Title: Terribly-Simple Data Base for Time Series
Description: A terribly-simple data base for numeric
time series, written purely in R, so no external
database-software is needed. Series are stored in
plain-text files (the most-portable and enduring file
type) in CSV format. Timestamps are encoded using R's
native numeric representation for 'Date'/'POSIXct',
which makes them fast to parse, but keeps them
accessible with other software. The package provides
tools for saving and updating series in this
standardised format, for retrieving and joining data,
for summarising files and directories, and for
coercing series from and to other data types (such as
'zoo' series).
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between tsdb versions 0.7-1 dated 2019-08-29 and 0.7-4 dated 2020-08-26
ChangeLog | 28 ++++++++++++++++++++++++++++ DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 15 +++++++++++++++ R/functions.R | 14 ++++++++++++-- inst/tinytest/test_tsdb.R | 33 +++++++++++++++++++++++++++++---- man/read_ts_tables.Rd | 13 ++++++++++++- 7 files changed, 107 insertions(+), 18 deletions(-)
Title: Accessing Data Stored in 'LaBB-CAT' Instances
Description: 'LaBB-CAT' is a web-based language corpus management
system developed by the New Zealand Institute of Language, Brain
and Behaviour (NZILBB) - see <https://labbcat.canterbury.ac.nz>.
This package defines functions for accessing corpus data in a 'LaBB-CAT'
instance. You must have at least version 20200812.1253 of 'LaBB-CAT'
to use this package.
For more information about 'LaBB-CAT', see
Robert Fromont and Jennifer Hay (2008) <doi:10.3366/E1749503208000142>
or
Robert Fromont (2017) <doi:10.1016/j.csl.2017.01.004>.
Author: Robert Fromont [aut, cre]
Maintainer: Robert Fromont <robert@fromont.net.nz>
Diff between nzilbb.labbcat versions 0.5-1 dated 2020-06-13 and 0.6-1 dated 2020-08-26
DESCRIPTION | 12 ++--- MD5 | 52 +++++++++++++++-------- NAMESPACE | 6 ++ NEWS.md |only R/getDeserializerDescriptors.R |only R/getFragments.R | 6 +- R/getMatchAlignments.R |only R/getMatchLabels.R | 5 +- R/getSerializerDescriptors.R |only R/getSystemAttribute.R |only R/getUserInfo.R |only R/labbcatCredentials.R | 10 +++- R/nzilbb.labbcat.R | 19 ++++++-- R/praatScriptCentreOfGravity.R | 4 - R/praatScriptFormants.R | 11 ++-- R/praatScriptIntensity.R | 6 +- R/praatScriptPitch.R | 4 - build/partial.rdb |binary man/getDeserializerDescriptors.Rd |only man/getFragments.Rd | 8 ++- man/getMatchAlignments.Rd |only man/getMatchLabels.Rd | 6 ++ man/getSerializerDescriptors.Rd |only man/getSystemAttribute.Rd |only man/getUserInfo.Rd |only man/praatScriptCentreOfGravity.Rd | 4 - man/praatScriptFormants.Rd | 11 ++-- man/praatScriptIntensity.Rd | 6 +- man/praatScriptPitch.Rd | 4 - tests/testthat/test-getDeserializerDescriptors.R |only tests/testthat/test-getLayer.R | 4 - tests/testthat/test-getMatchAlignments.R |only tests/testthat/test-getSerializerDescriptors.R |only tests/testthat/test-getSystemAttributes.R |only tests/testthat/test-getUserInfo.R |only 35 files changed, 114 insertions(+), 64 deletions(-)
More information about nzilbb.labbcat at CRAN
Permanent link
Title: Tools for Analyzing Climate Extremes
Description: Functions for fitting GEV and POT (via point process fitting)
models for extremes in climate data, providing return values, return
probabilities, and return periods for stationary and nonstationary models.
Also provides differences in return values and differences in log return
probabilities for contrasts of covariate values. Functions for estimating risk
ratios for event attribution analyses, including uncertainty. Under the hood,
many of the functions use functions from 'extRemes', including for fitting the
statistical models. Details are given in Paciorek, Stone, and Wehner (2018)
<doi:10.1016/j.wace.2018.01.002>.
Author: Christopher Paciorek [aut, cre],
Harinarayan Krishnan [ctb]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between climextRemes versions 0.2.1 dated 2019-06-03 and 0.2.2 dated 2020-08-26
DESCRIPTION | 10 LICENSE | 2 MD5 | 66 ++- NEWS | 12 R/gev.R | 14 R/helper.R | 4 R/pot.R | 15 R/return_calcs.R | 25 - R/risk_ratio.R | 6 inst/CITATION | 4 inst/README.md | 16 inst/conda/deploy.sh | 4 inst/conda/noarch/meta.yaml | 8 inst/pip/README.md | 2 inst/python/climextRemes_wrapper.py | 112 ++++-- inst/python_wrapper/COPYRIGHTS.txt | 2 inst/python_wrapper/LICENSE.txt | 2 inst/python_wrapper/README.md | 4 inst/python_wrapper/build |only inst/python_wrapper/climextremes.egg-info |only inst/python_wrapper/climextremes/__pycache__/__init__.cpython-37.pyc |only inst/python_wrapper/dist |only inst/python_wrapper/docs/html/index.html | 4 inst/python_wrapper/setup.py | 1 inst/python_wrapper/test_installation.sh | 179 ++-------- inst/python_wrapper/test_installation_0.2.1.sh |only inst/python_wrapper/version.py | 2 inst/tests/test-gev-pot.R | 23 - inst/tests/test-riskRatio.R | 14 man/calc_logReturnPeriod_fevd.Rd | 5 man/calc_logReturnProbDiff_fevd.Rd | 4 man/calc_logReturnProb_fevd.Rd | 4 man/fit_gev.Rd | 4 man/fit_pot.Rd | 2 34 files changed, 280 insertions(+), 270 deletions(-)
Title: Structural Bayesian Vector Autoregression Models
Description: Provides a function for estimating the parameters of Structural Bayesian Vector Autoregression models with the method developed by Baumeister and Hamilton (2015) <doi:10.3982/ECTA12356>, Baumeister and Hamilton (2017) <doi:10.3386/w24167>, and Baumeister and Hamilton (2018) <doi:10.1016/j.jmoneco.2018.06.005>. Functions for plotting impulse responses, historical decompositions, and posterior distributions of model parameters are also provided.
Author: Paul Richardson
Maintainer: Paul Richardson <p.richardson.54391@gmail.com>
Diff between BHSBVAR versions 2.0.2 dated 2020-01-18 and 2.1.0 dated 2020-08-26
DESCRIPTION | 10 MD5 | 39 NAMESPACE | 1 R/BHSBVAR.R | 3391 +++++++++++++++++++++-------------------- R/RcppExports.R | 114 - build/vignette.rds |binary inst/doc/BHSBVAR.R | 429 ++--- inst/doc/BHSBVAR.Rnw | 1126 ++++++------- inst/doc/BHSBVAR.pdf |binary man/BH_SBVAR.Rd | 11 man/FEVD_Plots.Rd |only man/USLMData.Rd | 4 src/BHSBVAR-init.c | 4 src/BHSBVAR.cpp | 89 + src/RcppExports.cpp | 7 vignettes/BHSBVAR.Rnw | 1126 ++++++------- vignettes/fig/Dist_plots-1.pdf |binary vignettes/fig/FEVD_plots-1.pdf |only vignettes/fig/HD_plots-1.pdf |binary vignettes/fig/IRF_plots-1.pdf |binary vignettes/fig/Model-1.pdf |binary vignettes/fig/VD_plots-1.pdf |only 22 files changed, 3348 insertions(+), 3003 deletions(-)
Title: Automatic Fixed Rank Kriging
Description: Automatic fixed rank kriging for (irregularly located)
spatial data using a class of basis functions with multi-resolution features
and ordered in terms of their resolutions. The model parameters are estimated
by maximum likelihood (ML) and the number of basis functions is determined
by Akaike's information criterion (AIC). For spatial data with either one
realization or independent replicates, the ML estimates and AIC are efficiently
computed using their closed-form expressions when no missing value occurs. Details
regarding the basis function construction, parameter estimation, and AIC calculation
can be found in Tzeng and Huang (2018) <doi:10.1080/00401706.2017.1345701>. For
data with missing values, the ML estimates are obtained using the expectation-
maximization algorithm. Apart from the number of basis functions, there are
no other tuning parameters, making the method fully automatic. Users can also
include a stationary structure in the spatial covariance, which utilizes
'LatticeKrig' package.
Author: ShengLi Tzeng [aut, cre], Hsin-Cheng Huang [aut], Wen-Ting Wang [ctb], Douglas Nychka [ctb], Colin Gillespie [ctb]
Maintainer: ShengLi Tzeng <slt.cmu@gmail.com>
Diff between autoFRK versions 1.3.0 dated 2020-05-27 and 1.3.1 dated 2020-08-26
DESCRIPTION | 10 +++++----- MD5 | 17 ++++++++++------- NAMESPACE | 2 +- R/RcppExports.R | 33 +++++++++++++++++++-------------- R/autoFRK.R | 27 ++++++++++++++++++++------- man/autoFRK.Rd | 1 + man/getASCeigens.Rd |only man/getEigen.Rd |only src/RcppExports.cpp | 23 +++++++++++++++++------ src/autoFRK.cpp | 19 +++++++++++++++++++ src/autoFRK_types.h |only 11 files changed, 92 insertions(+), 40 deletions(-)
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees [aut, cre],
Jake Anderson [ctb],
Leonard Lisapaly [ctb],
Dave Harris [aut, cph]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RSEIS versions 3.9-0 dated 2019-09-18 and 3.9-3 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 38 +++++++++++++++++++------------------- R/EPOCHyear.R | 8 +++++--- R/GET.seis.R | 26 ++++++++++++++++++++++++-- R/JGET.seis.R | 28 ++++++++++++++++++++++++++-- R/JSAC.seis.R | 2 +- R/Jtim.R | 9 +++++---- R/P2GH.R | 2 +- R/PLOT.SEISN.R | 5 +++-- R/ReadSet.Instr.R | 53 +++++++++++++++++++++++++++++++++++++++++++---------- R/VELOCITY.SEISN.R | 1 + R/getpfile.R | 24 ++++++++++++------------ R/prepSEIS.R | 2 +- R/sac2rseis.R | 5 +++-- R/segy2rseis.R | 18 ++++++++++-------- R/setwpix.R | 2 +- R/swig.R | 3 ++- data/datalist | 2 +- man/Jtim.Rd | 18 ++++++++++++++---- man/PLOT.MATN.Rd | 2 +- 20 files changed, 177 insertions(+), 79 deletions(-)
Title: Repeated Measures Correlation
Description: Compute the repeated measures correlation, a statistical technique
for determining the overall within-individual relationship among paired measures
assessed on two or more occasions, first introduced by Bland and Altman (1995).
Includes functions for diagnostics, p-value, effect size with confidence
interval including optional bootstrapping, as well as graphing. Also includes
several example datasets. For more details, see Bakdash and Marusich (2017) <doi:10.3389/fpsyg.2017.00456>.
Author: Jonathan Z. Bakdash, Laura R. Marusich
Maintainer: Laura R. Marusich <laura.m.cooper20.civ@mail.mil>
Diff between rmcorr versions 0.4.0 dated 2020-06-27 and 0.4.1 dated 2020-08-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/rmcorr.R | 2 +- build/partial.rdb |binary 5 files changed, 12 insertions(+), 8 deletions(-)
Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic
regression, naive Bayes, neural networks, classification and regression trees,
model evaluation, collaborative filtering, decision analysis, and simulation.
The application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.model versions 1.3.13 dated 2020-08-10 and 1.3.14 dated 2020-08-26
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 5 +++-- README.md | 4 ++-- tests/testthat/test_stats.R | 7 +++---- 5 files changed, 17 insertions(+), 17 deletions(-)
Title: Various Programming Utilities
Description: Utility functions useful when programming and developing R packages.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.utils versions 2.9.2 dated 2019-12-08 and 2.10.1 dated 2020-08-26
DESCRIPTION | 8 +- MD5 | 74 ++++++++++++------------ NEWS | 24 +++++++ R/Arguments.R | 3 R/System.R | 10 +-- R/captureOutput.R | 4 - R/commandArgs.R | 5 + R/countLines.R | 2 R/createLink.R | 2 R/createWindowsShortcut.R | 4 - R/downloadFile.R | 2 R/fileAccess.R | 2 R/getAbsolutePath.R | 4 - R/getCommonPrefix.R | 2 R/installPackages.R | 4 - R/readWindowsShortcut.R | 10 +-- R/sourceDirectory.R | 3 R/touchFile.R | 2 R/useRepos.R | 4 - R/withCapture.R | 2 R/withTimeout.R | 4 - man/captureOutput.Rd | 4 - man/countLines.Rd | 2 man/createLink.Rd | 2 man/createWindowsShortcut.Rd | 2 man/downloadFile.character.Rd | 2 man/fileAccess.Rd | 2 man/findGhostscript.System.Rd | 8 +- man/getFilename.Arguments.Rd | 3 man/installPackages.Rd | 4 - man/openBrowser.System.Rd | 2 man/readWindowsShortcut.Rd | 8 +- man/touchFile.Rd | 2 man/withTimeout.Rd | 4 - tests/absolute-relative-paths.R | 121 ++++++++++++++++++++-------------------- tests/attachLocally.R | 2 tests/wrap.array.R | 4 - tests/writeDataFrame.R | 3 38 files changed, 194 insertions(+), 156 deletions(-)
Title: Analyze Multinomial Processing Tree Models
Description: Provides a user-friendly way for the analysis of multinomial processing tree (MPT) models (e.g., Riefer, D. M., and Batchelder, W. H. [1988]. Multinomial modeling and the measurement of cognitive processes. Psychological Review, 95, 318-339) for single and multiple datasets. The main functions perform model fitting and model selection. Model selection can be done using AIC, BIC, or the Fisher Information Approximation (FIA) a measure based on the Minimum Description Length (MDL) framework. The model and restrictions can be specified in external files or within an R script in an intuitive syntax or using the context-free language for MPTs. The 'classical' .EQN file format for model files is also supported. Besides MPTs, this package can fit a wide variety of other cognitive models such as SDT models (see fit.model). It also supports multicore fitting and FIA calculation (using the snowfall package), can generate or bootstrap data for simulations, and plot predicted versus observed data.
Author: Henrik Singmann [aut, cre],
David Kellen [aut],
Quentin Gronau [aut],
Christian Mueller [ctb],
Akhil S Bhel [ctb]
Maintainer: Henrik Singmann <singmann@gmail.com>
Diff between MPTinR versions 1.12.0 dated 2019-12-14 and 1.13.0 dated 2020-08-26
DESCRIPTION | 6 MD5 | 34 - NEWS | 16 R/RcppExports.R | 22 R/fit.mptinr.R | 9 R/get.mpt.fia.R | 316 ++++----- R/make.model.df.R | 76 +- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/mptinr_introduction.R | 394 +++++------ inst/doc/mptinr_introduction.Rnw | 1260 +++++++++++++++++++------------------- inst/doc/mptinr_introduction.pdf |binary man/MPTinR-package.Rd | 60 - man/fit.mpt.Rd | 810 ++++++++++++------------ man/prediction.plot.Rd | 332 +++++----- man/rocs.Rd | 376 +++++------ vignettes/mptinr_introduction.Rnw | 1260 +++++++++++++++++++------------------- 18 files changed, 2498 insertions(+), 2475 deletions(-)
Title: Process and Analyze Mouse-Tracking Data
Description: Mouse-tracking, the analysis of mouse movements in computerized
experiments, is a method that is becoming increasingly popular in the
cognitive sciences. The mousetrap package offers functions for importing,
preprocessing, analyzing, aggregating, and visualizing mouse-tracking data.
Author: Pascal J. Kieslich [aut, cre] (<https://orcid.org/0000-0002-0853-9364>),
Dirk U. Wulff [aut] (<https://orcid.org/0000-0002-4008-8022>),
Felix Henninger [aut] (<https://orcid.org/0000-0002-7730-9511>),
Jonas M. B. Haslbeck [aut],
Sarah Brockhaus [ctb]
Maintainer: Pascal J. Kieslich <pascal.kieslich@gmail.com>
Diff between mousetrap versions 3.1.4 dated 2019-12-05 and 3.1.5 dated 2020-08-26
mousetrap-3.1.4/mousetrap/data/datalist |only mousetrap-3.1.5/mousetrap/DESCRIPTION | 16 mousetrap-3.1.5/mousetrap/MD5 | 181 ++-- mousetrap-3.1.5/mousetrap/NAMESPACE | 1 mousetrap-3.1.5/mousetrap/NEWS.md | 18 mousetrap-3.1.5/mousetrap/R/add.R | 6 mousetrap-3.1.5/mousetrap/R/aggregate.R | 10 mousetrap-3.1.5/mousetrap/R/align.R | 2 mousetrap-3.1.5/mousetrap/R/angles.R | 2 mousetrap-3.1.5/mousetrap/R/animate.R | 6 mousetrap-3.1.5/mousetrap/R/bezier.R | 2 mousetrap-3.1.5/mousetrap/R/bimodality.R | 9 mousetrap-3.1.5/mousetrap/R/check.R | 13 mousetrap-3.1.5/mousetrap/R/cluster.R | 4 mousetrap-3.1.5/mousetrap/R/cluster_k.R | 4 mousetrap-3.1.5/mousetrap/R/data.R | 4 mousetrap-3.1.5/mousetrap/R/derivatives.R | 6 mousetrap-3.1.5/mousetrap/R/deviations.R | 2 mousetrap-3.1.5/mousetrap/R/distmat.R | 4 mousetrap-3.1.5/mousetrap/R/export.R | 2 mousetrap-3.1.5/mousetrap/R/heatmap.R | 14 mousetrap-3.1.5/mousetrap/R/import.R | 94 ++ mousetrap-3.1.5/mousetrap/R/map.R | 6 mousetrap-3.1.5/mousetrap/R/measures.R | 28 mousetrap-3.1.5/mousetrap/R/mousetrap.R | 6 mousetrap-3.1.5/mousetrap/R/preprocess.R | 24 mousetrap-3.1.5/mousetrap/R/quantileeffect.R | 2 mousetrap-3.1.5/mousetrap/R/read_mt.R | 2 mousetrap-3.1.5/mousetrap/R/reshape.R | 43 - mousetrap-3.1.5/mousetrap/R/riverbed.R | 21 mousetrap-3.1.5/mousetrap/R/sample_entropy.R | 2 mousetrap-3.1.5/mousetrap/R/spatialize.R | 4 mousetrap-3.1.5/mousetrap/R/standardize.R | 6 mousetrap-3.1.5/mousetrap/R/startupmessage.R | 6 mousetrap-3.1.5/mousetrap/R/visualize.R | 43 - mousetrap-3.1.5/mousetrap/README.md | 12 mousetrap-3.1.5/mousetrap/man/KH2017.Rd | 120 +-- mousetrap-3.1.5/mousetrap/man/KH2017_raw.Rd | 134 +-- mousetrap-3.1.5/mousetrap/man/bezier.Rd | 88 +- mousetrap-3.1.5/mousetrap/man/bimodality_coefficient.Rd | 105 +- mousetrap-3.1.5/mousetrap/man/mousetrap.Rd | 517 ++++++-------- mousetrap-3.1.5/mousetrap/man/mt_add_trajectory.Rd | 109 +- mousetrap-3.1.5/mousetrap/man/mt_add_variables.Rd | 118 +-- mousetrap-3.1.5/mousetrap/man/mt_aggregate.Rd | 219 +++-- mousetrap-3.1.5/mousetrap/man/mt_aggregate_per_subject.Rd | 215 +++-- mousetrap-3.1.5/mousetrap/man/mt_align.Rd | 209 ++--- mousetrap-3.1.5/mousetrap/man/mt_align_start.Rd | 150 ++-- mousetrap-3.1.5/mousetrap/man/mt_align_start_end.Rd | 182 ++-- mousetrap-3.1.5/mousetrap/man/mt_angles.Rd | 170 ++-- mousetrap-3.1.5/mousetrap/man/mt_animate.Rd | 377 +++++----- mousetrap-3.1.5/mousetrap/man/mt_average.Rd | 240 +++--- mousetrap-3.1.5/mousetrap/man/mt_bind.Rd | 72 - mousetrap-3.1.5/mousetrap/man/mt_check_bimodality.Rd | 257 +++--- mousetrap-3.1.5/mousetrap/man/mt_check_resolution.Rd | 115 +-- mousetrap-3.1.5/mousetrap/man/mt_cluster.Rd | 325 ++++---- mousetrap-3.1.5/mousetrap/man/mt_cluster_k.Rd | 356 ++++----- mousetrap-3.1.5/mousetrap/man/mt_count.Rd | 95 +- mousetrap-3.1.5/mousetrap/man/mt_derivatives.Rd | 217 +++-- mousetrap-3.1.5/mousetrap/man/mt_deviations.Rd | 189 ++--- mousetrap-3.1.5/mousetrap/man/mt_diffmap.Rd | 247 +++--- mousetrap-3.1.5/mousetrap/man/mt_distmat.Rd | 171 ++-- mousetrap-3.1.5/mousetrap/man/mt_example.Rd | 96 +- mousetrap-3.1.5/mousetrap/man/mt_example_raw.Rd | 136 +-- mousetrap-3.1.5/mousetrap/man/mt_exclude_initiation.Rd | 152 ++-- mousetrap-3.1.5/mousetrap/man/mt_export_long.Rd | 174 ++-- mousetrap-3.1.5/mousetrap/man/mt_heatmap.Rd | 155 ++-- mousetrap-3.1.5/mousetrap/man/mt_heatmap_ggplot.Rd | 157 ++-- mousetrap-3.1.5/mousetrap/man/mt_heatmap_raw.Rd | 303 ++++---- mousetrap-3.1.5/mousetrap/man/mt_import_long.Rd | 218 +++-- mousetrap-3.1.5/mousetrap/man/mt_import_mousetrap.Rd | 262 +++---- mousetrap-3.1.5/mousetrap/man/mt_import_wide.Rd | 241 +++--- mousetrap-3.1.5/mousetrap/man/mt_map.Rd | 342 ++++----- mousetrap-3.1.5/mousetrap/man/mt_measures.Rd | 455 ++++++------ mousetrap-3.1.5/mousetrap/man/mt_plot.Rd | 432 ++++++----- mousetrap-3.1.5/mousetrap/man/mt_plot_add_rect.Rd | 144 +-- mousetrap-3.1.5/mousetrap/man/mt_plot_per_trajectory.Rd | 194 ++--- mousetrap-3.1.5/mousetrap/man/mt_plot_riverbed.Rd | 219 +++-- mousetrap-3.1.5/mousetrap/man/mt_prototypes.Rd | 70 - mousetrap-3.1.5/mousetrap/man/mt_qeffect.Rd | 118 +-- mousetrap-3.1.5/mousetrap/man/mt_remap_symmetric.Rd | 167 ++-- mousetrap-3.1.5/mousetrap/man/mt_resample.Rd | 207 ++--- mousetrap-3.1.5/mousetrap/man/mt_reshape.Rd | 361 +++++---- mousetrap-3.1.5/mousetrap/man/mt_sample_entropy.Rd | 219 +++-- mousetrap-3.1.5/mousetrap/man/mt_scale_trajectories.Rd | 164 ++-- mousetrap-3.1.5/mousetrap/man/mt_space_normalize.Rd | 154 ++-- mousetrap-3.1.5/mousetrap/man/mt_spatialize.Rd | 123 +-- mousetrap-3.1.5/mousetrap/man/mt_standardize.Rd | 149 ++-- mousetrap-3.1.5/mousetrap/man/mt_subset.Rd | 132 +-- mousetrap-3.1.5/mousetrap/man/mt_time_normalize.Rd | 174 ++-- mousetrap-3.1.5/mousetrap/man/read_mt.Rd | 137 +-- mousetrap-3.1.5/mousetrap/man/reexports.Rd | 2 mousetrap-3.1.5/mousetrap/man/scale_within.Rd | 118 +-- 92 files changed, 6058 insertions(+), 5519 deletions(-)
Title: Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Description: Package provides the estimation of the structure and the parameters, sampling methods and structural plots of Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin <ostap.okhrin@tu-dresden.de> and Alexander Ristig <alexander.ristig@univie.ac.at>
Maintainer: Alexander Ristig <alexander.ristig@univie.ac.at>
Diff between HAC versions 1.0-7 dated 2020-06-09 and 1.0-8 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/estimate.r | 4 ++-- inst/ChangeLog | 6 ++++++ inst/doc/HAC.R | 26 +++++++++++++------------- inst/doc/HAC.Rnw | 15 +++------------ inst/doc/HAC.pdf |binary vignettes/HAC.Rnw | 15 +++------------ 8 files changed, 38 insertions(+), 50 deletions(-)
Title: Toolkit for Credit Modeling, Analysis and Visualization
Description: Provides a highly efficient R tool suite for Credit Modeling, Analysis and Visualization. Contains infrastructure functionalities such as data exploration and preparation, missing values treatment, outliers treatment, variable derivation, variable selection, dimensionality reduction, grid search for hyper parameters, data mining and visualization, model evaluation, strategy analysis etc. This package is designed to make the development of binary classification models (machine learning based models as well as credit scorecard) simpler and faster.
Author: Dongping Fan [aut, cre]
Maintainer: Dongping Fan <fdp@pku.edu.cn>
Diff between creditmodel versions 1.2.4 dated 2020-07-13 and 1.2.5 dated 2020-08-26
DESCRIPTION | 10 MD5 | 193 ++++++------- NAMESPACE | 1 NEWS.md | 7 R/data_anaylsis.R | 512 +++++++++++++++++++++++------------- R/data_cleansing.R | 295 ++++++++++---------- R/data_transformation.R | 132 ++++++--- R/data_visualization.R | 507 ++++++++++++++++++++++++++++------- R/essential_algorithms.R | 18 - R/outliers_missing_treatment.R | 49 ++- inst/doc/introduction.html | 144 +++------- man/UCICreditCard.Rd | 4 man/address_varieble.Rd | 8 man/analysis_nas.Rd | 11 man/char_cor_vars.Rd | 3 man/char_to_num.Rd | 8 man/checking_data.Rd | 9 man/city_varieble.Rd | 9 man/cohort_analysis.Rd | 32 +- man/cor_heat_plot.Rd | 8 man/cor_plot.Rd | 10 man/cross_table.Rd | 18 + man/customer_segmentation.Rd | 16 - man/data_cleansing.Rd | 27 + man/data_exploration.Rd | 8 man/de_one_hot_encoding.Rd | 3 man/derived_interval.Rd | 3 man/derived_ts_vars.Rd | 30 +- man/entropy_weight.Rd | 8 man/ewm_data.Rd | 4 man/fast_high_cor_filter.Rd | 36 ++ man/feature_selector.Rd | 32 +- man/fuzzy_cluster_means.Rd | 13 man/gbm_filter.Rd | 20 + man/gbm_params.Rd | 13 man/get_auc_ks_lambda.Rd | 11 man/get_bins_table_all.Rd | 34 +- man/get_breaks_all.Rd | 52 ++- man/get_ctree_rules.Rd | 11 man/get_iv_all.Rd | 36 ++ man/get_logistic_coef.Rd | 8 man/get_names.Rd | 10 man/get_plots.Rd | 51 ++- man/get_psi_all.Rd | 44 ++- man/get_psi_iv_all.Rd | 55 +++ man/get_psi_plots.Rd | 35 +- man/get_score_card.Rd | 12 man/get_tree_breaks.Rd | 10 man/get_x_list.Rd | 9 man/high_cor_selector.Rd | 9 man/knn_nas_imp.Rd | 14 man/ks_table.Rd | 44 ++- man/lasso_filter.Rd | 21 + man/lendingclub.Rd | 4 man/log_trans.Rd | 13 man/loop_function.Rd | 10 man/low_variance_filter.Rd | 9 man/lr_params.Rd | 49 ++- man/merge_category.Rd | 3 man/model_result_plot.Rd | 81 ++++- man/one_hot_encoding.Rd | 10 man/partial_dependence_plot.Rd | 13 man/plot_bar.Rd | 49 +++ man/plot_box.Rd | 11 man/plot_density.Rd | 15 - man/plot_distribution.Rd | 22 + man/plot_line.Rd |only man/plot_oot_perf.Rd | 22 + man/plot_relative_freq_histogram.Rd | 17 + man/plot_table.Rd | 34 +- man/plot_theme.Rd | 17 - man/pred_score.Rd | 14 man/pred_xgb.Rd | 10 man/process_nas.Rd | 46 ++- man/process_outliers.Rd | 32 +- man/psi_iv_filter.Rd | 37 +- man/ranking_percent_proc.Rd | 30 +- man/read_data.Rd | 14 man/reduce_high_cor_filter.Rd | 13 man/remove_duplicated.Rd | 9 man/replace_value.Rd | 24 + man/rf_params.Rd | 3 man/rule_value_replace.Rd | 8 man/save_data.Rd | 13 man/score_transfer.Rd | 11 man/select_best_class.Rd | 30 +- man/split_bins_all.Rd | 15 - man/swap_analysis.Rd | 10 man/time_variable.Rd | 9 man/time_vars_process.Rd | 9 man/train_lr.Rd | 24 + man/train_test_split.Rd | 17 - man/train_xgb.Rd | 16 - man/training_model.Rd | 55 ++- man/woe_trans_all.Rd | 29 +- man/xgb_data.Rd | 10 man/xgb_filter.Rd | 30 +- man/xgb_params.Rd | 41 ++ 98 files changed, 2524 insertions(+), 1081 deletions(-)
Title: Measuring Morphological Diversity and Evolutionary Tempo
Description: Measures morphological diversity from discrete character data and
estimates evolutionary tempo on phylogenetic trees. Imports morphological
data from #NEXUS (Maddison et al. (1997) <doi:10.1093/sysbio/46.4.590>)
format with read_nexus_matrix(), and writes to both #NEXUS and TNT format
(Goloboff et al. (2008) <doi:10.1111/j.1096-0031.2008.00217.x>). Main
functions are test_rates(), which implements AIC and likelihood
ratio tests for discrete character rates introduced across Lloyd et al.
