Title: Quantile G-Computation
Description: G-computation for a set of time-fixed exposures
with quantile-based basis functions, possibly under linearity and
homogeneity assumptions. This approach estimates a regression line
corresponding to the expected change in the outcome (on the link
basis) given a simultaneous increase in the quantile-based category
for all exposures. Works with continuous, binary, and right-censored
time-to-event outcomes. Reference: Alexander P. Keil, Jessie P.
Buckley, Katie M. OBrien, Kelly K. Ferguson, Shanshan Zhao, and
Alexandra J. White (2019) A quantile-based g-computation approach to
addressing the effects of exposure mixtures; <doi:10.1289/EHP5838>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <akeil@unc.edu>
Diff between qgcomp versions 2.4.0 dated 2020-07-01 and 2.5.0 dated 2020-09-09
DESCRIPTION | 13 - MD5 | 29 ++-- NAMESPACE | 3 NEWS.md | 9 + R/base.R | 15 +- R/base_experimental.R | 226 ------------------------------- R/base_samplesplits.R | 302 +++++++++++++++++++++++++++++++++++++++++- R/base_zi.R | 2 build/vignette.rds |binary inst/doc/qgcomp-vignette.R | 39 +++++ inst/doc/qgcomp-vignette.Rmd | 56 +++++++ inst/doc/qgcomp-vignette.html | 160 +++++++++++++++++++++- man/predict.qgcompfit.Rd | 6 man/qgcomp.partials.Rd | 2 man/split_data.Rd |only vignettes/qgcomp-vignette.Rmd | 56 +++++++ 16 files changed, 651 insertions(+), 267 deletions(-)
Title: Methods for Calculating Gradient Surface Metrics
Description: Methods for calculating gradient surface metrics for
continuous analysis of landscape features.
Author: Annie C. Smith, Phoebe Zarnetske, Kyla Dahlin, Adam Wilson, Andrew Latimer
Maintainer: Annie C. Smith <annie.smith@dnr.wa.gov>
Diff between geodiv versions 0.1.1 dated 2020-02-13 and 0.2.0 dated 2020-09-09
DESCRIPTION | 12 LICENSE | 4 MD5 | 82 +-- NAMESPACE | 132 +++--- NEWS.md | 41 + R/RcppExports.R | 58 +- R/aacf.R | 686 ++++++++++++++++---------------- R/basics.R | 486 +++++++++++----------- R/bearingarea.R | 854 +++++++++++++++++++++------------------- R/bestfit.R | 226 +++++----- R/data.R | 138 +++--- R/fftshift.R | 136 +++--- R/fourier.R | 671 ++++++++++++++++--------------- R/geodiv-package.R | 22 - R/localsurface.R | 616 ++++++++++++++--------------- R/movingwindow.R | 911 +++++++++++++++++++++---------------------- R/sdq.R | 192 ++++----- R/sfd.R | 84 +-- R/simpsons.R | 252 +++++------ R/surfacearea.R | 396 +++++++++--------- R/utilities.R | 322 +++++++-------- R/zshift.R | 286 ++++++------- README.md | 96 ++-- data/datalist | 6 data/normforest.rda |binary data/orelevation.rda |binary data/orforest.rda |binary man/dot-deg2rad.Rd | 34 - man/dot-rad2deg.Rd | 34 - man/fftshift.Rd | 90 ++-- man/normforest.Rd | 72 +-- man/orelevation.Rd | 58 +- man/orforest.Rd | 64 +-- man/s10z.Rd | 50 +- man/sdq.Rd | 64 +-- man/sdq6.Rd | 64 +-- man/sds.Rd | 50 +- man/sfd.Rd | 70 +-- man/sfd_.Rd | 70 +-- man/slopemeans.Rd | 80 +-- tests/testthat.R | 10 tests/testthat/test_inputs.R | 300 +++++++------- 42 files changed, 3956 insertions(+), 3863 deletions(-)
Title: Epidemiological Tool for Contact Tracing
Description: Routines for epidemiological contact tracing
and visualisation of network of contacts.
Author: Maria Noremark [aut] (<https://orcid.org/0000-0003-2555-8476>),
Stefan Widgren [aut, cre] (<https://orcid.org/0000-0001-5745-2284>)
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between EpiContactTrace versions 0.13.0 dated 2020-03-15 and 0.14.0 dated 2020-09-09
EpiContactTrace-0.13.0/EpiContactTrace/NEWS |only EpiContactTrace-0.13.0/EpiContactTrace/R/ContactTrace.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/Contacts.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/EpiContactTrace-package.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/in-degree.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/ingoing-contact-chain.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/network-structure.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/network-summary.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/out-degree.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/outgoing-contact-chain.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/plot.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/report.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/shortest-paths.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/show.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/trace.r |only EpiContactTrace-0.13.0/EpiContactTrace/R/tree.r |only EpiContactTrace-0.13.0/EpiContactTrace/inst/Sweave/speak-html.rnw |only EpiContactTrace-0.13.0/EpiContactTrace/inst/Sweave/speak-latex.rnw |only EpiContactTrace-0.14.0/EpiContactTrace/DESCRIPTION | 28 +- EpiContactTrace-0.14.0/EpiContactTrace/MD5 | 79 +++---- EpiContactTrace-0.14.0/EpiContactTrace/NAMESPACE | 1 EpiContactTrace-0.14.0/EpiContactTrace/NEWS.md |only EpiContactTrace-0.14.0/EpiContactTrace/R/ContactTrace.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/Contacts.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/EpiContactTrace-package.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/in-degree.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/ingoing-contact-chain.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/network-structure.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/network-summary.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/out-degree.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/outgoing-contact-chain.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/plot.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/report.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/shortest-paths.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/show.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/trace.R |only EpiContactTrace-0.14.0/EpiContactTrace/R/tree.R |only EpiContactTrace-0.14.0/EpiContactTrace/inst/CITATION | 4 EpiContactTrace-0.14.0/EpiContactTrace/inst/Sweave/speak-latex.Rnw |only EpiContactTrace-0.14.0/EpiContactTrace/man/ContactTrace-class.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/Contacts-class.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/EpiContactTrace-package.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/InDegree-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/IngoingContactChain-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/NetworkStructure-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/NetworkSummary-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/OutDegree-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/OutgoingContactChain-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/Report-methods.Rd | 99 ++++------ EpiContactTrace-0.14.0/EpiContactTrace/man/ReportObject.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/ShortestPaths-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/Trace.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/build_tree.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/is_wholenumber.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/plot-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/position_tree.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/show-methods.Rd | 2 EpiContactTrace-0.14.0/EpiContactTrace/man/transfers.Rd | 8 58 files changed, 125 insertions(+), 128 deletions(-)
More information about EpiContactTrace at CRAN
Permanent link
Title: Radiation Safety
Description: Provides functions for radiation safety, also known as
"radiation protection" and "radiological control". The science of
radiation protection is called "health physics" and its engineering
functions are called "radiological engineering". Functions in this
package cover many of the computations needed by radiation safety
professionals. Examples include: obtaining updated calibration and
source check values for radiation monitors to account for radioactive
decay in a reference source, simulating instrument readings to better
understand measurement uncertainty, correcting instrument readings
for geometry and ambient atmospheric conditions. Many of these
functions are described in Johnson and Kirby (2011, ISBN-13:
978-1609134198). Utilities are also included for developing inputs
and processing outputs with radiation transport codes, such as MCNP,
a general-purpose Monte Carlo N-Particle code that can be used for
neutron, photon, electron, or coupled neutron/photon/electron transport
(Werner et. al. (2018) <doi:10.2172/1419730>).
Author: Mark Hogue <mark.hogue.chp@gmail.com>
Maintainer: Mark Hogue <mark.hogue.chp@gmail.com>
Diff between radsafer versions 2.2.2 dated 2020-07-24 and 2.2.3 dated 2020-09-09
radsafer-2.2.2/radsafer/R/mcnp_scan2spec.R |only radsafer-2.2.2/radsafer/man/mcnp_scan2spec.Rd |only radsafer-2.2.3/radsafer/DESCRIPTION | 26 +++ radsafer-2.2.3/radsafer/MD5 | 42 ++---- radsafer-2.2.3/radsafer/NAMESPACE | 1 radsafer-2.2.3/radsafer/R/RN_info.R | 26 +-- radsafer-2.2.3/radsafer/R/RN_plot_spectrum.R | 2 radsafer-2.2.3/radsafer/R/RN_save_spectrum.R | 2 radsafer-2.2.3/radsafer/R/mcnp_matrix_rotations.R | 2 radsafer-2.2.3/radsafer/R/mcnp_plot_out_spec.R | 7 - radsafer-2.2.3/radsafer/R/mcnp_scan_save.R | 69 +++++----- radsafer-2.2.3/radsafer/R/mcnp_si_sp_RD.R | 2 radsafer-2.2.3/radsafer/inst/doc/Introduction_to_radsafer.html | 20 +- radsafer-2.2.3/radsafer/man/RN_info.Rd | 2 radsafer-2.2.3/radsafer/man/mcnp_cone_angle.Rd | 1 radsafer-2.2.3/radsafer/man/mcnp_est_nps.Rd | 1 radsafer-2.2.3/radsafer/man/mcnp_matrix_rotations.Rd | 1 radsafer-2.2.3/radsafer/man/mcnp_plot_out_spec.Rd | 8 - radsafer-2.2.3/radsafer/man/mcnp_scan2plot.Rd | 1 radsafer-2.2.3/radsafer/man/mcnp_scan_save.Rd | 7 - radsafer-2.2.3/radsafer/man/mcnp_si_sp_RD.Rd | 1 radsafer-2.2.3/radsafer/man/mcnp_si_sp_hist.Rd | 1 radsafer-2.2.3/radsafer/man/mcnp_si_sp_hist_scan.Rd | 1 23 files changed, 119 insertions(+), 104 deletions(-)
Title: Partitioning Beta Diversity into Turnover and Nestedness
Components
Description: Functions to compute pair-wise dissimilarities (distance matrices) and multiple-site dissimilarities, separating the turnover and nestedness-resultant components of taxonomic (incidence and abundance based), functional and phylogenetic beta diversity.
