Title: Visual Regression Testing and Graphical Diffing
Description: An extension to the 'testthat' package that makes it easy
to add graphical unit tests. It provides a Shiny application to
manage the test cases.
Author: Lionel Henry [cre, aut],
RStudio [cph],
Carl Sutherland [aut] (jg-imagediff library),
Humble Software [cph] (jg-imagediff library),
David Hong [aut] (TwoFace library),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery-authors.txt),
T Jake Luciani [aut] (svglite),
Matthieu Decorde [aut] (svglite),
Vaudor Lise [aut] (svglite),
Tony Plate [ctb] (svglite: Early line dashing code),
David Gohel [ctb] (svglite: Line dashing code and raster code),
Yixuan Qiu [ctb] (svglite: Improved styles; polypath implementation),
Håkon Malmedal [ctb] (svglite: Opacity code)
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between vdiffr versions 0.3.2.2 dated 2020-07-07 and 0.3.3 dated 2020-10-06
DESCRIPTION | 8 +-- MD5 | 18 +++---- NEWS.md | 6 ++ R/svg.R | 2 R/utils.R | 4 + README.md | 3 - man/write_svg.Rd | 4 - src/devSVG.cpp | 4 - tests/mock.Rout.fail | 104 ++++++++++++++++++++------------------------ tests/testthat/setup-mock.R | 6 ++ 10 files changed, 82 insertions(+), 77 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for
temporal data in an data- and model-oriented format. The 'tsibble'
provides tools to easily manipulate and analyse temporal data, such as
filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>),
Tyler Smith [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.9.2 dated 2020-07-24 and 0.9.3 dated 2020-10-06
tsibble-0.9.2/tsibble/man/future-slide.Rd |only tsibble-0.9.2/tsibble/man/future-stretch.Rd |only tsibble-0.9.2/tsibble/man/future-tile.Rd |only tsibble-0.9.3/tsibble/DESCRIPTION | 21 +- tsibble-0.9.3/tsibble/MD5 | 83 +++++----- tsibble-0.9.3/tsibble/NAMESPACE | 2 tsibble-0.9.3/tsibble/NEWS.md | 7 tsibble-0.9.3/tsibble/R/as-tsibble.R | 13 - tsibble-0.9.3/tsibble/R/deprec-slide.R | 156 -------------------- tsibble-0.9.3/tsibble/R/deprec-stretch.R | 93 ----------- tsibble-0.9.3/tsibble/R/deprec-tile.R | 85 ---------- tsibble-0.9.3/tsibble/R/dplyr-verbs.R | 21 +- tsibble-0.9.3/tsibble/R/scales.R | 115 +++++++++++--- tsibble-0.9.3/tsibble/R/tsibble-meta.R | 13 + tsibble-0.9.3/tsibble/R/yearmonth.R | 1 tsibble-0.9.3/tsibble/R/yearquarter.R | 3 tsibble-0.9.3/tsibble/R/yearweek.R | 1 tsibble-0.9.3/tsibble/README.md | 151 +++++++++---------- tsibble-0.9.3/tsibble/build/tsibble.pdf |binary tsibble-0.9.3/tsibble/inst/CITATION | 7 tsibble-0.9.3/tsibble/inst/doc/intro-tsibble.Rmd | 2 tsibble-0.9.3/tsibble/inst/doc/intro-tsibble.html | 2 tsibble-0.9.3/tsibble/man/group_by_key.Rd | 5 tsibble-0.9.3/tsibble/man/key-data.Rd | 15 + tsibble-0.9.3/tsibble/man/partial-slider.Rd | 5 tsibble-0.9.3/tsibble/man/slide.Rd | 12 - tsibble-0.9.3/tsibble/man/slide2.Rd | 64 -------- tsibble-0.9.3/tsibble/man/slider.Rd | 13 - tsibble-0.9.3/tsibble/man/stretch.Rd | 11 - tsibble-0.9.3/tsibble/man/stretch2.Rd | 27 --- tsibble-0.9.3/tsibble/man/stretcher.Rd | 12 - tsibble-0.9.3/tsibble/man/tile.Rd | 12 - tsibble-0.9.3/tsibble/man/tile2.Rd | 16 -- tsibble-0.9.3/tsibble/man/tiler.Rd | 14 - tsibble-0.9.3/tsibble/man/tsibble-package.Rd | 5 tsibble-0.9.3/tsibble/man/tsibble-scales.Rd | 31 --- tsibble-0.9.3/tsibble/man/tsibble-tidyverse.Rd | 4 tsibble-0.9.3/tsibble/man/update_tsibble.Rd | 2 tsibble-0.9.3/tsibble/man/year-month.Rd | 2 tsibble-0.9.3/tsibble/man/year-quarter.Rd | 2 tsibble-0.9.3/tsibble/man/year-week.Rd | 2 tsibble-0.9.3/tsibble/tests/testthat/test-indexby.R | 28 --- tsibble-0.9.3/tsibble/tests/testthat/test-tsibble.R | 6 tsibble-0.9.3/tsibble/vignettes/intro-tsibble.Rmd | 2 44 files changed, 323 insertions(+), 743 deletions(-)