(2012) <doi:10.1111/j.1558-5646.2011.01460.x>, Brusatte et al. (2014)
<doi:10.1016/j.cub.2014.08.034>, Close et al. (2015)
<doi:10.1016/j.cub.2015.06.047>, and Lloyd (2016) <doi:10.1111/bij.12746>,
and MatrixDistances(), which implements multiple discrete character
distance metrics from Gower (1971) <doi:10.2307/2528823>, Wills (1998)
<doi:10.1006/bijl.1998.0255>, Lloyd (2016) <doi:10.1111/bij.12746>, and
Hopkins and St John (2018) <doi:10.1098/rspb.2018.1784>. This also includes
the GED correction from Lehmann et al. (2019) <doi:10.1111/pala.12430>.
Multiple functions implement morphospace plots:
plot_chronophylomorphospace() implements Sakamoto and Ruta (2012)
<doi:10.1371/journal.pone.0039752>, plot_morphospace() implements Wills et
al. (1994) <doi:10.1017/S009483730001263X>, plot_changes_on_tree()
implements Wang and Lloyd (2016) <doi:10.1098/rspb.2016.0214>, and
plot_morphospace_stack() implements Foote (1993)
<doi:10.1017/S0094837300015864>. Other functions include
safe_taxonomic_reduction(), which implements Wilkinson (1995)
<doi:10.1093/sysbio/44.4.501>, map_dollo_changes() implements
the Dollo stochastic character mapping of Tarver et al. (2018)
<doi:10.1093/gbe/evy096>, and estimate_ancestral_states() implements
the ancestral state options of Lloyd (2018) <doi:10.1111/pala.12380>.
Author: Graeme T. Lloyd [aut, cre, cph],
Thomas Guillerme [aut, cph],
Emma Sherratt [aut, cph],
Steve C. Wang [aut, cph]
Maintainer: Graeme T. Lloyd <graemetlloyd@gmail.com>
Diff between Claddis versions 0.3.4 dated 2019-12-05 and 0.6.1 dated 2020-08-26
Claddis-0.3.4/Claddis/R/AncStateEstMatrix.R |only Claddis-0.3.4/Claddis/R/BlockAligner.R |only Claddis-0.3.4/Claddis/R/ChangesInBins.R |only Claddis-0.3.4/Claddis/R/ChronoPhyloMorphospacePlot.R |only Claddis-0.3.4/Claddis/R/CompactifyMatrix.R |only Claddis-0.3.4/Claddis/R/CorrectRootTime.R |only Claddis-0.3.4/Claddis/R/DiscreteCharacterRate.R |only Claddis-0.3.4/Claddis/R/DolloSCM.R |only Claddis-0.3.4/Claddis/R/EdgeLengthsInBins.R |only Claddis-0.3.4/Claddis/R/EdgeMatch.R |only Claddis-0.3.4/Claddis/R/FindAncestor.R |only Claddis-0.3.4/Claddis/R/FindLinkedEdges.R |only Claddis-0.3.4/Claddis/R/GetAllStateChanges.R |only Claddis-0.3.4/Claddis/R/GetDescendantEdges.R |only Claddis-0.3.4/Claddis/R/GetNodeAges.R |only Claddis-0.3.4/Claddis/R/MakeMorphMatrix.R |only Claddis-0.3.4/Claddis/R/MatrixPruner.R |only Claddis-0.3.4/Claddis/R/MinSpanTreeEdges.R |only Claddis-0.3.4/Claddis/R/MorphDistMatrix.R |only Claddis-0.3.4/Claddis/R/MorphMatrix2PCoA.R |only Claddis-0.3.4/Claddis/R/MorphospacePlot.R |only Claddis-0.3.4/Claddis/R/MultiMorphospacePlot.R |only Claddis-0.3.4/Claddis/R/PhyloCharCompletenessInBins.R |only Claddis-0.3.4/Claddis/R/PlotCharacterChanges.R |only Claddis-0.3.4/Claddis/R/ReadMorphNexus.R |only Claddis-0.3.4/Claddis/R/SafeTaxonomicReduction.R |only Claddis-0.3.4/Claddis/R/SafeTaxonomicReinsertion.R |only Claddis-0.3.4/Claddis/R/StackPlot.R |only Claddis-0.3.4/Claddis/R/TrimMorphDistMatrix.R |only Claddis-0.3.4/Claddis/R/WriteMorphNexus.R |only Claddis-0.3.4/Claddis/R/WriteMorphTNT.R |only Claddis-0.3.4/Claddis/data/Day2016.RData |only Claddis-0.3.4/Claddis/data/Gauthier1986.RData |only Claddis-0.3.4/Claddis/data/Michaux1989.RData |only Claddis-0.3.4/Claddis/man/AncStateEstMatrix.Rd |only Claddis-0.3.4/Claddis/man/BlockAligner.Rd |only Claddis-0.3.4/Claddis/man/ChangesInBins.Rd |only Claddis-0.3.4/Claddis/man/ChronoPhyloMorphospacePlot.Rd |only Claddis-0.3.4/Claddis/man/CompactifyMatrix.Rd |only Claddis-0.3.4/Claddis/man/CorrectRootTime.Rd |only Claddis-0.3.4/Claddis/man/Day2016.Rd |only Claddis-0.3.4/Claddis/man/DiscreteCharacterRate.Rd |only Claddis-0.3.4/Claddis/man/DolloSCM.Rd |only Claddis-0.3.4/Claddis/man/EdgeLengthsInBins.Rd |only Claddis-0.3.4/Claddis/man/EdgeMatch.Rd |only Claddis-0.3.4/Claddis/man/FindAncestor.Rd |only Claddis-0.3.4/Claddis/man/FindLinkedEdges.Rd |only Claddis-0.3.4/Claddis/man/Gauthier1986.Rd |only Claddis-0.3.4/Claddis/man/GetAllStateChanges.Rd |only Claddis-0.3.4/Claddis/man/GetDescendantEdges.Rd |only Claddis-0.3.4/Claddis/man/GetNodeAges.Rd |only Claddis-0.3.4/Claddis/man/MakeMorphMatrix.Rd |only Claddis-0.3.4/Claddis/man/MatrixPruner.Rd |only Claddis-0.3.4/Claddis/man/Michaux1989.Rd |only Claddis-0.3.4/Claddis/man/MinSpanTreeEdges.Rd |only Claddis-0.3.4/Claddis/man/MorphDistMatrix.Rd |only Claddis-0.3.4/Claddis/man/MorphMatrix2PCoA.Rd |only Claddis-0.3.4/Claddis/man/MorphospacePlot.Rd |only Claddis-0.3.4/Claddis/man/MultiMorphospacePlot.Rd |only Claddis-0.3.4/Claddis/man/PhyloCharCompletenessInBins.Rd |only Claddis-0.3.4/Claddis/man/PlotCharacterChanges.Rd |only Claddis-0.3.4/Claddis/man/ReadMorphNexus.Rd |only Claddis-0.3.4/Claddis/man/SafeTaxonomicReduction.Rd |only Claddis-0.3.4/Claddis/man/SafeTaxonomicReinsertion.Rd |only Claddis-0.3.4/Claddis/man/StackPlot.Rd |only Claddis-0.3.4/Claddis/man/TrimMorphDistMatrix.Rd |only Claddis-0.3.4/Claddis/man/WriteMorphNexus.Rd |only Claddis-0.3.4/Claddis/man/WriteMorphTNT.Rd |only Claddis-0.6.1/Claddis/CHANGELOG |only Claddis-0.6.1/Claddis/DESCRIPTION | 52 +-- Claddis-0.6.1/Claddis/MD5 | 160 +++++----- Claddis-0.6.1/Claddis/NAMESPACE | 72 ++-- Claddis-0.6.1/Claddis/R/Claddis-package.R | 70 +--- Claddis-0.6.1/Claddis/R/align_matrix_block.R |only Claddis-0.6.1/Claddis/R/assign_taxa_to_bins.R |only Claddis-0.6.1/Claddis/R/bin_changes.R |only Claddis-0.6.1/Claddis/R/bin_character_completeness.R |only Claddis-0.6.1/Claddis/R/bin_edge_lengths.R |only Claddis-0.6.1/Claddis/R/build_cladistic_matrix.R |only Claddis-0.6.1/Claddis/R/calculate_morphological_distances.R |only Claddis-0.6.1/Claddis/R/compactify_matrix.R |only Claddis-0.6.1/Claddis/R/date_nodes.R |only Claddis-0.6.1/Claddis/R/estimate_ancestral_states.R |only Claddis-0.6.1/Claddis/R/find_descendant_edges.R |only Claddis-0.6.1/Claddis/R/find_linked_edges.R |only Claddis-0.6.1/Claddis/R/find_minimum_spanning_edges.R |only Claddis-0.6.1/Claddis/R/find_mrca.R |only Claddis-0.6.1/Claddis/R/fix_root_time.R |only Claddis-0.6.1/Claddis/R/map_dollo_changes.R |only Claddis-0.6.1/Claddis/R/map_stochastic_changes.R |only Claddis-0.6.1/Claddis/R/match_tree_edges.R |only Claddis-0.6.1/Claddis/R/ordinate_cladistic_matrix.R |only Claddis-0.6.1/Claddis/R/partition_time_bins.R |only Claddis-0.6.1/Claddis/R/plot_changes_on_tree.R |only Claddis-0.6.1/Claddis/R/plot_chronophylomorphospace.R |only Claddis-0.6.1/Claddis/R/plot_morphospace.R |only Claddis-0.6.1/Claddis/R/plot_morphospace_stack.R |only Claddis-0.6.1/Claddis/R/plot_multi_morphospace.R |only Claddis-0.6.1/Claddis/R/plot_rates_character.R |only Claddis-0.6.1/Claddis/R/plot_rates_time.R |only Claddis-0.6.1/Claddis/R/plot_rates_tree.R |only Claddis-0.6.1/Claddis/R/prune_cladistic_matrix.R |only Claddis-0.6.1/Claddis/R/read_nexus_matrix.R |only Claddis-0.6.1/Claddis/R/safe_taxonomic_reduction.R |only Claddis-0.6.1/Claddis/R/safe_taxonomic_reinsertion.R |only Claddis-0.6.1/Claddis/R/test_rates.R |only Claddis-0.6.1/Claddis/R/trim_matrix.R |only Claddis-0.6.1/Claddis/R/write_nexus_matrix.R |only Claddis-0.6.1/Claddis/R/write_tnt_matrix.R |only Claddis-0.6.1/Claddis/README.md | 31 + Claddis-0.6.1/Claddis/data/day_2016.RData |only Claddis-0.6.1/Claddis/data/gauthier_1986.RData |only Claddis-0.6.1/Claddis/data/michaux_1989.RData |only Claddis-0.6.1/Claddis/man/Claddis-package.Rd | 5 Claddis-0.6.1/Claddis/man/align_matrix_block.Rd |only Claddis-0.6.1/Claddis/man/assign_taxa_to_bins.Rd |only Claddis-0.6.1/Claddis/man/bin_changes.Rd |only Claddis-0.6.1/Claddis/man/bin_character_completeness.Rd |only Claddis-0.6.1/Claddis/man/bin_edge_lengths.Rd |only Claddis-0.6.1/Claddis/man/build_cladistic_matrix.Rd |only Claddis-0.6.1/Claddis/man/calculate_morphological_distances.Rd |only Claddis-0.6.1/Claddis/man/compactify_matrix.Rd |only Claddis-0.6.1/Claddis/man/date_nodes.Rd |only Claddis-0.6.1/Claddis/man/day_2016.Rd |only Claddis-0.6.1/Claddis/man/estimate_ancestral_states.Rd |only Claddis-0.6.1/Claddis/man/find_descendant_edges.Rd |only Claddis-0.6.1/Claddis/man/find_linked_edges.Rd |only Claddis-0.6.1/Claddis/man/find_minimum_spanning_edges.Rd |only Claddis-0.6.1/Claddis/man/find_mrca.Rd |only Claddis-0.6.1/Claddis/man/fix_root_time.Rd |only Claddis-0.6.1/Claddis/man/gauthier_1986.Rd |only Claddis-0.6.1/Claddis/man/map_dollo_changes.Rd |only Claddis-0.6.1/Claddis/man/map_stochastic_changes.Rd |only Claddis-0.6.1/Claddis/man/match_tree_edges.Rd |only Claddis-0.6.1/Claddis/man/michaux_1989.Rd |only Claddis-0.6.1/Claddis/man/ordinate_cladistic_matrix.Rd |only Claddis-0.6.1/Claddis/man/partition_time_bins.Rd |only Claddis-0.6.1/Claddis/man/plot_changes_on_tree.Rd |only Claddis-0.6.1/Claddis/man/plot_chronophylomorphospace.Rd |only Claddis-0.6.1/Claddis/man/plot_morphospace.Rd |only Claddis-0.6.1/Claddis/man/plot_morphospace_stack.Rd |only Claddis-0.6.1/Claddis/man/plot_multi_morphospace.Rd |only Claddis-0.6.1/Claddis/man/plot_rates_character.Rd |only Claddis-0.6.1/Claddis/man/plot_rates_time.Rd |only Claddis-0.6.1/Claddis/man/plot_rates_tree.Rd |only Claddis-0.6.1/Claddis/man/prune_cladistic_matrix.Rd |only Claddis-0.6.1/Claddis/man/read_nexus_matrix.Rd |only Claddis-0.6.1/Claddis/man/safe_taxonomic_reduction.Rd |only Claddis-0.6.1/Claddis/man/safe_taxonomic_reinsertion.Rd |only Claddis-0.6.1/Claddis/man/test_rates.Rd |only Claddis-0.6.1/Claddis/man/trim_matrix.Rd |only Claddis-0.6.1/Claddis/man/write_nexus_matrix.Rd |only Claddis-0.6.1/Claddis/man/write_tnt_matrix.Rd |only Claddis-0.6.1/Claddis/tests |only 154 files changed, 208 insertions(+), 182 deletions(-)
Title: Tools for Case 1 Best-Worst Scaling (MaxDiff) Designs
Description: Tools to design best-worst scaling designs (i.e., balanced incomplete block designs) and
to analyze data from these designs, using aggregate and individual methods such as: difference
scores, Louviere, Lings, Islam, Gudergan, & Flynn (2013) <doi:10.1016/j.ijresmar.2012.10.002>;
analytical estimation, Lipovetsky & Conklin (2014) <doi:10.1016/j.jocm.2014.02.001>; empirical
Bayes, Lipovetsky & Conklin (2015) <doi:10.1142/S1793536915500028>; Elo, Hollis (2018)
<doi:10.3758/s13428-017-0898-2>; and network-based measures.
Author: Mark White [aut, cre]
Maintainer: Mark White <markhwhiteii@gmail.com>
Diff between bwsTools versions 1.1.1 dated 2020-06-14 and 1.2.0 dated 2020-08-26
DESCRIPTION | 10 MD5 | 38 +- NEWS.md | 2 R/diffscoring.R | 2 R/e_bayescoring.R | 6 R/eloscoring.R | 2 R/get_M.R | 15 R/get_checks.R | 57 ++- R/get_eloscores.R | 8 R/make_bibd.R | 9 R/prscoring.R | 2 R/walkscoring.R | 2 build/vignette.rds |binary inst/doc/aggregate.html | 468 +++++++++++++++++++++-------- inst/doc/individual.html | 354 +++++++++++++++++---- inst/doc/tidying_data.html | 580 ++++++++++++++++++++++++------------ man/e_bayescoring.Rd | 13 man/make_bibd.Rd | 8 tests/testthat/test_e_bayescoring.R | 4 tests/testthat/test_get_checks.R | 45 ++ 20 files changed, 1186 insertions(+), 439 deletions(-)
Title: Bayesian Multi-Trait Multi-Environment for Genomic Selection
Analysis
Description: Genomic selection and prediction models with the capacity to use multiple traits and environments, through ready-to-use Bayesian models. It consists a group of functions
that help to create regression models for some genomic models proposed by Montesinos-López, et al. (2016) <doi:10.1534/g3.116.032359>
also in Montesinos-López et al. (2018) <doi:10.1534/g3.118.200728> and Montesinos-López et al. (2018) <doi:10.2134/agronj2018.06.0362>.
Author: Francisco Javier Luna-Vazquez [aut, cre]
(<https://orcid.org/0000-0002-5370-7152>),
Fernando H. Toledo [aut],
Osval Antonio Montesinos-Lopez [aut]
(<https://orcid.org/0000-0002-3973-6547>),
Abelardo Montesinos-Lopez [aut],
Jose Crossa [aut] (<https://orcid.org/0000-0001-9429-5855>)
Maintainer: Francisco Javier Luna-Vazquez <frahik@gmail.com>
Diff between BMTME versions 1.0.15 dated 2020-05-26 and 1.0.19 dated 2020-08-26
DESCRIPTION | 14 +++++++------- MD5 | 13 +++++++------ NAMESPACE | 1 + NEWS.md | 17 +++++++++++++++++ R/BMTME_Package.R | 1 + R/RandomPartition.R | 12 ++++++------ tests/testthat/Rplots.pdf |only tests/testthat/test.R | 21 ++++++++++++--------- 8 files changed, 51 insertions(+), 28 deletions(-)
Title: Extracts the Backbone from Weighted Graphs
Description: Provides methods for extracting from a weighted graph
a binary or signed backbone that retains only the significant edges.
The user may input a weighted graph, or a bipartite graph
from which a weighted graph is first constructed via projection.
Backbone extraction methods include the stochastic degree sequence model (Neal, Z. P. (2014). <doi:10.1016/j.socnet.2014.06.001>),
hypergeometric model (Neal, Z. (2013). <doi:10.1007/s13278-013-0107-y>),
the fixed degree sequence model (Zweig, K. A., and Kaufmann, M. (2011). <doi:10.1007/s13278-011-0021-0>),
as well as a universal threshold method.
Author: Rachel Domagalski [aut, cre],
Zachary Neal [aut],
Bruce Sagan [aut]
Maintainer: Rachel Domagalski <domagal9@msu.edu>
Diff between backbone versions 1.2.1 dated 2020-07-03 and 1.2.2 dated 2020-08-26
DESCRIPTION | 6 - MD5 | 32 ++++---- NEWS.md | 9 ++ R/backbone.extract.R | 2 R/fdsm.R | 3 R/hyperg.R | 2 R/model.helpers.R | 21 +++++ R/sdsm.R | 15 +++- R/universal.R | 103 +++++++++++++++++++-------- README.md | 28 ++++--- inst/CITATION | 16 +++- inst/doc/backbone.html | 135 ++++++++++++++++++------------------ man/class.convert.Rd | 4 - man/hyperg.Rd | 2 man/sdsm.Rd | 4 - man/universal.Rd | 15 ++-- tests/testthat/test-class.convert.R | 16 ++-- 17 files changed, 256 insertions(+), 157 deletions(-)
Title: Pharmacometric and Pharmacokinetic Toolkit
Description: Pharmacometric tools for common data analytical tasks; closed-form solutions for calculating concentrations at given
times after dosing based on compartmental PK models (1-compartment, 2-compartment and 3-compartment, covering infusions, zero-
and first-order absorption, and lag times, after single doses and at steady state, per Bertrand & Mentre (2008)
<http://lixoft.com/wp-content/uploads/2016/03/PKPDlibrary.pdf>); parametric simulation from NONMEM-generated parameter estimates
and other output; and parsing, tabulating and plotting results generated by Perl-speaks-NONMEM (PsN).
Author: Justin Wilkins [aut, cre] (<https://orcid.org/0000-0002-7099-9396>),
Bill Denney [aut] (<https://orcid.org/0000-0002-5759-428X>),
Rik Schoemaker [aut],
Leonid Gibiansky [ctb],
Andrew Hooker [ctb],
E. Niclas Jonsson [ctb],
Mats O. Karlsson [ctb],
John Johnson [ctb]
Maintainer: Justin Wilkins <justin.wilkins@occams.com>
Diff between pmxTools versions 1.0 dated 2020-01-10 and 1.2.1 dated 2020-08-26
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Title: Plot an Epidemic Curve
Description: Creates simple or stacked epidemic curves for hourly, daily, weekly or monthly outcome data.
Author: Jean Pierre Decorps [aut, cre]
Maintainer: Jean Pierre Decorps <jean.pierre.decorps@gmail.com>
Diff between EpiCurve versions 2.3-1 dated 2020-04-11 and 2.4-1 dated 2020-08-26
DESCRIPTION | 9 ++++---- MD5 | 18 ++++++++-------- NAMESPACE | 2 - R/EpiCurve..R | 52 ++++++++++++++++++++++++++++++++++++++----------- README.md | 14 ++++++++++++- inst/doc/EpiCurve.R | 18 ++++++++++++++++ inst/doc/EpiCurve.Rmd | 37 ++++++++++++++++++++++++++++++---- inst/doc/EpiCurve.pdf |binary man/EpiCurve.Rd | 4 ++- vignettes/EpiCurve.Rmd | 37 ++++++++++++++++++++++++++++++---- 10 files changed, 153 insertions(+), 38 deletions(-)
Title: Find, Download and Process Sentinel-2 Data
Description: Functions to download Sentinel-2 optical images
and perform preliminary processing operations.
'sen2r' provides the instruments required to easily perform
(and eventually automate) the steps necessary to build a complete
Sentinel-2 processing chain.
A Graphical User Interface to facilitate data processing is also provided.
For additional documentation refer to the following article:
Ranghetti et al. (2020) <doi:10.1016/j.cageo.2020.104473>.
Author: Luigi Ranghetti [aut, cre] (<https://orcid.org/0000-0001-6207-5188>),
Lorenzo Busetto [aut] (<https://orcid.org/0000-0001-9634-6038>)
Maintainer: Luigi Ranghetti <luigi@ranghetti.info>
Diff between sen2r versions 1.3.7 dated 2020-07-06 and 1.3.8 dated 2020-08-26
DESCRIPTION | 6 MD5 | 90 ++++++------ NEWS.md | 19 ++ R/build_example_param_file.R | 2 R/check_gui_deps.R | 4 R/gdal_warp.R | 7 R/install_sen2cor.R | 4 R/list_indices.R | 2 R/s2_calcindices.R | 2 R/s2_download.R | 119 +++++++++++++--- R/s2_gui.R | 2 R/s2_list.R | 219 +++++++++++++++++++----------- R/s2_order.R | 44 ++++-- R/s2_tiles.R | 9 - R/safe_is_online.R | 2 R/safelist-class.R | 6 R/sen2cor.R | 135 ++++++++++++++++-- R/sen2r.R | 12 + inst/doc/docker.Rmd | 2 inst/doc/docker.html | 2 inst/doc/installation.Rmd | 58 +++---- inst/doc/installation.html | 58 +++---- inst/doc/sen2r_gui.Rmd | 12 - inst/doc/sen2r_gui.html | 12 - man/install_sen2cor.Rd | 4 man/list_indices.Rd | 2 man/s2_calcindices.Rd | 2 man/s2_download.Rd | 8 - man/s2_list.Rd | 13 + man/s2_order.Rd | 2 man/s2_tiles.Rd | 2 man/sen2cor.Rd | 11 + man/sen2r.Rd | 2 tests/testthat/test-gdal_warp.R | 30 ++++ tests/testthat/test-s2_download.R | 46 +++--- tests/testthat/test-s2_list.R | 14 + tests/testthat/test-sen2cor.R | 58 +++---- tests/testthat/test-sen2r-01_merge.R | 10 - tests/testthat/test-sen2r-02_warp.R | 28 +-- tests/testthat/test-sen2r-03_mask.R | 61 ++++---- tests/testthat/test-sen2r-04_indices.R | 10 - tests/testthat/test-sen2r-05_rgb.R | 10 - tests/testthat/test-sen2r-06_ignorelist.R | 6 vignettes/docker.Rmd | 2 vignettes/installation.Rmd | 58 +++---- vignettes/sen2r_gui.Rmd | 12 - 46 files changed, 789 insertions(+), 430 deletions(-)
Title: Tools for Customer Lifetime Value Estimation
Description: Probabilistic latent customer attrition models (also known as "buy-'til-you-die models") are used to
predict future purchase behavior of customers. This package includes fast and accurate implementations of various
probabilistic latent customer attrition models for non-contractual settings (e.g., retail business) with and
without time-invariant and time-varying covariates. Currently, the package includes the Pareto/NBD model
(Pareto/Negative-Binomial-Distribution), the BG/NBD mode (Beta-Gamma/Negative-Binomial-Distribution) and the GGom/NBD
(Gamma-Gompertz/Negative-Binomial-Distribution) for the purchase and the attrition processes as well as the Gamma/Gamma model
for the spending process. For reference to the Pareto/NBD model, see Schmittlein DC, Morrison DG, Colombo R (1987) <doi:10.1287/mnsc.33.1.1>,
for the BG/NBD model, see Fader PS, Hardie BG, Lee K (2005) <doi:10.1287/mksc.1040.0098> and for the GGom/NBD model see Bemmaor AC, Glady N (2012)
<doi:10.1287/mnsc.1110.1461>. For reference to the Gamma/Gamma model, see Fader PS, Hardie BG, Lee K (2005) <doi:10.1509/jmkr.2005.42.4.415>.