Author: Andres Baselga [aut, cre],
David Orme [aut],
Sebastien Villeger [aut],
Julien De Bortoli [aut],
Fabien Leprieur [aut],
Maxime Logez [aut],
Renato Henriques-Silva [ctb]
Maintainer: Andres Baselga <andres.baselga@usc.es>
Diff between betapart versions 1.5.1 dated 2018-10-18 and 1.5.2 dated 2020-09-09
DESCRIPTION | 19 - MD5 | 31 +- NAMESPACE | 4 NEWS.md | 10 R/functional.betapart.core.R | 523 +++++++++++++++++++++------------------- man/beta.para.control.Rd |only man/betapart.core.Rd | 2 man/betapart.core.abund.Rd | 2 man/boot.coefs.decay.Rd | 8 man/bray.part.Rd | 4 man/decay.model.Rd | 8 man/functional.beta.multi.Rd | 2 man/functional.beta.pair.Rd | 2 man/functional.betapart.core.Rd | 423 +++++++++++++++++--------------- man/phylo.beta.multi.rd | 2 man/phylo.beta.pair.rd | 2 man/phylo.betapart.core.rd | 2 17 files changed, 569 insertions(+), 475 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.12-0 dated 2020-01-19 and 0.12.1 dated 2020-09-09
xts-0.12-0/xts/inst/benchmarks/benchmark.binsearch.R |only xts-0.12-0/xts/inst/benchmarks/benchmark.eval.dots.R |only xts-0.12.1/xts/DESCRIPTION | 6 - xts-0.12.1/xts/MD5 | 75 +++++++-------- xts-0.12.1/xts/NEWS | 31 ++++++ xts-0.12.1/xts/R/Ops.xts.R | 30 ++++-- xts-0.12.1/xts/R/endpoints.R | 3 xts-0.12.1/xts/R/first.R | 6 - xts-0.12.1/xts/R/last.R | 2 xts-0.12.1/xts/R/merge.R | 2 xts-0.12.1/xts/R/plot.R | 7 + xts-0.12.1/xts/R/tclass.R | 17 +++ xts-0.12.1/xts/R/tzone.R | 17 +++ xts-0.12.1/xts/R/xts.R | 20 +++- xts-0.12.1/xts/R/xts.methods.R | 71 ++++++++++++-- xts-0.12.1/xts/build/vignette.rds |binary xts-0.12.1/xts/inst/doc/xts-faq.pdf |binary xts-0.12.1/xts/inst/doc/xts.pdf |binary xts-0.12.1/xts/inst/include/xts.h | 4 xts-0.12.1/xts/inst/include/xtsAPI.h | 58 ++++------- xts-0.12.1/xts/inst/unitTests/Makefile |only xts-0.12.1/xts/inst/unitTests/runit.Ops.R | 47 +++++++++ xts-0.12.1/xts/inst/unitTests/runit.first-last.R | 2 xts-0.12.1/xts/inst/unitTests/runit.index.R | 7 + xts-0.12.1/xts/inst/unitTests/runit.irts.R | 32 +++--- xts-0.12.1/xts/inst/unitTests/runit.parseISO8601.R | 26 ++--- xts-0.12.1/xts/inst/unitTests/runit.reclass.R |only xts-0.12.1/xts/inst/unitTests/runit.subset-time-of-day.R |only xts-0.12.1/xts/inst/unitTests/runit.subset.R | 58 ----------- xts-0.12.1/xts/inst/unitTests/runit.xts.R | 38 ++++--- xts-0.12.1/xts/inst/unitTests/runit.xts.methods.R | 6 - xts-0.12.1/xts/inst/unitTests/runit.zoo.R | 16 +-- xts-0.12.1/xts/man/diff.Rd | 2 xts-0.12.1/xts/man/subset.xts.Rd | 37 +++++++ xts-0.12.1/xts/man/tclass.Rd | 51 ++++++++++ xts-0.12.1/xts/man/xtsAPI.Rd | 2 xts-0.12.1/xts/src/isXts.c | 12 +- xts-0.12.1/xts/src/merge.c | 32 ++++-- xts-0.12.1/xts/src/na.c | 2 xts-0.12.1/xts/src/rbind.c | 4 xts-0.12.1/xts/src/tryXts.c | 4 41 files changed, 483 insertions(+), 244 deletions(-)
Title: Paginate the HTML Output of R Markdown with CSS for Print
Description: Use the paged media properties in CSS and the JavaScript
library 'paged.js' to split the content of an HTML document into discrete
pages. Each page can have its page size, page numbers, margin boxes, and
running headers, etc. Applications of this package include books, letters,
reports, papers, business cards, resumes, and posters.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Romain Lesur [aut, cph] (<https://orcid.org/0000-0002-0721-5595>),
Brent Thorne [aut] (<https://orcid.org/0000-0002-1099-3857>),
Xianying Tan [aut] (<https://orcid.org/0000-0002-6072-3521>),
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
RStudio, PBC [cph],
Adam Hyde [ctb] (paged.js in resources/js/),
Min-Zhong Lu [ctb] (resume.css in resources/css/),
Zulko [ctb] (poster-relaxed.css in resources/css/)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between pagedown versions 0.10 dated 2020-05-04 and 0.11 dated 2020-09-09
DESCRIPTION | 12 +++-- MD5 | 21 +++++---- NEWS.md | 6 ++ R/chrome.R | 79 ++++++++++++++++++++++++++++++++++--- R/utils.R | 4 - README.md | 4 + inst/resources/js/config.js | 56 +++++++++++++++++++++++++- man/chrome_print.Rd | 7 +++ tests/test-cran/test-utils.R | 31 ++++++++++++++ tests/test-travis.R | 7 +-- tests/test-travis/test-chrome.R | 76 +++++++++++++++++++++++++++++++++++ tests/test-travis/test-outline.Rmd |only 12 files changed, 273 insertions(+), 30 deletions(-)
Title: Data and Functions for the Book Modern Statistical Graphics
Description: A companion to the Chinese book ``Modern Statistical Graphics''.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Lijia Yu [ctb],
Xiangyun Huang [ctb],
Peng Zhao [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between MSG versions 0.4 dated 2019-09-03 and 0.5 dated 2020-09-09
DESCRIPTION | 9 - MD5 | 248 +++++++++++++++++++++++++++++++++++----- NAMESPACE | 2 NEWS.md | 4 R/MSG-package.R | 12 - R/andrews_curve.R | 2 R/char_gen.R | 2 R/color.R | 2 R/cut_plot.R | 2 R/heart_curve.R | 2 R/msg.R |only README.md | 82 +++++++++++++ data/cn_vs_us.rda |binary demo/gradArrows1.R | 6 inst/examples |only inst/extdata/SongWords.rda |binary inst/extdata/covidchina.rds |only inst/extdata/covidcountries.rds |only inst/extdata/graphnr.csv |only inst/extdata/stem-islands.txt |only inst/extdata/stem-poisson.txt |only man/BinormCircle.Rd | 8 - man/ChinaLifeEdu.Rd | 6 man/Export.USCN.Rd | 10 - man/MSG-package.Rd | 2 man/PlantCounts.Rd | 8 - man/andrews_curve.Rd | 15 +- man/char_gen.Rd | 2 man/cut_plot.Rd | 2 man/gov.cn.pct.Rd | 6 man/heart_curve.Rd | 2 man/msg.Rd |only man/quake6.Rd | 2 man/t.diff.Rd | 4 man/tukeyCount.Rd | 6 man/tvearn.Rd | 2 man/vec2col.Rd | 2 37 files changed, 378 insertions(+), 72 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression;
- generalised linear mixed models;
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.13-0 dated 2020-07-03 and 4.14-0 dated 2020-09-09
meta-4.13-0/meta/R/Fleiss93.R |only meta-4.13-0/meta/R/Fleiss93cont.R |only meta-4.13-0/meta/R/Olkin95.R |only meta-4.13-0/meta/R/TE.seTE.iqr.R |only meta-4.13-0/meta/R/TE.seTE.iqr.range.R |only meta-4.13-0/meta/R/TE.seTE.range.R |only meta-4.13-0/meta/inst/extdata/FLEISS93.MTV |only meta-4.13-0/meta/inst/extdata/Fleiss93_CR.csv |only meta-4.13-0/meta/man/Fleiss93.Rd |only meta-4.13-0/meta/man/Fleiss93cont.Rd |only meta-4.13-0/meta/man/Olkin95.Rd |only meta-4.14-0/meta/DESCRIPTION | 10 meta-4.14-0/meta/MD5 | 216 +++--- meta-4.14-0/meta/NAMESPACE | 4 meta-4.14-0/meta/NEWS.md | 147 ++++ meta-4.14-0/meta/R/Fleiss1993bin.R |only meta-4.14-0/meta/R/Fleiss1993cont.R |only meta-4.14-0/meta/R/Olkin1995.R |only meta-4.14-0/meta/R/TE.seTE.ci.R | 2 meta-4.14-0/meta/R/as.data.frame.meta.R | 14 meta-4.14-0/meta/R/baujat.R | 7 meta-4.14-0/meta/R/bubble.R | 10 meta-4.14-0/meta/R/catmeth.R | 5 meta-4.14-0/meta/R/chkchar.R | 29 meta-4.14-0/meta/R/chkcolor.R | 15 meta-4.14-0/meta/R/chklevel.R | 14 meta-4.14-0/meta/R/chknumeric.R | 10 meta-4.14-0/meta/R/ci.R | 21 meta-4.14-0/meta/R/drapery.R | 30 meta-4.14-0/meta/R/forest-internal.R | 36 - meta-4.14-0/meta/R/forest.R | 228 +++--- meta-4.14-0/meta/R/forest.metabind.R | 28 meta-4.14-0/meta/R/funnel.R | 23 meta-4.14-0/meta/R/is.relative.effect.R | 2 meta-4.14-0/meta/R/labbe.R | 34 meta-4.14-0/meta/R/lm2or.R | 36 - meta-4.14-0/meta/R/mean.sd.iqr.R |only meta-4.14-0/meta/R/mean.sd.iqr.range.R |only meta-4.14-0/meta/R/mean.sd.range.R |only meta-4.14-0/meta/R/meta-internal.R | 13 meta-4.14-0/meta/R/meta-package.R | 3 meta-4.14-0/meta/R/metabias.R | 46 - meta-4.14-0/meta/R/metabias.rm5.R | 10 meta-4.14-0/meta/R/metabin.R | 77 +- meta-4.14-0/meta/R/metabind.R | 50 - meta-4.14-0/meta/R/metacont.R | 824 +++++++++++++++++++++++- meta-4.14-0/meta/R/metacor.R | 5 meta-4.14-0/meta/R/metacr.R | 34 meta-4.14-0/meta/R/metacum.R | 28 meta-4.14-0/meta/R/metagen.R | 290 +++++--- meta-4.14-0/meta/R/metainc.R | 10 meta-4.14-0/meta/R/metainf.R | 28 meta-4.14-0/meta/R/metamean.R | 492 +++++++++++++- meta-4.14-0/meta/R/metaprop.R | 13 meta-4.14-0/meta/R/metarate.R | 13 meta-4.14-0/meta/R/metareg.R | 10 meta-4.14-0/meta/R/nnt.R | 8 meta-4.14-0/meta/R/or2smd.R | 6 meta-4.14-0/meta/R/print.meta.R | 27 meta-4.14-0/meta/R/radial.R | 6 meta-4.14-0/meta/R/read.mtv.R | 14 meta-4.14-0/meta/R/read.rm5-internal.R |only meta-4.14-0/meta/R/read.rm5.R | 499 ++------------ meta-4.14-0/meta/R/settings.meta.R | 58 - meta-4.14-0/meta/R/smd2or.R | 7 meta-4.14-0/meta/R/smoking.R | 1 meta-4.14-0/meta/R/subgroup.R | 6 meta-4.14-0/meta/R/summary.meta.R | 60 - meta-4.14-0/meta/R/summary.rm5.R | 10 meta-4.14-0/meta/R/trimfill.R | 18 meta-4.14-0/meta/R/update.meta.R | 24 meta-4.14-0/meta/R/weights.meta.R | 7 meta-4.14-0/meta/R/xlab.R | 6 meta-4.14-0/meta/data/Fleiss1993bin.rda |only meta-4.14-0/meta/data/Fleiss1993cont.rda |only meta-4.14-0/meta/data/Fleiss93.rda |binary meta-4.14-0/meta/data/Fleiss93cont.rda |binary meta-4.14-0/meta/data/Olkin1995.rda |only meta-4.14-0/meta/data/Olkin95.rda |binary meta-4.14-0/meta/inst/CITATION | 4 meta-4.14-0/meta/inst/extdata/FLEISS1993.MTV |only meta-4.14-0/meta/inst/extdata/Fleiss1993_CR.csv |only meta-4.14-0/meta/man/Fleiss1993bin.Rd |only meta-4.14-0/meta/man/Fleiss1993cont.Rd |only meta-4.14-0/meta/man/Olkin1995.Rd |only meta-4.14-0/meta/man/as.data.frame.meta.Rd | 14 meta-4.14-0/meta/man/baujat.meta.Rd | 7 meta-4.14-0/meta/man/bubble.metareg.Rd | 10 meta-4.14-0/meta/man/ci.Rd | 2 meta-4.14-0/meta/man/drapery.Rd | 6 meta-4.14-0/meta/man/forest.meta.Rd | 6 meta-4.14-0/meta/man/forest.metabind.Rd | 10 meta-4.14-0/meta/man/funnel.meta.Rd | 6 meta-4.14-0/meta/man/labbe.Rd | 6 meta-4.14-0/meta/man/meta-package.Rd | 3 meta-4.14-0/meta/man/metabias.Rd | 18 meta-4.14-0/meta/man/metabias.rm5.Rd | 10 meta-4.14-0/meta/man/metabin.Rd | 46 - meta-4.14-0/meta/man/metabind.Rd | 10 meta-4.14-0/meta/man/metacont.Rd | 220 +++++- meta-4.14-0/meta/man/metacr.Rd | 18 meta-4.14-0/meta/man/metacum.Rd | 16 meta-4.14-0/meta/man/metagen.Rd | 125 ++- meta-4.14-0/meta/man/metainc.Rd | 1 meta-4.14-0/meta/man/metainf.Rd | 16 meta-4.14-0/meta/man/metamean.Rd | 168 ++++ meta-4.14-0/meta/man/metaprop.Rd | 2 meta-4.14-0/meta/man/metareg.Rd | 10 meta-4.14-0/meta/man/nnt.Rd | 4 meta-4.14-0/meta/man/or2smd.Rd | 6 meta-4.14-0/meta/man/print.meta.Rd | 6 meta-4.14-0/meta/man/radial.Rd | 6 meta-4.14-0/meta/man/read.mtv.Rd | 14 meta-4.14-0/meta/man/read.rm5.Rd | 92 +- meta-4.14-0/meta/man/settings.meta.Rd | 2 meta-4.14-0/meta/man/smd2or.Rd | 7 meta-4.14-0/meta/man/smoking.Rd | 1 meta-4.14-0/meta/man/summary.meta.Rd | 6 meta-4.14-0/meta/man/summary.rm5.Rd | 10 meta-4.14-0/meta/man/trimfill.Rd | 8 meta-4.14-0/meta/man/update.meta.Rd | 14 meta-4.14-0/meta/man/weights.meta.Rd | 7 122 files changed, 3139 insertions(+), 1402 deletions(-)
Title: Fair Models in Machine Learning
Description: Fair machine learning regression models which take sensitive attributes into account in
model estimation. Currently implementing Komiyama et al. (2018)
<http://proceedings.mlr.press/v80/komiyama18a/komiyama18a.pdf>.
Author: Marco Scutari [aut, cre]
Maintainer: Marco Scutari <marco.scutari@gmail.com>
Diff between fairml versions 0.2 dated 2020-08-06 and 0.3 dated 2020-09-09
fairml-0.2/fairml/R/komiyama.R |only fairml-0.2/fairml/man/komiyama.Rd |only fairml-0.3/fairml/Changelog | 12 +++- fairml-0.3/fairml/DESCRIPTION | 8 +-- fairml-0.3/fairml/MD5 | 32 +++++++----- fairml-0.3/fairml/NAMESPACE | 15 ++++- fairml-0.3/fairml/R/comparisons.R | 4 + fairml-0.3/fairml/R/crossvalidation.R |only fairml-0.3/fairml/R/globals.R |only fairml-0.3/fairml/R/nclm.R |only fairml-0.3/fairml/R/predict.R | 4 - fairml-0.3/fairml/R/print-and-summary.R | 56 +++++++++++++++++++++- fairml-0.3/fairml/R/profile-plots.R | 42 +++++++++------- fairml-0.3/fairml/R/sanitization-arguments.R |only fairml-0.3/fairml/R/sanitization-cv.R |only fairml-0.3/fairml/R/sanitization-data.R | 63 +++++++++++++++---------- fairml-0.3/fairml/R/sanitization-misc.R | 13 +++++ fairml-0.3/fairml/R/sanitization-types.R | 22 ++++++++ fairml-0.3/fairml/R/utils.R |only fairml-0.3/fairml/man/fairml.cv.Rd |only fairml-0.3/fairml/man/fairness.profile.plot.Rd | 8 +-- fairml-0.3/fairml/man/nclm.Rd |only 22 files changed, 208 insertions(+), 71 deletions(-)
Title: Create Interactive Chart with the JavaScript 'ApexCharts'
Library
Description: Provides an 'htmlwidgets' interface to 'apexcharts.js'.