Title: Calibration and Analysis of Radiocarbon Dates
Description: Enables the calibration and analysis of radiocarbon dates, often but not exclusively for the purposes of archaeological research. It includes functions not only for basic calibration, uncalibration, and plotting of one or more dates, but also a statistical framework for building demographic and related longitudinal inferences from aggregate radiocarbon date lists, including: Monte-Carlo simulation test (Timpson et al 2014 <doi:10.1016/j.jas.2014.08.011>), random mark permutation test (Crema et al 2016 <doi:10.1371/journal.pone.0154809>) and spatial permutation tests (Crema, Bevan, and Shennan 2017 <doi:10.1016/j.jas.2017.09.007>).
Author: Andrew Bevan [aut] (<https://orcid.org/0000-0001-7967-3117>),
Enrico Crema [aut, cre] (<https://orcid.org/0000-0001-6727-5138>),
R. Kyle Bocinsky [ctb],
Martin Hinz [ctb],
Philip Riris [ctb],
Fabio Silva [ctb]
Maintainer: Enrico Crema <enrico.crema@gmail.com>
Diff between rcarbon versions 1.4.0 dated 2020-08-25 and 1.4.1 dated 2020-10-06
DESCRIPTION | 16 MD5 | 27 - NAMESPACE | 1 R/calibration-helpers.R | 15 R/calibration.R | 82 ++-- R/plots.R | 56 +- R/utilities.R | 59 ++ inst/CITATION | 20 - inst/doc/rcarbon.Rmd | 44 +- inst/doc/rcarbon.html | 953 +++++++++++++++++++++++++++++++++++++++++++++--- man/hpdi.Rd | 2 man/multiplot.Rd | 5 man/spd2rc.Rd | 2 man/transformSPD.Rd |only vignettes/rcarbon.Rmd | 44 +- 15 files changed, 1173 insertions(+), 153 deletions(-)
Title: Utilities for 'Glmnet'
Description: Provides a formula interface for the 'glmnet' package for
elasticnet regression, a method for cross-validating the alpha parameter,
and other quality-of-life tools.
Author: Microsoft [cph],
Hong Ooi [aut, cre]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between glmnetUtils versions 1.1.5 dated 2020-03-12 and 1.1.6 dated 2020-10-06
DESCRIPTION | 19 +++++++++----- MD5 | 20 +++++++-------- NEWS.md | 4 +++ README.md | 4 +-- build/vignette.rds |binary inst/doc/intro.html | 30 +++++++++++++---------- inst/doc/intro.rmd | 6 ++-- man/cv.glmnet.Rd | 30 +++++++++++++++-------- man/cva.glmnet.Rd | 67 +++++++++++++++++++++++++++++++++++++--------------- man/glmnet.Rd | 45 ++++++++++++++++++++++++---------- vignettes/intro.rmd | 6 ++-- 11 files changed, 150 insertions(+), 81 deletions(-)
Title: Computerized Adaptive Testing for Survey Research
Description: Provides methods of computerized adaptive testing for survey researchers. See Montgomery and Rossiter (2019) <doi:10.1093/jssam/smz027>. Includes functionality for data fit with the classic item response methods including the latent trait model, Birnbaum`s three parameter model, the graded response, and the generalized partial credit model. Additionally, includes several ability parameter estimation and item selection routines. During item selection, all calculations are done in compiled C++ code.