Author: Patrick Bachmann [cre, aut],
Jeffrey Naef [aut],
Patrik Schilter [aut],
Markus Meierer [aut],
Niels Kuebler [aut]
Maintainer: Patrick Bachmann <patrick.bachmann@business.uzh.ch>
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CLVTools-0.7.0/CLVTools/src/pnbd_CET.cpp | 25 CLVTools-0.7.0/CLVTools/src/pnbd_CET.h |only CLVTools-0.7.0/CLVTools/src/pnbd_DERT.cpp | 9 CLVTools-0.7.0/CLVTools/src/pnbd_DERT.h |only CLVTools-0.7.0/CLVTools/src/pnbd_LL.cpp | 186 +- CLVTools-0.7.0/CLVTools/src/pnbd_LL_ind.h | 36 CLVTools-0.7.0/CLVTools/src/pnbd_PAlive.cpp | 19 CLVTools-0.7.0/CLVTools/src/pnbd_PAlive.h | 20 CLVTools-0.7.0/CLVTools/src/pnbd_expectation.cpp |only CLVTools-0.7.0/CLVTools/src/pnbd_expectation.h |only CLVTools-0.7.0/CLVTools/tests/testthat.R | 1 CLVTools-0.7.0/CLVTools/tests/testthat/helper_inputchecks_single_logical.R | 120 + CLVTools-0.7.0/CLVTools/tests/testthat/helper_s3_fitted.R | 38 CLVTools-0.7.0/CLVTools/tests/testthat/helper_s3_fitted_plot.R | 25 CLVTools-0.7.0/CLVTools/tests/testthat/helper_s3_fitted_predict.R | 239 +- CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_correctness_clvfitted.R |only CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_correctness_spending.R |only CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_correctness_transactions.R |only CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_dyncov.R | 71 CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_inputchecks_nocov.R | 241 +- CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_inputchecks_predict_plot.R |only CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_inputchecks_staticcov.R | 18 CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_runability_clvfitted.R |only CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_runability_common.R | 77 CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_runability_nocov.R | 118 - CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_runability_spending.R |only CLVTools-0.7.0/CLVTools/tests/testthat/helper_testthat_runability_staticcov.R | 251 +- CLVTools-0.7.0/CLVTools/tests/testthat/test_consistency_pnbd.R | 76 CLVTools-0.7.0/CLVTools/tests/testthat/test_correctness_bgnbd.R | 103 - CLVTools-0.7.0/CLVTools/tests/testthat/test_correctness_clvdata_clvdata.R | 32 CLVTools-0.7.0/CLVTools/tests/testthat/test_correctness_clvdata_setdynamiccov.R | 45 CLVTools-0.7.0/CLVTools/tests/testthat/test_correctness_clvdata_setstaticcov.R | 33 CLVTools-0.7.0/CLVTools/tests/testthat/test_correctness_gg.R |only CLVTools-0.7.0/CLVTools/tests/testthat/test_correctness_ggomnbd.R | 141 - CLVTools-0.7.0/CLVTools/tests/testthat/test_correctness_pnbd.R | 102 - CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_bgnbd_nocov.R | 10 CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_clvdata_clvdata.R | 6 CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_gg.R |only CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_ggomnbd_nocov.R | 32 CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_plot_spending.R |only CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_plot_transactions.R |only CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_pnbd_nocov.R | 10 CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_predict_spending.R |only CLVTools-0.7.0/CLVTools/tests/testthat/test_inputchecks_predict_transactions.R |only CLVTools-0.7.0/CLVTools/tests/testthat/test_runability_bgnbd_nocov.R | 1 CLVTools-0.7.0/CLVTools/tests/testthat/test_runability_gg.R |only CLVTools-0.7.0/CLVTools/tests/testthat/test_runability_ggomnbd_nocov.R | 1 CLVTools-0.7.0/CLVTools/tests/testthat/test_runability_pnbd_nocov.R | 1 CLVTools-0.7.0/CLVTools/vignettes/CLVTools.Rmd | 138 + CLVTools-0.7.0/CLVTools/vignettes/bibliography.bib | 6 CLVTools-0.7.0/CLVTools/vignettes/internal_docu/Extensions.md | 189 -- CLVTools-0.7.0/CLVTools/vignettes/internal_docu/uml_class_clvtools.pdf |binary CLVTools-0.7.0/CLVTools/vignettes/internal_docu/uml_class_clvtools.uxf | 927 ++++++---- CLVTools-0.7.0/CLVTools/vignettes/internal_docu/uml_sd_clvtools_estimate.pdf |binary CLVTools-0.7.0/CLVTools/vignettes/internal_docu/uml_sd_clvtools_estimate.uxf | 2 CLVTools-0.7.0/CLVTools/vignettes/internal_docu/uml_sd_clvtools_predict.pdf |binary CLVTools-0.7.0/CLVTools/vignettes/internal_docu/uml_sd_clvtools_predict.uxf | 4 210 files changed, 3766 insertions(+), 2702 deletions(-)
Title: Create Cartograms with R
Description: Construct continuous and non-contiguous area cartograms.
Author: Sebastian Jeworutzki [aut, cre]
(<https://orcid.org/0000-0002-2671-5253>),
Timothee Giraud [ctb],
Nicolas Lambert [ctb],
Roger Bivand [cph],
Edzer Pebesma [cph],
Jakub Nowosad [ctb] (<https://orcid.org/0000-0002-1057-3721>)
Maintainer: Sebastian Jeworutzki <sebastian.jeworutzki@ruhr-uni-bochum.de>
Diff between cartogram versions 0.2.0 dated 2019-12-07 and 0.2.2 dated 2020-08-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 1 + R/cartogram_ncont.R | 6 +++--- README.md | 1 + 5 files changed, 12 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-20 1.1
2020-01-29 1.0.5.1
2019-05-28 1.0.5
2018-07-11 1.0.4
2018-07-04 1.0.3
2018-06-11 0.6-2.1
2014-12-09 0.6-2
2014-03-27 0.6-1
2013-12-18 0.6
2012-04-04 0.5-4
2011-01-03 0.5-2
2010-11-29 0.5-1
2010-11-04 0.5
2009-11-12 0.4-7
2009-09-03 0.4-6
2009-06-14 0.4-3
2009-04-14 0.4-0
2009-02-04 0.3-7
2009-02-01 0.3-6
2008-12-18 0.3-5
2008-10-30 0.3-3
2008-07-15 0.3-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-19 0.0.3
2017-01-25 0.0.2
2016-11-19 0.0.1
Title: Export Data Frames to Excel 'xlsx' Format
Description: Zero-dependency data frame to xlsx exporter based on 'libxlsxwriter'.
Fast and no Java or Excel required.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
John McNamara [cph] (Author of libxlsxwriter (see AUTHORS and COPYRIGHT
files for details))
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between writexl versions 1.3 dated 2020-05-05 and 1.3.1 dated 2020-08-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ tests/testthat/test-types.R | 1 + 4 files changed, 10 insertions(+), 6 deletions(-)
Title: Multiscale Change-Point Inference
Description: Allows fitting of step-functions to univariate serial data where neither the number of jumps nor their positions is known by implementing the multiscale regression estimators SMUCE (K. Frick, A. Munk and H. Sieling, 2014) <doi:10.1111/rssb.12047> and HSMUCE (F. Pein, H. Sieling and A. Munk, 2017) <doi:10.1111/rssb.12202>. In addition, confidence intervals for the change-point locations and bands for the unknown signal can be obtained.
Author: Pein Florian [aut, cre],
Thomas Hotz [aut],
Hannes Sieling [aut],
Timo Aspelmeier [ctb]
Maintainer: Pein Florian <fp366@cam.ac.uk>
Diff between stepR versions 2.1-0 dated 2020-08-04 and 2.1-1 dated 2020-08-26
ChangeLog | 6 ++++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- inst/doc/StepR.pdf |binary src/DataLR.cpp | 6 +++--- tests/testthat/test-computeBounds.R | 18 +++++++++--------- 6 files changed, 26 insertions(+), 20 deletions(-)
Title: Squared Extrapolation Methods for Accelerating EM-Like Monotone
Algorithms
Description: Algorithms for accelerating the convergence of slow,
monotone sequences from smooth, contraction mapping such as the
EM algorithm. It can be used to accelerate any smooth, linearly
convergent acceleration scheme. A tutorial style introduction
to this package is available in a vignette on the CRAN download
page or, when the package is loaded in an R session, with
vignette("SQUAREM"). Refer to the J Stat Software article: <doi:10.18637/jss.v092.i07>.
Author: Ravi Varadhan
Maintainer: Ravi Varadhan <ravi.varadhan@jhu.edu>
Diff between SQUAREM versions 2020.3 dated 2020-06-05 and 2020.4 dated 2020-08-26
DESCRIPTION | 11 +++++------ MD5 | 8 ++++---- NEWS | 3 +++ R/squarem.R | 4 ++-- inst/doc/SQUAREM.pdf |binary 5 files changed, 14 insertions(+), 12 deletions(-)
Title: Geographically Weighted Regression
Description: Functions for computing geographically weighted
regressions are provided, based on work by Chris
Brunsdon, Martin Charlton and Stewart Fotheringham.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Danlin Yu [aut],
Tomoki Nakaya [ctb],
Miquel-Angel Garcia-Lopez [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spgwr versions 0.6-33 dated 2020-02-11 and 0.6-34 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary data/gSRouter.rda |binary data/georgia.rda |binary inst/doc/GWR.R | 1 - inst/doc/GWR.pdf |binary 7 files changed, 10 insertions(+), 11 deletions(-)
Title: Drag-and-Drop in 'shiny' Apps with 'SortableJS'
Description: Enables drag-and-drop behaviour in Shiny apps, by exposing the
functionality of the 'SortableJS' <https://sortablejs.github.io/Sortable/>
JavaScript library as an 'htmlwidget'.
You can use this in Shiny apps and widgets, 'learnr' tutorials as well as
R Markdown. In addition, provides a custom 'learnr' question type -
'question_rank()' - that allows ranking questions with drag-and-drop.
Author: Andrie de Vries [cre, aut],
Barret Schloerke [aut],
Kenton Russell [aut, ccp] (Original author),
RStudio [cph, fnd],
Lebedev Konstantin [cph] ('SortableJS',
https://sortablejs.github.io/Sortable/)
Maintainer: Andrie de Vries <apdevries@gmail.com>
Diff between sortable versions 0.4.2 dated 2019-12-01 and 0.4.3 dated 2020-08-26
sortable-0.4.2/sortable/inst/doc/shiny_apps.R |only sortable-0.4.2/sortable/inst/doc/shiny_apps.Rmd |only sortable-0.4.2/sortable/inst/doc/shiny_apps.html |only sortable-0.4.2/sortable/man/figures/sortable-logo.png |only sortable-0.4.2/sortable/vignettes/shiny_apps.Rmd |only sortable-0.4.3/sortable/DESCRIPTION | 19 sortable-0.4.3/sortable/MD5 | 98 - sortable-0.4.3/sortable/NEWS.md | 25 sortable-0.4.3/sortable/R/bucket_list.R | 3 sortable-0.4.3/sortable/R/js.R | 7 sortable-0.4.3/sortable/R/question_rank.R | 6 sortable-0.4.3/sortable/R/rank_list.R | 5 sortable-0.4.3/sortable/R/sortable_options.R | 31 sortable-0.4.3/sortable/build/vignette.rds |binary sortable-0.4.3/sortable/inst/WORDLIST | 12 sortable-0.4.3/sortable/inst/doc/built_in.R |only sortable-0.4.3/sortable/inst/doc/built_in.Rmd |only sortable-0.4.3/sortable/inst/doc/built_in.html |only sortable-0.4.3/sortable/inst/doc/cloning.R |only sortable-0.4.3/sortable/inst/doc/cloning.Rmd |only sortable-0.4.3/sortable/inst/doc/cloning.html |only sortable-0.4.3/sortable/inst/doc/novel_solutions.R | 6 sortable-0.4.3/sortable/inst/doc/novel_solutions.html | 167 +- sortable-0.4.3/sortable/inst/doc/understanding_sortable_js.R | 13 sortable-0.4.3/sortable/inst/doc/understanding_sortable_js.Rmd | 67 sortable-0.4.3/sortable/inst/doc/understanding_sortable_js.html | 741 +++++----- sortable-0.4.3/sortable/inst/doc/using_custom_css.R |only sortable-0.4.3/sortable/inst/doc/using_custom_css.Rmd |only sortable-0.4.3/sortable/inst/doc/using_custom_css.html |only sortable-0.4.3/sortable/inst/examples/example_bucket_list.R | 48 sortable-0.4.3/sortable/inst/examples/example_rank_list.R | 12 sortable-0.4.3/sortable/inst/examples/example_rank_list_multidrag.R |only sortable-0.4.3/sortable/inst/examples/example_rank_list_swap.R |only sortable-0.4.3/sortable/inst/examples/example_sortable_js.R | 28 sortable-0.4.3/sortable/inst/examples/example_sortable_js_capture.R |only sortable-0.4.3/sortable/inst/htmlwidgets/lib/sortable/sortable.js | 396 +++-- sortable-0.4.3/sortable/inst/htmlwidgets/plugins/sortable-rstudio/rank_list.css | 4 sortable-0.4.3/sortable/inst/htmlwidgets/sortable.yaml | 2 sortable-0.4.3/sortable/inst/shiny-examples/clone_remove |only sortable-0.4.3/sortable/inst/shiny-examples/custom_css |only sortable-0.4.3/sortable/inst/shiny-examples/drag_vars_to_plot/app.R | 6 sortable-0.4.3/sortable/inst/shiny-examples/rank_list/app.R | 85 - sortable-0.4.3/sortable/inst/tutorials/question_rank/question_rank.Rmd | 6 sortable-0.4.3/sortable/inst/tutorials/question_rank/question_rank.html | 33 sortable-0.4.3/sortable/man/add_rank_list.Rd | 54 sortable-0.4.3/sortable/man/bucket_list.Rd | 73 sortable-0.4.3/sortable/man/chain_js_events.Rd | 49 sortable-0.4.3/sortable/man/figures/logo.png |only sortable-0.4.3/sortable/man/figures/logo.svg | 552 +++---- sortable-0.4.3/sortable/man/question_rank.Rd | 20 sortable-0.4.3/sortable/man/rank_list.Rd | 52 sortable-0.4.3/sortable/man/render_sortable.Rd | 38 sortable-0.4.3/sortable/man/sortable.Rd | 8 sortable-0.4.3/sortable/man/sortable_js.Rd | 128 - sortable-0.4.3/sortable/man/sortable_js_capture_input.Rd | 120 + sortable-0.4.3/sortable/man/sortable_options.Rd | 55 sortable-0.4.3/sortable/man/sortable_output.Rd | 44 sortable-0.4.3/sortable/vignettes/built_in.Rmd |only sortable-0.4.3/sortable/vignettes/cloning.Rmd |only sortable-0.4.3/sortable/vignettes/figures/clone_delete.gif |only sortable-0.4.3/sortable/vignettes/understanding_sortable_js.Rmd | 67 sortable-0.4.3/sortable/vignettes/using_custom_css.Rmd |only 62 files changed, 1805 insertions(+), 1275 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.5.1 dated 2020-07-17 and 1.5.3 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/sysdata.rda |binary README.md | 2 +- inst/doc/vignette.html | 8 ++++---- tests/testthat/test-1-data-structures.R | 19 +++++++++++++------ 7 files changed, 36 insertions(+), 21 deletions(-)
Title: Clustering with Matrix Gaussian and Matrix Transformation
Mixture Models
Description: Provides matrix Gaussian mixture models, matrix transformation mixture models and their model-based clustering results. The parsimonious models of the mean matrices and variance covariance matrices are implemented with a total of 196 variations.
Author: Xuwen Zhu [aut, cre],
Volodymyr Melnykov [aut],
Shuchismita Sarkar [ctb],
Michael Hutt [ctb, cph],
Stephen Moshier [ctb, cph],
Rouben Rostamian [ctb, cph],
Carl Edward Rasmussen [ctb, cph],
Dianne Cook [ctb, cph]
Maintainer: Xuwen Zhu <xzhu20@cba.ua.edu>
Diff between MatTransMix versions 0.1.10 dated 2020-06-28 and 0.1.11 dated 2020-08-26
DESCRIPTION | 9 - MD5 | 31 +++- NAMESPACE | 2 NEWS | 6 R/libMatTransFull.R | 324 ++++++++++++++++++++++++++++++++++----------------- demo/00Index | 10 + demo/EMalgorithm1.R | 2 demo/EMalgorithm2.R | 2 demo/EMdemoCrime1.R |only demo/EMdemoCrime2.R |only demo/EMdemoCrime3.R |only demo/EMdemoCrime4.R |only demo/EMdemoIMDb1.R |only demo/EMdemoIMDb2.R |only demo/EMdemoIMDb3.R |only demo/EMdemoIris.R |only demo/Initdemo.R |only man/MatTrans.EM.Rd | 21 ++- man/MatTrans.init.Rd | 10 + man/print.summary.Rd | 13 ++ src/libFull.c | 150 +++++++++++++---------- 21 files changed, 394 insertions(+), 186 deletions(-)
Title: Basic Pipe and Open Channel Hydraulics
Description: Functions for basic hydraulic calculations related to
water flow in circular pipes both flowing full (under pressure), and
partially full (gravity flow), and trapezoidal open channels. For
pressure flow this includes friction loss calculations by solving
the Darcy-Weisbach equation for head loss, flow or diameter, and
plotting a Moody diagram. The Darcy-Weisbach friction factor is
calculated using the Colebrook (or Colebrook-White equation),
the basis of the Moody diagram, the original citation being
Colebrook (1939) <doi:10.1680/ijoti.1939.13150>. For gravity flow, the
Manning equation is used, again solving for missing parameters. The
derivation of and solutions using the Darcy-Weisbach equation and the
Manning equation are outlined in many fluid mechanics texts such as
Finnemore and Franzini (2002, ISBN:978-0072432022). For the Manning equation
solutions, this package uses modifications of original code from the 'iemisc'
package by Irucka Embry.
Author: Ed Maurer [aut, cre], Irucka Embry [aut, ctb] (iemisc code)
Maintainer: Ed Maurer <emaurer@scu.edu>
Diff between hydraulics versions 0.2.1 dated 2020-08-02 and 0.2.2 dated 2020-08-26
DESCRIPTION | 14 +++--- MD5 | 45 ++++++++++--------- NEWS.md | 6 ++ R/darcy_weisbach.R | 64 ++++++++++++++++++++++----- R/f_colebrook.R | 17 ++++++- R/manningc.R | 53 ++++++++++++++++++---- R/manningt.R | 74 ++++++++++++++++++++++---------- R/spec_energy_trap.R | 35 +++++++++++++-- R/water_properties.R | 32 ++++++++++--- R/xc_circle.R | 24 ++++++++-- R/xc_trap.R | 26 ++++++++--- README.md | 17 +++---- build |only inst |only man/darcyweisbach.Rd | 6 ++ man/figures/README-xc-plot-circle-1.png |binary man/figures/README-xc-plot-trap-1.png |binary man/manningc.Rd | 10 +++- man/manningt.Rd | 10 +++- man/spec_energy_trap.Rd | 3 + man/waterprops.Rd | 11 +++- man/xc_circle.Rd | 8 ++- man/xc_trap.Rd | 8 ++- vignettes |only 24 files changed, 346 insertions(+), 117 deletions(-)
Title: Multiple Locus Association Mapping on a Genome-Wide Scale
Description: An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
Author: Andrew George [aut, cre],
Joshua Bowden [ctb],
Ryan Stephenson [ctb],
Hyun Kang [ctb],
Noah Zaitlen [ctb],
Claire Wade [ctb],
Andrew Kirby [ctb],
David Heckerman [ctb],
Mark Daly [ctb],
Eleazar Eskin [ctb]
Maintainer: Andrew George <andrew.george@csiro.au>
Diff between Eagle versions 2.3 dated 2020-07-22 and 2.4 dated 2020-08-26
DESCRIPTION | 8 MD5 | 16 - NAMESPACE | 3 NEWS | 7 R/PlotAM.R | 388 +++++++++++++++++++++++++--------------------- R/onAttach.R | 2 R/summary_am.R | 4 inst/shiny_app/app.R | 424 +++++++++++++++++++++++++++++++-------------------- man/PlotAM.Rd | 29 ++- 9 files changed, 527 insertions(+), 354 deletions(-)
Title: Article Formats for R Markdown
Description: A suite of custom R Markdown formats and templates for
authoring journal articles and conference submissions.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
R Foundation [aut, cph],
Hadley Wickham [aut],
Journal of Statistical Software [aut, cph],
RStudio [cph],
Ramnath Vaidyanathan [aut, cph],
Association for Computing Machinery [aut, cph],
Carl Boettiger [aut, cph],
Elsevier [aut, cph],
Karl Broman [aut, cph],
Kirill Mueller [aut, cph],
Bastiaan Quast [aut, cph],
Randall Pruim [aut, cph],
Ben Marwick [aut, cph],
Charlotte Wickham [aut, cph],
Oliver Keyes [aut, cph],
Miao Yu [aut, cph],
Daniel Emaasit [aut, cph],
Thierry Onkelinx [aut, cph],
Alessandro Gasparini [aut, cph]
(<https://orcid.org/0000-0002-8319-7624>),
Marc-Andre Desautels [aut, cph],
Dominik Leutnant [aut, cph] (<https://orcid.org/0000-0003-3293-2315>),
MDPI [aut, cph],
Taylor and Francis [aut, cph],
Oğuzhan Öğreden [aut] (<https://orcid.org/0000-0002-9949-3348>),
Dalton Hance [aut],
Daniel Nüst [aut, cph] (<https://orcid.org/0000-0002-0024-5046>),
Petter Uvesten [aut, cph],
Elio Campitelli [aut, cph] (<https://orcid.org/0000-0002-7742-9230>),
John Muschelli [aut, cph] (<https://orcid.org/0000-0001-6469-1750>),
Alex Hayes [aut] (<https://orcid.org/0000-0002-4985-5160>),
Zhian N. Kamvar [aut, cph] (<https://orcid.org/0000-0003-1458-7108>),
Noam Ross [aut, cph] (<https://orcid.org/0000-0002-2136-0000>),
Robrecht Cannoodt [aut, cph] (<https://orcid.org/0000-0003-3641-729X>,
rcannood),
Duncan Luguern [aut],
David M. Kaplan [aut, ctb] (<https://orcid.org/0000-0001-6087-359X>,
dmkaplan2000),
Sebastian Kreutzer [aut] (<https://orcid.org/0000-0002-0734-2199>),
Shixiang Wang [aut, ctb] (<https://orcid.org/0000-0001-9855-7357>),
Jay Hesselberth [aut, ctb] (<https://orcid.org/0000-0002-6299-179X>),
Alfredo Hernández [ctb] (<https://orcid.org/0000-0002-2660-4545>),
Christophe Dervieux [aut] (<https://orcid.org/0000-0003-4474-2498>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rticles versions 0.14 dated 2020-02-05 and 0.15 dated 2020-08-26
rticles-0.14/rticles/inst/rmarkdown/templates/acm_article |only rticles-0.14/rticles/inst/rmarkdown/templates/acs_article |only rticles-0.14/rticles/inst/rmarkdown/templates/aea_article |only rticles-0.14/rticles/inst/rmarkdown/templates/agu_article |only rticles-0.14/rticles/inst/rmarkdown/templates/amq_article |only rticles-0.14/rticles/inst/rmarkdown/templates/ams_article |only rticles-0.14/rticles/inst/rmarkdown/templates/asa_article |only rticles-0.14/rticles/inst/rmarkdown/templates/biometrics_article |only rticles-0.14/rticles/inst/rmarkdown/templates/copernicus_article |only rticles-0.14/rticles/inst/rmarkdown/templates/ctex/resources |only rticles-0.14/rticles/inst/rmarkdown/templates/elsevier_article |only rticles-0.14/rticles/inst/rmarkdown/templates/frontiers_article |only rticles-0.14/rticles/inst/rmarkdown/templates/ieee_article |only rticles-0.14/rticles/inst/rmarkdown/templates/joss_article |only rticles-0.14/rticles/inst/rmarkdown/templates/jss_article |only rticles-0.14/rticles/inst/rmarkdown/templates/mdpi_article |only rticles-0.14/rticles/inst/rmarkdown/templates/mnras_article |only rticles-0.14/rticles/inst/rmarkdown/templates/oup_article |only rticles-0.14/rticles/inst/rmarkdown/templates/peerj_article |only rticles-0.14/rticles/inst/rmarkdown/templates/plos_article |only rticles-0.14/rticles/inst/rmarkdown/templates/pnas_article |only rticles-0.14/rticles/inst/rmarkdown/templates/rjournal_article |only rticles-0.14/rticles/inst/rmarkdown/templates/rsos_article |only rticles-0.14/rticles/inst/rmarkdown/templates/rss_article |only rticles-0.14/rticles/inst/rmarkdown/templates/sage_article |only rticles-0.14/rticles/inst/rmarkdown/templates/sim_article |only rticles-0.14/rticles/inst/rmarkdown/templates/springer_article |only rticles-0.14/rticles/inst/rmarkdown/templates/tf_article |only rticles-0.15/rticles/DESCRIPTION | 27 rticles-0.15/rticles/MD5 | 475 +++++----- rticles-0.15/rticles/NAMESPACE | 4 rticles-0.15/rticles/NEWS.md | 37 rticles-0.15/rticles/R/article.R | 99 +- rticles-0.15/rticles/R/copernicus_article.R | 9 rticles-0.15/rticles/R/ieee_article.R | 2 rticles-0.15/rticles/R/joss_article.R | 4 rticles-0.15/rticles/R/jss_article.R | 25 rticles-0.15/rticles/R/rjournal_article.R | 106 ++ rticles-0.15/rticles/R/rsos_article.R | 2 rticles-0.15/rticles/R/rss_article.R | 6 rticles-0.15/rticles/R/utils.R | 54 + rticles-0.15/rticles/README.md | 116 +- rticles-0.15/rticles/inst/rmarkdown/lua |only rticles-0.15/rticles/inst/rmarkdown/templates/acm |only rticles-0.15/rticles/inst/rmarkdown/templates/acs |only rticles-0.15/rticles/inst/rmarkdown/templates/aea |only rticles-0.15/rticles/inst/rmarkdown/templates/agu |only rticles-0.15/rticles/inst/rmarkdown/templates/amq |only rticles-0.15/rticles/inst/rmarkdown/templates/ams |only rticles-0.15/rticles/inst/rmarkdown/templates/arxiv |only rticles-0.15/rticles/inst/rmarkdown/templates/asa |only rticles-0.15/rticles/inst/rmarkdown/templates/bioinformatics |only rticles-0.15/rticles/inst/rmarkdown/templates/biometrics |only rticles-0.15/rticles/inst/rmarkdown/templates/copernicus |only rticles-0.15/rticles/inst/rmarkdown/templates/ctex/skeleton/skeleton.Rmd | 9 rticles-0.15/rticles/inst/rmarkdown/templates/elsevier |only rticles-0.15/rticles/inst/rmarkdown/templates/frontiers |only rticles-0.15/rticles/inst/rmarkdown/templates/ieee |only rticles-0.15/rticles/inst/rmarkdown/templates/joss |only rticles-0.15/rticles/inst/rmarkdown/templates/jss |only rticles-0.15/rticles/inst/rmarkdown/templates/mdpi |only rticles-0.15/rticles/inst/rmarkdown/templates/mnras |only rticles-0.15/rticles/inst/rmarkdown/templates/oup |only rticles-0.15/rticles/inst/rmarkdown/templates/peerj |only rticles-0.15/rticles/inst/rmarkdown/templates/plos |only rticles-0.15/rticles/inst/rmarkdown/templates/pnas |only rticles-0.15/rticles/inst/rmarkdown/templates/rjournal |only rticles-0.15/rticles/inst/rmarkdown/templates/rsos |only rticles-0.15/rticles/inst/rmarkdown/templates/rss |only rticles-0.15/rticles/inst/rmarkdown/templates/sage |only rticles-0.15/rticles/inst/rmarkdown/templates/sim |only rticles-0.15/rticles/inst/rmarkdown/templates/springer |only rticles-0.15/rticles/inst/rmarkdown/templates/tf |only rticles-0.15/rticles/man/article.Rd | 58 - rticles-0.15/rticles/man/copernicus_article.Rd | 6 rticles-0.15/rticles/man/journals.Rd |only rticles-0.15/rticles/man/jss_article.Rd | 15 rticles-0.15/rticles/man/rjournal_article.Rd | 58 + rticles-0.15/rticles/man/rss_article.Rd | 8 rticles-0.15/rticles/tests/testit/test-formats.R | 62 - rticles-0.15/rticles/tests/testit/test-utils.R |only 81 files changed, 764 insertions(+), 418 deletions(-)
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <https://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 2.5.2 dated 2020-08-12 and 2.5.3 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ R/labkey.defaults.R | 45 +++++++++++++++++++++++---------------------- 4 files changed, 33 insertions(+), 29 deletions(-)
Title: Tools for Conducting and Analyzing Respirometry Experiments
Description: Provides tools to enable the researcher to more precisely conduct
respirometry experiments. Strong emphasis is on aquatic respirometry. Tools
focus on helping the researcher setup and conduct experiments. Functions for
analysis of resulting respirometry data are also provided. This package
provides tools for intermittent, flow-through, and closed respirometry
techniques.