'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API.
'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Juned Chhipa [cph] (apexcharts.js library),
Mike Bostock [cph] (d3.format library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between apexcharter versions 0.1.5 dated 2020-06-23 and 0.1.6 dated 2020-09-09
apexcharter-0.1.5/apexcharter/man/add-lines.Rd |only apexcharter-0.1.5/apexcharter/man/run_input_demo.Rd |only apexcharter-0.1.5/apexcharter/man/run_sparkbox_demo.Rd |only apexcharter-0.1.5/apexcharter/man/run_sync_demo.Rd |only apexcharter-0.1.6/apexcharter/DESCRIPTION | 10 apexcharter-0.1.6/apexcharter/LICENSE | 2 apexcharter-0.1.6/apexcharter/MD5 | 53 - apexcharter-0.1.6/apexcharter/NAMESPACE | 14 apexcharter-0.1.6/apexcharter/NEWS.md | 9 apexcharter-0.1.6/apexcharter/R/annotations.R | 4 apexcharter-0.1.6/apexcharter/R/apex.R | 27 apexcharter-0.1.6/apexcharter/R/apexcharter.R | 6 apexcharter-0.1.6/apexcharter/R/data.R | 13 apexcharter-0.1.6/apexcharter/R/mixed-charts.R |only apexcharter-0.1.6/apexcharter/R/shiny-input.R | 43 + apexcharter-0.1.6/apexcharter/README.md | 2 apexcharter-0.1.6/apexcharter/data/climate_paris.rda |only apexcharter-0.1.6/apexcharter/inst/doc/apexcharter.html | 318 +++++--- apexcharter-0.1.6/apexcharter/inst/doc/chart-options.html | 354 +++++----- apexcharter-0.1.6/apexcharter/inst/doc/shiny-integration.html | 232 +++--- apexcharter-0.1.6/apexcharter/inst/doc/spark-box.html | 146 ++-- apexcharter-0.1.6/apexcharter/inst/doc/sync-charts.html | 208 +++-- apexcharter-0.1.6/apexcharter/inst/example-brush |only apexcharter-0.1.6/apexcharter/inst/example-brush-proxy |only apexcharter-0.1.6/apexcharter/inst/htmlwidgets/apexcharter.js | 46 - apexcharter-0.1.6/apexcharter/inst/htmlwidgets/apexcharter.yaml | 4 apexcharter-0.1.6/apexcharter/inst/htmlwidgets/lib/apexcharts-3.19/apexcharts.min.js | 6 apexcharter-0.1.6/apexcharter/inst/htmlwidgets/lib/apexcharts-3.20 |only apexcharter-0.1.6/apexcharter/man/add-line.Rd |only apexcharter-0.1.6/apexcharter/man/add-vh-lines.Rd |only apexcharter-0.1.6/apexcharter/man/climate_paris.Rd |only apexcharter-0.1.6/apexcharter/man/run_demo_input.Rd |only apexcharter-0.1.6/apexcharter/man/run_demo_sparkbox.Rd |only apexcharter-0.1.6/apexcharter/man/run_demo_sync.Rd |only apexcharter-0.1.6/apexcharter/man/set_input_export.Rd |only 35 files changed, 910 insertions(+), 587 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more. Bugs can be reported to <https://github.com/psychmeta/psychmeta/issues> or <issues@psychmeta.com>.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Wesley Gardiner [ctb] (Unit tests),
Michael T. Brannick [ctb] (Testing),
Jack Kostal [ctb] (Code for reshape_mat2dat function),
Sean Potter [ctb] (Testing; Code for cumulative and leave1out plots),
John Sakaluk [ctb] (Code for funnel and forest plots),
Yuejia (Mandy) Teng [ctb] (Testing)
Maintainer: Jeffrey A. Dahlke <jdahlke@humrro.org>
Diff between psychmeta versions 2.4.0 dated 2020-07-12 and 2.4.2 dated 2020-09-09
psychmeta-2.4.0/psychmeta/inst/doc/barebones_correlation.R |only psychmeta-2.4.0/psychmeta/inst/doc/barebones_correlation.Rmd |only psychmeta-2.4.0/psychmeta/inst/doc/barebones_correlation.html |only psychmeta-2.4.0/psychmeta/vignettes/barebones_correlation.Rmd |only psychmeta-2.4.0/psychmeta/vignettes/vignette.bib |only psychmeta-2.4.2/psychmeta/DESCRIPTION | 8 psychmeta-2.4.2/psychmeta/MD5 | 44 +- psychmeta-2.4.2/psychmeta/NEWS | 36 +- psychmeta-2.4.2/psychmeta/R/data_doc.R | 2 psychmeta-2.4.2/psychmeta/R/heterogeneity.R | 133 ++++---- psychmeta-2.4.2/psychmeta/R/ma_r_ic.R | 162 ++++------ psychmeta-2.4.2/psychmeta/R/methods_print.R | 6 psychmeta-2.4.2/psychmeta/R/output.R | 16 psychmeta-2.4.2/psychmeta/README.md | 4 psychmeta-2.4.2/psychmeta/build/vignette.rds |binary psychmeta-2.4.2/psychmeta/inst/doc/ma_r.R |only psychmeta-2.4.2/psychmeta/inst/doc/ma_r.Rmd |only psychmeta-2.4.2/psychmeta/inst/doc/ma_r.html |only psychmeta-2.4.2/psychmeta/inst/doc/overview.R |only psychmeta-2.4.2/psychmeta/inst/doc/overview.Rmd |only psychmeta-2.4.2/psychmeta/inst/doc/overview.html |only psychmeta-2.4.2/psychmeta/man/conf.limits.nc.chisq.Rd | 4 psychmeta-2.4.2/psychmeta/man/data_r_oh_2009.Rd | 2 psychmeta-2.4.2/psychmeta/man/format_num.Rd | 6 psychmeta-2.4.2/psychmeta/man/generate_bib.Rd | 2 psychmeta-2.4.2/psychmeta/man/metabulate.Rd | 2 psychmeta-2.4.2/psychmeta/man/metabulate_rmd_helper.Rd | 2 psychmeta-2.4.2/psychmeta/vignettes/ma_r.Rmd |only psychmeta-2.4.2/psychmeta/vignettes/overview.Rmd |only psychmeta-2.4.2/psychmeta/vignettes/vignette.yaml |only 30 files changed, 228 insertions(+), 201 deletions(-)
Title: Cognitive Diagnostic Computerized Adaptive Testing
Description: Provides a set of functions for conducting cognitive diagnostic computerized adaptive testing applications (Chen (2009) <doi:10.1007/s11336-009-9123-2>). It includes different item selection rules such us the global discrimination index (Kaplan, de la Torre, and Barrada (2015) <doi:10.1177/0146621614554650>) and the nonparametric selection method (Chang, Chiu, and Tsai (2019) <doi:10.1177/0146621618813113>), as well as several stopping rules. Functions for generating item banks and responses are also provided. To guide item bank calibration, model comparison at the item level can be conducted using the two-step likelihood ratio test statistic by Sorrel, de la Torre, Abad and Olea (2017) <doi:10.1027/1614-2241/a000131>.
Author: Miguel A. Sorrel [aut, cre, cph],
Pablo Nájera [aut, cph],
Francisco J. Abad [aut, cph]
Maintainer: Miguel A. Sorrel <miguel.sorrel@uam.es>
Diff between cdcatR versions 1.0.1 dated 2020-07-02 and 1.0.2 dated 2020-09-09
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/cdcat.R | 12 ++++++++---- README.md | 4 ++-- 5 files changed, 23 insertions(+), 14 deletions(-)
Title: Automatic Fixed Rank Kriging
Description: Automatic fixed rank kriging for (irregularly located)
spatial data using a class of basis functions with multi-resolution features
and ordered in terms of their resolutions. The model parameters are estimated
by maximum likelihood (ML) and the number of basis functions is determined
by Akaike's information criterion (AIC). For spatial data with either one
realization or independent replicates, the ML estimates and AIC are efficiently
computed using their closed-form expressions when no missing value occurs. Details
regarding the basis function construction, parameter estimation, and AIC calculation
can be found in Tzeng and Huang (2018) <doi:10.1080/00401706.2017.1345701>. For
data with missing values, the ML estimates are obtained using the expectation-
maximization algorithm. Apart from the number of basis functions, there are
no other tuning parameters, making the method fully automatic. Users can also
include a stationary structure in the spatial covariance, which utilizes
'LatticeKrig' package.
Author: ShengLi Tzeng [aut, cre], Hsin-Cheng Huang [aut], Wen-Ting Wang [ctb], Douglas Nychka [ctb], Colin Gillespie [ctb]
Maintainer: ShengLi Tzeng <slt.cmu@gmail.com>
Diff between autoFRK versions 1.3.1 dated 2020-08-26 and 1.3.2 dated 2020-09-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/autoFRK.Rd | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Description: Functions and datasets to support Venables and Ripley,
"Modern Applied Statistics with S" (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Kurt Hornik [trl] (partial port ca 1998),
Albrecht Gebhardt [trl] (partial port ca 1998),
David Firth [ctb]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between MASS versions 7.3-52 dated 2020-08-18 and 7.3-53 dated 2020-09-09
DESCRIPTION | 10 +++++----- MD5 | 29 +++++++++++++++-------------- R/lqs.R | 9 +++++++-- man/corresp.Rd | 6 +++--- man/cov.rob.Rd | 11 ++++++++--- man/glmmPQL.Rd | 2 +- man/lda.Rd | 6 +++--- man/lm.gls.Rd | 6 +++--- man/lm.ridge.Rd | 4 ++-- man/loglm.Rd | 7 ++++--- man/loglm1.Rd | 3 ++- man/lqs.Rd | 6 +++--- man/polr.Rd | 6 +++--- man/qda.Rd | 6 +++--- man/rlm.Rd | 4 ++-- tests/cov.mcd.R |only 16 files changed, 64 insertions(+), 51 deletions(-)
More information about shinyMonacoEditor at CRAN
Permanent link
Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Blaise Melly [ctb] (Contributions to preprocessing code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Cleve Moler [ctb] (author of several linpack routines),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.65 dated 2020-09-08 and 5.67 dated 2020-09-09
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/boot.R | 2 +- inst/ChangeLog | 10 +++++++++- man/qrisk.Rd | 2 +- man/rq.Rd | 2 +- man/rq.fit.sfnc.Rd | 2 +- 8 files changed, 24 insertions(+), 16 deletions(-)
More information about googleTagManageR at CRAN
Permanent link
Title: Easily Improve the User Experience of Your Shiny Apps in Seconds
Description: Perform common useful JavaScript operations in Shiny apps that will
greatly improve your apps without having to know any JavaScript. Examples
include: hiding an element, disabling an input, resetting an input back to
its original value, delaying code execution by a few seconds, and many more
useful functions for both the end user and the developer. 'shinyjs' can also
be used to easily call your own custom JavaScript functions from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyjs versions 1.1 dated 2020-01-13 and 2.0.0 dated 2020-09-09
shinyjs-1.1/shinyjs/tests/test-empty.js |only shinyjs-1.1/shinyjs/tests/test-error.js |only shinyjs-1.1/shinyjs/tests/test-nofunc.js |only shinyjs-1.1/shinyjs/tests/test-success.js |only shinyjs-1.1/shinyjs/tests/testthat/test-extendShinyjs.R |only shinyjs-2.0.0/shinyjs/DESCRIPTION | 16 - shinyjs-2.0.0/shinyjs/LICENSE |only shinyjs-2.0.0/shinyjs/MD5 | 113 ++++---- shinyjs-2.0.0/shinyjs/NAMESPACE | 1 shinyjs-2.0.0/shinyjs/NEWS.md | 23 + shinyjs-2.0.0/shinyjs/R/extendShinyjs.R | 174 ++++-------- shinyjs-2.0.0/shinyjs/R/inlineCSS.R | 2 shinyjs-2.0.0/shinyjs/R/jsFunc-classFuncs.R | 2 shinyjs-2.0.0/shinyjs/R/onevent.R | 4 shinyjs-2.0.0/shinyjs/R/refresh.R |only shinyjs-2.0.0/shinyjs/R/reset.R | 13 shinyjs-2.0.0/shinyjs/R/runExample.R | 2 shinyjs-2.0.0/shinyjs/R/shinyjs.R | 2 shinyjs-2.0.0/shinyjs/R/showLog.R | 8 shinyjs-2.0.0/shinyjs/R/useShinyjs.R | 11 shinyjs-2.0.0/shinyjs/R/zzz.R | 6 shinyjs-2.0.0/shinyjs/README.md | 189 ++++++-------- shinyjs-2.0.0/shinyjs/build/vignette.rds |binary shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-example.R | 2 shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-example.Rmd | 4 shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-example.html | 32 +- shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-extend.R | 2 shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-extend.Rmd | 26 - shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-extend.html | 56 ++-- shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-usage.R | 2 shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-usage.Rmd | 14 - shinyjs-2.0.0/shinyjs/inst/doc/shinyjs-usage.html | 42 +-- shinyjs-2.0.0/shinyjs/inst/doc/shinyjs.R | 2 shinyjs-2.0.0/shinyjs/inst/doc/shinyjs.Rmd | 103 +++---- shinyjs-2.0.0/shinyjs/inst/doc/shinyjs.html | 139 +++++----- shinyjs-2.0.0/shinyjs/inst/examples/basic/DESCRIPTION | 2 shinyjs-2.0.0/shinyjs/inst/examples/basic/app.R | 1 shinyjs-2.0.0/shinyjs/inst/examples/basic/helper-text.R | 6 shinyjs-2.0.0/shinyjs/inst/examples/demo/ui.R | 17 - shinyjs-2.0.0/shinyjs/inst/examples/sandbox/ui.R | 10 shinyjs-2.0.0/shinyjs/inst/img/banner.png |only shinyjs-2.0.0/shinyjs/inst/srcjs/shinyjs-default-funcs.js | 30 +- shinyjs-2.0.0/shinyjs/man/classFuncs.Rd | 25 + shinyjs-2.0.0/shinyjs/man/extendShinyjs.Rd | 117 +++----- shinyjs-2.0.0/shinyjs/man/html.Rd | 3 shinyjs-2.0.0/shinyjs/man/inlineCSS.Rd | 2 shinyjs-2.0.0/shinyjs/man/js.Rd | 4 shinyjs-2.0.0/shinyjs/man/onevent.Rd | 7 shinyjs-2.0.0/shinyjs/man/refresh.Rd |only shinyjs-2.0.0/shinyjs/man/reset.Rd | 5 shinyjs-2.0.0/shinyjs/man/runExample.Rd | 2 shinyjs-2.0.0/shinyjs/man/runcode.Rd | 14 - shinyjs-2.0.0/shinyjs/man/shinyjs-defunct.Rd | 6 shinyjs-2.0.0/shinyjs/man/shinyjs.Rd | 3 shinyjs-2.0.0/shinyjs/man/showLog.Rd | 7 shinyjs-2.0.0/shinyjs/man/stateFuncs.Rd | 3 shinyjs-2.0.0/shinyjs/man/useShinyjs.Rd | 7 shinyjs-2.0.0/shinyjs/man/visibilityFuncs.Rd | 62 +++- shinyjs-2.0.0/shinyjs/vignettes/shinyjs-example.Rmd | 4 shinyjs-2.0.0/shinyjs/vignettes/shinyjs-extend.Rmd | 26 - shinyjs-2.0.0/shinyjs/vignettes/shinyjs-usage.Rmd | 14 - shinyjs-2.0.0/shinyjs/vignettes/shinyjs.Rmd | 103 +++---- 62 files changed, 737 insertions(+), 733 deletions(-)
Title: Analyzing Partial Rankings in Networks
Description: Implements methods for centrality related analyses of networks.