Author: Jacob Montgomery [aut],
Erin Rossiter [aut, cre]
Maintainer: Erin Rossiter <erinrossiter@wustl.edu>
Diff between catSurv versions 1.2.0 dated 2019-12-09 and 1.3.0 dated 2020-10-06
DESCRIPTION | 8 - MD5 | 154 ++++++++++++++++---------------- NEWS.md | 15 +++ R/Cat-class.R | 10 +- R/RcppExports.R | 17 ++- R/oracle.R | 31 ++++-- R/readQualtrics.R | 1 data/agree_cat.rda |binary data/consc_cat.rda |binary data/empathy_cat.rda |binary data/extra_cat.rda |binary data/gpcm_cat.rda |binary data/grm_cat.rda |binary data/ltm_cat.rda |binary data/mach_cat.rda |binary data/neuro_cat.rda |binary data/nfa_cat.rda |binary data/nfc_cat.rda |binary data/npi_cat.rda |binary data/nte_cat.rda |binary data/open_cat.rda |binary data/rwa_cat.rda |binary data/sdo_cat.rda |binary data/sv_conservation_cat.rda |binary data/sv_open_cat.rda |binary data/sv_selfenhance_cat.rda |binary data/sv_selftransc_cat.rda |binary data/systemizing_cat.rda |binary data/tpm_cat.rda |binary man/Cat.Rd | 6 - man/agree_cat.Rd | 4 man/consc_cat.Rd | 4 man/empathy_cat.Rd | 4 man/ex_qualtrics_results.Rd | 4 man/ex_qualtrics_results_multiple.Rd | 4 man/expectedKL.Rd | 2 man/expectedObsInf.Rd | 3 man/extra_cat.Rd | 4 man/gpcm_cat.Rd | 4 man/grm_cat.Rd | 4 man/likelihood.Rd | 1 man/ltm_cat.Rd | 4 man/mach_cat.Rd | 4 man/neuro_cat.Rd | 4 man/nfa_cat.Rd | 4 man/nfc.Rd | 6 - man/nfc_cat.Rd | 4 man/npi.Rd | 6 - man/npi_battery.Rd | 4 man/npi_cat.Rd | 4 man/nte.Rd | 4 man/nte_cat.Rd | 4 man/open_cat.Rd | 4 man/oracle.Rd | 6 + man/polknowMT.Rd | 6 - man/polknowOrdered.Rd | 6 - man/polknowTAPS.Rd | 6 - man/readQualtrics.Rd | 1 man/rwa_cat.Rd | 4 man/sdo_cat.Rd | 4 man/selectItem.Rd | 11 +- man/sv_conservation_cat.Rd | 4 man/sv_open_cat.Rd | 4 man/sv_selfenhance_cat.Rd | 4 man/sv_selftransc_cat.Rd | 4 man/systemizing_cat.Rd | 4 man/tpm_cat.Rd | 4 src/Cat.cpp | 6 - src/Estimator.cpp | 44 +++++---- src/MAPEstimator.cpp | 12 ++ src/Makevars | 8 + src/QuestionSet.cpp | 3 src/QuestionSet.h | 1 src/main.cpp | 17 ++- tests/testthat/test-estimateTheta-MLE.R | 2 tests/testthat/test-estimateThetas.R | 12 +- tests/testthat/test-nextItem-KL.R | 4 tests/testthat/test-nextItem-MFII.R | 4 78 files changed, 323 insertions(+), 190 deletions(-)
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.18 dated 2020-07-28 and 0.19 dated 2020-10-06
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS | 6 ++++++ R/dynamic.R | 8 ++++---- R/make.R | 2 +- R/notebook.R | 2 +- R/static.R | 2 +- README.md | 2 +- inst/examples/rmd/example.Rmd | 2 +- man/dynamic_site.Rd | 6 +++--- man/make.Rd | 2 +- man/notebook.Rd | 2 +- 12 files changed, 35 insertions(+), 29 deletions(-)
Title: Fits the Bayesian Piecewise Linear Log-Hazard Model
Description: Contains posterior samplers for the Bayesian piecewise linear log-hazard and piecewise exponential hazard models, including Cox models. Posterior mean restricted survival times are also computed for non-Cox an Cox models with only treatment indicators. The ApproxMean() function can be used to estimate restricted posterior mean survival times given a vector of patient covariates in the Cox model. Functions included to return the posterior mean hazard and survival functions for the piecewise exponential and piecewise linear log-hazard models. Chapple, AG, Peak, T, Hemal, A (2020). Under Revision.
