/t.polyMatrix.Rd |only polyMatrix-0.3.1/polyMatrix/man/triang_Euclidean.Rd |only polyMatrix-0.3.1/polyMatrix/man/triang_Interpolation.Rd |only 19 files changed, 94 insertions(+), 45 deletions(-)
Title: General Resampling Infrastructure
Description: Classes and functions to create and summarize different types of resampling objects (e.g. bootstrap, cross-validation).
Author: Max Kuhn [aut, cre],
Fanny Chow [aut],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between rsample versions 0.0.6 dated 2020-03-31 and 0.0.7 dated 2020-06-04
rsample-0.0.6/rsample/R/aaa.R |only rsample-0.0.6/rsample/R/dplyr-compat.R |only rsample-0.0.6/rsample/data |only rsample-0.0.6/rsample/tests/testthat/test_dplyr.R |only rsample-0.0.7/rsample/DESCRIPTION | 16 rsample-0.0.7/rsample/MD5 | 113 ++--- rsample-0.0.7/rsample/NAMESPACE | 112 ++++- rsample-0.0.7/rsample/NEWS.md | 10 rsample-0.0.7/rsample/R/boot.R | 7 rsample-0.0.7/rsample/R/bootci.R | 2 rsample-0.0.7/rsample/R/compat-dplyr-old.R |only rsample-0.0.7/rsample/R/compat-dplyr.R |only rsample-0.0.7/rsample/R/compat-vctrs-helpers.R |only rsample-0.0.7/rsample/R/compat-vctrs.R |only rsample-0.0.7/rsample/R/data.R | 34 - rsample-0.0.7/rsample/R/gather.R | 1 rsample-0.0.7/rsample/R/groups.R | 7 rsample-0.0.7/rsample/R/initial_split.R | 7 rsample-0.0.7/rsample/R/lables.R | 11 rsample-0.0.7/rsample/R/make_strata.R | 2 rsample-0.0.7/rsample/R/mc.R | 8 rsample-0.0.7/rsample/R/misc.R | 73 --- rsample-0.0.7/rsample/R/nest.R | 5 rsample-0.0.7/rsample/R/rolling_origin.R | 2 rsample-0.0.7/rsample/R/rset.R |only rsample-0.0.7/rsample/R/rsplit.R | 2 rsample-0.0.7/rsample/R/validation_split.R | 4 rsample-0.0.7/rsample/R/vfold.R | 10 rsample-0.0.7/rsample/R/zzz.R |only rsample-0.0.7/rsample/build/vignette.rds |binary rsample-0.0.7/rsample/inst/doc/Basics.html | 2 rsample-0.0.7/rsample/inst/doc/Working_with_rsets.R | 4 rsample-0.0.7/rsample/inst/doc/Working_with_rsets.Rmd | 9 rsample-0.0.7/rsample/inst/doc/Working_with_rsets.html | 16 rsample-0.0.7/rsample/man/attrition.Rd | 14 rsample-0.0.7/rsample/man/bootstraps.Rd | 3 rsample-0.0.7/rsample/man/drinks.Rd | 14 rsample-0.0.7/rsample/man/initial_split.Rd | 7 rsample-0.0.7/rsample/man/int_pctl.Rd | 2 rsample-0.0.7/rsample/man/make_strata.Rd | 2 rsample-0.0.7/rsample/man/mc_cv.Rd | 4 rsample-0.0.7/rsample/man/new_rset.Rd | 2 rsample-0.0.7/rsample/man/rolling_origin.Rd | 2 rsample-0.0.7/rsample/man/rsample-dplyr.Rd |only rsample-0.0.7/rsample/man/two_class_dat.Rd | 11 rsample-0.0.7/rsample/man/validation_split.Rd | 2 rsample-0.0.7/rsample/man/vfold_cv.Rd | 4 rsample-0.0.7/rsample/tests/testthat/helper-s3.R |only rsample-0.0.7/rsample/tests/testthat/print_test_output |only rsample-0.0.7/rsample/tests/testthat/test-compat-dplyr-old.R |only rsample-0.0.7/rsample/tests/testthat/test-compat-dplyr.R |only rsample-0.0.7/rsample/tests/testthat/test-compat-vctrs.R |only rsample-0.0.7/rsample/tests/testthat/test-print-groups.txt | 4 rsample-0.0.7/rsample/tests/testthat/test-rset.R |only rsample-0.0.7/rsample/tests/testthat/test_bootci.R | 2 rsample-0.0.7/rsample/tests/testthat/test_group.R | 2 rsample-0.0.7/rsample/tests/testthat/test_nesting.R | 67 +++ rsample-0.0.7/rsample/tests/testthat/test_rset.R | 20 rsample-0.0.7/rsample/tests/testthat/test_rsplit.R | 12 rsample-0.0.7/rsample/tests/testthat/test_strata.R | 2 rsample-0.0.7/rsample/vignettes/Applications/Keras.Rmd | 189 -------- rsample-0.0.7/rsample/vignettes/Applications/Nested_Resampling.Rmd | 217 ---------- rsample-0.0.7/rsample/vignettes/Applications/Time_Series.Rmd | 174 -------- rsample-0.0.7/rsample/vignettes/Working_with_rsets.Rmd | 9 64 files changed, 349 insertions(+), 873 deletions(-)
Title: Testing Generalized Linear Hypotheses for Generalized Linear
Model Parameters by Profile Deviance
Description: Calculation of signed root deviance profiles for linear combinations of parameters in a generalized linear model. Multiple tests and simultaneous confidence intervals are provided.
Author: Daniel Gerhard [aut, cre]
Maintainer: Daniel Gerhard <00gerhard@gmail.com>
Diff between mcprofile versions 0.2-3 dated 2016-10-09 and 1.0-0 dated 2020-06-04
mcprofile-0.2-3/mcprofile/README.md |only mcprofile-0.2-3/mcprofile/man/CItrans.Rd |only mcprofile-0.2-3/mcprofile/man/orglm.Rd |only mcprofile-1.0-0/mcprofile/DESCRIPTION | 15 ++- mcprofile-1.0-0/mcprofile/MD5 | 53 ++++++----- mcprofile-1.0-0/mcprofile/NAMESPACE | 2 mcprofile-1.0-0/mcprofile/R/confint.mcprofile.R | 14 +++ mcprofile-1.0-0/mcprofile/R/data.R |only mcprofile-1.0-0/mcprofile/R/exp.mcpCI.R |only mcprofile-1.0-0/mcprofile/R/expit.mcpCI.R |only mcprofile-1.0-0/mcprofile/R/hoa.R | 46 ++++++++++ mcprofile-1.0-0/mcprofile/R/mcprofile.R | 55 +++++++++++- mcprofile-1.0-0/mcprofile/R/mcprofileControl.R |only mcprofile-1.0-0/mcprofile/R/methods.R | 29 ------ mcprofile-1.0-0/mcprofile/R/orglm.R | 59 ++++++++++++- mcprofile-1.0-0/mcprofile/R/summary.mcprofile.R | 16 +++ mcprofile-1.0-0/mcprofile/R/wald.R |only mcprofile-1.0-0/mcprofile/build/vignette.rds |binary mcprofile-1.0-0/mcprofile/inst/CITATION | 9 +- mcprofile-1.0-0/mcprofile/inst/doc/mcprofile.R | 40 ++++---- mcprofile-1.0-0/mcprofile/inst/doc/mcprofile.html | 94 ++++++++++----------- mcprofile-1.0-0/mcprofile/man/aphidlight.Rd | 30 +++--- mcprofile-1.0-0/mcprofile/man/confint.mcprofile.Rd | 43 +++++---- mcprofile-1.0-0/mcprofile/man/cta.Rd | 26 +++-- mcprofile-1.0-0/mcprofile/man/exp.mcpCI.Rd |only mcprofile-1.0-0/mcprofile/man/expit.mcpCI.Rd |only mcprofile-1.0-0/mcprofile/man/hoa.Rd | 39 ++++---- mcprofile-1.0-0/mcprofile/man/mcprofile.Rd | 75 +++++++--------- mcprofile-1.0-0/mcprofile/man/mcprofileControl.Rd | 25 +++-- mcprofile-1.0-0/mcprofile/man/orglm.fit.Rd |only mcprofile-1.0-0/mcprofile/man/summary.mcprofile.Rd | 38 ++++---- mcprofile-1.0-0/mcprofile/man/toxinLD.Rd | 33 +++---- mcprofile-1.0-0/mcprofile/man/wald.Rd | 35 ++++--- 33 files changed, 478 insertions(+), 298 deletions(-)
Title: Generalized Random Forests
Description: A pluggable package for forest-based statistical estimation and inference.