While the package includes the possibility to build more than 20 indices,
its main focus lies on index-free assessment of centrality via partial
rankings obtained by neighborhood-inclusion or positional dominance. These
partial rankings can be analyzed with different methods, including
probabilistic methods like computing expected node ranks and relative
rank probabilities (how likely is it that a node is more central than another?).
The methodology is described in depth in the vignettes and in
Schoch (2018) <doi:10.1016/j.socnet.2017.12.003>.
Author: David Schoch [aut, cre],
Julian Müller [ctb]
Maintainer: David Schoch <david.schoch@manchester.ac.uk>
Diff between netrankr versions 0.2.1 dated 2018-09-18 and 0.3.0 dated 2020-09-09
DESCRIPTION | 10 MD5 | 100 +++-- NAMESPACE | 1 NEWS.md | 15 R/RcppExports.R | 16 R/comparable.pairs.R | 32 + R/majorization.gap.R | 46 ++ R/netrankr.R | 1 R/threshold.graph.R | 40 +- README.md | 238 ++++++++++++- build/vignette.rds |binary inst/CITATION | 1 inst/doc/benchmarks.R | 14 inst/doc/benchmarks.html | 249 +++++++++++++- inst/doc/centrality_indices.R | 12 inst/doc/centrality_indices.Rmd | 2 inst/doc/centrality_indices.html | 501 ++++++++++++++++++++++------- inst/doc/indirect_relations.R | 10 inst/doc/indirect_relations.Rmd | 2 inst/doc/indirect_relations.html | 415 +++++++++++++++++++----- inst/doc/neighborhood_inclusion.R | 18 - inst/doc/neighborhood_inclusion.html | 434 ++++++++++++++++++++----- inst/doc/partial_centrality.R | 12 inst/doc/partial_centrality.html | 426 ++++++++++++++++++++---- inst/doc/positional_dominance.R | 12 inst/doc/positional_dominance.Rmd | 2 inst/doc/positional_dominance.html | 422 ++++++++++++++++++++---- inst/doc/probabilistic_cent.R | 16 inst/doc/probabilistic_cent.html | 413 +++++++++++++++++++----- inst/doc/threshold_graph.R | 22 - inst/doc/threshold_graph.Rmd | 2 inst/doc/threshold_graph.html | 440 ++++++++++++++++++++----- inst/doc/use_case.R | 50 +- inst/doc/use_case.Rmd | 2 inst/doc/use_case.html | 600 +++++++++++++++++++++++++---------- man/comparable_pairs.Rd | 11 man/figures |only man/florentine_m.Rd | 4 man/incomparable_pairs.Rd |only man/indirect_relations.Rd | 12 man/netrankr.Rd | 2 man/positional_dominance.Rd | 2 man/threshold_graph.Rd | 6 man/transform_relations.Rd | 2 src/RcppExports.cpp | 50 +- vignettes/centrality_indices.Rmd | 2 vignettes/indirect_relations.Rmd | 2 vignettes/positional_dominance.Rmd | 2 vignettes/threshold_graph.Rmd | 2 vignettes/use_case.Rmd | 2 50 files changed, 3638 insertions(+), 1037 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'Microsoft Word' and 'Microsoft PowerPoint' documents.
Functions are provided to let users create tables, modify and format their content.
It extends package 'officer' that does not contain any feature for customized tabular reporting
and can be used within R markdown documents.
Author: David Gohel [aut, cre],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] (rmarkdown for docx output),
Titouan Robert [ctb],
Michael Barrowman [ctb] (inline footnotes),
Atsushi Yasumoto [ctb] (support for bookdown cross reference)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.5.10 dated 2020-05-15 and 0.5.11 dated 2020-09-09
flextable-0.5.10/flextable/NEWS |only flextable-0.5.11/flextable/DESCRIPTION | 12 flextable-0.5.11/flextable/MD5 | 94 ++-- flextable-0.5.11/flextable/NAMESPACE | 9 flextable-0.5.11/flextable/NEWS.md |only flextable-0.5.11/flextable/R/01_fpstruct.R | 32 - flextable-0.5.11/flextable/R/formatters.R | 12 flextable-0.5.11/flextable/R/html_str.R | 310 +++++++++++++- flextable-0.5.11/flextable/R/printers.R | 19 flextable-0.5.11/flextable/R/read_structure.R |only flextable-0.5.11/flextable/R/styles.R | 45 +- flextable-0.5.11/flextable/R/tabpart_tools.R | 6 flextable-0.5.11/flextable/R/utils.R | 14 flextable-0.5.11/flextable/README.md | 28 - flextable-0.5.11/flextable/build/vignette.rds |binary flextable-0.5.11/flextable/inst/doc/display.html | 365 +++++++++-------- flextable-0.5.11/flextable/inst/doc/format.R | 7 flextable-0.5.11/flextable/inst/doc/format.Rmd | 27 + flextable-0.5.11/flextable/inst/doc/format.html | 317 ++++++++------ flextable-0.5.11/flextable/inst/doc/layout.Rmd | 2 flextable-0.5.11/flextable/inst/doc/layout.html | 351 ++++++++-------- flextable-0.5.11/flextable/inst/doc/overview.Rmd | 15 flextable-0.5.11/flextable/inst/doc/overview.html | 196 +++++---- flextable-0.5.11/flextable/inst/doc/selectors.html | 141 ++++-- flextable-0.5.11/flextable/man/align.Rd | 1 flextable-0.5.11/flextable/man/bg.Rd | 1 flextable-0.5.11/flextable/man/bold.Rd | 1 flextable-0.5.11/flextable/man/colformat_char.Rd | 3 flextable-0.5.11/flextable/man/colformat_int.Rd | 5 flextable-0.5.11/flextable/man/colformat_lgl.Rd | 3 flextable-0.5.11/flextable/man/colformat_num.Rd | 6 flextable-0.5.11/flextable/man/color.Rd | 1 flextable-0.5.11/flextable/man/compose.Rd | 3 flextable-0.5.11/flextable/man/empty_blanks.Rd | 1 flextable-0.5.11/flextable/man/figures/fig_formats.png |only flextable-0.5.11/flextable/man/figures/logo.png |only flextable-0.5.11/flextable/man/font.Rd | 1 flextable-0.5.11/flextable/man/fontsize.Rd | 1 flextable-0.5.11/flextable/man/htmltools_value.Rd | 2 flextable-0.5.11/flextable/man/italic.Rd | 1 flextable-0.5.11/flextable/man/knit_print.flextable.Rd | 2 flextable-0.5.11/flextable/man/line_spacing.Rd |only flextable-0.5.11/flextable/man/padding.Rd | 1 flextable-0.5.11/flextable/man/rotate.Rd | 1 flextable-0.5.11/flextable/man/save_as_html.Rd | 6 flextable-0.5.11/flextable/man/set_formatter.Rd | 16 flextable-0.5.11/flextable/man/valign.Rd | 1 flextable-0.5.11/flextable/tests/testthat/test-text.R | 6 flextable-0.5.11/flextable/vignettes/format.Rmd | 27 + flextable-0.5.11/flextable/vignettes/layout.Rmd | 2 flextable-0.5.11/flextable/vignettes/overview.Rmd | 15 51 files changed, 1341 insertions(+), 768 deletions(-)
Title: Character String Processing Facilities
Description: A multitude of character string/text/natural language
processing tools: pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation, sorting, padding,
wrapping, Unicode normalisation, date-time formatting and parsing,
and many more. They are fast, consistent, convenient, and -
owing to the use of the 'ICU' (International Components for Unicode)
library - portable across all locales and platforms.