Author: Andrew G Chapple
Maintainer: Andrew G Chapple <achapp@lsuhsc.edu>
Diff between BayesReversePLLH versions 1.3 dated 2020-02-06 and 1.4 dated 2020-10-06
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/GetALLHazLogSlope.R | 32 +++++++++++++++++--------------- R/GetALLHazPiece.R | 2 +- src/BayesReversePLLH.cpp | 4 ++++ 5 files changed, 31 insertions(+), 25 deletions(-)
More information about BayesReversePLLH at CRAN
Permanent link
Title: Food Composition Information and Dietary Assessment
Description: Provides a tool set for food information and dietary assessment. It uses food composition data from several reference databases, including: 'USDA' (United States), 'CIQUAL' (France), and 'BEDCA' (Spain). 'NutrienTrackeR' calculates the intake levels for both macronutrient and micronutrients, and compares them with the recommended dietary allowances (RDA). It includes a number of visualization tools, such as time series plots of nutrient intake, and pie-charts showing the main foods contributing to the intake level of a given nutrient.
Author: Andrea Rodriguez-Martinez, Rafael Ayala, Yacine Debbabi, Lara Selles Vidal
Maintainer: Rafael Ayala <r.ayala14@imperial.ac.uk>
Diff between NutrienTrackeR versions 0.99.2 dated 2018-06-27 and 0.99.3 dated 2020-10-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 2 ++ build/vignette.rds |binary inst/doc/NutrienTrackeR.R | 18 +++++++++--------- inst/doc/NutrienTrackeR.Rmd | 2 +- inst/doc/NutrienTrackeR.html | 23 ++++++++++++----------- vignettes/NutrienTrackeR.Rmd | 2 +- 8 files changed, 36 insertions(+), 33 deletions(-)
More information about NutrienTrackeR at CRAN
Permanent link
Title: Fit and Compare Species-Area Relationship Models Using
Multimodel Inference
Description: Implements the basic elements of the multi-model
inference paradigm for up to twenty species-area relationship models (SAR), using simple
R list-objects and functions, as in Triantis et al. 2012 <DOI:10.1111/j.1365-2699.2011.02652.x>.
The package is scalable and users can easily create their own model and data objects. Additional
SAR related functions are provided.