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Diff between respirometry versions 1.1.0 dated 2020-04-29 and 1.2.0 dated 2020-08-26
DESCRIPTION | 10 +-- MD5 | 16 ++--- NAMESPACE | 1 NEWS | 6 + R/calc_alpha.R |only R/calc_pcrit.R | 140 +++++++++++++++++++++++++++++++++++---------- inst/extdata/mo2_v_po2.csv | 108 ---------------------------------- man/calc_alpha.Rd |only man/calc_pcrit.Rd | 35 +++++++++-- man/plot_pcrit.Rd | 24 +++++-- 10 files changed, 179 insertions(+), 161 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <sebastian.calonico@columbia.edu>, Matias D. Cattaneo <cattaneo@princeton.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@princeton.edu>
Maintainer: Sebastian Calonico <sebastian.calonico@columbia.edu>
Diff between rdrobust versions 0.99.8 dated 2020-06-05 and 0.99.9 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- man/rdbwselect.Rd | 20 ++++++++++---------- man/rdbwselect_2014.Rd | 4 ++-- man/rdplot.Rd | 12 ++++++------ man/rdrobust-package.Rd | 4 ++-- man/rdrobust.Rd | 20 ++++++++++---------- man/rdrobust_RDsenate.Rd | 4 ++-- 8 files changed, 43 insertions(+), 43 deletions(-)
Title: R Object-Oriented Programming with or without References
Description: Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.oo versions 1.23.0 dated 2019-11-03 and 1.24.0 dated 2020-08-26
R.oo-1.23.0/R.oo/R/zzz.rJava-tweaks.R |only R.oo-1.24.0/R.oo/DESCRIPTION | 8 ++-- R.oo-1.24.0/R.oo/MD5 | 25 ++++++------- R.oo-1.24.0/R.oo/NEWS | 16 ++++++++ R.oo-1.24.0/R.oo/R/Package.R | 5 ++ R.oo-1.24.0/R.oo/R/RccViolationException.R | 2 - R.oo-1.24.0/R.oo/R/Rdoc.R | 4 +- R.oo-1.24.0/R.oo/R/zzz.avoid_Object_clashes.R |only R.oo-1.24.0/R.oo/inst/WORDLIST |only R.oo-1.24.0/R.oo/man/Package.Rd | 24 ++++++++---- R.oo-1.24.0/R.oo/man/RccViolationException.Rd | 2 - R.oo-1.24.0/R.oo/man/Rdoc.Rd | 4 +- R.oo-1.24.0/R.oo/man/as.character.RccViolationException.Rd | 2 - R.oo-1.24.0/R.oo/man/getRccUrl.RccViolationException.Rd | 2 - R.oo-1.24.0/R.oo/tests/Package.R | 25 ++++++++----- 15 files changed, 79 insertions(+), 40 deletions(-)
Title: S3 Methods Simplified
Description: Methods that simplify the setup of S3 generic functions and S3 methods. Major effort has been made in making definition of methods as simple as possible with a minimum of maintenance for package developers. For example, generic functions are created automatically, if missing, and naming conflict are automatically solved, if possible. The method setMethodS3() is a good start for those who in the future may want to migrate to S4. This is a cross-platform package implemented in pure R that generates standard S3 methods.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.methodsS3 versions 1.8.0 dated 2020-02-14 and 1.8.1 dated 2020-08-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 8 +++++++- R/zzz.R | 7 ++++++- 4 files changed, 19 insertions(+), 8 deletions(-)
Title: Depth Measures in Multivariate, Regression and Functional
Settings
Description: Tools to compute depth measures and implementations of related
tasks such as outlier detection, data exploration and
classification of multivariate, regression and functional data.
Author: Pieter Segaert [aut],
Mia Hubert [aut],
Peter Rousseeuw [aut],
Jakob Raymaekers [aut, cre],
Kaveh Vakili [ctb]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between mrfDepth versions 1.0.12 dated 2020-04-01 and 1.0.13 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- R/fOutl.R | 50 +++++++++++++++++++++++++++++++++++++------------- src/Makevars | 4 ++-- src/Makevars.win | 4 ++-- 6 files changed, 51 insertions(+), 27 deletions(-)
Title: The Matrix Normal Distribution
Description: Computes densities, probabilities, and random deviates of the Matrix Normal (Iranmanesh et al. (2010) <doi:10.7508/ijmsi.2010.02.004>). Also includes simple but useful matrix functions. See the vignette for more information.
Author: Paul M. Hargarten [aut, cre]
Maintainer: Paul M. Hargarten <hargartenp@vcu.edu>
Diff between matrixNormal versions 0.0.1 dated 2019-07-09 and 0.0.4 dated 2020-08-26
DESCRIPTION | 25 - MD5 | 44 +- NAMESPACE | 1 NEWS.md | 73 +++- R/Special_matrices.R | 54 +-- R/is_symmetric_matrix.R | 69 ++-- R/matrixNormal_Distribution.R | 344 ++++++++++++--------- R/tr.R | 31 - R/vec.R | 66 ++-- R/vech.R |only build/vignette.rds |binary inst/WORDLIST | 19 + inst/doc/introduction-to-matrixnormal-package.R | 84 ++--- inst/doc/introduction-to-matrixnormal-package.Rmd | 83 +++-- inst/doc/introduction-to-matrixnormal-package.html | 80 +++- man/is.symmetric.matrix.Rd | 33 +- man/matrixNormal_Distribution.Rd | 135 ++++---- man/special.matrix.Rd | 24 - man/tr.Rd | 14 man/vec.Rd | 25 - man/vech.Rd |only tests/spelling.R | 2 tests/testthat/test_tr.R | 20 - vignettes/introduction-to-matrixnormal-package.Rmd | 83 +++-- 24 files changed, 765 insertions(+), 544 deletions(-)
Title: Data Used to Illustrate 'Loon' Functionality
Description: Data used as examples in the 'loon' package.
Author: R. Wayne Oldford [aut, cre],
Adrian Waddell [aut]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon.data versions 0.1.0 dated 2020-05-30 and 0.1.1 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 7 +++++++ R/binaryalphadigits.R | 2 +- R/covidNZ.R | 2 +- R/digits.R | 2 +- R/faces.R | 2 +- R/frey.R | 2 +- R/placenamesCanada.R | 4 ++-- data/covidNZ.rda |binary man/binaryalphadigits.Rd | 2 +- man/covidNZ.Rd | 2 +- man/digits.Rd | 2 +- man/faces.Rd | 2 +- man/frey.Rd | 2 +- man/placenamesCanada.Rd | 6 ++---- 16 files changed, 40 insertions(+), 35 deletions(-)
Title: Utility Functions for Statistical Analysis Report Generation and
Monte Carlo Studies
Description: Helper functions for creating formatted summary of regression models, writing publication-ready tables to latex files, and running Monte Carlo experiments.
Author: Youyi Fong [cre],
Krisztian Sebestyen [aut],
Jason Becker [ctb],
Bendix Carstensen [ctb],
Daryl Morris [ctb],
Josh Pasek [ctb],
Dennis Chao [ctb],
Andri Signorell [ctb]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between kyotil versions 2019.11-22 dated 2019-11-25 and 2020.8-22 dated 2020-08-26
ChangeLog | 13 +++++ DESCRIPTION | 13 +++-- MD5 | 40 +++++++++-------- NAMESPACE | 18 +++++-- R/VEplot.R | 2 R/base.R | 1 R/marginal.risk.R |only R/misc.R | 9 +++ R/plotting.R | 54 +++++++++++++---------- R/print.R | 51 ++++++++++++---------- R/regression.model.functions.R | 81 +++++++++++++++++++++++----------- R/tests.R | 9 +++ build |only inst/doc |only man/VEplot.Rd | 16 ++++++ man/marginal.risk.Rd |only man/misc.Rd | 5 ++ man/plotting.Rd | 88 +++++++++++++++++++++----------------- man/print.Rd | 45 ++++++++++++++++--- man/regression.model.functions.Rd | 20 ++++++-- man/string.Rd | 20 -------- src/matrix.c | 20 ++++++++ vignettes |only 23 files changed, 335 insertions(+), 170 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 0.9.5 dated 2020-06-02 and 0.9.6 dated 2020-08-26
DESCRIPTION | 10 +++--- MD5 | 10 +++--- NEWS.md | 4 ++ R/label.R | 79 +++++++++++++++++++++++++++----------------------- build/vignette.rds |binary inst/doc/jstable.html | 46 +++++++++++++++++++---------- 6 files changed, 89 insertions(+), 60 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.3.9 dated 2020-05-17 and 0.4.0 dated 2020-08-26
DESCRIPTION | 12 +- MD5 | 42 ++++--- NAMESPACE | 1 NEWS.md | 6 + R/jskm.R | 164 +++++++++++++++++++++++-------- R/svyjskm.R | 161 +++++++++++++++++++++++++----- README.md | 56 +++++++--- build/vignette.rds |binary inst/doc/jskm.R | 4 inst/doc/jskm.Rmd | 7 + inst/doc/jskm.html | 133 ++++++++++++++----------- man/figures/README-unnamed-chunk-1-1.png |binary man/figures/README-unnamed-chunk-1-2.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/figures/README-unnamed-chunk-4-3.png |only man/figures/README-unnamed-chunk-5-1.png |only man/figures/README-unnamed-chunk-5-2.png |only man/figures/README-unnamed-chunk-5-3.png |only man/jskm.Rd | 48 ++++++--- man/svyjskm.Rd | 40 +++++-- vignettes/jskm.Rmd | 7 + 24 files changed, 500 insertions(+), 181 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent access to
information contained in various R models, like model formulas, model terms,
information about random effects, data that was used to fit the model or
data from response variables. 'insight' mainly revolves around two types
of functions: Functions that find (the names of) information, starting with
'find_', and functions that get the underlying data, starting with 'get_'.
The package has a consistent syntax and works with many different model
objects, where otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.9.0 dated 2020-07-20 and 0.9.1 dated 2020-08-26
DESCRIPTION | 22 +- MD5 | 81 ++++---- NAMESPACE | 48 +++++ NEWS.md | 25 ++ R/clean_names.R | 2 R/compute_variances.R | 108 +++++++++-- R/find_formula.R | 68 ++++++- R/find_parameters.R | 94 +++++++++- R/find_statistic.R | 12 + R/find_terms.R | 2 R/format_number.R | 5 R/format_p.R | 2 R/format_value.R | 4 R/get_data.R | 59 ++++++ R/get_parameters.R | 99 ++++++++++ R/get_priors.R | 15 + R/get_statistic.R | 127 +++++++++++++ R/get_varcov.R | 73 +++++++- R/get_variances.R | 2 R/is_model.R | 6 R/is_model_supported.R | 7 R/link_function.R | 13 + R/link_inverse.R | 12 + R/model_info.R | 19 ++ R/n_obs.R | 42 ++++ R/utils_get_data.R | 2 R/utils_model_info.R | 73 +++++++- README.md | 76 ++++---- build/partial.rdb |binary inst/WORDLIST | 13 + inst/doc/insight.Rmd | 2 inst/doc/insight.html | 2 man/get_variance.Rd | 318 +++++++++++++++++------------------ tests/testthat/test-BayesFactorBF.R | 1 tests/testthat/test-FE-formula.R | 1 tests/testthat/test-brms.R | 91 +++++----- tests/testthat/test-crq.R |only tests/testthat/test-get_data.R | 5 tests/testthat/test-response_data2.R | 1 tests/testthat/test-rq.R | 2 tests/testthat/test-rstanarm.R | 63 +----- vignettes/insight.Rmd | 2 42 files changed, 1191 insertions(+), 408 deletions(-)
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' <http://freesurfer.net/> formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between freesurferformats versions 0.1.11 dated 2020-06-17 and 0.1.12 dated 2020-08-26
freesurferformats-0.1.11/freesurferformats/man/read.fs.curv.asc.Rd |only freesurferformats-0.1.11/freesurferformats/man/read.fs.curv.txt.Rd |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-read-fs-annot.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-read-fs-curv.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-read-fs-label.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-read-fs-mgh.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-read-fs-patch.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-read-fs-surface.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-read-fs-transform.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-read-nisurface.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-write-fs-annot.R |only freesurferformats-0.1.11/freesurferformats/tests/testthat/test-write-fs-curv.R |only 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Title: Generalised Additive Extreme Value Models
Description: Methods for fitting various extreme value distributions with parameters of
generalised additive model (GAM) form are provided. For details of distributions
see Coles, S.G. (2001) <doi:10.1007/978-1-4471-3675-0>, GAMs see Wood, S.N. (2017)
<doi:10.1201/9781315370279>, and the fitting approach see Wood, S.N., Pya, N. &
Safken, B. (2016) <doi:10.1080/01621459.2016.1180986>.
Author: Ben Youngman
Maintainer: Ben Youngman <b.youngman@exeter.ac.uk>
Diff between evgam versions 0.1.2 dated 2020-04-18 and 0.1.4 dated 2020-08-26
evgam-0.1.2/evgam/NEWS |only evgam-0.1.4/evgam/DESCRIPTION | 11 - evgam-0.1.4/evgam/MD5 | 29 +- evgam-0.1.4/evgam/NEWS.md |only evgam-0.1.4/evgam/R/RcppExports.R | 28 ++ evgam-0.1.4/evgam/R/generic.R | 78 ++++--- evgam-0.1.4/evgam/R/logdetH.R | 356 +++++++++++++-------------------- evgam-0.1.4/evgam/R/logdetS.R | 196 +++++++++++------- evgam-0.1.4/evgam/R/nohelp.R | 246 +++++++++++----------- evgam-0.1.4/evgam/R/penalty.R | 64 +++-- evgam-0.1.4/evgam/R/predict.R | 34 +-- evgam-0.1.4/evgam/R/reml.R | 145 +++++++------ evgam-0.1.4/evgam/R/setup_and_fit.R | 207 ++++++++++--------- evgam-0.1.4/evgam/man/plot.evgam.Rd | 19 - evgam-0.1.4/evgam/man/predict.evgam.Rd | 4 evgam-0.1.4/evgam/src/RcppExports.cpp | 101 +++++++++ evgam-0.1.4/evgam/src/gevaggC.cpp |only 17 files changed, 851 insertions(+), 667 deletions(-)
Title: Uncertainty Propagation for R Vectors
Description: Support for measurement errors in R vectors, matrices and arrays:
automatic uncertainty propagation and reporting.
Documentation about 'errors' is provided in the paper by Ucar, Pebesma &
Azcorra (2018, <doi:10.32614/RJ-2018-075>), included in this package as a
vignette; see 'citation("errors")' for details.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>),
Lionel Henry [ctb],
RStudio [cph] (Copyright for code written by RStudio employees.)
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between errors versions 0.3.4 dated 2020-06-13 and 0.3.5 dated 2020-08-26
DESCRIPTION | 8 +++---- MD5 | 20 ++++++++--------- NEWS.md | 4 +++ R/correl.R | 48 ++++++++++++++++++++++++++++++------------- R/errors.R | 1 R/utils.R | 8 +++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rjournal.pdf |binary man/plot.errors.Rd | 13 +++++++---- tests/testthat/test-correl.R | 6 ++--- 11 files changed, 69 insertions(+), 39 deletions(-)
Title: The Complete R6 Probability Distributions Interface
Description: An R6 object oriented distributions package. Unified interface for 42 probability distributions and 11 kernels including functionality for multiple scientific types. Additionally functionality for composite distributions and numerical imputation. Design patterns including wrappers and decorators are described in Gamma et al. (1994, ISBN:0-201-63361-2). For quick reference of probability distributions including d/p/q/r functions and results we refer to McLaughlin, M. P. (2001). Additionally Devroye (1986, ISBN:0-387-96305-7) for sampling the Dirichlet distribution, Gentle (2009) <doi:10.1007/978-0-387-98144-4> for sampling the Multivariate Normal distribution and Michael et al. (1976) <doi:10.2307/2683801> for sampling the Wald distribution.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Peter Ruckdeschel [ctb] (Author of distr),
Matthias Kohl [ctb] (Author of distr),
Shen Chen [ctb],
Jordan Deenichin [ctb],
Chengyang Gao [ctb],
Chloe Zhaoyuan Gu [ctb],
Yunjie He [ctb],
Xiaowen Huang [ctb],
Shuhan Liu [ctb],
Runlong Yu [ctb],
Chijing Zeng [ctb],
Qian Zhou [ctb]
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between distr6 versions 1.4.1 dated 2020-07-22 and 1.4.3 dated 2020-08-26
DESCRIPTION | 8 MD5 | 133 +-- NEWS.md | 13 R/Distribution.R | 46 - R/DistributionDecorator_ExoticStatistics.R | 46 - R/Distribution_Kernel.R | 1 R/Distribution_SDistribution.R | 22 R/ParameterSet.R | 274 ++----- R/ParameterSetCollection.R | 43 - R/SDistribution_Bernoulli.R | 5 R/SDistribution_Binomial.R | 4 R/SDistribution_Erlang.R | 10 R/SDistribution_Exponential.R | 10 R/SDistribution_Gamma.R | 15 R/SDistribution_Geometric.R | 10 R/SDistribution_Hypergeometric.R | 4 R/SDistribution_Laplace.R | 10 R/SDistribution_Logistic.R | 10 R/SDistribution_Loglogistic.R | 10 R/SDistribution_Lognormal.R | 34 R/SDistribution_MultivariateNormal.R | 10 R/SDistribution_NegBinomal.R | 9 R/SDistribution_Normal.R | 15 R/SDistribution_ShiftedLoglogistic.R | 4 R/SDistribution_Uniform.R | 2 R/SDistribution_Weibull.R | 10 R/SDistribution_WeightedDiscrete.R | 25 R/Wrapper_HuberizedDistribution.R | 10 R/Wrapper_TruncatedDistribution.R | 14 R/Wrapper_VectorDistribution.R | 11 R/assertions.R | 12 R/generalPNorm.R | 18 R/getParameterSet.R | 766 ++++++++------------- R/sets.R |only R/zzz.R | 2 inst/doc/distr6.R | 6 inst/doc/distr6.html | 114 +-- inst/doc/distr6.rmd | 6 man/Distribution.Rd | 7 man/Erlang.Rd | 27 man/Exponential.Rd | 27 man/Gamma.Rd | 27 man/Geometric.Rd | 27 man/Laplace.Rd | 27 man/Logistic.Rd | 27 man/Loglogistic.Rd | 27 man/Lognormal.Rd | 27 man/MultivariateNormal.Rd | 27 man/Normal.Rd | 27 man/ParameterSet.Rd | 151 +--- man/ParameterSetCollection.Rd | 6 man/TruncatedDistribution.Rd | 4 man/Weibull.Rd | 27 man/WeightedDiscrete.Rd | 27 man/generalPNorm.Rd | 10 src/Distributions.cpp | 7 tests/testthat/Rplots.pdf |binary tests/testthat/helpers.R | 4 tests/testthat/test-DistGumbel.R | 4 tests/testthat/test-DistLognormal.R | 1 tests/testthat/test-DistNegativeBinomial.R | 4 tests/testthat/test-DistWeightedDiscrete.R | 1 tests/testthat/test-Distributions.R | 12 tests/testthat/test-ParameterSet.R | 34 tests/testthat/test_decorator_exoticstatistics.R | 14 tests/testthat/test_decorator_functionimputation.R | 11 tests/testthat/test_kernel_epanechnikov.R | 2 vignettes/distr6.rmd | 6 68 files changed, 1290 insertions(+), 1054 deletions(-)
Title: Solving Differential Equations (ODEs, SDEs, DDEs, DAEs)
Description: An interface to 'DifferentialEquations.jl' <https://diffeq.sciml.ai/dev/> from the R programming language.
It has unique high performance methods for solving ordinary differential equations (ODE), stochastic differential equations (SDE),
delay differential equations (DDE), differential-algebraic equations (DAE), and more. Much of the functionality,
including features like adaptive time stepping in SDEs, are unique and allow for multiple orders of magnitude speedup over more common methods.
'diffeqr' attaches an R interface onto the package, allowing seamless use of this tooling by R users.
Author: Christopher Rackauckas [aut, cre]
Maintainer: Christopher Rackauckas <me@chrisrackauckas.com>
Diff between diffeqr versions 0.1.3 dated 2019-09-22 and 1.0.0 dated 2020-08-26
diffeqr-0.1.3/diffeqr/man/dae.solve.Rd |only diffeqr-0.1.3/diffeqr/man/dde.solve.Rd |only diffeqr-0.1.3/diffeqr/man/ode.solve.Rd |only diffeqr-0.1.3/diffeqr/man/sde.solve.Rd |only diffeqr-1.0.0/diffeqr/DESCRIPTION | 15 diffeqr-1.0.0/diffeqr/LICENSE | 4 diffeqr-1.0.0/diffeqr/MD5 | 67 - diffeqr-1.0.0/diffeqr/NAMESPACE | 7 diffeqr-1.0.0/diffeqr/NEWS.md | 35 diffeqr-1.0.0/diffeqr/R/diffeqr.R | 442 +--------- diffeqr-1.0.0/diffeqr/README.md | 1029 +++++++++++++++--------- diffeqr-1.0.0/diffeqr/build/vignette.rds |binary diffeqr-1.0.0/diffeqr/inst/doc/dae.R | 2 diffeqr-1.0.0/diffeqr/inst/doc/dae.Rmd | 127 +- diffeqr-1.0.0/diffeqr/inst/doc/dae.html | 120 +- diffeqr-1.0.0/diffeqr/inst/doc/dde.R | 2 diffeqr-1.0.0/diffeqr/inst/doc/dde.Rmd | 100 +- diffeqr-1.0.0/diffeqr/inst/doc/dde.html | 93 +- diffeqr-1.0.0/diffeqr/inst/doc/gpu.R |only diffeqr-1.0.0/diffeqr/inst/doc/gpu.Rmd |only diffeqr-1.0.0/diffeqr/inst/doc/gpu.html |only diffeqr-1.0.0/diffeqr/inst/doc/ode.R | 2 diffeqr-1.0.0/diffeqr/inst/doc/ode.Rmd | 366 ++++---- diffeqr-1.0.0/diffeqr/inst/doc/ode.html | 193 ++-- diffeqr-1.0.0/diffeqr/inst/doc/sde.R | 2 diffeqr-1.0.0/diffeqr/inst/doc/sde.Rmd | 254 +++-- diffeqr-1.0.0/diffeqr/inst/doc/sde.html | 204 ++-- diffeqr-1.0.0/diffeqr/man/diffeqgpu_setup.Rd |only diffeqr-1.0.0/diffeqr/man/jitoptimize_ode.Rd |only diffeqr-1.0.0/diffeqr/man/jitoptimize_sde.Rd |only diffeqr-1.0.0/diffeqr/tests/testthat.R | 4 diffeqr-1.0.0/diffeqr/tests/testthat/test_dae.R | 54 - diffeqr-1.0.0/diffeqr/tests/testthat/test_dde.R | 50 - diffeqr-1.0.0/diffeqr/tests/testthat/test_ode.R | 121 +- diffeqr-1.0.0/diffeqr/tests/testthat/test_sde.R | 91 -- diffeqr-1.0.0/diffeqr/vignettes/dae.Rmd | 127 +- diffeqr-1.0.0/diffeqr/vignettes/dde.Rmd | 100 +- diffeqr-1.0.0/diffeqr/vignettes/gpu.Rmd |only diffeqr-1.0.0/diffeqr/vignettes/ode.Rmd | 366 ++++---- diffeqr-1.0.0/diffeqr/vignettes/sde.Rmd | 254 +++-- 40 files changed, 2260 insertions(+), 1971 deletions(-)
Title: Extending 'dendrogram' Functionality in R
Description: Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Yoav Benjamini [ths],
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] (imported code from his dendroextras
package),
Marco Gallotta [ctb] (a.k.a: marcog),
Johan Renaudie [ctb] (https://github.com/plannapus),
The R Core Team [ctb] (Thanks for the Infastructure, and code in the
examples),
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvath [ctb],
Peter Langfelder [ctb],
skullkey [ctb],
Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram),
Andrie de Vries [ctb] (ggdendro author),
Zuguang Gu [ctb] (circlize author),
Cath [ctb] (https://github.com/CathG),
John Ma [ctb] (https://github.com/JohnMCMa),
Krzysiek G [ctb] (https://github.com/storaged),
Manuela Hummel [ctb] (https://github.com/hummelma),
Chase Clark [ctb] (https://github.com/chasemc),
Lucas Graybuck [ctb] (https://github.com/hypercompetent),
jdetribol [ctb] (https://github.com/jdetribol),
Ben Ho [ctb] (https://github.com/SplitInf),
Samuel Perreault [ctb] (https://github.com/samperochkin),
Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/),
David Bradley [ctb] (https://github.com/DBradley27),
Houyun Huang [ctb] (https://github.com/houyunhuang)
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextend versions 1.13.4 dated 2020-02-28 and 1.14.0 dated 2020-08-26
ChangeLog | 752 ++++++++++++++ DESCRIPTION | 23 MD5 | 150 +- NEWS | 15 NEWS.md | 15 R/ape.R | 2 R/as.dendrogram.randomForest.R | 2 R/attr_access.R | 2 R/bk_method.R | 14 R/color_branches.R | 2 R/colored_bars.R | 4 R/colored_dots.R | 4 R/cor_cophenetic.R | 2 R/cutree.dendrogram.R | 2 R/dendextend-package.R | 9 R/get_subdendrograms.R | 49 R/ggdend.R | 23 R/highlight_branches.R | 2 R/labels.R | 6 R/labels_colors.R | 4 R/magrittr.R | 2 R/nleaves.R | 2 R/pvclust.R | 2 R/rect.dendrogram.R | 2 R/tanglegram.R | 6 R/untangle.R | 2 R/zzz.R | 15 build/vignette.rds |binary inst/WORDLIST |only inst/doc/Cluster_Analysis.R | 96 - inst/doc/Cluster_Analysis.Rmd | 14 inst/doc/Cluster_Analysis.html | 987 +++++++++++-------- inst/doc/FAQ.R | 34 inst/doc/FAQ.Rmd | 24 inst/doc/FAQ.html | 853 ++++++++++------ inst/doc/Quick_Introduction.R | 26 inst/doc/Quick_Introduction.Rmd | 2 inst/doc/Quick_Introduction.html | 351 +++++- inst/doc/dendextend.R | 164 +-- inst/doc/dendextend.Rmd | 14 inst/doc/dendextend.html | 1679 ++++++++++++++++++--------------- man/Bk.Rd | 2 man/Bk_permutations.Rd | 2 man/Bk_plot.Rd | 2 man/FM_index.Rd | 2 man/FM_index_R.Rd | 2 man/FM_index_permutation.Rd | 2 man/all_unique.Rd | 2 man/cor_cophenetic.Rd | 2 man/dendextend-package.Rd | 6 man/find_dendrogram.Rd | 31 man/get_subdendrograms.Rd | 2 man/ggdend.Rd | 6 man/hang.dendrogram.Rd | 2 man/is.natural.number.Rd | 2 man/khan.Rd | 6 man/labels-assign.Rd | 4 man/labels_colors.Rd | 2 man/na_locf.Rd | 2 man/rect.dendrogram.Rd | 2 man/reexports.Rd | 2 man/set.Rd | 8 man/tanglegram.Rd | 6 tests/test-all.R | 24 tests/testthat/test-bk_method.R | 5 tests/testthat/test-cor_bakers_gamma.R | 3 tests/testthat/test-cor_cophenetic.R | 3 tests/testthat/test-dendlist.R | 3 tests/testthat/test-find_dendrogram.R |only tests/testthat/test-ggdend.R | 2 tests/testthat/test-pvclust_extract.R | 4 tests/testthat/test-set.dendrogram.R | 11 tests/testthat/test-untangle.R | 7 vignettes/Cluster_Analysis.Rmd | 14 vignettes/FAQ.Rmd | 24 vignettes/Quick_Introduction.Rmd | 2 vignettes/dendextend.Rmd | 14 77 files changed, 3602 insertions(+), 1968 deletions(-)
Title: Interface to 'the CAVD DataSpace'
Description: Provides a convenient API interface to access immunological data
within 'the CAVD DataSpace'(<https://dataspace.cavd.org>), a data sharing
and discovery tool that facilitates exploration of HIV immunological data
from pre-clinical and clinical HIV vaccine studies.