Author: Marek Gagolewski [aut, cre, cph] (<https://orcid.org/0000-0003-0637-6028>),
Bartek Tartanus [ctb],
and other contributors (stringi source code);
IBM, Unicode, Inc. and other contributors (ICU4C source code);
Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.4.6 dated 2020-02-17 and 1.5.3 dated 2020-09-09
stringi-1.4.6/stringi/R/draft_files.R |only stringi-1.4.6/stringi/man/oper_comparison.Rd |only stringi-1.4.6/stringi/man/oper_plus.Rd |only stringi-1.4.6/stringi/man/stringi-arguments.Rd |only stringi-1.4.6/stringi/man/stringi-encoding.Rd |only stringi-1.4.6/stringi/man/stringi-locale.Rd |only stringi-1.4.6/stringi/man/stringi-package.Rd |only stringi-1.4.6/stringi/man/stringi-search-boundaries.Rd |only stringi-1.4.6/stringi/man/stringi-search-charclass.Rd |only stringi-1.4.6/stringi/man/stringi-search-coll.Rd |only stringi-1.4.6/stringi/man/stringi-search-fixed.Rd |only stringi-1.4.6/stringi/man/stringi-search-regex.Rd |only stringi-1.4.6/stringi/man/stringi-search.Rd |only stringi-1.5.3/stringi/DESCRIPTION | 37 stringi-1.5.3/stringi/INSTALL | 10 stringi-1.5.3/stringi/LICENSE | 7 stringi-1.5.3/stringi/MD5 | 536 +-- stringi-1.5.3/stringi/NAMESPACE | 6 stringi-1.5.3/stringi/NEWS | 70 stringi-1.5.3/stringi/R/ICU_settings.R | 77 stringi-1.5.3/stringi/R/compare.R | 218 - 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stringi-1.5.3/stringi/R/todo_split.R | 12 stringi-1.5.3/stringi/R/trans_casemap.R | 37 stringi-1.5.3/stringi/R/trans_normalization.R | 68 stringi-1.5.3/stringi/R/trans_other.R | 14 stringi-1.5.3/stringi/R/trans_transliterate.R | 34 stringi-1.5.3/stringi/R/trim.R | 52 stringi-1.5.3/stringi/R/utils.R | 164 - stringi-1.5.3/stringi/R/wrap.R | 64 stringi-1.5.3/stringi/configure | 49 stringi-1.5.3/stringi/configure.ac | 50 stringi-1.5.3/stringi/inst/AUTHORS | 2 stringi-1.5.3/stringi/man/about_arguments.Rd |only stringi-1.5.3/stringi/man/about_encoding.Rd |only stringi-1.5.3/stringi/man/about_locale.Rd |only stringi-1.5.3/stringi/man/about_search.Rd |only stringi-1.5.3/stringi/man/about_search_boundaries.Rd |only stringi-1.5.3/stringi/man/about_search_charclass.Rd |only stringi-1.5.3/stringi/man/about_search_coll.Rd |only stringi-1.5.3/stringi/man/about_search_fixed.Rd |only stringi-1.5.3/stringi/man/about_search_regex.Rd |only stringi-1.5.3/stringi/man/about_stringi.Rd |only stringi-1.5.3/stringi/man/operator_add.Rd |only stringi-1.5.3/stringi/man/operator_compare.Rd |only stringi-1.5.3/stringi/man/operator_dollar.Rd |only stringi-1.5.3/stringi/man/stri_compare.Rd | 29 stringi-1.5.3/stringi/man/stri_count.Rd | 38 stringi-1.5.3/stringi/man/stri_count_boundaries.Rd | 35 stringi-1.5.3/stringi/man/stri_datetime_add.Rd | 20 stringi-1.5.3/stringi/man/stri_datetime_create.Rd | 6 stringi-1.5.3/stringi/man/stri_datetime_fields.Rd | 10 stringi-1.5.3/stringi/man/stri_datetime_format.Rd | 14 stringi-1.5.3/stringi/man/stri_datetime_fstr.Rd | 4 stringi-1.5.3/stringi/man/stri_datetime_symbols.Rd | 42 stringi-1.5.3/stringi/man/stri_detect.Rd | 36 stringi-1.5.3/stringi/man/stri_dup.Rd | 28 stringi-1.5.3/stringi/man/stri_duplicated.Rd | 65 stringi-1.5.3/stringi/man/stri_enc_detect.Rd | 16 stringi-1.5.3/stringi/man/stri_enc_detect2.Rd | 20 stringi-1.5.3/stringi/man/stri_enc_fromutf32.Rd | 4 stringi-1.5.3/stringi/man/stri_enc_info.Rd | 6 stringi-1.5.3/stringi/man/stri_enc_isascii.Rd | 6 stringi-1.5.3/stringi/man/stri_enc_isutf16.Rd | 6 stringi-1.5.3/stringi/man/stri_enc_isutf8.Rd | 12 stringi-1.5.3/stringi/man/stri_enc_list.Rd | 6 stringi-1.5.3/stringi/man/stri_enc_mark.Rd | 8 stringi-1.5.3/stringi/man/stri_enc_set.Rd | 4 stringi-1.5.3/stringi/man/stri_enc_toascii.Rd | 4 stringi-1.5.3/stringi/man/stri_enc_tonative.Rd | 4 stringi-1.5.3/stringi/man/stri_enc_toutf32.Rd | 4 stringi-1.5.3/stringi/man/stri_enc_toutf8.Rd | 4 stringi-1.5.3/stringi/man/stri_encode.Rd | 45 stringi-1.5.3/stringi/man/stri_escape_unicode.Rd | 6 stringi-1.5.3/stringi/man/stri_extract.Rd | 16 stringi-1.5.3/stringi/man/stri_extract_boundaries.Rd | 23 stringi-1.5.3/stringi/man/stri_flatten.Rd | 6 stringi-1.5.3/stringi/man/stri_info.Rd | 4 stringi-1.5.3/stringi/man/stri_join.Rd | 4 stringi-1.5.3/stringi/man/stri_join_list.Rd | 20 stringi-1.5.3/stringi/man/stri_length.Rd | 2 stringi-1.5.3/stringi/man/stri_list2matrix.Rd | 26 stringi-1.5.3/stringi/man/stri_locale_info.Rd | 12 stringi-1.5.3/stringi/man/stri_locale_list.Rd | 6 stringi-1.5.3/stringi/man/stri_locale_set.Rd | 10 stringi-1.5.3/stringi/man/stri_locate.Rd | 18 stringi-1.5.3/stringi/man/stri_locate_boundaries.Rd | 39 stringi-1.5.3/stringi/man/stri_match.Rd | 40 stringi-1.5.3/stringi/man/stri_na2empty.Rd | 2 stringi-1.5.3/stringi/man/stri_opts_brkiter.Rd | 19 stringi-1.5.3/stringi/man/stri_opts_collator.Rd | 64 stringi-1.5.3/stringi/man/stri_opts_fixed.Rd | 20 stringi-1.5.3/stringi/man/stri_opts_regex.Rd | 38 stringi-1.5.3/stringi/man/stri_order.Rd | 19 stringi-1.5.3/stringi/man/stri_pad.Rd | 14 stringi-1.5.3/stringi/man/stri_rand_lipsum.Rd | 14 stringi-1.5.3/stringi/man/stri_rand_shuffle.Rd | 2 stringi-1.5.3/stringi/man/stri_rand_strings.Rd | 2 stringi-1.5.3/stringi/man/stri_read_lines.Rd | 44 stringi-1.5.3/stringi/man/stri_read_raw.Rd | 21 stringi-1.5.3/stringi/man/stri_remove_empty.Rd | 8 stringi-1.5.3/stringi/man/stri_replace.Rd | 54 stringi-1.5.3/stringi/man/stri_replace_na.Rd | 8 stringi-1.5.3/stringi/man/stri_reverse.Rd | 4 stringi-1.5.3/stringi/man/stri_sort.Rd | 15 stringi-1.5.3/stringi/man/stri_sort_key.Rd |only stringi-1.5.3/stringi/man/stri_split.Rd | 52 stringi-1.5.3/stringi/man/stri_split_boundaries.Rd | 43 stringi-1.5.3/stringi/man/stri_split_lines.Rd | 14 stringi-1.5.3/stringi/man/stri_startsendswith.Rd | 77 stringi-1.5.3/stringi/man/stri_stats_general.Rd | 8 stringi-1.5.3/stringi/man/stri_stats_latex.Rd | 11 stringi-1.5.3/stringi/man/stri_sub.Rd | 28 stringi-1.5.3/stringi/man/stri_sub_all.Rd | 10 stringi-1.5.3/stringi/man/stri_subset.Rd | 15 stringi-1.5.3/stringi/man/stri_timezone_info.Rd | 21 stringi-1.5.3/stringi/man/stri_timezone_list.Rd | 6 stringi-1.5.3/stringi/man/stri_timezone_set.Rd | 4 stringi-1.5.3/stringi/man/stri_trans_casemap.Rd | 27 stringi-1.5.3/stringi/man/stri_trans_char.Rd | 6 stringi-1.5.3/stringi/man/stri_trans_general.Rd | 18 stringi-1.5.3/stringi/man/stri_trans_nf.Rd | 12 stringi-1.5.3/stringi/man/stri_trim.Rd | 20 stringi-1.5.3/stringi/man/stri_unescape_unicode.Rd | 6 stringi-1.5.3/stringi/man/stri_unique.Rd | 15 stringi-1.5.3/stringi/man/stri_width.Rd | 8 stringi-1.5.3/stringi/man/stri_wrap.Rd | 32 stringi-1.5.3/stringi/man/stri_write_lines.Rd | 26 stringi-1.5.3/stringi/src/stri_ICU_settings.cpp | 46 stringi-1.5.3/stringi/src/stri_TODO_justify.cpp | 4 stringi-1.5.3/stringi/src/stri_TODO_splitpos.cpp | 4 stringi-1.5.3/stringi/src/stri_TODO_uchar.cpp | 4 stringi-1.5.3/stringi/src/stri_brkiter.cpp | 441 +-- stringi-1.5.3/stringi/src/stri_brkiter.h | 304 +- stringi-1.5.3/stringi/src/stri_bytesearch_matcher.h | 624 ++-- stringi-1.5.3/stringi/src/stri_collator.cpp | 236 - stringi-1.5.3/stringi/src/stri_common.cpp | 256 - stringi-1.5.3/stringi/src/stri_compare.cpp | 302 +- stringi-1.5.3/stringi/src/stri_container_base.cpp | 46 stringi-1.5.3/stringi/src/stri_container_base.h | 86 stringi-1.5.3/stringi/src/stri_container_bytesearch.cpp | 148 - stringi-1.5.3/stringi/src/stri_container_bytesearch.h | 46 stringi-1.5.3/stringi/src/stri_container_charclass.h | 210 - stringi-1.5.3/stringi/src/stri_container_double.h | 76 stringi-1.5.3/stringi/src/stri_container_integer.h | 76 stringi-1.5.3/stringi/src/stri_container_listint.cpp | 114 stringi-1.5.3/stringi/src/stri_container_listint.h | 54 stringi-1.5.3/stringi/src/stri_container_listraw.cpp | 142 - stringi-1.5.3/stringi/src/stri_container_listraw.h | 54 stringi-1.5.3/stringi/src/stri_container_listutf8.cpp | 140 - stringi-1.5.3/stringi/src/stri_container_listutf8.h | 58 stringi-1.5.3/stringi/src/stri_container_logical.h | 76 stringi-1.5.3/stringi/src/stri_container_regex.cpp | 241 + stringi-1.5.3/stringi/src/stri_container_regex.h | 41 stringi-1.5.3/stringi/src/stri_container_usearch.cpp | 114 stringi-1.5.3/stringi/src/stri_container_usearch.h | 34 stringi-1.5.3/stringi/src/stri_container_utf16.cpp | 420 +-- stringi-1.5.3/stringi/src/stri_container_utf16.h | 126 stringi-1.5.3/stringi/src/stri_container_utf8.cpp | 300 +- stringi-1.5.3/stringi/src/stri_container_utf8.h | 150 - stringi-1.5.3/stringi/src/stri_container_utf8_indexable.cpp | 362 +- stringi-1.5.3/stringi/src/stri_container_utf8_indexable.h | 46 stringi-1.5.3/stringi/src/stri_encoding_conversion.cpp | 906 +++--- stringi-1.5.3/stringi/src/stri_encoding_detection.cpp | 1264 ++++----- stringi-1.5.3/stringi/src/stri_encoding_management.cpp | 366 +- stringi-1.5.3/stringi/src/stri_escape.cpp | 244 - stringi-1.5.3/stringi/src/stri_exception.cpp | 529 +-- stringi-1.5.3/stringi/src/stri_exception.h | 146 - stringi-1.5.3/stringi/src/stri_exports.h | 167 - stringi-1.5.3/stringi/src/stri_external.h | 4 stringi-1.5.3/stringi/src/stri_interval.h | 24 stringi-1.5.3/stringi/src/stri_intvec.h | 102 stringi-1.5.3/stringi/src/stri_join.cpp | 1234 ++++----- stringi-1.5.3/stringi/src/stri_length.cpp | 328 +- stringi-1.5.3/stringi/src/stri_macros.h | 4 stringi-1.5.3/stringi/src/stri_messages.h | 36 stringi-1.5.3/stringi/src/stri_pad.cpp | 178 - stringi-1.5.3/stringi/src/stri_prepare_arg.cpp | 1358 +++++----- stringi-1.5.3/stringi/src/stri_random.cpp | 300 +- stringi-1.5.3/stringi/src/stri_reverse.cpp | 116 stringi-1.5.3/stringi/src/stri_search_boundaries_count.cpp | 64 stringi-1.5.3/stringi/src/stri_search_boundaries_extract.cpp | 200 - stringi-1.5.3/stringi/src/stri_search_boundaries_locate.cpp | 212 - stringi-1.5.3/stringi/src/stri_search_boundaries_split.cpp | 190 - stringi-1.5.3/stringi/src/stri_search_class_count.cpp | 86 stringi-1.5.3/stringi/src/stri_search_class_detect.cpp | 98 stringi-1.5.3/stringi/src/stri_search_class_extract.cpp | 250 - stringi-1.5.3/stringi/src/stri_search_class_locate.cpp | 210 - stringi-1.5.3/stringi/src/stri_search_class_replace.cpp | 438 +-- stringi-1.5.3/stringi/src/stri_search_class_split.cpp | 232 - stringi-1.5.3/stringi/src/stri_search_class_startsendswith.cpp | 226 - stringi-1.5.3/stringi/src/stri_search_class_subset.cpp | 218 - stringi-1.5.3/stringi/src/stri_search_class_trim.cpp | 128 stringi-1.5.3/stringi/src/stri_search_coll_count.cpp | 89 stringi-1.5.3/stringi/src/stri_search_coll_detect.cpp | 108 stringi-1.5.3/stringi/src/stri_search_coll_extract.cpp | 274 +- stringi-1.5.3/stringi/src/stri_search_coll_locate.cpp | 268 + stringi-1.5.3/stringi/src/stri_search_coll_replace.cpp | 400 +- stringi-1.5.3/stringi/src/stri_search_coll_split.cpp | 249 - stringi-1.5.3/stringi/src/stri_search_coll_startsendswith.cpp | 300 +- stringi-1.5.3/stringi/src/stri_search_coll_subset.cpp | 210 - stringi-1.5.3/stringi/src/stri_search_common.cpp | 56 stringi-1.5.3/stringi/src/stri_search_fixed_count.cpp | 66 stringi-1.5.3/stringi/src/stri_search_fixed_detect.cpp | 87 stringi-1.5.3/stringi/src/stri_search_fixed_extract.cpp | 220 - stringi-1.5.3/stringi/src/stri_search_fixed_locate.cpp | 226 - stringi-1.5.3/stringi/src/stri_search_fixed_replace.cpp | 328 +- stringi-1.5.3/stringi/src/stri_search_fixed_split.cpp | 240 - stringi-1.5.3/stringi/src/stri_search_fixed_startsendswith.cpp | 205 - stringi-1.5.3/stringi/src/stri_search_fixed_subset.cpp | 162 - stringi-1.5.3/stringi/src/stri_search_in.cpp | 4 stringi-1.5.3/stringi/src/stri_search_other_split.cpp | 236 - stringi-1.5.3/stringi/src/stri_search_regex_count.cpp | 86 stringi-1.5.3/stringi/src/stri_search_regex_detect.cpp | 86 stringi-1.5.3/stringi/src/stri_search_regex_extract.cpp | 301 +- stringi-1.5.3/stringi/src/stri_search_regex_locate.cpp | 271 + stringi-1.5.3/stringi/src/stri_search_regex_match.cpp | 405 +- stringi-1.5.3/stringi/src/stri_search_regex_replace.cpp | 297 +- stringi-1.5.3/stringi/src/stri_search_regex_split.cpp | 292 +- stringi-1.5.3/stringi/src/stri_search_regex_subset.cpp | 208 - stringi-1.5.3/stringi/src/stri_sort.cpp | 641 ++-- stringi-1.5.3/stringi/src/stri_stats.cpp | 408 +-- stringi-1.5.3/stringi/src/stri_string8.h | 456 +-- stringi-1.5.3/stringi/src/stri_string8buf.h | 198 - stringi-1.5.3/stringi/src/stri_stringi.cpp | 467 +-- stringi-1.5.3/stringi/src/stri_stringi.h | 10 stringi-1.5.3/stringi/src/stri_sub.cpp | 770 ++--- stringi-1.5.3/stringi/src/stri_test.cpp | 82 stringi-1.5.3/stringi/src/stri_time_calendar.cpp | 598 ++-- stringi-1.5.3/stringi/src/stri_time_format.cpp | 462 +-- stringi-1.5.3/stringi/src/stri_time_symbols.cpp | 220 - stringi-1.5.3/stringi/src/stri_time_zone.cpp | 257 + stringi-1.5.3/stringi/src/stri_trans_casemap.cpp | 292 +- stringi-1.5.3/stringi/src/stri_trans_normalization.cpp | 190 - stringi-1.5.3/stringi/src/stri_trans_other.cpp | 200 - stringi-1.5.3/stringi/src/stri_trans_transliterate.cpp | 132 stringi-1.5.3/stringi/src/stri_ucnv.cpp | 400 +- stringi-1.5.3/stringi/src/stri_ucnv.h | 192 - stringi-1.5.3/stringi/src/stri_uloc.cpp | 94 stringi-1.5.3/stringi/src/stri_utils.cpp | 142 - stringi-1.5.3/stringi/src/stri_wrap.cpp | 672 ++-- 283 files changed, 18258 insertions(+), 16654 deletions(-)
Title: An Implementation of 'Salesforce' APIs Using Tidy Principles
Description: Functions connecting to the 'Salesforce' Platform APIs (REST, SOAP,
Bulk 1.0, Bulk 2.0, Metadata, Reports and Dashboards)
<https://trailhead.salesforce.com/en/content/learn/modules/api_basics/api_basics_overview>.