Author: Thomas J. Matthews [aut, cre] (<https://orcid.org/0000-0002-7624-244X>),
Francois Guilhaumon [aut] (<https://orcid.org/0000-0003-4707-8932>),
Kevin Cazelles [rev] (<https://orcid.org/0000-0001-6619-9874>)
Maintainer: Thomas J. Matthews <txm676@gmail.com>
Diff between sars versions 1.2.3 dated 2020-05-31 and 1.3.0 dated 2020-10-06
DESCRIPTION | 11 MD5 | 104 ++++---- NAMESPACE | 18 + NEWS.md | 6 R/class_plot.R | 306 ++++++++++++++++++++++++ R/class_print.R | 44 +++ R/class_summary.R | 116 +++++++++ R/coleman_plot.R | 7 R/data_aegean2.R |only R/sar_threshold.R |only README.md | 52 +++- build/vignette.rds |binary data/aegean2.rda |only inst/REFERENCES.bib | 28 +- inst/doc/sars-r-package.R | 16 + inst/doc/sars-r-package.Rmd | 53 ++++ inst/doc/sars-r-package.html | 267 ++++++++++++--------- man/aegean.Rd | 54 ++-- man/aegean2.Rd |only man/cole_sim.Rd | 48 ++- man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |only man/galap.Rd | 56 ++-- man/get_coef.Rd |only man/niering.Rd | 52 ++-- man/plot.coleman.Rd | 164 ++++++------- man/plot.multi.Rd | 350 ++++++++++++++-------------- man/plot.sars.Rd | 222 +++++++++--------- man/plot.threshold.Rd |only man/sar_asymp.Rd | 172 ++++++------- man/sar_average.Rd | 382 +++++++++++++++---------------- man/sar_betap.Rd | 172 ++++++------- man/sar_chapman.Rd | 172 ++++++------- man/sar_epm1.Rd | 172 ++++++------- man/sar_epm2.Rd | 172 ++++++------- man/sar_gompertz.Rd | 172 ++++++------- man/sar_heleg.Rd | 172 ++++++------- man/sar_koba.Rd | 172 ++++++------- man/sar_loga.Rd | 172 ++++++------- man/sar_mmf.Rd | 172 ++++++------- man/sar_monod.Rd | 172 ++++++------- man/sar_negexpo.Rd | 172 ++++++------- man/sar_p1.Rd | 172 ++++++------- man/sar_p2.Rd | 172 ++++++------- man/sar_power.Rd | 172 ++++++------- man/sar_powerR.Rd | 172 ++++++------- man/sar_pred.Rd | 130 +++++----- man/sar_ratio.Rd | 172 ++++++------- man/sar_threshold.Rd |only man/sar_weibull3.Rd | 172 ++++++------- man/sar_weibull4.Rd | 172 ++++++------- man/sars_models.Rd | 28 +- man/summary.sars.Rd | 144 ++++++----- man/threshold_ci.Rd |only tests/testthat/test_thresholds.R |only vignettes/REFERENCES.bib | 61 +++- vignettes/sars-r-package.Rmd | 53 ++++ 58 files changed, 3392 insertions(+), 2648 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <https://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb],
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 1.1.0 dated 2020-07-08 and 1.2.0 dated 2020-10-06
rnoaa-1.1.0/rnoaa/data/storm_columns.rda |only rnoaa-1.1.0/rnoaa/data/storms_names.rda |only rnoaa-1.1.0/rnoaa/inst/doc/buoy_vignette.R |only rnoaa-1.1.0/rnoaa/inst/doc/buoy_vignette.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/buoy_vignette.html |only rnoaa-1.1.0/rnoaa/inst/doc/homr_vignette.R |only rnoaa-1.1.0/rnoaa/inst/doc/homr_vignette.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/homr_vignette.html |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_attributes.R |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_attributes.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_attributes.html |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_vignette.R |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_vignette.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_vignette.html |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_workflow.R |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_workflow.