Author: Ju Yeong Kim [aut, cre, cph],
Sean Hughes [rev] (Sean reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/261>),
Jason Taylor [aut],
Helen Miller [aut]
Maintainer: Ju Yeong Kim <jkim2345@fredhutch.org>
Diff between DataSpaceR versions 0.7.3 dated 2020-01-08 and 0.7.4 dated 2020-08-26
DataSpaceR-0.7.3/DataSpaceR/inst/doc/DataSpaceR.R |only DataSpaceR-0.7.3/DataSpaceR/inst/doc/Monoconal_Antibody_Data.R |only DataSpaceR-0.7.3/DataSpaceR/inst/doc/Non_Integrated_Datasets.R |only DataSpaceR-0.7.4/DataSpaceR/DESCRIPTION | 10 DataSpaceR-0.7.4/DataSpaceR/MD5 | 53 DataSpaceR-0.7.4/DataSpaceR/NEWS.md | 11 DataSpaceR-0.7.4/DataSpaceR/R/DataSpaceConnection.R | 288 - DataSpaceR-0.7.4/DataSpaceR/R/DataSpaceMab.R | 82 DataSpaceR-0.7.4/DataSpaceR/R/DataSpaceStudy.R | 240 DataSpaceR-0.7.4/DataSpaceR/README.md | 43 DataSpaceR-0.7.4/DataSpaceR/build/vignette.rds |binary DataSpaceR-0.7.4/DataSpaceR/inst/doc/DataSpaceR.Rmd | 268 - DataSpaceR-0.7.4/DataSpaceR/inst/doc/DataSpaceR.html | 503 + DataSpaceR-0.7.4/DataSpaceR/inst/doc/Monoconal_Antibody_Data.Rmd | 86 DataSpaceR-0.7.4/DataSpaceR/inst/doc/Monoconal_Antibody_Data.html | 2591 ---------- DataSpaceR-0.7.4/DataSpaceR/inst/doc/Non_Integrated_Datasets.Rmd | 87 DataSpaceR-0.7.4/DataSpaceR/inst/doc/Non_Integrated_Datasets.html | 171 DataSpaceR-0.7.4/DataSpaceR/inst/doc/Publication_Data.Rmd |only DataSpaceR-0.7.4/DataSpaceR/inst/doc/Publication_Data.html |only DataSpaceR-0.7.4/DataSpaceR/man/DataSpaceConnection.Rd | 187 DataSpaceR-0.7.4/DataSpaceR/man/DataSpaceMab.Rd | 91 DataSpaceR-0.7.4/DataSpaceR/man/DataSpaceStudy.Rd | 205 DataSpaceR-0.7.4/DataSpaceR/tests/testthat/test-connection.R | 70 DataSpaceR-0.7.4/DataSpaceR/tests/testthat/test-study.R | 24 DataSpaceR-0.7.4/DataSpaceR/vignettes/DataSpaceR.Rmd | 268 - DataSpaceR-0.7.4/DataSpaceR/vignettes/DataSpaceR.Rmd.og |only DataSpaceR-0.7.4/DataSpaceR/vignettes/Monoconal_Antibody_Data.Rmd | 86 DataSpaceR-0.7.4/DataSpaceR/vignettes/Monoconal_Antibody_Data.Rmd.og |only DataSpaceR-0.7.4/DataSpaceR/vignettes/Non_Integrated_Datasets.Rmd | 87 DataSpaceR-0.7.4/DataSpaceR/vignettes/Non_Integrated_Datasets.Rmd.og |only DataSpaceR-0.7.4/DataSpaceR/vignettes/Publication_Data.Rmd |only DataSpaceR-0.7.4/DataSpaceR/vignettes/Publication_Data.Rmd.og |only DataSpaceR-0.7.4/DataSpaceR/vignettes/precompile.R |only 33 files changed, 2080 insertions(+), 3371 deletions(-)
Title: Compare Baseline Characteristics Between Groups
Description: Compare baseline characteristics between two or more groups. The variables being compared can be factor and numeric variables. The function will automatically judge the type and distribution of the variables, and make statistical description and bivariate analysis.
Author: Zhongheng Zhang,
Sir Run Run Shaw hospital,
Zhejiang university school of medicine
Maintainer: Zhongheng Zhang <zh_zhang1984@zju.edu.cn>
Diff between CBCgrps versions 2.7 dated 2020-02-24 and 2.8.1 dated 2020-08-26
DESCRIPTION | 9 ++-- MD5 | 9 ++-- R/multigrps.R | 40 ++++++++++++++-------- R/twogrps.R | 103 ++++++++++++++++++++++++++++++++++++++++++++------------- README.md |only man/twogrps.Rd | 7 ++- 6 files changed, 121 insertions(+), 47 deletions(-)
Title: Data Used in the Vignettes Accompanying the CARBayes and
CARBayesST Packages
Description: Spatio-temporal data from Scotland used in the vignettes accompanying the CARBayes (spatial modelling) and CARBayesST (spatio-temporal modelling) packages. All data except for the Scottish lip cancer data relate to the set of 271 Intermediate Geographies (IG, but also known as Intermediate Zones (IZ)) that make up the 2001 definition of the Greater Glasgow and Clyde health board.
Author: Duncan Lee
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayesdata versions 2.1 dated 2018-08-31 and 2.2 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- data/GGHB.IG.rda |binary data/lipdata.rda |binary data/lipdbf.rda |binary data/lipshp.rda |binary data/pollutionhealthdata.rda |binary data/pricedata.rda |binary data/respiratorydata.rda |binary data/salesdata.rda |binary man/CARBayesdata-package.Rd | 4 ++-- 11 files changed, 16 insertions(+), 16 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Mohammadi and Wit (2019) <doi:10.18637/jss.v089.i03>.
Author: Reza Mohammadi [aut, cre] (<https://orcid.org/0000-0001-9538-0648>),
Ernst Wit [aut] (<https://orcid.org/0000-0002-3671-9610>),
Adrian Dobra [ctb] (<https://orcid.org/0000-0001-7793-2197>)
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between BDgraph versions 2.62 dated 2019-12-05 and 2.63 dated 2020-08-26
BDgraph-2.62/BDgraph/NEWS |only BDgraph-2.63/BDgraph/DESCRIPTION | 32 ++++-- BDgraph-2.63/BDgraph/MD5 | 122 ++++++++++++------------- BDgraph-2.63/BDgraph/NEWS.md |only BDgraph-2.63/BDgraph/R/adj2link.R | 4 BDgraph-2.63/BDgraph/R/bdgraph.R | 24 ++-- BDgraph-2.63/BDgraph/R/bdgraph.mpl.R | 30 ++---- BDgraph-2.63/BDgraph/R/bdgraph.npn.R | 6 - BDgraph-2.63/BDgraph/R/bdgraph.sim.R | 65 +++++++++---- BDgraph-2.63/BDgraph/R/bf.R | 2 BDgraph-2.63/BDgraph/R/compare.R | 4 BDgraph-2.63/BDgraph/R/covariance.R | 2 BDgraph-2.63/BDgraph/R/detect_cores.R | 2 BDgraph-2.63/BDgraph/R/get_things.R | 74 ++++++++++----- BDgraph-2.63/BDgraph/R/gnorm.R | 4 BDgraph-2.63/BDgraph/R/graph.sim.R | 15 +-- BDgraph-2.63/BDgraph/R/hill_climb_algorithm.R | 8 - BDgraph-2.63/BDgraph/R/hill_climb_binary.R | 8 - BDgraph-2.63/BDgraph/R/link2adj.R | 10 +- BDgraph-2.63/BDgraph/R/pgraph.R | 4 BDgraph-2.63/BDgraph/R/plinks.R | 4 BDgraph-2.63/BDgraph/R/plotcoda.R | 10 +- BDgraph-2.63/BDgraph/R/plotroc.R | 39 +++---- BDgraph-2.63/BDgraph/R/precision.R | 6 - BDgraph-2.63/BDgraph/R/rgwish.R | 14 +- BDgraph-2.63/BDgraph/R/rmvnorm.R | 6 - BDgraph-2.63/BDgraph/R/rwish.R | 12 +- BDgraph-2.63/BDgraph/R/select.R | 6 - BDgraph-2.63/BDgraph/R/traceplot.R | 8 - BDgraph-2.63/BDgraph/R/transfer.R | 4 BDgraph-2.63/BDgraph/README.md |only BDgraph-2.63/BDgraph/build/vignette.rds |binary BDgraph-2.63/BDgraph/inst/doc/vignette.pdf |binary BDgraph-2.63/BDgraph/man/BDgraph-package.Rd | 2 BDgraph-2.63/BDgraph/man/bdgraph.Rd | 7 - BDgraph-2.63/BDgraph/man/bdgraph.mpl.Rd | 11 +- BDgraph-2.63/BDgraph/man/bdgraph.sim.Rd | 27 +++-- BDgraph-2.63/BDgraph/man/bf.Rd | 2 BDgraph-2.63/BDgraph/man/compare.Rd | 2 BDgraph-2.63/BDgraph/man/covariance.Rd | 2 BDgraph-2.63/BDgraph/man/plinks.Rd | 2 BDgraph-2.63/BDgraph/man/plotcoda.Rd | 2 BDgraph-2.63/BDgraph/man/plotroc.Rd | 2 BDgraph-2.63/BDgraph/man/precision.Rd | 2 BDgraph-2.63/BDgraph/man/select.Rd | 2 BDgraph-2.63/BDgraph/man/traceplot.Rd | 2 BDgraph-2.63/BDgraph/man/trensfer.Rd | 6 - BDgraph-2.63/BDgraph/src/BDgraph_init.c | 12 ++ BDgraph-2.63/BDgraph/src/copula.cpp | 97 +++++++++++++++++++ BDgraph-2.63/BDgraph/src/copula.h | 10 +- BDgraph-2.63/BDgraph/src/gcgm_DMH.cpp | 46 +++++++-- BDgraph-2.63/BDgraph/src/gcgm_bd.cpp | 34 +++++- BDgraph-2.63/BDgraph/src/gcgm_dw_bd.cpp |only BDgraph-2.63/BDgraph/src/ggm_DMH.cpp | 50 +++++++--- BDgraph-2.63/BDgraph/src/ggm_bd.cpp | 32 ++++-- BDgraph-2.63/BDgraph/src/ggm_mpl_bd.cpp | 50 +++++++--- BDgraph-2.63/BDgraph/src/gm_mpl_Hill_Climb.cpp | 2 BDgraph-2.63/BDgraph/src/gm_mpl_bd_dis.cpp | 82 ++++++++++++---- BDgraph-2.63/BDgraph/src/gm_rj.cpp | 34 +++++- BDgraph-2.63/BDgraph/src/matrix.cpp | 2 BDgraph-2.63/BDgraph/src/matrix.h | 2 BDgraph-2.63/BDgraph/src/omp_set_num_cores.cpp | 2 BDgraph-2.63/BDgraph/src/rgwish.cpp | 7 + BDgraph-2.63/BDgraph/src/rgwish.h | 2 64 files changed, 697 insertions(+), 363 deletions(-)
Title: Model Selection and Multimodel Inference Based on (Q)AIC(c)
Description: Functions to implement model selection and multimodel inference based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc) from various model object classes. The package implements classic model averaging for a given parameter of interest or predicted values, as well as a shrinkage version of model averaging parameter estimates or effect sizes. The package includes diagnostics and goodness-of-fit statistics for certain model types including those of 'unmarkedFit' classes estimating demographic parameters after accounting for imperfect detection probabilities. Some functions also allow the creation of model selection tables for Bayesian models of the 'bugs', 'rjags', and 'jagsUI' classes. Functions also implement model selection using BIC. Objects following model selection and multimodel inference can be formatted to LaTeX using 'xtable' methods included in the package.
Author: Marc J. Mazerolle <marc.mazerolle@sbf.ulaval.ca>
Maintainer: Marc J. Mazerolle <marc.mazerolle@sbf.ulaval.ca>
Diff between AICcmodavg versions 2.3-0 dated 2020-07-03 and 2.3-1 dated 2020-08-26
DESCRIPTION | 8 MD5 | 34 R/Nmix.gof.test.R | 194 +++-- R/countDist.R | 297 +++----- R/countHist.R | 1678 ++++++++++++++++++++++------------------------ R/detTime.R | 60 - R/mb.gof.test.R | 132 +-- build |only inst/NEWS | 20 inst/NEWS.Rd |only inst/doc |only man/AICcmodavg-package.Rd | 4 man/Nmix.gof.test.Rd | 20 man/countDist.Rd | 40 - man/countHist.Rd | 43 - man/detTime.Rd | 25 man/mb.gof.test.Rd | 40 - vignettes |only 18 files changed, 1349 insertions(+), 1246 deletions(-)
Title: Analysis of Diversity
Description: Functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. The package also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.
Author: Sandrine Pavoine
Maintainer: Sandrine Pavoine <sandrine.pavoine@mnhn.fr>
Diff between adiv versions 2.0 dated 2020-02-11 and 2.0.1 dated 2020-08-26
DESCRIPTION | 8 +++---- MD5 | 37 ++++++++++++++++++----------------- NAMESPACE | 6 ++--- R/EqRS.R | 12 +++++------ R/EqRSintra.R | 10 ++++----- R/EqRao.R | 16 +++++++-------- R/optimEH.R | 2 - R/orisaved.R | 2 - R/plot.evoCA.R | 3 +- R/rtestEqRS.R | 37 ++++++++++++++++++++++++++++------- R/rtestEqRSintra.R | 37 ++++++++++++++++++++++++++++------- R/rtestEqRao.R | 36 +++++++++++++++++++++++++++++----- R/rtestwapqe.R | 52 ++++++++++++++++++++++++++++++++++++-------------- R/wapqe.R | 2 - build/partial.rdb |binary data/RutorGlacier.rda |binary inst/CITATION |only man/EqRao.Rd | 13 +++++++++--- man/RutorGlacier.Rd | 6 +++-- man/evoCA.Rd | 15 +++++++++++--- 20 files changed, 205 insertions(+), 89 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data
analysis, drake rebuilds intermediate data objects when their
dependencies change, and it skips work when the results are already up
to date. Not every execution starts from scratch, there is native
support for parallel and distributed computing, and completed projects
have tangible evidence that they are reproducible. Extensive
documentation, from beginner-friendly tutorials to practical examples
and more, is available at the reference website
<https://docs.ropensci.org/drake/> and the online manual
<https://books.ropensci.org/drake/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Ellis Hughes [ctb],
Matthew Mark Strasiotto [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.12.4 dated 2020-06-29 and 7.12.5 dated 2020-08-26
drake-7.12.4/drake/R/lifecycle.R |only drake-7.12.4/drake/build |only drake-7.12.5/drake/DESCRIPTION | 8 drake-7.12.5/drake/MD5 | 495 +++++++++---------- drake-7.12.5/drake/NEWS.md | 15 drake-7.12.5/drake/R/backend_clustermq.R | 5 drake-7.12.5/drake/R/backend_future.R | 2 drake-7.12.5/drake/R/build_times.R | 2 drake-7.12.5/drake/R/cache.R | 36 - drake-7.12.5/drake/R/clean.R | 8 drake-7.12.5/drake/R/decorate_storr.R | 4 drake-7.12.5/drake/R/defunct.R | 74 +- drake-7.12.5/drake/R/deprecated.R | 138 ++--- drake-7.12.5/drake/R/deps.R | 10 drake-7.12.5/drake/R/drake_build.R | 6 drake-7.12.5/drake/R/drake_config.R | 12 drake-7.12.5/drake/R/drake_example.R | 8 drake-7.12.5/drake/R/drake_ggraph.R | 4 drake-7.12.5/drake/R/drake_graph_info.R | 6 drake-7.12.5/drake/R/drake_history.R | 2 drake-7.12.5/drake/R/drake_meta_.R | 2 drake-7.12.5/drake/R/drake_plan.R | 12 drake-7.12.5/drake/R/drake_plan_helpers.R | 34 - drake-7.12.5/drake/R/dynamic.R | 28 - drake-7.12.5/drake/R/hpc.R | 4 drake-7.12.5/drake/R/make.R | 10 drake-7.12.5/drake/R/manage_memory.R | 2 drake-7.12.5/drake/R/outdated.R | 6 drake-7.12.5/drake/R/predict_runtime.R | 4 drake-7.12.5/drake/R/process_imports.R | 2 drake-7.12.5/drake/R/r_make.R | 2 drake-7.12.5/drake/R/rstudio.R | 8 drake-7.12.5/drake/R/s3_drake_settings.R | 14 drake-7.12.5/drake/R/sankey_drake_graph.R | 4 drake-7.12.5/drake/R/store_outputs.R | 6 drake-7.12.5/drake/R/text_drake_graph.R | 4 drake-7.12.5/drake/R/transform_plan.R | 6 drake-7.12.5/drake/R/use_drake.R | 2 drake-7.12.5/drake/R/utils.R | 2 drake-7.12.5/drake/R/vis_drake_graph.R | 15 drake-7.12.5/drake/inst/WORDLIST | 2 drake-7.12.5/drake/inst/testing/cran-checklist.md | 4 drake-7.12.5/drake/man/Makefile_recipe.Rd | 2 drake-7.12.5/drake/man/analyses.Rd | 2 drake-7.12.5/drake/man/analysis_wildcard.Rd | 2 drake-7.12.5/drake/man/as_drake_filename.Rd | 2 drake-7.12.5/drake/man/as_file.Rd | 2 drake-7.12.5/drake/man/available_hash_algos.Rd | 2 drake-7.12.5/drake/man/backend.Rd | 2 drake-7.12.5/drake/man/bind_plans.Rd | 2 drake-7.12.5/drake/man/build_drake_graph.Rd | 2 drake-7.12.5/drake/man/build_graph.Rd | 2 drake-7.12.5/drake/man/build_times.Rd | 2 drake-7.12.5/drake/man/built.Rd | 2 drake-7.12.5/drake/man/cache_namespaces.Rd | 2 drake-7.12.5/drake/man/cache_path.Rd | 2 drake-7.12.5/drake/man/cached.Rd | 2 drake-7.12.5/drake/man/cached_planned.Rd | 2 drake-7.12.5/drake/man/cached_unplanned.Rd | 2 drake-7.12.5/drake/man/cancel.Rd | 2 drake-7.12.5/drake/man/cancel_if.Rd | 2 drake-7.12.5/drake/man/check.Rd | 2 drake-7.12.5/drake/man/check_plan.Rd | 2 drake-7.12.5/drake/man/clean.Rd | 2 drake-7.12.5/drake/man/clean_main_example.Rd | 2 drake-7.12.5/drake/man/clean_mtcars_example.Rd | 2 drake-7.12.5/drake/man/cleaned_namespaces.Rd | 2 drake-7.12.5/drake/man/cmq_build.Rd | 2 drake-7.12.5/drake/man/code_to_function.Rd | 2 drake-7.12.5/drake/man/code_to_plan.Rd | 2 drake-7.12.5/drake/man/config.Rd | 2 drake-7.12.5/drake/man/configure_cache.Rd | 2 drake-7.12.5/drake/man/dataframes_graph.Rd | 2 drake-7.12.5/drake/man/dataset_wildcard.Rd | 2 drake-7.12.5/drake/man/debug_and_run.Rd | 2 drake-7.12.5/drake/man/default_Makefile_args.Rd | 2 drake-7.12.5/drake/man/default_Makefile_command.Rd | 2 drake-7.12.5/drake/man/default_graph_title.Rd | 2 drake-7.12.5/drake/man/default_long_hash_algo.Rd | 2 drake-7.12.5/drake/man/default_parallelism.Rd | 2 drake-7.12.5/drake/man/default_recipe_command.Rd | 2 drake-7.12.5/drake/man/default_short_hash_algo.Rd | 2 drake-7.12.5/drake/man/default_system2_args.Rd | 2 drake-7.12.5/drake/man/default_verbose.Rd | 2 drake-7.12.5/drake/man/dependency_profile.Rd | 2 drake-7.12.5/drake/man/deprecate_wildcard.Rd | 2 drake-7.12.5/drake/man/deps.Rd | 2 drake-7.12.5/drake/man/deps_code.Rd | 2 drake-7.12.5/drake/man/deps_knitr.Rd | 2 drake-7.12.5/drake/man/deps_profile.Rd | 2 drake-7.12.5/drake/man/deps_target.Rd | 2 drake-7.12.5/drake/man/deps_targets.Rd | 2 drake-7.12.5/drake/man/diagnose.Rd | 2 drake-7.12.5/drake/man/do_prework.Rd | 2 drake-7.12.5/drake/man/doc_of_function_call.Rd | 2 drake-7.12.5/drake/man/drake_batchtools_tmpl_file.Rd | 2 drake-7.12.5/drake/man/drake_build.Rd | 2 drake-7.12.5/drake/man/drake_cache.Rd | 2 drake-7.12.5/drake/man/drake_cache_log.Rd | 2 drake-7.12.5/drake/man/drake_cache_log_file.Rd | 2 drake-7.12.5/drake/man/drake_cancelled.Rd | 2 drake-7.12.5/drake/man/drake_config.Rd | 9 drake-7.12.5/drake/man/drake_debug.Rd | 2 drake-7.12.5/drake/man/drake_done.Rd | 2 drake-7.12.5/drake/man/drake_envir.Rd | 2 drake-7.12.5/drake/man/drake_example.Rd | 2 drake-7.12.5/drake/man/drake_examples.Rd | 2 drake-7.12.5/drake/man/drake_failed.Rd | 2 drake-7.12.5/drake/man/drake_gc.Rd | 2 drake-7.12.5/drake/man/drake_get_session_info.Rd | 2 drake-7.12.5/drake/man/drake_ggraph.Rd | 2 drake-7.12.5/drake/man/drake_graph_info.Rd | 2 drake-7.12.5/drake/man/drake_history.Rd | 2 drake-7.12.5/drake/man/drake_hpc_template_file.Rd | 2 drake-7.12.5/drake/man/drake_hpc_template_files.Rd | 2 drake-7.12.5/drake/man/drake_meta.Rd | 2 drake-7.12.5/drake/man/drake_palette.Rd | 2 drake-7.12.5/drake/man/drake_plan.Rd | 2 drake-7.12.5/drake/man/drake_plan_source.Rd | 2 drake-7.12.5/drake/man/drake_progress.Rd | 2 drake-7.12.5/drake/man/drake_quotes.Rd | 2 drake-7.12.5/drake/man/drake_running.Rd | 2 drake-7.12.5/drake/man/drake_session.Rd | 2 drake-7.12.5/drake/man/drake_settings.Rd | 3 drake-7.12.5/drake/man/drake_slice.Rd | 2 drake-7.12.5/drake/man/drake_strings.Rd | 2 drake-7.12.5/drake/man/drake_tempfile.Rd | 2 drake-7.12.5/drake/man/drake_tip.Rd | 2 drake-7.12.5/drake/man/drake_unquote.Rd | 2 drake-7.12.5/drake/man/evaluate.Rd | 2 drake-7.12.5/drake/man/evaluate_plan.Rd | 2 drake-7.12.5/drake/man/example_drake.Rd | 2 drake-7.12.5/drake/man/examples_drake.Rd | 2 drake-7.12.5/drake/man/expand.Rd | 2 drake-7.12.5/drake/man/expand_plan.Rd | 2 drake-7.12.5/drake/man/expose_imports.Rd | 2 drake-7.12.5/drake/man/failed.Rd | 2 drake-7.12.5/drake/man/figures/image-credit.md | 1 drake-7.12.5/drake/man/figures/workflowing.png |only drake-7.12.5/drake/man/file_in.Rd | 2 drake-7.12.5/drake/man/file_out.Rd | 2 drake-7.12.5/drake/man/file_store.Rd | 2 drake-7.12.5/drake/man/find_cache.Rd | 2 drake-7.12.5/drake/man/find_knitr_doc.Rd | 2 drake-7.12.5/drake/man/find_project.Rd | 2 drake-7.12.5/drake/man/from_plan.Rd | 2 drake-7.12.5/drake/man/future_build.Rd | 2 drake-7.12.5/drake/man/gather.Rd | 2 drake-7.12.5/drake/man/gather_by.Rd | 2 drake-7.12.5/drake/man/gather_plan.Rd | 2 drake-7.12.5/drake/man/get_cache.Rd | 2 drake-7.12.5/drake/man/get_trace.Rd | 2 drake-7.12.5/drake/man/id_chr.Rd | 2 drake-7.12.5/drake/man/ignore.Rd | 2 drake-7.12.5/drake/man/imported.Rd | 2 drake-7.12.5/drake/man/in_progress.Rd | 2 drake-7.12.5/drake/man/is_function_call.Rd | 2 drake-7.12.5/drake/man/isolate_example.Rd | 2 drake-7.12.5/drake/man/knitr_deps.Rd | 2 drake-7.12.5/drake/man/knitr_in.Rd | 2 drake-7.12.5/drake/man/legend_nodes.Rd | 2 drake-7.12.5/drake/man/load_basic_example.Rd | 2 drake-7.12.5/drake/man/load_main_example.Rd | 2 drake-7.12.5/drake/man/load_mtcars_example.Rd | 2 drake-7.12.5/drake/man/long_hash.Rd | 2 drake-7.12.5/drake/man/make.Rd | 9 drake-7.12.5/drake/man/make_imports.Rd | 2 drake-7.12.5/drake/man/make_targets.Rd | 2 drake-7.12.5/drake/man/make_with_config.Rd | 2 drake-7.12.5/drake/man/manage_memory.Rd | 2 drake-7.12.5/drake/man/map_plan.Rd | 2 drake-7.12.5/drake/man/max_useful_jobs.Rd | 2 drake-7.12.5/drake/man/migrate_drake_project.Rd | 2 drake-7.12.5/drake/man/missed.Rd | 2 drake-7.12.5/drake/man/new_cache.Rd | 2 drake-7.12.5/drake/man/new_drake_settings.Rd | 7 drake-7.12.5/drake/man/no_deps.Rd | 2 drake-7.12.5/drake/man/outdated.Rd | 2 drake-7.12.5/drake/man/parallel_stages.Rd | 2 drake-7.12.5/drake/man/parallelism_choices.Rd | 2 drake-7.12.5/drake/man/plan.Rd | 2 drake-7.12.5/drake/man/plan_analyses.Rd | 2 drake-7.12.5/drake/man/plan_drake.Rd | 2 drake-7.12.5/drake/man/plan_summaries.Rd | 2 drake-7.12.5/drake/man/plan_to_code.Rd | 2 drake-7.12.5/drake/man/plan_to_notebook.Rd | 2 drake-7.12.5/drake/man/plot_graph.Rd | 2 drake-7.12.5/drake/man/predict_load_balancing.Rd | 2 drake-7.12.5/drake/man/predict_runtime.Rd | 2 drake-7.12.5/drake/man/predict_workers.Rd | 2 drake-7.12.5/drake/man/process_import.Rd | 2 drake-7.12.5/drake/man/progress.Rd | 2 drake-7.12.5/drake/man/prune_drake_graph.Rd | 2 drake-7.12.5/drake/man/r_make.Rd | 2 drake-7.12.5/drake/man/r_recipe_wildcard.Rd | 2 drake-7.12.5/drake/man/rate_limiting_times.Rd | 2 drake-7.12.5/drake/man/read_config.Rd | 2 drake-7.12.5/drake/man/read_drake_config.Rd | 2 drake-7.12.5/drake/man/read_drake_graph.Rd | 2 drake-7.12.5/drake/man/read_drake_meta.Rd | 2 drake-7.12.5/drake/man/read_drake_plan.Rd | 2 drake-7.12.5/drake/man/read_drake_seed.Rd | 2 drake-7.12.5/drake/man/read_graph.Rd | 2 drake-7.12.5/drake/man/read_plan.Rd | 2 drake-7.12.5/drake/man/read_trace.Rd | 2 drake-7.12.5/drake/man/readd.Rd | 2 drake-7.12.5/drake/man/recover_cache.Rd | 2 drake-7.12.5/drake/man/recoverable.Rd | 2 drake-7.12.5/drake/man/reduce_by.Rd | 2 drake-7.12.5/drake/man/reduce_plan.Rd | 2 drake-7.12.5/drake/man/reexports.Rd | 9 drake-7.12.5/drake/man/render_drake_ggraph.Rd | 2 drake-7.12.5/drake/man/render_drake_graph.Rd | 6 drake-7.12.5/drake/man/render_graph.Rd | 2 drake-7.12.5/drake/man/render_sankey_drake_graph.Rd | 2 drake-7.12.5/drake/man/render_static_drake_graph.Rd | 2 drake-7.12.5/drake/man/render_text_drake_graph.Rd | 2 drake-7.12.5/drake/man/rescue_cache.Rd | 2 drake-7.12.5/drake/man/rs_addin_loadd.Rd | 2 drake-7.12.5/drake/man/rs_addin_r_make.Rd | 2 drake-7.12.5/drake/man/rs_addin_r_outdated.Rd | 2 drake-7.12.5/drake/man/rs_addin_r_vis_drake_graph.Rd | 2 drake-7.12.5/drake/man/running.Rd | 2 drake-7.12.5/drake/man/sankey_drake_graph.Rd | 2 drake-7.12.5/drake/man/session.Rd | 2 drake-7.12.5/drake/man/shell_file.Rd | 2 drake-7.12.5/drake/man/short_hash.Rd | 2 drake-7.12.5/drake/man/show_source.Rd | 2 drake-7.12.5/drake/man/static_drake_graph.Rd | 2 drake-7.12.5/drake/man/subtargets.Rd | 2 drake-7.12.5/drake/man/summaries.Rd | 2 drake-7.12.5/drake/man/target.Rd | 2 drake-7.12.5/drake/man/target_namespaces.Rd | 2 drake-7.12.5/drake/man/text_drake_graph.Rd | 2 drake-7.12.5/drake/man/this_cache.Rd | 2 drake-7.12.5/drake/man/tracked.Rd | 2 drake-7.12.5/drake/man/transform_plan.Rd | 2 drake-7.12.5/drake/man/transformations.Rd | 2 drake-7.12.5/drake/man/trigger.Rd | 2 drake-7.12.5/drake/man/triggers.Rd | 2 drake-7.12.5/drake/man/type_sum.expr_list.Rd | 2 drake-7.12.5/drake/man/use_drake.Rd | 2 drake-7.12.5/drake/man/vis_drake_graph.Rd | 11 drake-7.12.5/drake/man/which_clean.Rd | 2 drake-7.12.5/drake/man/workflow.Rd | 2 drake-7.12.5/drake/man/workplan.Rd | 2 drake-7.12.5/drake/tests/testthat/test-3-utils.R | 19 drake-7.12.5/drake/tests/testthat/test-6-plans.R | 5 drake-7.12.5/drake/tests/testthat/test-7-dsl.R | 2 drake-7.12.5/drake/tests/testthat/test-9-dynamic.R | 16 250 files changed, 797 insertions(+), 698 deletions(-)
Title: Tools for Working with 'Taxonomic' Databases
Description: Tools for working with 'taxonomic' databases, including
utilities for downloading databases, loading them into various
'SQL' databases, cleaning up files, and providing a 'SQL' connection
that can be used to do 'SQL' queries directly or used in 'dplyr'.