"API" is an acronym for "application programming interface". Most all calls
from these APIs are supported as they use CSV, XML or JSON data that can be
parsed into R data structures. For more details please see the 'Salesforce'
API documentation and this package's website
<https://stevenmmortimer.github.io/salesforcer/> for more information,
documentation, and examples.
Author: Steven M. Mortimer [aut, cre],
Takekatsu Hiramura [ctb],
Jennifer Bryan [ctb, cph],
Joanna Zhao [ctb, cph]
Maintainer: Steven M. Mortimer <mortimer.steven.m@gmail.com>
Diff between salesforcer versions 0.2.0 dated 2020-07-21 and 0.2.2 dated 2020-09-09
salesforcer-0.2.0/salesforcer/build/salesforcer.pdf |only salesforcer-0.2.2/salesforcer/DESCRIPTION | 29 salesforcer-0.2.2/salesforcer/MD5 | 428 +- salesforcer-0.2.2/salesforcer/NAMESPACE | 13 salesforcer-0.2.2/salesforcer/NEWS.md | 58 salesforcer-0.2.2/salesforcer/R/analytics-dashboard.R | 26 salesforcer-0.2.2/salesforcer/R/analytics-notification.R | 12 salesforcer-0.2.2/salesforcer/R/analytics-report-folder.R | 26 salesforcer-0.2.2/salesforcer/R/analytics-report.R | 328 + salesforcer-0.2.2/salesforcer/R/attachments.R | 470 ++ salesforcer-0.2.2/salesforcer/R/auth.R | 22 salesforcer-0.2.2/salesforcer/R/bulk-operation.R | 67 salesforcer-0.2.2/salesforcer/R/bulk-query.R | 6 salesforcer-0.2.2/salesforcer/R/compatibility.R | 52 salesforcer-0.2.2/salesforcer/R/create-metadata.R | 5 salesforcer-0.2.2/salesforcer/R/create.R | 10 salesforcer-0.2.2/salesforcer/R/delete-metadata.R | 5 salesforcer-0.2.2/salesforcer/R/delete.R | 11 salesforcer-0.2.2/salesforcer/R/describe-metadata.R | 2 salesforcer-0.2.2/salesforcer/R/describe.R | 4 salesforcer-0.2.2/salesforcer/R/endpoints-rest.R | 9 salesforcer-0.2.2/salesforcer/R/list-metadata.R | 4 salesforcer-0.2.2/salesforcer/R/query.R | 19 salesforcer-0.2.2/salesforcer/R/read-metadata.R | 17 salesforcer-0.2.2/salesforcer/R/rename-metadata.R | 8 salesforcer-0.2.2/salesforcer/R/retrieve-metadata.R | 12 salesforcer-0.2.2/salesforcer/R/retrieve.R | 10 salesforcer-0.2.2/salesforcer/R/salesforcer-package.R | 8 salesforcer-0.2.2/salesforcer/R/search.R | 31 salesforcer-0.2.2/salesforcer/R/update-metadata.R | 7 salesforcer-0.2.2/salesforcer/R/update.R | 14 salesforcer-0.2.2/salesforcer/R/upsert-metadata.R | 7 salesforcer-0.2.2/salesforcer/R/upsert.R | 10 salesforcer-0.2.2/salesforcer/R/utils-control.R | 25 salesforcer-0.2.2/salesforcer/R/utils-datatypes.R |only salesforcer-0.2.2/salesforcer/R/utils-httr.R | 100 salesforcer-0.2.2/salesforcer/R/utils-input-validation.R |only salesforcer-0.2.2/salesforcer/R/utils-metadata.R | 1682 +--------- salesforcer-0.2.2/salesforcer/R/utils-org.R | 48 salesforcer-0.2.2/salesforcer/R/utils-query.R | 151 salesforcer-0.2.2/salesforcer/R/utils-report.R | 11 salesforcer-0.2.2/salesforcer/R/utils-xml.R | 6 salesforcer-0.2.2/salesforcer/R/utils.R | 595 --- salesforcer-0.2.2/salesforcer/README.md | 90 salesforcer-0.2.2/salesforcer/inst/WORDLIST | 4 salesforcer-0.2.2/salesforcer/inst/doc/getting-started.R | 2 salesforcer-0.2.2/salesforcer/inst/doc/getting-started.Rmd | 43 salesforcer-0.2.2/salesforcer/inst/doc/getting-started.html | 251 - salesforcer-0.2.2/salesforcer/inst/doc/passing-control-args.R | 4 salesforcer-0.2.2/salesforcer/inst/doc/passing-control-args.Rmd | 60 salesforcer-0.2.2/salesforcer/inst/doc/passing-control-args.html | 172 - salesforcer-0.2.2/salesforcer/inst/doc/supported-queries.R | 6 salesforcer-0.2.2/salesforcer/inst/doc/supported-queries.Rmd | 28 salesforcer-0.2.2/salesforcer/inst/doc/supported-queries.html | 569 +-- salesforcer-0.2.2/salesforcer/inst/doc/transitioning-from-RForcecom.R | 3 salesforcer-0.2.2/salesforcer/inst/doc/transitioning-from-RForcecom.Rmd | 42 salesforcer-0.2.2/salesforcer/inst/doc/transitioning-from-RForcecom.html | 292 - salesforcer-0.2.2/salesforcer/inst/doc/working-with-attachments.R | 36 salesforcer-0.2.2/salesforcer/inst/doc/working-with-attachments.Rmd | 90 salesforcer-0.2.2/salesforcer/inst/doc/working-with-attachments.html | 336 + salesforcer-0.2.2/salesforcer/inst/doc/working-with-bulk-apis.R | 5 salesforcer-0.2.2/salesforcer/inst/doc/working-with-bulk-apis.Rmd | 5 salesforcer-0.2.2/salesforcer/inst/doc/working-with-bulk-apis.html | 269 - salesforcer-0.2.2/salesforcer/inst/doc/working-with-metadata.R | 4 salesforcer-0.2.2/salesforcer/inst/doc/working-with-metadata.Rmd | 4 salesforcer-0.2.2/salesforcer/inst/doc/working-with-metadata.html | 320 - salesforcer-0.2.2/salesforcer/inst/doc/working-with-reports.Rmd | 18 salesforcer-0.2.2/salesforcer/inst/doc/working-with-reports.html | 430 +- salesforcer-0.2.2/salesforcer/man/accepted_controls_by_operation.Rd | 6 salesforcer-0.2.2/salesforcer/man/build_metadata_xml_from_list.Rd | 2 salesforcer-0.2.2/salesforcer/man/build_soap_xml_from_list.Rd | 4 salesforcer-0.2.2/salesforcer/man/catch_unknown_api.Rd | 2 salesforcer-0.2.2/salesforcer/man/check_and_encode_files.Rd | 8 salesforcer-0.2.2/salesforcer/man/get_os.Rd | 2 salesforcer-0.2.2/salesforcer/man/make_rest_record_url.Rd |only salesforcer-0.2.2/salesforcer/man/message_w_errors_listed.Rd | 2 salesforcer-0.2.2/salesforcer/man/metadata_type_validator.Rd | 1066 +----- salesforcer-0.2.2/salesforcer/man/parameterized_search_control.Rd | 17 salesforcer-0.2.2/salesforcer/man/parse_error_code_and_message.Rd |only salesforcer-0.2.2/salesforcer/man/patched_tempdir.Rd |only salesforcer-0.2.2/salesforcer/man/rforcecom.bulkAction.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.bulkQuery.Rd | 4 salesforcer-0.2.2/salesforcer/man/rforcecom.create.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.delete.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.getObjectDescription.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.getServerTimestamp.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.login.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.query.Rd | 4 salesforcer-0.2.2/salesforcer/man/rforcecom.retrieve.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.search.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.update.Rd | 2 salesforcer-0.2.2/salesforcer/man/rforcecom.upsert.Rd | 2 salesforcer-0.2.2/salesforcer/man/safe_bind_rows.Rd |only salesforcer-0.2.2/salesforcer/man/salesforcer-package.Rd | 10 salesforcer-0.2.2/salesforcer/man/sf_access_token.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_analytics_notification_create.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_analytics_notification_delete.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_analytics_notification_describe.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_analytics_notification_update.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_analytics_notifications_limits.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_analytics_notifications_list.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_auth.Rd | 8 salesforcer-0.2.2/salesforcer/man/sf_convert_lead.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_copy_report.Rd | 24 salesforcer-0.2.2/salesforcer/man/sf_create.Rd | 8 salesforcer-0.2.2/salesforcer/man/sf_create_attachment.Rd | 45 salesforcer-0.2.2/salesforcer/man/sf_create_attachment_bulk_v1.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_create_attachment_rest.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_create_attachment_soap.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_create_job_bulk.Rd | 6 salesforcer-0.2.2/salesforcer/man/sf_create_metadata.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_create_report.Rd | 24 salesforcer-0.2.2/salesforcer/man/sf_dashboard_components_describe.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_copy.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_delete.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_describe.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_filter_operators_list.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_filter_options_analysis.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_refresh.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_results.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_set_sticky_filter.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_status.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboard_update.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_dashboards_list.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_delete.Rd | 8 salesforcer-0.2.2/salesforcer/man/sf_delete_attachment.Rd |only salesforcer-0.2.2/salesforcer/man/sf_delete_metadata.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_delete_report.Rd | 24 salesforcer-0.2.2/salesforcer/man/sf_delete_report_instance.Rd | 14 salesforcer-0.2.2/salesforcer/man/sf_describe_metadata.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_describe_object_fields.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_describe_objects.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_describe_report.Rd | 25 salesforcer-0.2.2/salesforcer/man/sf_describe_report_type.Rd | 24 salesforcer-0.2.2/salesforcer/man/sf_download_attachment.Rd | 60 salesforcer-0.2.2/salesforcer/man/sf_empty_recycle_bin.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_end_job_bulk.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_execute_report.Rd | 33 salesforcer-0.2.2/salesforcer/man/sf_find_duplicates.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_find_duplicates_by_id.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_format_date.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_format_datetime.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_format_time.data.frame.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_format_time.list.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_get_dashboard_data.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_get_deleted.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_get_job_bulk.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_get_job_records_bulk.Rd | 8 salesforcer-0.2.2/salesforcer/man/sf_get_report_instance_results.Rd | 18 salesforcer-0.2.2/salesforcer/man/sf_get_updated.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_input_data_validation.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_list_api_limits.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_list_metadata.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_list_objects.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_list_report_fields.Rd | 24 salesforcer-0.2.2/salesforcer/man/sf_list_report_filter_operators.Rd | 25 salesforcer-0.2.2/salesforcer/man/sf_list_report_instances.Rd | 15 salesforcer-0.2.2/salesforcer/man/sf_list_report_types.Rd | 24 salesforcer-0.2.2/salesforcer/man/sf_list_reports.Rd | 52 salesforcer-0.2.2/salesforcer/man/sf_list_resources.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_list_rest_api_versions.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_merge.Rd | 6 salesforcer-0.2.2/salesforcer/man/sf_query.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_query_report.Rd | 25 salesforcer-0.2.2/salesforcer/man/sf_read_metadata.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_rename_metadata.Rd | 6 salesforcer-0.2.2/salesforcer/man/sf_report_folder_children.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_create.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_delete.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_describe.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_share_delete.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_share_describe.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_share_recipients.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_share_update.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_shares_add.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_shares_list.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_shares_update.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folder_update.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_report_folders_list.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_reset_password.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_rest_list.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_retrieve.Rd | 8 salesforcer-0.2.2/salesforcer/man/sf_retrieve_metadata.Rd | 6 salesforcer-0.2.2/salesforcer/man/sf_retrieve_metadata_check_status.Rd | 6 salesforcer-0.2.2/salesforcer/man/sf_run_bulk_operation.Rd | 6 salesforcer-0.2.2/salesforcer/man/sf_run_bulk_query.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_run_report.Rd | 33 salesforcer-0.2.2/salesforcer/man/sf_search.Rd | 6 salesforcer-0.2.2/salesforcer/man/sf_server_timestamp.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_session_id.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_set_password.Rd | 6 salesforcer-0.2.2/salesforcer/man/sf_undelete.Rd | 2 salesforcer-0.2.2/salesforcer/man/sf_update.Rd | 8 salesforcer-0.2.2/salesforcer/man/sf_update_attachment.Rd |only salesforcer-0.2.2/salesforcer/man/sf_update_attachment_bulk_v1.Rd |only salesforcer-0.2.2/salesforcer/man/sf_update_attachment_rest.Rd |only salesforcer-0.2.2/salesforcer/man/sf_update_attachment_soap.Rd |only salesforcer-0.2.2/salesforcer/man/sf_update_metadata.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_update_report.Rd | 24 salesforcer-0.2.2/salesforcer/man/sf_upsert.Rd | 8 salesforcer-0.2.2/salesforcer/man/sf_upsert_metadata.Rd | 4 salesforcer-0.2.2/salesforcer/man/sf_user_info.Rd | 2 salesforcer-0.2.2/salesforcer/man/stop_w_errors_listed.Rd | 2 salesforcer-0.2.2/salesforcer/man/unbox_list_elements.Rd |only salesforcer-0.2.2/salesforcer/man/unbox_list_elements_recursively.Rd |only salesforcer-0.2.2/salesforcer/man/warn_w_errors_listed.Rd | 2 salesforcer-0.2.2/salesforcer/tests/testthat/test-bulk.R | 44 salesforcer-0.2.2/salesforcer/tests/testthat/test-query.R | 2 salesforcer-0.2.2/salesforcer/tests/testthat/test-report.R | 7 salesforcer-0.2.2/salesforcer/tests/testthat/test-rest.R | 76 salesforcer-0.2.2/salesforcer/tests/testthat/test-search.R | 21 salesforcer-0.2.2/salesforcer/tests/testthat/test-soap.R | 74 salesforcer-0.2.2/salesforcer/tests/testthat/test-utils.R | 8 salesforcer-0.2.2/salesforcer/vignettes/getting-started.Rmd | 43 salesforcer-0.2.2/salesforcer/vignettes/passing-control-args.Rmd | 60 salesforcer-0.2.2/salesforcer/vignettes/supported-queries.Rmd | 28 salesforcer-0.2.2/salesforcer/vignettes/supported-queries_files/figure-html/run-performance-test-1.png |binary salesforcer-0.2.2/salesforcer/vignettes/transitioning-from-RForcecom.Rmd | 42 salesforcer-0.2.2/salesforcer/vignettes/working-with-attachments.Rmd | 90 salesforcer-0.2.2/salesforcer/vignettes/working-with-bulk-apis.Rmd | 5 salesforcer-0.2.2/salesforcer/vignettes/working-with-metadata.Rmd | 4 salesforcer-0.2.2/salesforcer/vignettes/working-with-reports.Rmd | 18 222 files changed, 4457 insertions(+), 5422 deletions(-)