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/ncdc_workflow.html |only rnoaa-1.1.0/rnoaa/inst/doc/rnoaa.R |only rnoaa-1.1.0/rnoaa/inst/doc/rnoaa_ropenaq.R |only rnoaa-1.1.0/rnoaa/inst/doc/rnoaa_ropenaq.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/rnoaa_ropenaq.html |only rnoaa-1.1.0/rnoaa/inst/doc/seaice_vignette.R |only rnoaa-1.1.0/rnoaa/inst/doc/seaice_vignette.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/seaice_vignette.html |only rnoaa-1.1.0/rnoaa/inst/doc/storms_vignette.R |only rnoaa-1.1.0/rnoaa/inst/doc/storms_vignette.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/storms_vignette.html |only rnoaa-1.1.0/rnoaa/inst/doc/swdi_vignette.R |only rnoaa-1.1.0/rnoaa/inst/doc/swdi_vignette.Rmd |only rnoaa-1.1.0/rnoaa/inst/doc/swdi_vignette.html |only rnoaa-1.1.0/rnoaa/inst/vign |only rnoaa-1.1.0/rnoaa/man/storm_columns.Rd |only rnoaa-1.1.0/rnoaa/man/storm_names.Rd |only rnoaa-1.1.0/rnoaa/man/storms.Rd |only rnoaa-1.1.0/rnoaa/tests/testthat/test-storms.R |only rnoaa-1.1.0/rnoaa/vignettes/buoy_vignette.Rmd |only rnoaa-1.1.0/rnoaa/vignettes/homr_vignette.Rmd |only rnoaa-1.1.0/rnoaa/vignettes/ncdc_attributes.Rmd |only rnoaa-1.1.0/rnoaa/vignettes/ncdc_vignette.Rmd |only rnoaa-1.1.0/rnoaa/vignettes/ncdc_workflow.Rmd |only rnoaa-1.1.0/rnoaa/vignettes/rnoaa_ropenaq.Rmd |only rnoaa-1.1.0/rnoaa/vignettes/seaice_vignette.Rmd |only rnoaa-1.1.0/rnoaa/vignettes/storms_vignette.Rmd |only rnoaa-1.1.0/rnoaa/vignettes/swdi_vignette.Rmd |only rnoaa-1.2.0/rnoaa/DESCRIPTION | 12 rnoaa-1.2.0/rnoaa/MD5 | 231 ++++------- rnoaa-1.2.0/rnoaa/NAMESPACE | 5 rnoaa-1.2.0/rnoaa/NEWS.md | 20 - 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Title: Model-Based Clustering for Multivariate Partial Ranking Data
Description: Implementation of a model-based clustering algorithm for
ranking data (C. Biernacki, J. Jacques (2013) <doi:10.1016/j.csda.2012.08.008>).
Multivariate rankings as well as partial rankings are taken
into account. This algorithm is based on an extension of the Insertion
Sorting Rank (ISR) model for ranking data, which is a meaningful and
effective model parametrized by a position parameter (the modal ranking,
quoted by mu) and a dispersion parameter (quoted by pi). The heterogeneity
of the rank population is modelled by a mixture of ISR, whereas conditional
independence assumption is considered for multivariate rankings.
Author: Quentin Grimonprez [aut, cre],
Julien Jacques [aut],
Christophe Biernacki [aut]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between Rankcluster versions 0.94.2 dated 2020-02-20 and 0.94.4 dated 2020-10-06
Rankcluster-0.94.2/Rankcluster/man/summary-methods.Rd |only Rankcluster-0.94.4/Rankcluster/DESCRIPTION | 20 - Rankcluster-0.94.4/Rankcluster/MD5 | 40 +- Rankcluster-0.94.4/Rankcluster/NAMESPACE | 2 Rankcluster-0.94.4/Rankcluster/R/Rankcluster-package.R | 8 Rankcluster-0.94.4/Rankcluster/R/data.R | 4 Rankcluster-0.94.4/Rankcluster/R/rankclust.R | 28 + Rankcluster-0.94.4/Rankcluster/R/resultClass.R | 40 +- Rankcluster-0.94.4/Rankcluster/build/vignette.rds |binary Rankcluster-0.94.4/Rankcluster/inst/CITATION | 18 + Rankcluster-0.94.4/Rankcluster/inst/doc/Rankcluster.pdf |binary Rankcluster-0.94.4/Rankcluster/inst/doc/dataFormat.html | 156 +++++++--- Rankcluster-0.94.4/Rankcluster/man/APA.Rd | 6 Rankcluster-0.94.4/Rankcluster/man/Rankcluster-package.Rd | 8 Rankcluster-0.94.4/Rankcluster/man/big4.Rd | 10 Rankcluster-0.94.4/Rankcluster/man/eurovision.Rd | 6 Rankcluster-0.94.4/Rankcluster/man/quiz.Rd | 6 Rankcluster-0.94.4/Rankcluster/man/rankclust.Rd | 10 Rankcluster-0.94.4/Rankcluster/man/sports.Rd | 6 Rankcluster-0.94.4/Rankcluster/man/sub-Rankclust-method.Rd | 8 Rankcluster-0.94.4/Rankcluster/man/summary-Rankclust-method.Rd |only Rankcluster-0.94.4/Rankcluster/man/words.Rd | 6 22 files changed, 270 insertions(+), 112 deletions(-)