GRF currently provides methods for non-parametric least-squares regression,
quantile regression, survival regression and treatment effect estimation (optionally using instrumental
variables), with support for missing values.
Author: Julie Tibshirani [aut, cre],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [ctb],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Julie Tibshirani <jtibs@cs.stanford.edu>
Diff between grf versions 1.1.0 dated 2020-03-12 and 1.2.0 dated 2020-06-04
DESCRIPTION | 10 MD5 | 174 +++++----- NAMESPACE | 2 R/RcppExports.R | 36 +- R/analysis_tools.R | 14 R/average_late.R | 2 R/average_partial_effect.R | 49 ++ R/average_treatment_effect.R | 8 R/boosted_regression_forest.R | 4 R/causal_forest.R | 61 +-- R/custom_forest.R | 10 R/forest_summary.R | 20 - R/input_utilities.R | 42 +- R/instrumental_forest.R | 8 R/local_linear_forest.R | 49 +- R/merge_forests.R | 2 R/plot.R | 14 R/quantile_forest.R | 81 ++-- R/regression_forest.R | 47 +- R/survival_forest.R |only R/tune_causal_forest.R | 4 R/tune_instrumental_forest.R | 4 R/tune_local_linear_causal_forest.R | 27 - R/tune_local_linear_forest.R | 33 - R/tune_regression_forest.R | 4 R/tuning.R | 2 man/average_partial_effect.Rd | 13 man/average_treatment_effect.Rd | 4 man/best_linear_projection.Rd | 4 man/boosted_regression_forest.Rd | 2 man/causal_forest.Rd | 2 man/custom_forest.Rd | 2 man/get_sample_weights.Rd | 2 man/get_tree.Rd | 2 man/ll_regression_forest.Rd | 2 man/merge_forests.Rd | 2 man/plot.grf_tree.Rd | 12 man/predict.boosted_regression_forest.Rd | 2 man/predict.causal_forest.Rd | 2 man/predict.custom_forest.Rd | 2 man/predict.ll_regression_forest.Rd | 2 man/predict.quantile_forest.Rd | 13 man/predict.regression_forest.Rd | 2 man/predict.survival_forest.Rd |only man/quantile_forest.Rd | 5 man/regression_forest.Rd | 2 man/split_frequencies.Rd | 2 man/survival_forest.Rd |only man/test_calibration.Rd | 2 man/tune_causal_forest.Rd | 2 man/tune_forest.Rd | 2 man/tune_instrumental_forest.Rd | 2 man/tune_ll_causal_forest.Rd | 5 man/tune_ll_regression_forest.Rd | 5 man/tune_regression_forest.Rd | 2 man/variable_importance.Rd | 2 src/CausalForestBindings.cpp | 54 +-- src/CustomForestBindings.cpp | 1 src/InstrumentalForestBindings.cpp | 1 src/QuantileForestBindings.cpp | 14 src/RcppExports.cpp | 154 ++++++-- src/RegressionForestBindings.cpp | 28 - src/SurvivalForestBindings.cpp |only src/src/commons/Data.cpp | 71 ---- src/src/commons/Data.h | 40 -- src/src/commons/utility.cpp | 2 src/src/forest/ForestPredictors.cpp | 7 src/src/forest/ForestPredictors.h | 2 src/src/forest/ForestTrainers.cpp | 12 src/src/forest/ForestTrainers.h | 2 src/src/prediction/SurvivalPredictionStrategy.cpp |only src/src/prediction/SurvivalPredictionStrategy.h |only src/src/prediction/collector/DefaultPredictionCollector.cpp | 14 src/src/prediction/collector/DefaultPredictionCollector.h | 6 src/src/splitting/InstrumentalSplittingRule.cpp | 160 +-------- src/src/splitting/InstrumentalSplittingRule.h | 52 +- src/src/splitting/ProbabilitySplittingRule.cpp | 111 ------ src/src/splitting/ProbabilitySplittingRule.h | 32 - src/src/splitting/RegressionSplittingRule.cpp | 101 ----- src/src/splitting/RegressionSplittingRule.h | 78 ---- src/src/splitting/SplittingRule.h | 16 src/src/splitting/SurvivalSplittingRule.cpp |only src/src/splitting/SurvivalSplittingRule.h |only src/src/splitting/factory/InstrumentalSplittingRuleFactory.cpp | 4 src/src/splitting/factory/InstrumentalSplittingRuleFactory.h | 2 src/src/splitting/factory/ProbabilitySplittingRuleFactory.cpp | 4 src/src/splitting/factory/ProbabilitySplittingRuleFactory.h | 2 src/src/splitting/factory/RegressionSplittingRuleFactory.cpp | 4 src/src/splitting/factory/RegressionSplittingRuleFactory.h | 2 src/src/splitting/factory/SplittingRuleFactory.h | 2 src/src/splitting/factory/SurvivalSplittingRuleFactory.cpp |only src/src/splitting/factory/SurvivalSplittingRuleFactory.h |only src/src/tree/TreeTrainer.cpp | 3 93 files changed, 781 insertions(+), 1008 deletions(-)
Title: Generalized Order-Restricted Information Criterion
Description: Generalized Order-Restricted Information Criterion (GORIC) value for a set of hypotheses in multivariate linear models and generalised linear models.
Author: Daniel Gerhard [aut, cre],
Rebecca M. Kuiper [aut]
Maintainer: Daniel Gerhard <00gerhard@gmail.com>
Diff between goric versions 1.1-0 dated 2018-05-29 and 1.1-1 dated 2020-06-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/orlm.R | 2 +- build/vignette.rds |binary inst/doc/goric.R | 16 ++++++++-------- inst/doc/goric.html | 18 ++++++++++++------ 7 files changed, 32 insertions(+), 26 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', 'WeightIt', 'cem', 'sbw', and 'designmatch' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages. Also included are methods for assessing balance in clustered or multiply imputed data sets or data sets with longitudinal treatments.