Title: 2-Stage Preference Trial Design and Analysis
Description: Design and analyze two-stage randomized trials with a continuous
outcome measure. The package contains functions to compute the required
sample size needed to detect a given preference, treatment, and selection
effect; alternatively, the package contains functions that can report the
study power given a fixed sample size. Finally, analysis functions are
provided to test each effect using either summary data (i.e. means,
variances) or raw study data <doi:10.18637/jss.v094.c02>.
Author: Briana Cameron [aut, cph],
Denise Esserman [ctb],
Michael Kane [cre, ctb] (<https://orcid.org/0000-0003-1899-6662>)
Maintainer: Michael Kane <michael.kane@yale.edu>
Diff between preference versions 1.1.3 dated 2020-06-19 and 1.1.6 dated 2020-09-09
DESCRIPTION | 10 +++++----- MD5 | 27 ++++++++++++++------------- R/analyze-preference-data.r | 4 ++-- R/preference-trial.r | 4 ++-- R/preference.r | 12 ++++++------ R/sample-size.r | 12 ++++++------ inst |only man/effects_from_means.Rd | 2 +- man/fit_preference_summary.Rd | 4 ++-- man/imap.Rd | 2 +- man/optimal_proportion.Rd | 2 +- man/overall_power.Rd | 4 ++-- man/overall_sample_size.Rd | 4 ++-- man/preference-package.Rd | 10 +++++----- man/preference.trial.Rd | 4 ++-- 15 files changed, 51 insertions(+), 50 deletions(-)
Title: Policy Learning via Doubly Robust Empirical Welfare Maximization
over Trees
Description: Learn optimal policies via doubly robust empirical
welfare maximization over trees. This package implements the multi-action doubly
robust approach of Zhou, Athey and Wager (2018) <arXiv:1810.04778> in the case where
we want to learn policies that belong to the class of depth k decision trees.
Author: Zhengyuan Zhou [aut],
Susan Athey [aut],
Stefan Wager [aut],
Ayush Kanodia [aut],
Erik Sverdrup [cre]
Maintainer: Erik Sverdrup <erikcs@stanford.edu>
Diff between policytree versions 1.0.1 dated 2020-07-13 and 1.0.2 dated 2020-09-09
policytree-1.0.1/policytree/man/find_leaf_node.Rd |only policytree-1.0.2/policytree/DESCRIPTION | 8 policytree-1.0.2/policytree/MD5 | 21 -- policytree-1.0.2/policytree/R/RcppExports.R | 4 policytree-1.0.2/policytree/R/multi_causal_forest.R | 2 policytree-1.0.2/policytree/R/policy_tree.R | 102 +++++----- policytree-1.0.2/policytree/man/multi_causal_forest.Rd | 1 policytree-1.0.2/policytree/man/policy_tree.Rd | 41 +++- policytree-1.0.2/policytree/man/predict.multi_causal_forest.Rd | 1 policytree-1.0.2/policytree/man/predict.policy_tree.Rd | 28 +- policytree-1.0.2/policytree/src/RcppExports.cpp | 13 + policytree-1.0.2/policytree/src/Rcppbindings.cpp | 64 +++++- 12 files changed, 204 insertions(+), 81 deletions(-)
Title: Interactive Parallel Categories Diagrams for 'easyalluvial'
Description: Complex graphical representations of data are best explored using interactive elements.
'parcats' adds interactive graphing capabilities to the 'easyalluvial' package.
The 'plotly.js' parallel categories diagrams offer a good framework for
creating interactive flow graphs that allow manual drag and drop sorting of dimensions
and categories, highlighting single flows and displaying mouse over information. The
'plotly.js' dependency is quite heavy and therefore is outsourced into a separate package.
Author: Bjoern Koneswarakantha [aut, cre]
(<https://orcid.org/0000-0003-4585-7799>)
Maintainer: Bjoern Koneswarakantha <datistics@gmail.com>
Diff between parcats versions 0.0.1 dated 2019-12-02 and 0.0.2 dated 2020-09-09
DESCRIPTION | 8 MD5 | 165 +++++----- NEWS.md | 4 R/parcats.R | 5 README.md | 26 - inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-af.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-am.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ar-dz.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ar-eg.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ar.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-az.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-bg.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-bs.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ca.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-cs.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-cy.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-da.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-de-ch.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-de.js | 2 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inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-hi-in.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-hr.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-hu.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-hy.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-id.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-is.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-it.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ja.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ka.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-km.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ko.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-lt.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-lv.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-me-me.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-me.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-mk.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ml.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ms.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-mt.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-nl-be.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-nl.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-no.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-pa.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-pl.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-pt-br.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-pt-pt.js |only inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-rm.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ro.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ru.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-sk.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-sl.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-sq.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-sr-sr.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-sr.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-sv.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-sw.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ta.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-th.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-tr.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-tt.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-uk.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-ur.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-vi.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-zh-cn.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-zh-hk.js | 2 inst/htmlwidgets/lib/plotly.js/locales/plotly-locale-zh-tw.js | 2 inst/htmlwidgets/lib/plotly.js/plotly.min.js | 60 +++ man/figures/demo1.gif |only man/figures/demo2.gif |only man/figures/logo.png |binary man/parcats.Rd | 3 85 files changed, 243 insertions(+), 176 deletions(-)
Title: Koul's Minimum Distance Estimation in Regression and Image
Segmentation Problems
Description: Many methods are developed to deal with two major statistical problems: image segmentation
and nonparametric estimation in various regression models. Image segmentation is nowadays
gaining a lot of attention from various scientific subfields. Especially, image segmentation
has been popular in medical research such as magnetic resonance imaging (MRI) analysis. When
a patient suffers from some brain diseases such as dementia and Parkinson's disease,
those diseases can be easily diagnosed in brain MRI: the area affected by those diseases is
brightly expressed in MRI, which is called a white lesion. For the purpose of medical research,
locating and segment those white lesions in MRI is a critical issue; it can be done
manually. However, manual segmentation is very expensive in that it is error-prone and demands a huge
amount of time. Therefore, supervised machine learning has emerged as an alternative solution.
Despite its powerful performance in a classification problem such as hand-written digits, supervised
machine learning has not shown the same satisfactory result in MRI analysis. Setting aside all issues
of the supervised machine learning, it exposed a critical problem when employed for MRI analysis: it
requires time-consuming data labeling. Thus, there is a strong demand for an unsupervised approach,
and this package - based on Hira L. Koul (1986) <DOI:10.1214/aos/1176350059> - proposes an efficient
method for simple image segmentation - here, "simple" means that an image is black-and-white - which
can easily be applied to MRI analysis. This package includes a function GetSegImage(): when a black-and-white
image is given as an input, GetSegImage() separates an area of white pixels - which corresponds to
a white lesion in MRI - from the given image. For the second problem, consider linear regression model and autoregressive model of
order q where errors in the linear regression model and innovations in the
autoregression model are independent and symmetrically distributed. Hira L. Koul
(1986) <DOI:10.1214/aos/1176350059> proposed a nonparametric minimum distance
estimation method by minimizing L2-type distance between certain weighted
residual empirical processes. He also proposed a simpler version of the loss
function by using symmetry of the integrating measure in the distance. Kim
(2018) <DOI:10.1080/00949655.2017.1392527> proposed a fast computational method
which enables practitioners to compute the minimum distance estimator of the vector
of general multiple regression parameters for several integrating measures. This
package contains three functions: KoulLrMde(), KoulArMde(), and Koul2StageMde().
The former two provide minimum distance estimators for linear regression model
and autoregression model, respectively, where both are based on Koul's method.
These two functions take much less time for the computation than those based
on parametric minimum distance estimation methods. Koul2StageMde() provides
estimators for regression and autoregressive coefficients of linear regression
model with autoregressive errors through minimum distant method of two stages.
The new version is written in Rcpp and dramatically reduces computational time.
Author: Jiwoong Kim <jwboys26 at gmail.com>
Maintainer: Jiwoong Kim <jwboys26@gmail.com>
Diff between KoulMde versions 3.1.1 dated 2020-04-11 and 3.2.0 dated 2020-09-09
DESCRIPTION | 34 ++++++++++++++++++++++++++-------- MD5 | 22 ++++++++++++++-------- NAMESPACE | 5 +++-- R/ImgSeg.R |only R/MdeFunc31.R | 19 ++++++++++--------- R/RFuncLib.R |only R/RcppExports.R | 5 +++++ man/GenImg.Rd |only man/GetSegImage.Rd |only man/Koul2StageMde.Rd | 8 +++++--- man/KoulArMde.Rd | 8 +++++--- src/FuncLib2.cpp |only src/Makevars |only src/Makevars.win | 15 ++++++++++++++- src/RcppExports.cpp | 14 ++++++++++++++ 15 files changed, 96 insertions(+), 34 deletions(-)
Title: Shrinkage for Effect Estimation
Description: Computes shrinkage estimators for regression problems. Selects
penalty parameter by minimizing bias and variance in the effect estimate, where bias and variance are estimated from the posterior predictive distribution. See Keller and Rice (2017) <doi:10.1093/aje/kwx225> for more details.