Author: Scott Chamberlain [aut, cre],
Zebulun Arendsee [aut]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between taxizedb versions 0.2.0 dated 2020-08-13 and 0.2.2 dated 2020-08-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ tests/testthat/test-downstream.R | 1 + tests/testthat/test-rank_utils.R | 3 ++- 5 files changed, 18 insertions(+), 8 deletions(-)
Title: Nonparametric Methods for Directional Data
Description: Nonparametric kernel density estimation, bandwidth selection,
and other utilities for analyzing directional data. Implements the estimator
in Bai, Rao and Zhao (1987) <doi:10.1016/0047-259X(88)90113-3>, the
cross-validation bandwidth selectors in Hall, Watson and Cabrera (1987)
<doi:10.1093/biomet/74.4.751> and the plug-in bandwidth selectors in
García-Portugués (2013) <doi:10.1214/13-ejs821>.
Author: Eduardo García-Portugués [aut, cre]
(<https://orcid.org/0000-0002-9224-4111>)
Maintainer: Eduardo García-Portugués <edgarcia@est-econ.uc3m.es>
Diff between DirStats versions 0.1.5 dated 2020-08-24 and 0.1.6 dated 2020-08-26
DESCRIPTION | 12 +- MD5 | 6 - NEWS.md | 4 src/ribesl.f90 | 277 ++++++++++++++++++++++++++++++++++++++++++++++++++++----- 4 files changed, 269 insertions(+), 30 deletions(-)
Title: Customise the Appearance of 'shinydashboard' Applications using
Themes
Description: Allows manual creation of themes and logos to be used in
applications created using the 'shinydashboard' package. Removes the need to
change the underlying css code by wrapping it into a set of convenient R
functions.
Author: Nik Lilovski [aut, cre]
Maintainer: Nik Lilovski <nik.lilovski@outlook.com>
Diff between dashboardthemes versions 1.1.1 dated 2020-07-06 and 1.1.3 dated 2020-08-26
DESCRIPTION | 8 +- MD5 | 18 +++--- NEWS.md | 7 ++ R/CreateTheme_shinyDashboardThemeDIY.R | 8 +- README.md | 30 ++++++---- inst/doc/using_dashboardthemes.html | 4 - tests/testthat/test-CreateCss_cssGradientThreeColors.R | 2 tests/testthat/test-CreateTheme_shinyDashboardThemeDIY.R | 4 + tests/testthat/test-LintRules.R | 8 ++ tests/testthat/test-assets/CreateTheme_shinyDashboardThemeDIY/ExpectedOutput.css | 2 10 files changed, 55 insertions(+), 36 deletions(-)
More information about dashboardthemes at CRAN
Permanent link
Title: Czech Interest Rates
Description: Interface to interest rates as published by the Czech National Bank. Currently supported are the PRIBOR rates (PRague InterBank Offered Rate - the CZK member of the IBOR family of rates) and two-week repo rate - a key policy rate of CNB.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between czechrates versions 0.1.8 dated 2020-06-03 and 0.1.10 dated 2020-08-26
DESCRIPTION | 12 +- MD5 | 18 ++-- NEWS.md | 4 R/pribor.R | 4 R/repo2w.R | 6 - README.md | 3 build/vignette.rds |binary inst/doc/vignette.html | 212 ++++++++++++++++++++++++++----------------------- man/pribor.Rd | 2 man/repo2w.Rd | 2 10 files changed, 143 insertions(+), 120 deletions(-)
Title: Client for 'CCAFS' 'GCM' Data
Description: Client for Climate Change, Agriculture, and Food Security ('CCAFS')
General Circulation Models ('GCM') data. Data is stored in Amazon 'S3', from
which we provide functions to fetch data.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between ccafs versions 0.1.0 dated 2017-02-24 and 0.3.0 dated 2020-08-26
ccafs-0.1.0/ccafs/inst/doc/ccafs_vignette.Rmd |only ccafs-0.1.0/ccafs/inst/doc/ccafs_vignette.html |only ccafs-0.1.0/ccafs/inst/img |only ccafs-0.1.0/ccafs/inst/vign |only ccafs-0.1.0/ccafs/vignettes/ccafs_vignette.Rmd |only ccafs-0.1.0/ccafs/vignettes/img |only ccafs-0.3.0/ccafs/DESCRIPTION | 32 - ccafs-0.3.0/ccafs/LICENSE | 2 ccafs-0.3.0/ccafs/MD5 | 78 +-- ccafs-0.3.0/ccafs/NEWS.md | 8 ccafs-0.3.0/ccafs/R/cache_data.R | 5 ccafs-0.3.0/ccafs/R/caching.R | 23 - ccafs-0.3.0/ccafs/R/cc_data_fetch.R | 25 - ccafs-0.3.0/ccafs/R/cc_data_read.R | 14 ccafs-0.3.0/ccafs/R/cc_list_keys.R | 24 - ccafs-0.3.0/ccafs/R/cc_search.R | 9 ccafs-0.3.0/ccafs/R/ccafs-package.R | 24 - ccafs-0.3.0/ccafs/R/ccsearch.R | 292 +++++++------- ccafs-0.3.0/ccafs/R/raster-methods.R | 4 ccafs-0.3.0/ccafs/R/zzz.R | 7 ccafs-0.3.0/ccafs/README.md | 119 ----- ccafs-0.3.0/ccafs/build/vignette.rds |binary ccafs-0.3.0/ccafs/inst/doc/amazon_s3_keys.Rmd | 20 ccafs-0.3.0/ccafs/inst/doc/amazon_s3_keys.html | 388 +++++++++++-------- ccafs-0.3.0/ccafs/inst/doc/ccafs.Rmd |only ccafs-0.3.0/ccafs/inst/doc/ccafs.html |only ccafs-0.3.0/ccafs/man/cc_cache.Rd | 18 ccafs-0.3.0/ccafs/man/cc_data_fetch.Rd | 19 ccafs-0.3.0/ccafs/man/cc_data_read.Rd | 4 ccafs-0.3.0/ccafs/man/cc_list_keys.Rd | 20 ccafs-0.3.0/ccafs/man/cc_search.Rd | 22 - ccafs-0.3.0/ccafs/man/ccafs-package.Rd | 20 ccafs-0.3.0/ccafs/man/ccafs-search.Rd | 276 ++++++------- ccafs-0.3.0/ccafs/man/figures |only ccafs-0.3.0/ccafs/tests/testthat/test-cc_list_keys.R | 4 ccafs-0.3.0/ccafs/tests/testthat/test-cc_search.R | 13 ccafs-0.3.0/ccafs/vignettes/amazon_s3_keys.Rmd | 20 ccafs-0.3.0/ccafs/vignettes/ccafs.Rmd |only ccafs-0.3.0/ccafs/vignettes/ccafs.Rmd.og |only 39 files changed, 727 insertions(+), 763 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-15 3.3.0
2020-05-27 3.2.0.1
2020-04-12 3.2.0
2020-01-17 3.1.0.1
2020-01-16 3.1.0
2019-10-30 3.0.3.2.1
2019-05-16 3.0.3.2
2019-03-04 3.0.3.1
2019-01-07 3.0.2.1
2018-12-10 3.0.2
2018-11-26 3.0.1
2018-09-25 2.13.2
2018-09-17 2.13.1
2018-07-30 2.12.7
2017-10-06 2.12.6
2017-09-21 2.12.5
2017-09-01 2.12.4
2017-08-01 2.12.3
2017-07-09 2.12.2
2017-06-16 2.12.1
2017-03-21 2.11.1
2017-03-12 2.11.0
2017-03-07 2.10.6
2017-02-03 2.10.5
2017-01-04 2.10.4
2016-10-19 2.10.3
2016-07-25 2.9.4
2016-07-08 2.9.3.1
2016-07-07 2.9.3
2016-01-13 2.8.3
2015-12-08 2.8.2
2015-11-21 2.8.1
2015-09-01 2.7.6.1
2015-03-06 2.7.5
2015-02-25 2.7.4
2014-10-16 2.7.2
2014-10-08 2.7.1
2014-08-30 2.7
2014-07-23 2.6.1
2014-03-24 2.6
2014-02-13 2.5.1
2013-11-20 2.5
2013-04-26 2.4.1
2013-04-05 2.4
2013-02-09 2.3
2012-11-27 2.2-27
2012-10-19 2.2-26
2012-09-06 2.2-25
2012-07-25 2.2-24
2012-04-05 2.2-23
2012-03-09 2.2-22
2012-02-06 2.2-21
2011-10-26 2.2-20
2011-10-24 2.2-19
2011-09-01 2.2-18
2011-08-02 2.2-17
2010-10-13 2.2-16
2010-05-18 2.2-14
2010-05-01 2.2-13
2010-01-11 2.2-12
2009-10-23 2.2-9.5
2008-07-28 2.1-1
2005-11-21 2.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-23 0.2.2
2019-01-09 0.2.1
2019-01-06 0.2.0
2018-07-22 0.1.0
Title: Power Calculations for RD Designs
Description: The regression discontinuity (RD) design is a popular quasi-experimental design for causal inference and policy evaluation. The 'rdpower' package provides tools to perform power and sample size calculations in RD designs: rdpower() calculates the power of an RD design and rdsampsi() calculates the required sample size to achieve a desired power. See Cattaneo, Titiunik and Vazquez-Bare (2019) <https://rdpackages.github.io/references/Cattaneo-Titiunik-VazquezBare_2019_Stata.pdf> for further methodological details.
Author: Matias D. Cattaneo, Rocio Titiunik, Gonzalo Vazquez-Bare
Maintainer: Gonzalo Vazquez-Bare <gvazquez@econ.ucsb.edu>
Diff between rdpower versions 0.5 dated 2020-04-05 and 1.0 dated 2020-08-26
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 24 ++++++++++++------------ R/rdpower.R | 4 ++-- R/rdpower_fun.R | 2 +- R/rdpower_package.R | 13 +++++++------ R/rdsampsi.R | 4 ++-- man/rdpower-package.Rd | 10 +++++----- man/rdpower.Rd | 2 +- man/rdsampsi.Rd | 2 +- 10 files changed, 45 insertions(+), 44 deletions(-)
Title: Analysis of RD Designs with Multiple Cutoffs or Scores
Description: The regression discontinuity (RD) design is a popular quasi-experimental design for causal inference and policy evaluation. The 'rdmulti' package provides tools to analyze RD designs with multiple cutoffs or scores: rdmc() estimates pooled and cutoff specific effects for multi-cutoff designs, rdmcplot() draws RD plots for multi-cutoff designs and rdms() estimates effects in cumulative cutoffs or multi-score designs. See Cattaneo, Titiunik and Vazquez-Bare (2020) <https://rdpackages.github.io/references/Cattaneo-Titiunik-VazquezBare_2020_Stata.pdf> for further methodological details.
Author: Matias D. Cattaneo, Rocio Titiunik, Gonzalo Vazquez-Bare
Maintainer: Gonzalo Vazquez-Bare <gvazquez@econ.ucsb.edu>
Diff between rdmulti versions 0.5 dated 2020-04-24 and 0.6 dated 2020-08-26
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/rdmc.R | 4 ++-- R/rdmcplot.R | 4 ++-- R/rdms.R | 4 ++-- R/rdmulti_package.R | 20 ++++++++++++++++---- man/rdmc.Rd | 2 +- man/rdmcplot.Rd | 2 +- man/rdms.Rd | 2 +- man/rdmulti-package.Rd | 18 +++++++++++++++--- 10 files changed, 54 insertions(+), 30 deletions(-)
Title: Local Randomization Methods for RD Designs
Description: The regression discontinuity (RD) design is a popular quasi-experimental design for causal inference and policy evaluation. Under the local randomization approach, RD designs can be interpreted as randomized experiments inside a window around the cutoff. This package provides tools to perform randomization inference for RD designs under local randomization: rdrandinf() to perform hypothesis testing using randomization inference, rdwinselect() to select a window around the cutoff in which randomization is likely to hold, rdsensitivity() to assess the sensitivity of the results to different window lengths and null hypotheses and rdrbounds() to construct Rosenbaum bounds for sensitivity to unobserved confounders. See Cattaneo, Titiunik and Vazquez-Bare (2016) <https://rdpackages.github.io/references/Cattaneo-Titiunik-VazquezBare_2016_Stata.pdf> for further methodological details.
Author: Matias D. Cattaneo, Rocio Titiunik, Gonzalo Vazquez-Bare
Maintainer: Gonzalo Vazquez-Bare <gvazquez@econ.ucsb.edu>
Diff between rdlocrand versions 0.7 dated 2020-08-01 and 0.7.1 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/rdlocrand_fun.R | 2 +- R/rdlocrand_package.R | 12 ++++++------ R/rdrandinf.R | 8 ++------ R/rdrbounds.R | 9 +++------ R/rdsensitivity.R | 6 ++---- R/rdwinselect.R | 6 ++---- man/rdlocrand-package.Rd | 10 +++++----- man/rdrandinf.Rd | 6 +----- man/rdrbounds.Rd | 8 ++------ man/rdsensitivity.Rd | 6 +----- man/rdwinselect.Rd | 6 +----- 13 files changed, 42 insertions(+), 69 deletions(-)
Title: A Framework for Various Types of Mortality / Life Tables
Description: Classes to implement and plot cohort life tables
for actuarial calculations. In particular, birth-year dependent mortality
tables using a yearly trend to extrapolate from a base year are implemented,
as well as period life table, cohort life tables using an age shift, and
merged life tables.
Author: Reinhold Kainhofer [aut, cre]
Maintainer: Reinhold Kainhofer <reinhold@kainhofer.com>
Diff between MortalityTables versions 1.0 dated 2018-04-03 and 2.0 dated 2020-08-26
DESCRIPTION | 26 MD5 | 181 - NAMESPACE | 22 R/DocumentData.R |only R/ages.R | 8 R/commutationNumbers.R | 9 R/fillAges.R | 1 R/getOmega.R | 8 R/getPeriodTable.R | 7 R/makeQxDataFrame.R | 45 R/mortalityTable.R | 9 R/mortalityTable.observed.R | 145 - R/mortalityTable.period.R | 5 R/mortalityTables.list.R | 24 R/mortalityTables.load.R | 39 R/pensionTable.R | 67 R/plotMortalityTableComparisons.R | 10 R/plotMortalityTables.R | 83 R/plotMortalityTrend.R | 113 R/utilityFunctions.R |only R/whittaker.mortalityTable.R | 36 README.md | 2 build/vignette.rds |binary data |only inst/doc/using-the-mortalityTables-package.R | 166 + inst/doc/using-the-mortalityTables-package.Rmd | 360 ++ inst/doc/using-the-mortalityTables-package.html | 1211 +++++++--- inst/extdata/Austria_Census_Unisex.csv |only inst/extdata/Austria_Population_Forecast.csv |only inst/extdata/Austria_Population_MCMC2018.csv |only inst/extdata/Austria_Population_Observation_F.csv |only inst/extdata/Austria_Population_Observation_M.csv |only inst/extdata/Austria_Population_Observation_U.csv |only inst/extdata/MortalityTables_Austria_Annuities_AVOe1996R.R | 50 inst/extdata/MortalityTables_Austria_Annuities_AVOe2005R.R | 124 - inst/extdata/MortalityTables_Austria_Annuities_EROMF.R | 38 inst/extdata/MortalityTables_Austria_Annuities_RR67.R | 9 inst/extdata/MortalityTables_Austria_Census.R | 134 - inst/extdata/MortalityTables_Austria_Endowments_ADSt2426_2Lives.R | 6 inst/extdata/MortalityTables_Austria_PopulationForecast.R |only inst/extdata/MortalityTables_Austria_PopulationMCMC.R |only inst/extdata/MortalityTables_Austria_PopulationObserved.R |only inst/extdata/MortalityTables_Germany_Annuities_DAV1994R.R | 20 inst/extdata/MortalityTables_Germany_Annuities_DAV2004R.R | 48 inst/extdata/MortalityTables_Germany_Census.R | 66 inst/extdata/MortalityTables_Germany_Endowments_DAV1994T.R | 24 inst/extdata/MortalityTables_Germany_Endowments_DAV2008T.R | 73 inst/extdata/MortalityTables_USA_Annuities_1971IAM.R | 32 inst/extdata/MortalityTables_USA_Annuities_1983a.R | 32 inst/extdata/MortalityTables_USA_Annuities_1994GAR.R | 32 inst/extdata/MortalityTables_USA_Annuities_2012IAM.R | 32 inst/extdata/MortalityTables_USA_Annuities_Annuity2000.R | 32 inst/extdata/PensionTables_USA_PensionPlan_RP2014.R | 2 inst/extdata/USA_PensionPlans_MP2014_Female.csv | 2 inst/extdata/USA_PensionPlans_MP2014_Male.csv | 2 man/MortalityTables-package.Rd | 6 man/PopulationData.AT2017.Rd |only man/ageShift.Rd | 1 man/ages.Rd | 9 man/baseTable.Rd | 1 man/baseYear.Rd | 1 man/calculateImprovements.Rd | 4 man/commutationNumbers.Rd | 7 man/deathProbabilities.Rd | 27 man/fillAges.Rd | 3 man/fitExpExtrapolation.Rd |only man/getCohortTable.Rd | 1 man/getOmega.Rd | 9 man/getPeriodTable.Rd | 3 man/lifeTable.Rd | 1 man/mT.cleanup.Rd |only man/mT.extrapolateProbsExp.Rd |only man/mT.extrapolateTrendExp.Rd |only man/mT.fillAges.Rd |only man/mT.fitExtrapolationLaw.Rd |only man/mT.round.Rd |only man/mT.scaleProbs.Rd |only man/mT.setDimInfo.Rd |only man/mT.setName.Rd |only man/mT.setTrend.Rd |only man/mT.switchover.Rd |only man/mT.translate.Rd |only man/mortalityImprovement.Rd | 4 man/mortalityTable-class.Rd | 4 man/mortalityTable.NA.Rd |only man/mortalityTable.observed-class.Rd |only man/mortalityTable.once.Rd | 7 man/mortalityTable.onceAndFuture.Rd | 7 man/mortalityTables.list.Rd | 11 man/mortalityTables.load.Rd | 12 man/pT.calculateTotalMortality.Rd |only man/pT.getSubTable.Rd |only man/pT.setDimInfo.Rd |only man/pensionTable-class.Rd | 2 man/pensionTables.list.Rd | 10 man/pensionTables.load.Rd | 8 man/periodDeathProbabilities.Rd | 36 man/periodTransitionProbabilities.Rd | 14 man/plotMortalityTableComparisons.Rd | 24 man/plotMortalityTables.Rd | 26 man/plotMortalityTrend.Rd | 26 man/setLoading.Rd | 1 man/setModification.Rd | 1 man/transitionProbabilities.Rd | 16 man/undampenTrend.Rd | 1 man/whittaker.mortalityTable.Rd | 14 vignettes/using-the-mortalityTables-package.Rmd | 360 ++ 107 files changed, 3022 insertions(+), 970 deletions(-)
More information about MortalityTables at CRAN
Permanent link
Title: 'DrugBank' Database XML Parser
Description: This tool is for parsing the 'DrugBank' XML database <https://www.drugbank.ca/>. The parsed
data are then returned in a proper 'R' dataframe with the ability to save
them in a given database.