Author: Noah Greifer [aut, cre] (<https://orcid.org/0000-0003-3067-7154>)
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 4.1.0 dated 2020-04-11 and 4.2.0 dated 2020-06-04
cobalt-4.1.0/cobalt/R/internal_utilities.R |only cobalt-4.2.0/cobalt/DESCRIPTION | 17 cobalt-4.2.0/cobalt/MD5 | 97 cobalt-4.2.0/cobalt/NAMESPACE | 15 cobalt-4.2.0/cobalt/NEWS.md | 32 cobalt-4.2.0/cobalt/R/SHARED.R | 327 - cobalt-4.2.0/cobalt/R/STATS.R | 22 cobalt-4.2.0/cobalt/R/bal.plot.R | 356 - cobalt-4.2.0/cobalt/R/bal.sum.R | 157 cobalt-4.2.0/cobalt/R/bal.tab.R | 377 - cobalt-4.2.0/cobalt/R/base.bal.tab.R | 50 cobalt-4.2.0/cobalt/R/functions_for_processing.R | 1507 ++++-- cobalt-4.2.0/cobalt/R/get.w.R | 199 cobalt-4.2.0/cobalt/R/love.plot.R | 286 - cobalt-4.2.0/cobalt/R/print.bal.tab.R | 238 - cobalt-4.2.0/cobalt/R/utilities.R | 207 cobalt-4.2.0/cobalt/R/x2base.R | 2182 ++++------ cobalt-4.2.0/cobalt/build/partial.rdb |binary cobalt-4.2.0/cobalt/build/vignette.rds |binary cobalt-4.2.0/cobalt/inst/doc/cobalt_A0_basic_use.R | 8 cobalt-4.2.0/cobalt/inst/doc/cobalt_A0_basic_use.Rmd | 24 cobalt-4.2.0/cobalt/inst/doc/cobalt_A0_basic_use.html | 286 - cobalt-4.2.0/cobalt/inst/doc/cobalt_A1_other_packages.R | 6 cobalt-4.2.0/cobalt/inst/doc/cobalt_A1_other_packages.Rmd | 10 cobalt-4.2.0/cobalt/inst/doc/cobalt_A1_other_packages.html | 66 cobalt-4.2.0/cobalt/inst/doc/cobalt_A2_segmented_data.Rmd | 4 cobalt-4.2.0/cobalt/inst/doc/cobalt_A2_segmented_data.html | 164 cobalt-4.2.0/cobalt/inst/doc/cobalt_A3_longitudinal_treat.Rmd | 2 cobalt-4.2.0/cobalt/inst/doc/cobalt_A3_longitudinal_treat.html | 18 cobalt-4.2.0/cobalt/inst/doc/cobalt_A4_love.plot.html | 16 cobalt-4.2.0/cobalt/man/bal.plot.Rd | 36 cobalt-4.2.0/cobalt/man/bal.tab.CBPS.Rd | 44 cobalt-4.2.0/cobalt/man/bal.tab.Match.Rd | 25 cobalt-4.2.0/cobalt/man/bal.tab.Rd | 7 cobalt-4.2.0/cobalt/man/bal.tab.cem.match.Rd | 8 cobalt-4.2.0/cobalt/man/bal.tab.default.Rd | 17 cobalt-4.2.0/cobalt/man/bal.tab.df.formula.Rd | 19 cobalt-4.2.0/cobalt/man/bal.tab.df.formula.list.Rd | 38 cobalt-4.2.0/cobalt/man/bal.tab.matchit.Rd | 8 cobalt-4.2.0/cobalt/man/bal.tab.mimids.Rd | 14 cobalt-4.2.0/cobalt/man/bal.tab.ps.Rd | 18 cobalt-4.2.0/cobalt/man/bal.tab.sbw.Rd | 8 cobalt-4.2.0/cobalt/man/bal.tab.weightit.Rd | 50 cobalt-4.2.0/cobalt/man/balance.summary.Rd | 14 cobalt-4.2.0/cobalt/man/f.build.Rd | 5 cobalt-4.2.0/cobalt/man/love.plot.Rd | 2 cobalt-4.2.0/cobalt/vignettes/cobalt_A0_basic_use.Rmd | 24 cobalt-4.2.0/cobalt/vignettes/cobalt_A1_other_packages.Rmd | 10 cobalt-4.2.0/cobalt/vignettes/cobalt_A2_segmented_data.Rmd | 4 cobalt-4.2.0/cobalt/vignettes/cobalt_A3_longitudinal_treat.Rmd | 2 50 files changed, 3673 insertions(+), 3353 deletions(-)
Title: Summarize Data for Scientific Publication
Description: Create and format tables and APA statistics for
scientific publication. This includes making a 'Table 1'
to summarize demographics across groups, correlation tables
with significance indicated by stars, and extracting formatted
statistical summarizes from simple tests for in-text notation.
The package also includes functions for Winsorizing data based
on a Z-statistic cutoff.