Author: Joshua Keller
Maintainer: Joshua Keller <joshua.keller@colostate.edu>
Diff between eshrink versions 0.1.0 dated 2017-04-06 and 0.1.2 dated 2020-09-09
DESCRIPTION | 12 ++++++------ MD5 | 19 +++++++++++-------- R/eshrink.R |only README.md |only man/check_CIbound.Rd | 42 +++++++++++++++++++++++++++++++----------- man/eshrink-package.Rd |only man/estRidge.Rd | 7 +++---- man/festRidge.Rd | 44 ++++++++++++++++++++++++++++++++++---------- man/mseRidge.Rd | 3 +-- man/samplePosterior.Rd | 14 +++++++++++--- man/simLASSO.Rd | 1 - man/vcovfestRidge.Rd | 19 +++++++++++++------ 12 files changed, 110 insertions(+), 51 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-26 1.0.0
Title: Miscellaneous Functions by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brüggemann [ctb] (<https://orcid.org/0000-0002-5329-5987>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.16 dated 2020-07-24 and 0.17 dated 2020-09-09
DESCRIPTION | 8 ++--- LICENSE | 2 - MD5 | 21 +++++++-------- NAMESPACE | 1 NEWS.md | 8 +++++ R/packages.R | 19 +++++++++---- R/revcheck.R | 9 +++--- R/string.R | 72 ++++++++++++++++++++++++++++++++++++++++++++++++++++ inst/doc/xfun.html | 12 ++++---- man/pkg_attach.Rd | 10 +++++-- man/rev_check.Rd | 4 +- man/split_source.Rd |only 12 files changed, 130 insertions(+), 36 deletions(-)
Title: Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum
Likelihood Estimation
Description: Run mixed-effects models that include weights at every level. The WeMix package fits a weighted mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. Both linear and logit models are supported. Models may have up to three levels.
Author: Paul Bailey [aut, cre], Claire Kelley [aut], Trang Nguyen [aut], Huade Huo [aut], Christian Kjeldsen [ctb] (tests with TIMSS data).
Maintainer: Paul Bailey <pbailey@air.org>
Diff between WeMix versions 3.1.4 dated 2020-05-21 and 3.1.5 dated 2020-09-09
DESCRIPTION | 10 +-- MD5 | 16 ++--- R/adaptiveQuad.R | 4 - R/analyticSolve.R | 15 ++++- build/vignette.rds |binary inst/NEWS.Rd | 12 +++- inst/doc/Introduction_to_Mixed_Effects_Models_With_WeMix.pdf |binary inst/doc/Weighted_Linear_Mixed_Effects_Models.pdf |binary tests/testthat/test-1-main.R | 31 +++++------ 9 files changed, 56 insertions(+), 32 deletions(-)
Title: Scatter Pie Plot
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scatterpie versions 0.1.4 dated 2019-11-08 and 0.1.5 dated 2020-09-09
DESCRIPTION | 10 +- MD5 | 18 ++--- NEWS | 7 ++ R/geom_scatterpie.R | 27 +++++--- build/vignette.rds |binary inst/doc/scatterpie.R | 14 ++-- inst/doc/scatterpie.Rmd | 7 +- inst/doc/scatterpie.html | 157 +++++++++++++++++++++++++++++------------------ man/geom_scatterpie.Rd | 18 ++++- vignettes/scatterpie.Rmd | 7 +- 10 files changed, 168 insertions(+), 97 deletions(-)
Title: Testing Linear Regression Models
Description: A collection of tests, data sets, and examples
for diagnostic checking in linear regression models. Furthermore,
some generic tools for inference in parametric models are provided.
Author: Torsten Hothorn [aut] (<https://orcid.org/0000-0001-8301-0471>),
Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Richard W. Farebrother [aut] (pan.f),
Clint Cummins [aut] (pan.f),
Giovanni Millo [ctb],
David Mitchell [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between lmtest versions 0.9-37 dated 2019-04-30 and 0.9-38 dated 2020-09-09
DESCRIPTION | 8 ++--- MD5 | 52 ++++++++++++++++++------------------- NAMESPACE | 3 ++ NEWS | 20 ++++++++++++++ R/coeftest.R | 34 ++++++++++++++++++++++-- R/waldtest.R | 17 ++++++++++-- build/vignette.rds |binary data/ChickEgg.rda |binary data/Mandible.rda |binary data/USDistLag.rda |binary data/bondyield.rda |binary data/currencysubstitution.rda |binary data/ftemp.rda |binary data/fyff.rda |binary data/gmdc.rda |binary data/growthofmoney.rda |binary data/ip.rda |binary data/jocci.rda |binary data/lhur.rda |binary data/moneydemand.rda |binary data/pw561.rda |binary data/unemployment.rda |binary data/valueofstocks.rda |binary data/wages.rda |binary inst/doc/lmtest-intro.pdf |binary man/coeftest.Rd | 41 ++++++++++++++++++++++++++--- tests/Examples/lmtest-Ex.Rout.save | 29 +++++++++++++++++--- 27 files changed, 160 insertions(+), 44 deletions(-)
Title: Data for "Forecasting: Principles and Practice" (2nd Edition)
Description: All data sets required for the examples and exercises
in the book "Forecasting: principles and practice" (2nd ed, 2018)
by Rob J Hyndman and George Athanasopoulos <https://otexts.com/fpp2/>.
All packages required to run the examples are also loaded.
Author: Rob Hyndman [aut, cre, cph],
RStudio [cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between fpp2 versions 2.3 dated 2018-04-13 and 2.4 dated 2020-09-09
fpp2-2.3/fpp2/R/fpp-package.R |only fpp2-2.3/fpp2/man/fpp-package.Rd |only fpp2-2.4/fpp2/DESCRIPTION | 43 ++++++++++------ fpp2-2.4/fpp2/MD5 | 95 +++++++++++++++++++----------------- fpp2-2.4/fpp2/NAMESPACE | 4 + fpp2-2.4/fpp2/NEWS.md | 8 ++- fpp2-2.4/fpp2/R/attach.R |only fpp2-2.4/fpp2/R/conflicts.R |only fpp2-2.4/fpp2/R/data.R |only fpp2-2.4/fpp2/R/fpp2.R |only fpp2-2.4/fpp2/R/utils.R |only fpp2-2.4/fpp2/R/zzz.R |only fpp2-2.4/fpp2/README.md | 63 ++++++++++++++++++----- fpp2-2.4/fpp2/data/calls.rda |binary fpp2-2.4/fpp2/data/elecdaily.rda |binary fpp2-2.4/fpp2/data/elecdemand.rda |binary fpp2-2.4/fpp2/man/a10.Rd | 15 +++-- fpp2-2.4/fpp2/man/arrivals.Rd | 6 +- fpp2-2.4/fpp2/man/ausair.Rd | 8 +-- fpp2-2.4/fpp2/man/ausbeer.Rd | 6 +- fpp2-2.4/fpp2/man/auscafe.Rd | 6 +- fpp2-2.4/fpp2/man/austa.Rd | 6 +- fpp2-2.4/fpp2/man/austourists.Rd | 6 +- fpp2-2.4/fpp2/man/calls.Rd | 10 ++- fpp2-2.4/fpp2/man/debitcards.Rd | 8 +-- fpp2-2.4/fpp2/man/departures.Rd | 8 +-- fpp2-2.4/fpp2/man/elecdemand.Rd | 18 ++++-- fpp2-2.4/fpp2/man/elecequip.Rd | 8 +-- fpp2-2.4/fpp2/man/elecsales.Rd | 6 +- fpp2-2.4/fpp2/man/euretail.Rd | 8 +-- fpp2-2.4/fpp2/man/fpp2-package.Rd |only fpp2-2.4/fpp2/man/fpp2_conflicts.Rd |only fpp2-2.4/fpp2/man/fpp2_packages.Rd |only fpp2-2.4/fpp2/man/gasoline.Rd | 6 +- fpp2-2.4/fpp2/man/goog.Rd | 10 ++- fpp2-2.4/fpp2/man/guinearice.Rd | 8 +-- fpp2-2.4/fpp2/man/h02.Rd | 15 +++-- fpp2-2.4/fpp2/man/hyndsight.Rd | 8 +-- fpp2-2.4/fpp2/man/insurance.Rd | 6 +- fpp2-2.4/fpp2/man/livestock.Rd | 8 +-- fpp2-2.4/fpp2/man/marathon.Rd | 8 +-- fpp2-2.4/fpp2/man/maxtemp.Rd | 6 +- fpp2-2.4/fpp2/man/melsyd.Rd | 6 +- fpp2-2.4/fpp2/man/mens400.Rd | 6 +- fpp2-2.4/fpp2/man/oil.Rd | 8 +-- fpp2-2.4/fpp2/man/prison.Rd | 11 ++-- fpp2-2.4/fpp2/man/qauselec.Rd | 6 +- fpp2-2.4/fpp2/man/qcement.Rd | 6 +- fpp2-2.4/fpp2/man/qgas.Rd | 6 +- fpp2-2.4/fpp2/man/sunspotarea.Rd | 6 +- fpp2-2.4/fpp2/man/uschange.Rd | 9 +-- fpp2-2.4/fpp2/man/usmelec.Rd | 8 +-- fpp2-2.4/fpp2/man/visnights.Rd | 10 ++- fpp2-2.4/fpp2/man/wmurders.Rd | 8 +-- 54 files changed, 319 insertions(+), 178 deletions(-)
Title: Bayesian Logistic Regression with Heavy-Tailed Priors
Description: Efficient Bayesian multinomial logistic regression based on heavy-tailed
(hyper-LASSO, non-convex) priors. The posterior of coefficients and hyper-parameters
is sampled with restricted Gibbs sampling for leveraging the high-dimensionality and
Hamiltonian Monte Carlo for handling the high-correlation among coefficients. A detailed
description of the method: Li and Yao (2018),
Journal of Statistical Computation and Simulation, 88:14, 2827-2851, <arXiv:1405.3319>.
Author: Longhai Li [aut, cre] (<https://orcid.org/0000-0002-3074-8584>),
Steven Liu [aut]
Maintainer: Longhai Li <longhai@math.usask.ca>
Diff between HTLR versions 0.4-2 dated 2020-01-17 and 0.4-3 dated 2020-09-09
HTLR-0.4-2/HTLR/R/bplrhmc.r |only HTLR-0.4-2/HTLR/R/fsel.r |only HTLR-0.4-3/HTLR/DESCRIPTION | 8 HTLR-0.4-3/HTLR/MD5 | 69 ++++---- HTLR-0.4-3/HTLR/NAMESPACE | 3 HTLR-0.4-3/HTLR/NEWS.md | 14 + HTLR-0.4-3/HTLR/R/RcppExports.R | 4 HTLR-0.4-3/HTLR/R/core.r |only HTLR-0.4-3/HTLR/R/htlr.R | 15 + HTLR-0.4-3/HTLR/R/initial-state.R |only HTLR-0.4-3/HTLR/R/lassorda.r | 2 HTLR-0.4-3/HTLR/R/mccoef.r | 221 ++++++++++++++------------ HTLR-0.4-3/HTLR/R/order.r |only HTLR-0.4-3/HTLR/R/predict.R | 20 +- HTLR-0.4-3/HTLR/R/util.r | 15 - HTLR-0.4-3/HTLR/README.md | 14 - HTLR-0.4-3/HTLR/inst/doc/simu.R | 31 +-- HTLR-0.4-3/HTLR/inst/doc/simu.Rmd | 7 HTLR-0.4-3/HTLR/inst/doc/simu.html | 121 +++++++------- HTLR-0.4-3/HTLR/man/as.matrix.htlr.fit.Rd | 4 HTLR-0.4-3/HTLR/man/colon.Rd | 6 HTLR-0.4-3/HTLR/man/diabetes392.Rd | 6 HTLR-0.4-3/HTLR/man/htlr.Rd | 9 - HTLR-0.4-3/HTLR/man/htlr_fit.Rd | 11 - HTLR-0.4-3/HTLR/man/htlr_predict.Rd | 8 HTLR-0.4-3/HTLR/man/htlr_prior.Rd | 5 HTLR-0.4-3/HTLR/man/lasso_deltas.Rd | 2 HTLR-0.4-3/HTLR/man/order_ftest.Rd |only HTLR-0.4-3/HTLR/man/order_kruskal.Rd |only HTLR-0.4-3/HTLR/man/order_plain.Rd |only HTLR-0.4-3/HTLR/man/summary.htlr.fit.Rd | 8 HTLR-0.4-3/HTLR/src/RcppExports.cpp | 9 - HTLR-0.4-3/HTLR/src/gibbs.cpp | 54 +++--- HTLR-0.4-3/HTLR/src/gibbs.h | 7 HTLR-0.4-3/HTLR/src/main.cpp | 28 +-- HTLR-0.4-3/HTLR/src/utils.cpp | 2 HTLR-0.4-3/HTLR/tests/testthat/test-bplrhmc.r | 36 ++-- HTLR-0.4-3/HTLR/tests/testthat/test-gendata.r | 2 HTLR-0.4-3/HTLR/tests/testthat/test-warmup.R |only HTLR-0.4-3/HTLR/vignettes/simu.Rmd | 7 40 files changed, 411 insertions(+), 337 deletions(-)