Author: Mohammed Ali [aut, cre],
Ali Ezzat [aut],
Hao Zhu [rev],
Emma Mendelsohn [rev]
Maintainer: Mohammed Ali <moh_fcis@yahoo.com>
Diff between dbparser versions 1.1.2 dated 2020-06-08 and 1.2.0 dated 2020-08-26
dbparser-1.1.2/dbparser/R/drug_carrier_node_parser.R |only dbparser-1.1.2/dbparser/R/drug_enzyme_node_parser.R |only dbparser-1.1.2/dbparser/R/drug_organizm_sub_node_parser.R |only dbparser-1.1.2/dbparser/R/drug_pathway_node_parser.R |only dbparser-1.1.2/dbparser/R/drug_polypeptide_sub_node_parser.R |only dbparser-1.1.2/dbparser/R/drug_targets_node_parser.R |only dbparser-1.1.2/dbparser/R/drug_transporter_node_parser.R |only dbparser-1.1.2/dbparser/man/carriers.Rd |only dbparser-1.1.2/dbparser/man/carriers_actions.Rd |only dbparser-1.1.2/dbparser/man/carriers_articles.Rd |only dbparser-1.1.2/dbparser/man/carriers_links.Rd |only dbparser-1.1.2/dbparser/man/carriers_polypeptide.Rd |only dbparser-1.1.2/dbparser/man/carriers_polypeptide_ext_id.Rd |only dbparser-1.1.2/dbparser/man/carriers_polypeptides_go.Rd |only dbparser-1.1.2/dbparser/man/carriers_polypeptides_pfams.Rd |only dbparser-1.1.2/dbparser/man/carriers_polypeptides_syn.Rd |only dbparser-1.1.2/dbparser/man/carriers_textbooks.Rd |only dbparser-1.1.2/dbparser/man/drug.Rd |only dbparser-1.1.2/dbparser/man/drug_all.Rd |only dbparser-1.1.2/dbparser/man/drug_articles.Rd |only dbparser-1.1.2/dbparser/man/drug_books.Rd |only dbparser-1.1.2/dbparser/man/drug_links.Rd |only dbparser-1.1.2/dbparser/man/enzymes.Rd |only dbparser-1.1.2/dbparser/man/enzymes_actions.Rd |only dbparser-1.1.2/dbparser/man/enzymes_articles.Rd |only dbparser-1.1.2/dbparser/man/enzymes_links.Rd |only dbparser-1.1.2/dbparser/man/enzymes_polypeptide.Rd |only dbparser-1.1.2/dbparser/man/enzymes_polypeptide_ext_ident.Rd |only dbparser-1.1.2/dbparser/man/enzymes_polypeptide_go.Rd |only dbparser-1.1.2/dbparser/man/enzymes_polypeptide_pfams.Rd |only dbparser-1.1.2/dbparser/man/enzymes_polypeptide_syn.Rd |only dbparser-1.1.2/dbparser/man/enzymes_textbooks.Rd |only dbparser-1.1.2/dbparser/man/targets.Rd |only dbparser-1.1.2/dbparser/man/targets_actions.Rd |only dbparser-1.1.2/dbparser/man/targets_articles.Rd |only dbparser-1.1.2/dbparser/man/targets_links.Rd |only dbparser-1.1.2/dbparser/man/targets_polypeptide.Rd |only dbparser-1.1.2/dbparser/man/targets_polypeptide_ext_ident.Rd |only dbparser-1.1.2/dbparser/man/targets_polypeptide_go.Rd |only dbparser-1.1.2/dbparser/man/targets_polypeptide_pfams.Rd |only dbparser-1.1.2/dbparser/man/targets_polypeptide_syn.Rd |only dbparser-1.1.2/dbparser/man/targets_textbooks.Rd |only dbparser-1.1.2/dbparser/man/transporters.Rd |only dbparser-1.1.2/dbparser/man/transporters_actions.Rd |only dbparser-1.1.2/dbparser/man/transporters_articles.Rd |only dbparser-1.1.2/dbparser/man/transporters_links.Rd |only dbparser-1.1.2/dbparser/man/transporters_polypep_ex_ident.Rd |only dbparser-1.1.2/dbparser/man/transporters_polypeptide.Rd |only dbparser-1.1.2/dbparser/man/transporters_polypeptide_go.Rd |only dbparser-1.1.2/dbparser/man/transporters_polypeptide_pfams.Rd |only dbparser-1.1.2/dbparser/man/transporters_polypeptide_syn.Rd |only dbparser-1.1.2/dbparser/man/transporters_textbooks.Rd |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_all_nodes_parser.R |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_carrier_node_parser_biotech.R |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_carrier_node_parser_small_molecule.R |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_enzyme_node_parser_biotech.R |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_enzyme_node_parser_small_molecule.R |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_targets_node_parser_biotech.R |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_targets_node_parser_small_molecule.R |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_transporter_node_parser_biotech.R |only dbparser-1.1.2/dbparser/tests/testthat/test_drug_transporter_node_parser_small_molecule.R |only dbparser-1.2.0/dbparser/DESCRIPTION | 17 dbparser-1.2.0/dbparser/MD5 | 226 dbparser-1.2.0/dbparser/NAMESPACE | 54 dbparser-1.2.0/dbparser/NEWS.md | 33 dbparser-1.2.0/dbparser/R/abstract_parser.R |only dbparser-1.2.0/dbparser/R/cett_actions_parsers.R |only dbparser-1.2.0/dbparser/R/cett_general_information_parsers.R |only dbparser-1.2.0/dbparser/R/cett_polypeptide_general_infromation_parsers.R |only dbparser-1.2.0/dbparser/R/cett_polypeptide_others_parsers.R |only dbparser-1.2.0/dbparser/R/dbparser.R | 2 dbparser-1.2.0/dbparser/R/drug_all_nodes_parser.R | 2304 +++++--- dbparser-1.2.0/dbparser/R/drug_atc_codes_node_parser.R | 157 dbparser-1.2.0/dbparser/R/drug_classfication_node_parser.R | 200 dbparser-1.2.0/dbparser/R/drug_common_utilities.R | 36 dbparser-1.2.0/dbparser/R/drug_main_node_parser.R | 171 dbparser-1.2.0/dbparser/R/drug_manufacturer_node_parser.R | 134 dbparser-1.2.0/dbparser/R/drug_parsers.R | 2700 ++-------- dbparser-1.2.0/dbparser/R/drug_pathway_node_parsers.R |only dbparser-1.2.0/dbparser/R/drug_pharmacology_parser.R |only dbparser-1.2.0/dbparser/R/drug_price_node_parser.R | 139 dbparser-1.2.0/dbparser/R/drug_reaction_node_parser.R | 282 - dbparser-1.2.0/dbparser/R/drug_sequence_node_parser.R | 149 dbparser-1.2.0/dbparser/R/drug_synonym_node_parser.R | 85 dbparser-1.2.0/dbparser/R/imports.R | 5 dbparser-1.2.0/dbparser/R/references_parsers.R |only dbparser-1.2.0/dbparser/README.md | 12 dbparser-1.2.0/dbparser/inst/doc/Database_Saving.R | 6 dbparser-1.2.0/dbparser/inst/doc/Database_Saving.Rmd | 6 dbparser-1.2.0/dbparser/inst/doc/Database_Saving.html | 10 dbparser-1.2.0/dbparser/inst/doc/dbparser.Rmd | 4 dbparser-1.2.0/dbparser/inst/doc/dbparser.html | 8 dbparser-1.2.0/dbparser/man/articles.Rd |only dbparser-1.2.0/dbparser/man/attachments.Rd |only dbparser-1.2.0/dbparser/man/books.Rd |only dbparser-1.2.0/dbparser/man/cett.Rd |only dbparser-1.2.0/dbparser/man/cett_actions_doc.Rd |only dbparser-1.2.0/dbparser/man/cett_doc.Rd |only dbparser-1.2.0/dbparser/man/cett_ex_identity_doc.Rd |only dbparser-1.2.0/dbparser/man/cett_go_doc.Rd |only dbparser-1.2.0/dbparser/man/cett_poly_doc.Rd |only dbparser-1.2.0/dbparser/man/cett_poly_pfms_doc.Rd |only dbparser-1.2.0/dbparser/man/cett_poly_syn_doc.Rd |only dbparser-1.2.0/dbparser/man/dbparser.Rd | 104 dbparser-1.2.0/dbparser/man/drug_affected_organisms.Rd | 233 dbparser-1.2.0/dbparser/man/drug_ahfs_codes.Rd | 227 dbparser-1.2.0/dbparser/man/drug_atc_codes.Rd | 231 dbparser-1.2.0/dbparser/man/drug_calc_prop.Rd | 238 dbparser-1.2.0/dbparser/man/drug_categories.Rd | 229 dbparser-1.2.0/dbparser/man/drug_classification.Rd | 237 dbparser-1.2.0/dbparser/man/drug_dosages.Rd | 230 dbparser-1.2.0/dbparser/man/drug_element.Rd | 190 dbparser-1.2.0/dbparser/man/drug_element_options.Rd | 50 dbparser-1.2.0/dbparser/man/drug_ex_identity.Rd | 234 dbparser-1.2.0/dbparser/man/drug_exp_prop.Rd | 265 dbparser-1.2.0/dbparser/man/drug_external_links.Rd | 229 dbparser-1.2.0/dbparser/man/drug_food_interactions.Rd | 231 dbparser-1.2.0/dbparser/man/drug_general_information.Rd |only dbparser-1.2.0/dbparser/man/drug_groups.Rd | 228 dbparser-1.2.0/dbparser/man/drug_interactions.Rd | 234 dbparser-1.2.0/dbparser/man/drug_intern_brand.Rd | 236 dbparser-1.2.0/dbparser/man/drug_manufacturers.Rd | 228 dbparser-1.2.0/dbparser/man/drug_mixtures.Rd | 233 dbparser-1.2.0/dbparser/man/drug_packagers.Rd | 229 dbparser-1.2.0/dbparser/man/drug_patents.Rd | 241 dbparser-1.2.0/dbparser/man/drug_pathway.Rd | 173 dbparser-1.2.0/dbparser/man/drug_pathway_drugs.Rd | 168 dbparser-1.2.0/dbparser/man/drug_pathway_enzyme.Rd | 166 dbparser-1.2.0/dbparser/man/drug_pdb_entries.Rd | 227 dbparser-1.2.0/dbparser/man/drug_pharmacology.Rd |only dbparser-1.2.0/dbparser/man/drug_prices.Rd | 199 dbparser-1.2.0/dbparser/man/drug_products.Rd | 279 - dbparser-1.2.0/dbparser/man/drug_reactions.Rd | 206 dbparser-1.2.0/dbparser/man/drug_reactions_enzymes.Rd | 202 dbparser-1.2.0/dbparser/man/drug_salts.Rd | 246 dbparser-1.2.0/dbparser/man/drug_sequences.Rd | 201 dbparser-1.2.0/dbparser/man/drug_snp_adverse_reactions.Rd | 243 dbparser-1.2.0/dbparser/man/drug_snp_effects.Rd | 239 dbparser-1.2.0/dbparser/man/drug_syn.Rd | 231 dbparser-1.2.0/dbparser/man/drugs.Rd |only dbparser-1.2.0/dbparser/man/links.Rd |only dbparser-1.2.0/dbparser/man/read_drugbank_xml_db.Rd | 68 dbparser-1.2.0/dbparser/man/references.Rd |only dbparser-1.2.0/dbparser/man/run_all_parsers.Rd |only dbparser-1.2.0/dbparser/tests/testthat/test-all-nodes-parser.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-actions-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-actions-parsers-small-molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-general-information-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-general-information-parsers-small-molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-polypeptide-general-infromation-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-polypeptide-general-infromation-parsers-small-molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-polypeptide-others-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test-cett-polypeptide-others-parsers-small-molecule.R |only dbparser-1.2.0/dbparser/tests/testthat/test-references-parsers-biotech.R |only dbparser-1.2.0/dbparser/tests/testthat/test_drug_main_node_parser_biotech.R | 114 dbparser-1.2.0/dbparser/tests/testthat/test_drug_main_node_parser_small_molecule.R | 83 dbparser-1.2.0/dbparser/tests/testthat/test_drug_pathway_node_parser_biotech.R | 6 dbparser-1.2.0/dbparser/tests/testthat/test_drug_pathway_node_parser_small_molecule.R | 6 dbparser-1.2.0/dbparser/tests/testthat/test_drug_reaction_node_parser_biotech.R | 4 dbparser-1.2.0/dbparser/tests/testthat/test_drug_reaction_node_parser_small_molecule.R | 4 dbparser-1.2.0/dbparser/vignettes/Database_Saving.Rmd | 6 dbparser-1.2.0/dbparser/vignettes/dbparser.Rmd | 4 162 files changed, 6880 insertions(+), 7492 deletions(-)
Title: Selected 'Drugbank' Drugs for COVID-19 Treatment Related Data in
R Format
Description: Provides different datasets parsed from 'Drugbank'
<https://www.drugbank.ca/covid-19> database using 'dbparser' package.
It is a smaller version from 'dbdataset' package. It contains only information
about COVID-19 possible treatment.
Author: Mohammed Ali [aut, cre]
Maintainer: Mohammed Ali <moh_fcis@yahoo.com>
Diff between covid19dbcand versions 0.1.0 dated 2020-06-25 and 0.1.1 dated 2020-08-26
covid19dbcand-0.1.0/covid19dbcand/inst/doc/Example.R |only covid19dbcand-0.1.0/covid19dbcand/inst/doc/Example.Rmd |only covid19dbcand-0.1.0/covid19dbcand/inst/doc/Example.html |only covid19dbcand-0.1.0/covid19dbcand/vignettes/Example.Rmd |only covid19dbcand-0.1.1/covid19dbcand/DESCRIPTION | 12 covid19dbcand-0.1.1/covid19dbcand/MD5 | 214 ++-- covid19dbcand-0.1.1/covid19dbcand/NEWS.md | 8 covid19dbcand-0.1.1/covid19dbcand/R/covid19dbcand.R | 4 covid19dbcand-0.1.1/covid19dbcand/R/data.R | 481 +++++----- covid19dbcand-0.1.1/covid19dbcand/README.md | 51 - covid19dbcand-0.1.1/covid19dbcand/build/vignette.rds |binary covid19dbcand-0.1.1/covid19dbcand/data/AHFS_Codes_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/ATC_Codes_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Actions_Carrier_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Actions_Enzyme_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Actions_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Actions_Transporter_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Affected_Organisms_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Articles_Carrier_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Articles_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Articles_Enzyme_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Articles_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Articles_Transporter_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Attachments.rda |only covid19dbcand-0.1.1/covid19dbcand/data/Attachments_Carriers.rda |only covid19dbcand-0.1.1/covid19dbcand/data/Attachments_Enzymes.rda |only covid19dbcand-0.1.1/covid19dbcand/data/Attachments_Targets.rda |only covid19dbcand-0.1.1/covid19dbcand/data/Attachments_Transporters.rda |only covid19dbcand-0.1.1/covid19dbcand/data/Calculated_Properties_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Carriers_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Categories_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Classifications_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Dosages_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Drugs.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Enzymes_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Enzymes_Pathway_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Enzymes_Reactions_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Experimental_Properties_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/External_Identifiers_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/External_Identifiers_Polypeptide_Carrier_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/External_Identifiers_Polypeptide_Enzyme_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/External_Identifiers_Polypeptide_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/External_Identifiers_Transporter_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/External_Links_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Food_Interactions_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/GO_Classifiers_Polypeptide_Carrier_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/GO_Classifiers_Polypeptide_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/GO_Classifiers_Polypeptide_Transporter_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/GO_Classifiers_Polypeptides_Enzyme_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Groups_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Interactions_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/International_Brands_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Links_Carrier_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Links_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Links_Enzyme_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Links_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Links_Transporter_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Manufacturers_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Mixtures_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/PDB_Entries_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/PFAMS_Polypeptid_Transporter_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/PFAMS_Polypeptide_Carrier_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/PFAMS_Polypeptide_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/PFAMS_Polypeptides_Enzyme_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Packagers_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Patents_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Pharmacology.rda |only covid19dbcand-0.1.1/covid19dbcand/data/Polypeptide_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Polypeptides_Enzyme_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Polypeptides_Transporter_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Prices_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Products_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Reactions_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Salts_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Sequences_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Synonyms_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Synonyms_Polypeptide_Carrier_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Synonyms_Polypeptide_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Synonyms_Polypeptide_Transporter_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Synonyms_Polypeptides_Enzyme_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Targets_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Textbooks_Target_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/data/Transporters_Drug.rda |binary covid19dbcand-0.1.1/covid19dbcand/inst/doc/covid19dbcand.R |only covid19dbcand-0.1.1/covid19dbcand/inst/doc/covid19dbcand.Rmd |only covid19dbcand-0.1.1/covid19dbcand/inst/doc/covid19dbcand.html |only covid19dbcand-0.1.1/covid19dbcand/man/ATC_Codes_Drug.Rd | 4 covid19dbcand-0.1.1/covid19dbcand/man/Calculated_Properties_Drug.Rd | 74 - covid19dbcand-0.1.1/covid19dbcand/man/Categories_Drug.Rd | 4 covid19dbcand-0.1.1/covid19dbcand/man/Drugs.Rd | 104 -- covid19dbcand-0.1.1/covid19dbcand/man/International_Brands_Drug.Rd | 2 covid19dbcand-0.1.1/covid19dbcand/man/Manufacturers_Drug.Rd | 2 covid19dbcand-0.1.1/covid19dbcand/man/Packagers_Drug.Rd | 2 covid19dbcand-0.1.1/covid19dbcand/man/Patents_Drug.Rd | 8 covid19dbcand-0.1.1/covid19dbcand/man/Pathways_Drug.Rd | 6 covid19dbcand-0.1.1/covid19dbcand/man/Pharmacology.Rd |only covid19dbcand-0.1.1/covid19dbcand/man/Products_Drug.Rd | 24 covid19dbcand-0.1.1/covid19dbcand/man/Reactions_Drug.Rd | 8 covid19dbcand-0.1.1/covid19dbcand/man/SNP_Adverse_Drug_Reactions_Drug.Rd | 8 covid19dbcand-0.1.1/covid19dbcand/man/SNP_Effects_Drug.Rd | 10 covid19dbcand-0.1.1/covid19dbcand/man/Salts_Drug.Rd | 8 covid19dbcand-0.1.1/covid19dbcand/man/Sequences_Drug.Rd | 4 covid19dbcand-0.1.1/covid19dbcand/man/Synonyms_Drug.Rd | 4 covid19dbcand-0.1.1/covid19dbcand/man/actions.Rd | 6 covid19dbcand-0.1.1/covid19dbcand/man/articles.Rd | 10 covid19dbcand-0.1.1/covid19dbcand/man/attachments.Rd |only covid19dbcand-0.1.1/covid19dbcand/man/books.Rd | 2 covid19dbcand-0.1.1/covid19dbcand/man/cett.Rd | 8 covid19dbcand-0.1.1/covid19dbcand/man/covid19dbcand.Rd | 4 covid19dbcand-0.1.1/covid19dbcand/man/ext_id.Rd | 18 covid19dbcand-0.1.1/covid19dbcand/man/go.Rd | 8 covid19dbcand-0.1.1/covid19dbcand/man/links.Rd | 10 covid19dbcand-0.1.1/covid19dbcand/man/pfam.Rd | 8 covid19dbcand-0.1.1/covid19dbcand/man/poly_syn.Rd | 8 covid19dbcand-0.1.1/covid19dbcand/man/polypeptide.Rd | 18 covid19dbcand-0.1.1/covid19dbcand/vignettes/covid19dbcand.Rmd |only 116 files changed, 591 insertions(+), 551 deletions(-)
Title: Do a Git Style Diff of the Rows Between Two Dataframes with
Similar Structure
Description: Compares two dataframes which have the same column
structure to show the rows that have changed. Also gives a git style diff format
to quickly see what has changed in addition to summary statistics.
Author: Alex Joseph [aut, cre]
Maintainer: Alex Joseph <alexsanjoseph@gmail.com>
Diff between compareDF versions 2.2.0 dated 2020-06-07 and 2.3.0 dated 2020-08-26
DESCRIPTION | 16 +++--- LICENSE | 4 - MD5 | 19 +++---- NAMESPACE | 26 +++++++++- NEWS.md | 5 + R/fnsComparison.R | 93 +++++++++++++++++++++++++----------- R/fnsOutputs.R | 22 +++++++- man/compare_df.Rd | 3 + man/create_wide_output.Rd |only tests/testthat/test-fnsComparison.R | 70 ++++++++++++++++++++++++--- tests/testthat/test-fnsOutputs.R | 47 ++++++++++++++++-- 11 files changed, 246 insertions(+), 59 deletions(-)
Title: Tidy IP Addresses
Description: Classes and functions for working with IP (Internet
Protocol) addresses and networks, inspired by the Python 'ipaddress'
module. Offers full support for both IPv4 and IPv6 (Internet Protocol
versions 4 and 6) address spaces. It is specifically designed to work
well with the 'tidyverse'.
Author: David Hall [aut, cre] (<https://orcid.org/0000-0002-2193-0480>)
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between ipaddress versions 0.4.0 dated 2020-08-06 and 0.5.0 dated 2020-08-26
ipaddress-0.4.0/ipaddress/R/hostname.R |only ipaddress-0.4.0/ipaddress/R/vctrs-arithmetic.R |only ipaddress-0.4.0/ipaddress/src/IpAddressVector.cpp |only ipaddress-0.4.0/ipaddress/src/IpAddressVector.h |only ipaddress-0.4.0/ipaddress/src/IpNetworkVector.cpp |only ipaddress-0.4.0/ipaddress/src/IpNetworkVector.h |only ipaddress-0.4.0/ipaddress/src/encoding.h |only ipaddress-0.4.0/ipaddress/src/masking.h |only ipaddress-0.4.0/ipaddress/src/utils.cpp |only ipaddress-0.4.0/ipaddress/src/utils.h |only ipaddress-0.4.0/ipaddress/src/wrapper.cpp |only ipaddress-0.4.0/ipaddress/tests/testthat/test-arithmetic.R |only ipaddress-0.4.0/ipaddress/tests/testthat/test-hostname.R |only ipaddress-0.5.0/ipaddress/DESCRIPTION | 12 ipaddress-0.5.0/ipaddress/MD5 | 160 +-- ipaddress-0.5.0/ipaddress/NAMESPACE | 10 ipaddress-0.5.0/ipaddress/NEWS.md | 66 - ipaddress-0.5.0/ipaddress/R/RcppExports.R | 188 ++- ipaddress-0.5.0/ipaddress/R/collapse_exclude.R |only ipaddress-0.5.0/ipaddress/R/common_network.R | 4 ipaddress-0.5.0/ipaddress/R/data.R |only ipaddress-0.5.0/ipaddress/R/ip_address.R | 27 ipaddress-0.5.0/ipaddress/R/ip_interface.R | 23 ipaddress-0.5.0/ipaddress/R/ip_network.R | 20 ipaddress-0.5.0/ipaddress/R/ip_version.R | 8 ipaddress-0.5.0/ipaddress/R/ipv6_transition.R | 14 ipaddress-0.5.0/ipaddress/R/network_mask.R | 12 ipaddress-0.5.0/ipaddress/R/network_size.R | 8 ipaddress-0.5.0/ipaddress/R/operators.R |only ipaddress-0.5.0/ipaddress/R/other_repr.R | 156 ++- ipaddress-0.5.0/ipaddress/R/reserved.R | 100 + ipaddress-0.5.0/ipaddress/R/sample.R | 12 ipaddress-0.5.0/ipaddress/R/sequence.R | 6 ipaddress-0.5.0/ipaddress/R/summarize_address_range.R | 4 ipaddress-0.5.0/ipaddress/R/test-helpers.R |only ipaddress-0.5.0/ipaddress/R/traverse_hierarchy.R | 26 ipaddress-0.5.0/ipaddress/R/within_network.R | 20 ipaddress-0.5.0/ipaddress/README.md | 26 ipaddress-0.5.0/ipaddress/build/vignette.rds |binary ipaddress-0.5.0/ipaddress/data |only ipaddress-0.5.0/ipaddress/inst/doc/ipaddress-classes.Rmd | 4 ipaddress-0.5.0/ipaddress/inst/doc/ipaddress-classes.html | 10 ipaddress-0.5.0/ipaddress/inst/doc/ipaddress-examples.R | 26 ipaddress-0.5.0/ipaddress/inst/doc/ipaddress-examples.Rmd | 41 ipaddress-0.5.0/ipaddress/inst/doc/ipaddress-examples.html | 57 - ipaddress-0.5.0/ipaddress/inst/include |only ipaddress-0.5.0/ipaddress/man/collapse_networks.Rd |only ipaddress-0.5.0/ipaddress/man/exclude_networks.Rd |only ipaddress-0.5.0/ipaddress/man/iana_ipv4.Rd |only ipaddress-0.5.0/ipaddress/man/iana_ipv6.Rd |only ipaddress-0.5.0/ipaddress/man/ip_address.Rd | 26 ipaddress-0.5.0/ipaddress/man/ip_interface.Rd | 8 ipaddress-0.5.0/ipaddress/man/ip_network.Rd | 8 ipaddress-0.5.0/ipaddress/man/ip_operators.Rd |only ipaddress-0.5.0/ipaddress/man/ip_to_hostname.Rd | 7 ipaddress-0.5.0/ipaddress/man/ip_to_integer.Rd | 10 ipaddress-0.5.0/ipaddress/man/ipaddress-package.Rd | 2 ipaddress-0.5.0/ipaddress/man/ipaddress-vctrs.Rd | 2 ipaddress-0.5.0/ipaddress/man/is_reserved.Rd | 36 ipaddress-0.5.0/ipaddress/man/reverse_pointer.Rd |only ipaddress-0.5.0/ipaddress/man/sequence.Rd | 2 ipaddress-0.5.0/ipaddress/man/traverse_hierarchy.Rd | 2 ipaddress-0.5.0/ipaddress/src/Makevars | 1 ipaddress-0.5.0/ipaddress/src/Makevars.win | 2 ipaddress-0.5.0/ipaddress/src/RcppExports.cpp | 518 +++++----- ipaddress-0.5.0/ipaddress/src/basic.cpp |only ipaddress-0.5.0/ipaddress/src/collapse_exclude.cpp |only ipaddress-0.5.0/ipaddress/src/collapse_exclude.h |only ipaddress-0.5.0/ipaddress/src/iterative.h | 6 ipaddress-0.5.0/ipaddress/src/networks.cpp |only ipaddress-0.5.0/ipaddress/src/operators.cpp |only ipaddress-0.5.0/ipaddress/src/other_repr.cpp |only ipaddress-0.5.0/ipaddress/src/other_repr.h |only ipaddress-0.5.0/ipaddress/src/reserved.cpp |only ipaddress-0.5.0/ipaddress/src/sample.h | 6 ipaddress-0.5.0/ipaddress/tests/testthat/test-collapse_exclude.R |only ipaddress-0.5.0/ipaddress/tests/testthat/test-common_network.R | 15 ipaddress-0.5.0/ipaddress/tests/testthat/test-ip_address_v4.R | 5 ipaddress-0.5.0/ipaddress/tests/testthat/test-ip_address_v6.R | 4 ipaddress-0.5.0/ipaddress/tests/testthat/test-ip_interface.R | 41 ipaddress-0.5.0/ipaddress/tests/testthat/test-ip_network_v4.R | 41 ipaddress-0.5.0/ipaddress/tests/testthat/test-ip_network_v6.R | 25 ipaddress-0.5.0/ipaddress/tests/testthat/test-ip_version.R | 6 ipaddress-0.5.0/ipaddress/tests/testthat/test-ipv6_transition.R | 72 - ipaddress-0.5.0/ipaddress/tests/testthat/test-network_mask.R | 38 ipaddress-0.5.0/ipaddress/tests/testthat/test-network_size.R |only ipaddress-0.5.0/ipaddress/tests/testthat/test-operators.R |only ipaddress-0.5.0/ipaddress/tests/testthat/test-other_repr.R | 132 ++ ipaddress-0.5.0/ipaddress/tests/testthat/test-reserved.R | 173 +-- ipaddress-0.5.0/ipaddress/tests/testthat/test-sample.R | 23 ipaddress-0.5.0/ipaddress/tests/testthat/test-sequence.R | 10 ipaddress-0.5.0/ipaddress/tests/testthat/test-summarize_address_range.R | 15 ipaddress-0.5.0/ipaddress/tests/testthat/test-traverse_hierarchy.R | 44 ipaddress-0.5.0/ipaddress/tests/testthat/test-within_network.R | 28 ipaddress-0.5.0/ipaddress/vignettes/ipaddress-classes.Rmd | 4 ipaddress-0.5.0/ipaddress/vignettes/ipaddress-examples.Rmd | 41 96 files changed, 1528 insertions(+), 865 deletions(-)
Title: Nonparametric Robust Estimation and Inference Methods using
Local Polynomial Regression and Kernel Density Estimation
Description: Tools for data-driven statistical analysis using local polynomial regression and kernel density estimation methods as described in Calonico, Cattaneo and Farrell (2018, <doi:10.1080/01621459.2017.1285776>): lprobust() for local polynomial point estimation and robust bias-corrected inference, lpbwselect() for local polynomial bandwidth selection, kdrobust() for kernel density point estimation and robust bias-corrected inference, kdbwselect() for kernel density bandwidth selection, and nprobust.plot() for plotting results. The main methodological and numerical features of this package are described in Calonico, Cattaneo and Farrell (2019, <doi:10.18637/jss.v091.i08>).
Author: Sebastian Calonico <sebastian.calonico@columbia.edu>, Matias D. Cattaneo <cattaneo@princeton.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>
Maintainer: Sebastian Calonico <sebastian.calonico@columbia.edu>
Diff between nprobust versions 0.3.0 dated 2020-04-02 and 0.4.0 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- build/partial.rdb |binary man/kdbwselect.Rd | 12 ++++++------ man/kdrobust.Rd | 12 ++++++------ man/lpbwselect.Rd | 12 ++++++------ man/lprobust.Rd | 12 ++++++------ man/nprobust-package.Rd | 8 ++++---- man/nprobust.plot.Rd | 4 ++-- 9 files changed, 42 insertions(+), 42 deletions(-)
Title: Visible Vowels: Visualization of Vowel Variation
Description: Visualizes vowel variation in f0, F1, F2, F3 and duration.
Author: Wilbert Heeringa, Hans Van de Velde
Maintainer: Wilbert Heeringa <wjheeringa@gmail.com>
Diff between visvow versions 0.9.0 dated 2020-05-12 and 1.0.0 dated 2020-08-26
DESCRIPTION | 8 - MD5 | 8 - R/visvow.R | 348 ++++++++++++++++++++++++++++++++++++++++++----------- build/partial.rdb |binary build/vignette.rds |binary 5 files changed, 285 insertions(+), 79 deletions(-)
Title: Bayesian Analysis of Seemingly Unrelated Regression Models
Description: Implementation of the direct Monte Carlo approach of
Zellner and Ando (2010) <doi:10.1016/j.jeconom.2010.04.005>
to sample from posterior of
Seemingly Unrelated Regression (SUR) models. In
addition, a Gibbs sampler is implemented that allows
the user to analyze SUR models using the power prior.
Author: Ethan Alt
Maintainer: Ethan Alt <ethanalt@live.unc.edu>
Diff between surbayes versions 0.1.1 dated 2020-05-15 and 0.1.2 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++-- R/sur_sample_dmc.R | 10 ++++------ R/sur_sample_powerprior.R | 11 ++++------- src/Makevars | 1 - 6 files changed, 19 insertions(+), 25 deletions(-)
Title: Factorization of Sparse Counts Matrices Through Poisson
Likelihood
Description: Creates a low-rank factorization of a sparse counts matrix by maximizing Poisson likelihood with l1/l2 regularization
with all non-negative latent factors (e.g. for recommender systems or topic modeling) (Cortes, (2018) <arXiv:1811.01908>).
Similar to hierarchical Poisson factorization, but follows an optimization-based approach with regularization instead of a
hierarchical structure, and is fit through gradient-based methods instead of variational inference.
Author: David Cortes [aut, cre, cph], Jean-Sebastien Roy [cph], Stephen Nash [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between poismf versions 0.2.3 dated 2020-08-10 and 0.2.4 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/poismf.R | 2 +- man/poismf_unsafe.Rd | 2 +- src/Makevars | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Dynamical Assembly of Islands by Speciation, Immigration and
Extinction
Description: Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See e.g. Valente et al. 2015. Ecology Letters 18: 844-852, <DOI:10.1111/ele.12461>.
Author: Rampal S. Etienne [aut, cre] (<https://orcid.org/0000-0003-2142-7612>),
Luis Valente [aut] (<https://orcid.org/0000-0003-4247-8785>),
Albert B. Phillimore [aut] (<https://orcid.org/0000-0002-6553-1553>),
Bart Haegeman [aut] (<https://orcid.org/0000-0003-2325-4727>),
Joshua W. Lambert [aut],
Pedro Neves [aut] (<https://orcid.org/0000-0003-2561-4677>),
Shu Xie [aut],
Richèl J.C. Bilderbeek [aut] (<https://orcid.org/0000-0003-1107-7049>),
Torsten Hauffe [ctb] (<https://orcid.org/0000-0001-5711-9457>),
Giovanni Laudanno [ctb],
Nadiah Kristensen [ctb],
Raphael Scherrer [ctb]
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between DAISIE versions 3.0.0 dated 2020-08-14 and 3.0.1 dated 2020-08-26
DAISIE-3.0.0/DAISIE/man/create_relaxed_rate_pars.Rd |only DAISIE-3.0.1/DAISIE/DESCRIPTION | 12 - DAISIE-3.0.1/DAISIE/MD5 | 49 ++--- DAISIE-3.0.1/DAISIE/NAMESPACE | 1 DAISIE-3.0.1/DAISIE/R/DAISIE_sim_relaxed_rate.R | 17 -- DAISIE-3.0.1/DAISIE/R/DAISIE_utils.R | 85 ++++------ DAISIE-3.0.1/DAISIE/R/default_params_doc.R | 5 DAISIE-3.0.1/DAISIE/man/DAISIE-package.Rd | 2 DAISIE-3.0.1/DAISIE/man/DAISIE_ExpEIN.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_calc_sumstats_pcrates.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_plot_pc_rates.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim_constant_rate_shift.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim_core_constant_rate.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim_core_constant_rate_shift.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim_core_time_dependent.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim_core_trait_dependent.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim_min_type2.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim_relaxed_rate.Rd | 15 - DAISIE-3.0.1/DAISIE/man/DAISIE_sim_time_dependent.Rd | 5 DAISIE-3.0.1/DAISIE/man/DAISIE_sim_trait_dependent.Rd | 5 DAISIE-3.0.1/DAISIE/man/default_params_doc.Rd | 5 DAISIE-3.0.1/DAISIE/man/sample_relaxed_rate.Rd | 2 DAISIE-3.0.1/DAISIE/src/Makevars | 9 - DAISIE-3.0.1/DAISIE/tests/testthat/test-DAISIE_sim_relaxed_rate.R | 43 ----- DAISIE-3.0.1/DAISIE/tests/testthat/test-DAISIE_utils.R | 72 +++----- 26 files changed, 181 insertions(+), 196 deletions(-)
Title: Linkage Disequilibrium Corrected by the Structure and the
Relatedness
Description: Four measures of linkage disequilibrium are provided: the usual r^2
measure, the r^2_S measure (r^2 corrected by the structure
sample), the r^2_V (r^2 corrected by the relatedness of
genotyped individuals), the r^2_VS measure (r^2 corrected by
both the relatedness of genotyped individuals and the structure
of the sample).