Author: David Pagliaccio [aut, cre] (<https://orcid.org/0000-0002-1214-1965>)
Maintainer: David Pagliaccio <david.pagliaccio@gmail.com>
Diff between scipub versions 1.0.0 dated 2020-05-18 and 1.1.0 dated 2020-06-04
DESCRIPTION | 8 MD5 | 28 NAMESPACE | 4 NEWS.md | 14 R/FullTable1.R | 38 R/apastat.R | 7 R/correltable.R | 4 R/partial_correltable.R |only README.md | 4 inst/doc/scipub_vignette.R | 16 inst/doc/scipub_vignette.Rmd | 39 inst/doc/scipub_vignette.html | 2011 +++++++++++++++++++++++++++++------------- man/FullTable1.Rd | 4 man/apastat.Rd | 1 man/partial_correltable.Rd |only vignettes/scipub_vignette.Rmd | 39 16 files changed, 1554 insertions(+), 663 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-22 0.24
2012-11-22 0.23
2011-11-14 0.22
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-14 1.7
2011-12-19 1.6
2011-10-10 1.5
2011-03-01 1.4
2011-02-24 1.3
2010-12-02 1.2
2010-06-16 1.1
2010-06-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-25 0.2-5
2015-12-27 0.2-4
2014-09-14 0.2-2
2014-03-20 0.2-0
2013-01-31 0.1-5
2013-01-30 0.1-4
2012-05-17 0.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-20 0.0-86.1
2018-03-01 0.0-86
2018-01-04 0.0-85
2017-07-17 0.0-84
2014-11-26 0.0-83
2013-11-11 0.0-82
2012-04-10 0.0-81
2012-04-03 0.0-80
2012-02-22 0.0-79
2011-12-22 0.0-78
2011-10-24 0.0-77
2011-09-02 0.0-76
2011-07-23 0.0-75
2011-05-08 0.0-74
2011-04-30 0.0-73
2011-01-21 0.0-72
2011-01-11 0.0-70
2010-09-26 0.0-69
2010-07-29 0.0-68
2010-07-09 0.0-67
2010-06-29 0.0-66
2010-05-06 0.0-65
2010-03-25 0.0-64
2010-03-19 0.0-63
2010-03-09 0.0-62
2010-03-07 0.0-61
2010-02-13 0.0-59
2010-01-05 0.0-58
2009-12-20 0.0-57
2009-12-16 0.0-56
2009-12-15 0.0-55
2009-09-09 0.0-54
2009-08-01 0.0-53
2009-06-14 0.0-52
2009-03-03 0.0-51
2009-02-13 0.0-50
2009-02-03 0.0-49
2008-12-18 0.0-48
2008-11-17 0.0-47
2008-10-30 0.0-46
2008-10-14 0.0-45
2008-10-13 0.0-44
2008-09-19 0.0-43
2008-09-12 0.0-42
2008-09-02 0.0-41
2008-08-27 0.0-40
2008-08-22 0.0-39
2008-08-08 0.0-38
2008-08-06 0.0-37
2008-07-20 0.0-36
2008-06-11 0.0-35
2008-05-19 0.0-34
2008-05-04 0.0-33
2008-04-27 0.0-31
2008-04-24 0.0-30
2008-01-24 0.0-29
2008-01-23 0.0-28
2007-11-07 0.0-27
2007-10-27 0.0-26
2007-09-25 0.0-25
2007-09-21 0.0-24
2007-09-01 0.0-23
2007-08-25 0.0-22
2007-08-09 0.0-21
2007-08-02 0.0-20
2007-07-12 0.0-19
2007-05-21 0.0-16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-06 0.4
2020-03-10 0.3
Title: Read Data from JSTOR/DfR
Description: Functions and helpers to import metadata, ngrams and full-texts
delivered by Data for Research by JSTOR.