Author: David Desrousseaux, Florian Sandron, Aurélie Siberchicot,
Christine Cierco-Ayrolles and Brigitte Mangin
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between LDcorSV versions 1.3.2 dated 2017-05-04 and 1.3.3 dated 2020-08-26
DESCRIPTION | 10 +-- MD5 | 33 ++++++------ R/LD.Measures.R | 90 +++++++++++++-------------------- R/Measure.R2.R | 8 +-- R/Measure.R2S.R | 8 +-- R/Measure.R2V.R | 10 +-- R/Measure.R2VS.R | 10 +-- README.md |only man/Info.Locus.Rd | 27 +++------- man/Inv.proj.matrix.sdp.Rd | 24 +++------ man/LD.Measures.Rd | 120 +++++++++++++++++++-------------------------- man/LDcorSV-package.Rd | 22 +------- man/Measure.R2.Rd | 33 ++++++------ man/Measure.R2S.Rd | 25 ++++----- man/Measure.R2V.Rd | 21 +++---- man/Measure.R2VS.Rd | 34 ++++++------ man/data.test.Rd | 30 ++++------- tests |only 18 files changed, 219 insertions(+), 286 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-20 0.1.6
Title: Automatically Retrieve Multidimensional Distributed Data Sets
Description: Tool to automatically fetch, transform and arrange subsets of multi-
dimensional data sets (collections of files) stored in local and/or remote
file systems or servers, using multicore capabilities where possible. The tool
provides an interface to perceive a collection of data sets as a single large
multidimensional data array, and enables the user to request for automatic
retrieval, processing and arrangement of subsets of the large array. Wrapper
functions to add support for custom file formats can be plugged in/out, making
the tool suitable for any research field where large multidimensional data
sets are involved.
Author: BSC-CNS [aut, cph],
Nicolau Manubens [aut],
An-Chi Ho [ctb, cre],
Nuria Perez-Zanon [ctb] (<https://orcid.org/0000-0001-8568-3071>),
Javier Vegas [ctb],
Pierre-Antoine Bretonniere [ctb],
Roberto Serrano [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between startR versions 2.0.0 dated 2020-08-16 and 2.0.1 dated 2020-08-26
DESCRIPTION | 6 MD5 | 10 NEWS.md | 14 R/Start.R | 8808 ++++++++++++++++---------------- inst/chunking/load_process_save_chunk.R | 4 man/Start.Rd | 19 6 files changed, 4502 insertions(+), 4359 deletions(-)
Title: Extensions for Synthetic Controls Analysis
Description: Extensions to the synthetic controls analyses
performed by the package 'Synth' as detailed in Abadie, Diamond, and Hainmueller (2011) <doi: 10.18637/jss.v042.i13>. Includes generating
and plotting placebos, post/pre-MSPE (Mean Squared Prediction Error) significance tests and plots,
and calculating average treatment effects for multiple treated units.
This package represents an implementation of those methods
suggested in
Abadie, Diamond,and Hainmueller (2010) <doi:10.1198/jasa.2009.ap08746> for
use in Synthetic Control Analysis.
Author: Bruno Castanho Silva [aut, cre]
(<https://orcid.org/0000-0001-9363-4704>),
Michael DeWitt [aut] (<https://orcid.org/0000-0001-8940-1967>)
Maintainer: Bruno Castanho Silva <bcsilva@wiso.uni-koeln.de>
Diff between SCtools versions 0.3.0 dated 2019-12-12 and 0.3.1 dated 2020-08-26
DESCRIPTION | 26 MD5 | 94 +- NAMESPACE | 35 NEWS.md | 11 R/SCtools-internal.R | 304 +++--- R/SCtools.R | 32 R/dataset.R | 86 - R/generate.placebos.R | 378 ++++---- R/mspe.plot.R | 376 ++++---- R/mspe.test.R | 305 +++--- R/multiple.synth.R | 479 +++++----- R/plac.dist.R | 274 +++--- R/plot.placebos.R | 327 ++++--- R/tdf.R | 48 - README.md | 92 +- build/vignette.rds |binary data/alcohol.rda |binary inst/doc/case-study.R | 270 +++--- inst/doc/case-study.Rmd | 440 +++++----- inst/doc/case-study.html | 1403 +++++++++++++++----------------- inst/doc/replicating-basque.R | 132 +-- inst/doc/replicating-basque.Rmd | 218 ++-- inst/doc/replicating-basque.html | 755 ++++++++--------- inst/paper.bib | 382 ++++---- inst/paper.html | 616 +++++++------- inst/paper.md | 150 +-- man/SCtools-package.Rd | 76 - man/alcohol.Rd | 74 - man/generate.placebos.Rd | 210 ++-- man/is_tdf.Rd | 38 man/is_tdf_multi.Rd | 38 man/mspe.plot.Rd | 281 +++--- man/mspe.test.Rd | 235 +++-- man/multiple.synth.Rd | 284 +++--- man/plac.dist.Rd | 156 +-- man/plot_placebos.Rd | 207 ++-- man/synth.data.Rd | 52 - tests/testthat.R | 8 tests/testthat/test-generate.R | 150 +-- tests/testthat/test-mspe.R | 86 - tests/testthat/test-multiple.R | 56 - tests/testthat/test-pSCtools-internal.R | 6 tests/testthat/test-plac.R | 58 - tests/testthat/test-plot-placebos.R | 84 - tests/testthat/test-plot.R | 178 ++-- vignettes/case-study.Rmd | 440 +++++----- vignettes/replicating-basque.Rmd | 218 ++-- vignettes/russia.bib | 32 48 files changed, 5268 insertions(+), 4932 deletions(-)
Title: Simple Peak Alignment for Gas-Chromatography Data
Description: Aligns peak based on peak retention times and matches homologous peaks
across samples. The underlying alignment procedure comprises three sequential steps.
(1) Full alignment of samples by linear transformation of retention times to
maximise similarity among homologous peaks (2) Partial alignment of peaks within
a user-defined retention time window to cluster homologous peaks (3) Merging rows
that are likely representing homologous substances (i.e. no sample shows peaks in
both rows and the rows have similar retention time means). The algorithm is described in detail
in Ottensmann et al., 2018 <doi:10.1371/journal.pone.0198311>.
Author: Meinolf Ottensmann [aut, cre] (<https://orcid.org/0000-0003-3112-6928>),
Martin Stoffel [aut],
Hazel J. Nichols [aut],
Joseph I. Hoffman [aut]
Maintainer: Meinolf Ottensmann <meinolf.ottensmann@web.de>
Diff between GCalignR versions 1.0.2 dated 2018-07-16 and 1.0.3 dated 2020-08-26
DESCRIPTION | 22 LICENSE |only MD5 | 74 +- NEWS.md | 113 +++- R/align_chromatograms.R | 490 +++++++++-------- R/align_peaks.R | 10 R/check_input.R | 62 +- R/choose_optimal_reference.R | 2 R/formatting_filtering_gc_data.R | 11 R/linear_transformation.R | 2 R/peak_interspace.R | 18 R/plot.GCalign.R | 2 R/read_peak_list.R | 13 README.md | 95 +-- build/vignette.rds |binary inst/doc/GCalignR_How_does_the_Algorithm_work.R | 18 inst/doc/GCalignR_How_does_the_Algorithm_work.Rmd | 4 inst/doc/GCalignR_How_does_the_Algorithm_work.html | 453 ++++++++++++---- inst/doc/GCalignR_step_by_step.R | 28 inst/doc/GCalignR_step_by_step.html | 591 ++++++++++++++------- man/GCalignR.Rd | 1 man/align_chromatograms.Rd | 32 - man/align_peaks.Rd | 16 man/aligned_peak_data.Rd | 6 man/as.data.frame.GCalign.Rd | 4 man/draw_chromatogram.Rd | 19 man/gc_heatmap.Rd | 18 man/linear_transformation.Rd | 10 man/norm_peaks.Rd | 8 man/peak_data.Rd | 6 man/peak_factors.Rd | 4 man/peak_interspace.Rd | 10 man/plot.GCalign.Rd | 9 man/read_empower2.Rd | 9 man/read_peak_list.Rd | 4 man/simple_chroma.Rd | 10 vignettes/GCalignRLogo.png |only vignettes/GCalignR_How_does_the_Algorithm_work.Rmd | 4 vignettes/bibliography.bib | 16 39 files changed, 1472 insertions(+), 722 deletions(-)
Title: Tools to Retrieve Economic Policy Institute Data Library
Extracts
Description: The Economic Policy Institute (<https://www.epi.org/>) provides
researchers, media, and the public with easily accessible, up-to-date, and
comprehensive historical data on the American labor force. It is compiled
from Economic Policy Institute analysis of government data sources. Use
it to research wages, inequality, and other economic indicators over time
and among demographic groups. Data is usually updated monthly.
Author: Bob Rudis [aut, cre]
Maintainer: Bob Rudis <bob@rud.is>
Diff between epidata versions 0.3.0 dated 2019-04-11 and 0.4.0 dated 2020-08-26
epidata-0.3.0/epidata/man/get_wage_ratios.Rd |only epidata-0.3.0/epidata/tests/test-all.R |only epidata-0.3.0/epidata/tests/testthat |only epidata-0.4.0/epidata/DESCRIPTION | 19 epidata-0.4.0/epidata/MD5 | 84 ++-- epidata-0.4.0/epidata/NAMESPACE | 4 epidata-0.4.0/epidata/NEWS.md | 6 epidata-0.4.0/epidata/R/aaa.r | 26 + epidata-0.4.0/epidata/R/annual-wages-by-wage-group.R | 7 epidata-0.4.0/epidata/R/compensation-wages-benefits.R | 7 epidata-0.4.0/epidata/R/employment.r | 33 - epidata-0.4.0/epidata/R/epi_query.r | 10 epidata-0.4.0/epidata/R/epidata-package.R | 6 epidata-0.4.0/epidata/R/gaps.r | 92 +--- epidata-0.4.0/epidata/R/health.r | 11 epidata-0.4.0/epidata/R/minimum-wage.R | 7 epidata-0.4.0/epidata/R/pension.r | 11 epidata-0.4.0/epidata/R/poverty.R | 14 epidata-0.4.0/epidata/R/productivity.r | 9 epidata-0.4.0/epidata/R/union.r | 7 epidata-0.4.0/epidata/R/wage_decomposition.r | 5 epidata-0.4.0/epidata/R/wages.r | 19 epidata-0.4.0/epidata/R/wages_and_hours.r | 5 epidata-0.4.0/epidata/README.md | 204 ++++++---- epidata-0.4.0/epidata/inst |only epidata-0.4.0/epidata/man/epidata.Rd | 5 epidata-0.4.0/epidata/man/figures/README-ex02-1.png |only epidata-0.4.0/epidata/man/figures/README-unnamed-chunk-1-1.png |only epidata-0.4.0/epidata/man/get_annual_wages_and_work_hours.Rd | 2 epidata-0.4.0/epidata/man/get_annual_wages_by_wage_group.Rd | 4 epidata-0.4.0/epidata/man/get_black_white_wage_gap.Rd | 4 epidata-0.4.0/epidata/man/get_college_wage_premium.Rd | 4 epidata-0.4.0/epidata/man/get_compensation_wages_and_benefits.Rd | 4 epidata-0.4.0/epidata/man/get_employment_to_population_ratio.Rd | 8 epidata-0.4.0/epidata/man/get_gender_wage_gap.Rd | 3 epidata-0.4.0/epidata/man/get_health_insurance_coverage.Rd | 8 epidata-0.4.0/epidata/man/get_hispanic_white_wage_gap.Rd | 4 epidata-0.4.0/epidata/man/get_minimum_wage.Rd | 4 epidata-0.4.0/epidata/man/get_non_high_school_wage_penalty.Rd | 4 epidata-0.4.0/epidata/man/get_pension_coverage.Rd | 8 epidata-0.4.0/epidata/man/get_poverty_level_wages.Rd | 10 epidata-0.4.0/epidata/man/get_productivity_and_hourly_compensation.Rd | 6 epidata-0.4.0/epidata/man/get_union_coverage.Rd | 4 epidata-0.4.0/epidata/man/get_wage_decomposition.Rd | 2 epidata-0.4.0/epidata/man/get_wages_by_percentile.Rd | 2 epidata-0.4.0/epidata/man/not_dos.Rd |only epidata-0.4.0/epidata/tests/tinytest.R |only 47 files changed, 383 insertions(+), 289 deletions(-)
Title: Row by Row Data Processing Tool, Using 'Sailr' Script
Description: A row by row data processing tool. You can write data processing code in 'Sailr' scripting language which is specially intended for data manipulation. The package uses 'libsailr' (C/C++ library) for its 'Sailr' code parsing and its execution.
Author: Toshihiro Umehara [aut, cre],
Troy Hanson [cph, ctb] (uthash),
Howard Hinnant [cph, ctb] (date.h),
Adrian Colomitchi [cph, ctb] (date.h),
Florian Dang [cph, ctb] (date.h),
Paul Thompson [cph, ctb] (date.h),
Tomasz Kamiński [cph, ctb] (date.h),
Nemanja Trifunovic [cph, ctb] (utfcpp),
Kim Grasman [cph, ctb] (getopt_port),
Jon Clayden [cph, ctb] (ore package),
K.Kosako [cph, ctb] (onigmo author),
K.Takata [cph, ctb] (onigmo author),
Byte [cph, ctb] (onigmo contributor),
KUBO Takehiro [cph, ctb] (onigmo contributor),
Free Software Foundation, Inc [cph],
X Consortium [cph]
Maintainer: Toshihiro Umehara <toshi@niceume.com>
Diff between datasailr versions 0.8.5 dated 2020-07-06 and 0.8.6 dated 2020-08-26
datasailr-0.8.5/datasailr/src/libsailr/dev_env |only datasailr-0.8.6/datasailr/DESCRIPTION | 14 datasailr-0.8.6/datasailr/MD5 | 134 +-- datasailr-0.8.6/datasailr/NEWS.md | 14 datasailr-0.8.6/datasailr/R/data_sailr_main.R | 25 datasailr-0.8.6/datasailr/README.md | 151 ++- datasailr-0.8.6/datasailr/configure | 18 datasailr-0.8.6/datasailr/configure.ac | 2 datasailr-0.8.6/datasailr/inst/unit_tests/test_push_row.R |only datasailr-0.8.6/datasailr/src/Makevars.in | 11 datasailr-0.8.6/datasailr/src/Makevars.win | 10 datasailr-0.8.6/datasailr/src/data_sailr_cpp_main.cpp | 439 +++++++++- datasailr-0.8.6/datasailr/src/datasailr_ext_func.cpp |only datasailr-0.8.6/datasailr/src/datasailr_ext_func.hpp |only datasailr-0.8.6/datasailr/src/libsailr/HISTORY.md | 17 datasailr-0.8.6/datasailr/src/libsailr/Makefile | 14 datasailr-0.8.6/datasailr/src/libsailr/gen_code.c | 2 datasailr-0.8.6/datasailr/src/libsailr/gen_code.h | 4 datasailr-0.8.6/datasailr/src/libsailr/gen_code_util.c | 2 datasailr-0.8.6/datasailr/src/libsailr/gen_code_util.h | 2 datasailr-0.8.6/datasailr/src/libsailr/lex.l | 6 datasailr-0.8.6/datasailr/src/libsailr/lex.yy.c | 4 datasailr-0.8.6/datasailr/src/libsailr/node.h | 2 datasailr-0.8.6/datasailr/src/libsailr/parse.y | 2 datasailr-0.8.6/datasailr/src/libsailr/ptr_table.c | 10 datasailr-0.8.6/datasailr/src/libsailr/ptr_table.h | 2 datasailr-0.8.6/datasailr/src/libsailr/sailr.c | 26 datasailr-0.8.6/datasailr/src/libsailr/sailr.h | 5 datasailr-0.8.6/datasailr/src/libsailr/sailr_ext.c |only datasailr-0.8.6/datasailr/src/libsailr/sailr_ext.h |only datasailr-0.8.6/datasailr/src/libsailr/simple_date/cpp_date.hpp | 2 datasailr-0.8.6/datasailr/src/libsailr/string/cpp_string/cpp_string.hpp | 2 datasailr-0.8.6/datasailr/src/libsailr/vm/func/c_func/c_func.c | 4 datasailr-0.8.6/datasailr/src/libsailr/vm/func/c_func/c_func.h | 2 datasailr-0.8.6/datasailr/src/libsailr/vm/func/c_func/c_func_helper.c |only datasailr-0.8.6/datasailr/src/libsailr/vm/func/c_func/c_func_helper.h | 303 ------ datasailr-0.8.6/datasailr/src/libsailr/vm/func/ext_func |only datasailr-0.8.6/datasailr/src/libsailr/vm/vm.c | 26 datasailr-0.8.6/datasailr/src/libsailr/vm/vm.h | 5 datasailr-0.8.6/datasailr/src/libsailr/vm/vm_assign.c | 32 datasailr-0.8.6/datasailr/src/libsailr/vm/vm_calc.c | 2 datasailr-0.8.6/datasailr/src/libsailr/vm/vm_item_pp2val.c | 4 datasailr-0.8.6/datasailr/src/libsailr/vm/vm_rexp.c | 4 datasailr-0.8.6/datasailr/src/libsailr/vm/vm_stack.c | 17 datasailr-0.8.6/datasailr/src/libsailr/vm/vm_stack.h | 5 datasailr-0.8.6/datasailr/src/libsailr/y.tab.c | 2 46 files changed, 792 insertions(+), 534 deletions(-)
Title: Subtests Using Algorithmic Rummaging Techniques
Description: Construct subtests from a pool of items by using ant-colony-optimization, genetic algorithms, brute force, or random sampling.
Schultze (2017) <doi:10.17169/refubium-622>.
Author: Martin Schultze [aut, cre],
Johanna Schüller [ctb]
Maintainer: Martin Schultze <schultze@psych.uni-frankfurt.de>
Diff between stuart versions 0.9.0 dated 2020-05-11 and 0.9.1 dated 2020-08-26
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/bf.cycle.R | 2 +- R/holdout.R | 8 ++++---- R/invariance.implementation.R | 6 +++--- R/run.lavaan.R | 4 ++-- 6 files changed, 20 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-12 0.3.0
2016-02-01 0.2.0
2015-09-12 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-24 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-02 0.3.0
2018-04-01 0.2.2
2017-09-23 0.2.0
2017-06-08 0.1.1
2017-01-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-31 0.1.1
2018-10-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-18 2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-04 0.8.2
2018-09-10 0.8.1
2018-08-25 0.8.0
2017-11-03 0.7.5
2017-09-25 0.7.4
2017-08-07 0.7.3
2017-07-18 0.7.2
2017-06-24 0.7.1
2017-05-29 0.7.0
2015-11-20 0.6.3
2015-10-11 0.6.1
2015-10-11 0.6.2
2015-09-16 0.6.0
2015-09-08 0.5.9
2015-08-29 0.5.8
2015-07-28 0.5.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-05 0.3.0
2020-05-17 0.2.5
2020-02-02 0.2.4
2019-10-21 0.2.3
2019-10-15 0.2.2
2019-08-21 0.2.1
2019-08-08 0.2.0
2019-05-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-04 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-24 1.1.1
2019-08-05 1.1.0
2019-01-30 1.0.0
Title: Robust Generalized Linear Models (GLM) using Mixtures
Description: Robust generalized linear models (GLM) using a mixture method, as described in Beath (2018) <doi:10.1080/02664763.2017.1414164>. This assumes that the data are a mixture of standard observations, being a generalised linear model, and outlier observations from an overdispersed generalized linear model. The overdispersed linear model is obtained by including a normally distributed random effect in the linear predictor of the generalized linear model.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken.beath@mq.edu.au>
Diff between robmixglm versions 1.1-1 dated 2020-08-13 and 1.2-0 dated 2020-08-26
DESCRIPTION | 8 - MD5 | 29 ++--- NAMESPACE | 2 R/binomial.fit.robmixglm.R | 17 +-- R/gamma.fit.robmixglm.R | 13 +- R/gaussian.fit.robmixglm.R | 21 ++- R/myoptim.R | 17 +-- R/nbinom.fit.robmixglm.R | 22 ++-- R/outlierTest.robmixglm.R | 8 - R/poisson.fit.robmixglm.R | 15 +- R/robmixglm.R | 9 - R/truncpoisson.fit.robmixglm.R | 225 ++++++++++++++++++++--------------------- inst/NEWS | 10 + man/robmixglm-package.Rd | 11 ++ man/robmixglm.Rd | 7 - vignettes/Untitled.Rmd |only 16 files changed, 224 insertions(+), 190 deletions(-)
Title: Derive Polygenic Risk Score Based on Emprical Bayes Theory
Description: EB-PRS is a novel method that leverages information for effect sizes across all the markers to improve the prediction accuracy. No parameter tuning is needed in the method, and no external information is needed. This R-package provides the calculation of polygenic risk scores from the given training summary statistics and testing data. We can use EB-PRS to extract main information, estimate Empirical Bayes parameters, derive polygenic risk scores for each individual in testing data, and evaluate the PRS according to AUC and predictive r2. See Song et al. (2020) <doi:10.1371/journal.pcbi.1007565> for a detailed presentation of the method.
Author: Shuang Song [aut, cre], Wei Jiang [aut], Lin Hou [aut] and Hongyu Zhao [aut]
Maintainer: Shuang Song <song-s19@mails.tsinghua.edu.cn>
Diff between EBPRS versions 2.0.4 dated 2020-07-10 and 2.1.0 dated 2020-08-26
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ NAMESPACE | 3 +++ R/findPara.R | 11 ++++------- R/packageEBPRS.R | 32 +++++++++++++++----------------- R/read_plink.R |only man/EBPRS.Rd | 12 ++++-------- man/EBPRSpackage.Rd | 33 +++++++++++++++------------------ man/read_plink.Rd |only 9 files changed, 53 insertions(+), 60 deletions(-)
Title: Stepwise Elimination and Term Reordering for Mixed-Effects
Regression
Description: Finds the largest possible regression model that will still converge
for various types of regression analyses (including mixed models and generalized
additive models) and then optionally performs stepwise elimination similar to the
forward and backward effect-selection methods in SAS, based on the change in
log-likelihood or its significance, Akaike's Information Criterion, the Bayesian
Information Criterion, the explained deviance, or the F-test of the change in R².
Author: Cesko C. Voeten [aut, cre] (<https://orcid.org/0000-0003-4687-9973>)
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between buildmer versions 1.6 dated 2020-05-27 and 1.7.1 dated 2020-08-26
buildmer-1.6/buildmer/R/documentation.R |only buildmer-1.6/buildmer/man/buildjulia.Rd |only buildmer-1.7.1/buildmer/ChangeLog | 42 buildmer-1.7.1/buildmer/DESCRIPTION | 14 buildmer-1.7.1/buildmer/MD5 | 73 - buildmer-1.7.1/buildmer/NAMESPACE | 52 buildmer-1.7.1/buildmer/R/buildmer-S4.R | 82 - buildmer-1.7.1/buildmer/R/buildmer-private.R | 74 - buildmer-1.7.1/buildmer/R/buildmer.R | 541 ++------ buildmer-1.7.1/buildmer/R/control.R |only buildmer-1.7.1/buildmer/R/deprecated.R | 82 - buildmer-1.7.1/buildmer/R/directions.R | 63 - buildmer-1.7.1/buildmer/R/elim.R | 66 - buildmer-1.7.1/buildmer/R/fitters.R | 115 - buildmer-1.7.1/buildmer/R/package.R |only buildmer-1.7.1/buildmer/R/patchers.R | 137 +- buildmer-1.7.1/buildmer/R/utility.R | 108 + buildmer-1.7.1/buildmer/build/vignette.rds |binary buildmer-1.7.1/buildmer/inst/doc/buildmer.R | 326 +++-- buildmer-1.7.1/buildmer/inst/doc/buildmer.Rmd | 245 ++- buildmer-1.7.1/buildmer/inst/doc/buildmer.html | 1429 ++++++++++++----------- buildmer-1.7.1/buildmer/man/buildGLMMadaptive.Rd | 18 buildmer-1.7.1/buildmer/man/buildbam.Rd | 23 buildmer-1.7.1/buildmer/man/buildclmm.Rd | 23 buildmer-1.7.1/buildmer/man/buildcustom.Rd | 22 buildmer-1.7.1/buildmer/man/buildgam.Rd | 23 buildmer-1.7.1/buildmer/man/buildgamm.Rd | 21 buildmer-1.7.1/buildmer/man/buildgamm4.Rd | 24 buildmer-1.7.1/buildmer/man/buildglmmTMB.Rd | 23 buildmer-1.7.1/buildmer/man/buildgls.Rd | 26 buildmer-1.7.1/buildmer/man/buildlme.Rd | 26 buildmer-1.7.1/buildmer/man/buildmer-package.Rd | 40 buildmer-1.7.1/buildmer/man/buildmer.Rd | 35 buildmer-1.7.1/buildmer/man/buildmerControl.Rd |only buildmer-1.7.1/buildmer/man/buildmertree.Rd | 26 buildmer-1.7.1/buildmer/man/buildmultinom.Rd | 23 buildmer-1.7.1/buildmer/man/converged.Rd | 6 buildmer-1.7.1/buildmer/man/migrant.Rd | 2 buildmer-1.7.1/buildmer/man/vowels.Rd | 2 buildmer-1.7.1/buildmer/vignettes/buildmer.Rmd | 245 ++- 40 files changed, 2022 insertions(+), 2035 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-02-27 1.09
2011-04-08 1.08
2010-01-04 1.07
2009-04-14 1.06
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2020-08-06 0.0.1
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2019-09-25 0.2.9
2019-09-09 0.2.8
2019-07-18 0.2.7
2019-06-07 0.2.6
2019-05-19 0.2.4
2019-05-14 0.2.3
2019-04-08 0.2.2
2019-03-07 0.2.1
2018-11-12 0.2.0
2018-08-31 0.1.9
2018-07-05 0.1.8
2018-05-25 0.1.7
2018-05-14 0.1.6
2018-02-05 0.1.5
2018-02-02 0.1.4
2017-10-05 0.1.3
2017-09-27 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-09 0.1-21
2018-05-15 0.1-17
2016-08-03 0.1-16
2016-07-11 0.1-15
2016-01-28 0.1-14
2015-09-08 0.1-13
2015-08-06 0.1-12
2014-06-28 0.1-11
2014-05-08 0.1-10
2013-12-06 0.1-9
2013-07-18 0.1-8
2013-04-08 0.1-7
2012-07-26 0.1-6
2011-10-20 0.1-5
2011-07-23 0.1-4
2011-05-15 0.1-3
2010-12-17 0.1-2
2010-11-12 0.1-1
2010-08-18 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-23 0.7.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-12 1.2.0
2019-08-02 1.0.3
2018-10-28 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-08 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-03 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-24 2020.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-08 0.1.0