Author: Thomas Klebel [aut, cre] (<https://orcid.org/0000-0002-7331-4751>)
Maintainer: Thomas Klebel <t.klebel@hotmail.com>
Diff between jstor versions 0.3.8 dated 2020-04-03 and 0.3.9 dated 2020-06-04
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 3 +++ build/vignette.rds |binary inst/doc/Introduction.html | 4 ++-- inst/doc/automating-file-import.html | 14 +++++++------- inst/doc/known-quirks.html | 4 ++-- tests/testthat/test-augment.R | 7 ++++--- tests/testthat/test-re-import.R | 23 ++++++++++++----------- 9 files changed, 42 insertions(+), 37 deletions(-)
Title: Identify Heritable Methylation Marks
Description: A novel statistical method based on expectation maximisation (EM)
algorithm and genetic segregation analysis to identify heritable DNA
methylation marks. Details about the method can be found in
Joo et al. (2018) <doi:10.1038/s41467-018-03058-6>.
Author: James Dowty [aut],
Kevin Wong [aut, cre]
Maintainer: Kevin Wong <wongck.kevin@gmail.com>
Diff between heritEWAS versions 0.1.0 dated 2020-04-29 and 0.2.0 dated 2020-06-04
heritEWAS-0.1.0/heritEWAS/R/calc_geno_probs.R |only heritEWAS-0.1.0/heritEWAS/R/calc_geno_probs_f.R |only heritEWAS-0.1.0/heritEWAS/R/compute_deltal.R |only heritEWAS-0.1.0/heritEWAS/man/calc_geno_probs.Rd |only heritEWAS-0.1.0/heritEWAS/man/compute_deltal.Rd |only heritEWAS-0.2.0/heritEWAS/DESCRIPTION | 6 heritEWAS-0.2.0/heritEWAS/MD5 | 37 heritEWAS-0.2.0/heritEWAS/NAMESPACE | 14 heritEWAS-0.2.0/heritEWAS/R/ML_estimates.R |only heritEWAS-0.2.0/heritEWAS/R/M_values.R | 10 heritEWAS-0.2.0/heritEWAS/R/calc_core_probs.R |only heritEWAS-0.2.0/heritEWAS/R/carrier_probabilities.R |only heritEWAS-0.2.0/heritEWAS/R/genotype_combinations.R |only heritEWAS-0.2.0/heritEWAS/R/genotype_combinations_f.R |only heritEWAS-0.2.0/heritEWAS/R/heritEWAS-package.R | 68 heritEWAS-0.2.0/heritEWAS/R/pedigree.R | 331 ++-- heritEWAS-0.2.0/heritEWAS/build/vignette.rds |binary heritEWAS-0.2.0/heritEWAS/inst/doc/demo.R | 60 heritEWAS-0.2.0/heritEWAS/inst/doc/demo.Rmd | 19 heritEWAS-0.2.0/heritEWAS/inst/doc/demo.html | 1158 ++++++++--------- heritEWAS-0.2.0/heritEWAS/man/ML_estimates.Rd |only heritEWAS-0.2.0/heritEWAS/man/M_values.Rd | 2 heritEWAS-0.2.0/heritEWAS/man/carrier_probabilities.Rd |only heritEWAS-0.2.0/heritEWAS/man/genotype_combinations.Rd |only heritEWAS-0.2.0/heritEWAS/man/heritEWAS-package.Rd | 2 heritEWAS-0.2.0/heritEWAS/vignettes/demo.Rmd | 19 26 files changed, 875 insertions(+), 851 deletions(-)
Title: Generation of ENVIREM Variables
Description: Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables.
Author: Pascal O. Title, Jordan B. Bemmels
Maintainer: Pascal Title <ptitle@iu.edu>
Diff between envirem versions 2.1 dated 2019-11-25 and 2.2 dated 2020-06-04
DESCRIPTION | 12 ++++----- MD5 | 20 ++++++++-------- NAMESPACE | 3 -- R/ETsolradRasters.R | 60 ++++++++++++++++++++++++++++++++++++++----------- R/embergerQ.R | 2 - R/envirem-package.R | 6 ++-- R/varnames.R | 17 ++++++------- man/ETsolradRasters.Rd | 5 +++- man/embergerQ.Rd | 2 - man/envirem.Rd | 4 +-- man/split_raster.Rd | 2 - 11 files changed, 84 insertions(+), 49 deletions(-)