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling
techniques or better understand data generating processes. The user
specifies a set of relationships between covariates, and generates
data based on these specifications. The final data sets can represent
data from randomized control trials, repeated measure (longitudinal)
designs, and cluster randomized trials. Missingness can be generated
using various mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre] (<https://orcid.org/0000-0002-0292-8780>),
Jacob Wujciak-Jens [aut] (<https://orcid.org/0000-0002-7281-3989>)
Maintainer: Keith Goldfeld <Keith.Goldfeld@nyumc.org>
Diff between simstudy versions 0.1.16 dated 2020-03-31 and 0.2.0 dated 2020-10-06
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simstudy-0.2.0/simstudy/man/genMultiFac.Rd | 9 simstudy-0.2.0/simstudy/man/genNthEvent.Rd | 17 simstudy-0.2.0/simstudy/man/genObs.Rd | 9 simstudy-0.2.0/simstudy/man/genOrdCat.Rd | 114 + simstudy-0.2.0/simstudy/man/genSpline.Rd | 17 simstudy-0.2.0/simstudy/man/genSurv.Rd | 14 simstudy-0.2.0/simstudy/man/iccRE.Rd | 10 simstudy-0.2.0/simstudy/man/mergeData.Rd | 11 simstudy-0.2.0/simstudy/man/negbinomGetSizeProb.Rd | 24 simstudy-0.2.0/simstudy/man/simstudy-deprecated.Rd |only simstudy-0.2.0/simstudy/man/simstudy-package.Rd |only simstudy-0.2.0/simstudy/man/trimData.Rd | 31 simstudy-0.2.0/simstudy/man/trtAssign.Rd | 6 simstudy-0.2.0/simstudy/man/trtObserve.Rd | 13 simstudy-0.2.0/simstudy/man/trtStepWedge.Rd | 24 simstudy-0.2.0/simstudy/man/updateDef.Rd | 5 simstudy-0.2.0/simstudy/man/updateDefAdd.Rd | 5 simstudy-0.2.0/simstudy/man/viewBasis.Rd | 10 simstudy-0.2.0/simstudy/man/viewSplines.Rd | 19 simstudy-0.2.0/simstudy/tests/testthat.R | 2 simstudy-0.2.0/simstudy/tests/testthat/helper-gen_def.R |only simstudy-0.2.0/simstudy/tests/testthat/setup-general.R |only simstudy-0.2.0/simstudy/tests/testthat/teardown-general.R |only simstudy-0.2.0/simstudy/tests/testthat/test-add_data.R |only simstudy-0.2.0/simstudy/tests/testthat/test-asserts.R |only simstudy-0.2.0/simstudy/tests/testthat/test-conditions.R |only simstudy-0.2.0/simstudy/tests/testthat/test-define_data.R |only simstudy-0.2.0/simstudy/tests/testthat/test-generate_correlated_data.R |only simstudy-0.2.0/simstudy/tests/testthat/test-generate_data.R |only simstudy-0.2.0/simstudy/tests/testthat/test-generate_dist.R |only simstudy-0.2.0/simstudy/tests/testthat/test-glue.R |only simstudy-0.2.0/simstudy/tests/testthat/test-group_data.R |only simstudy-0.2.0/simstudy/tests/testthat/test-internal_utility.R |only simstudy-0.2.0/simstudy/tests/testthat/test-missing_data.R |only simstudy-0.2.0/simstudy/tests/testthat/test-utility.R |only simstudy-0.2.0/simstudy/vignettes/clustered.Rmd |only simstudy-0.2.0/simstudy/vignettes/correlated.Rmd |only simstudy-0.2.0/simstudy/vignettes/double_dot_extension.Rmd |only simstudy-0.2.0/simstudy/vignettes/longitudinal.Rmd |only simstudy-0.2.0/simstudy/vignettes/missing.Rmd |only simstudy-0.2.0/simstudy/vignettes/ordinal.Rmd |only simstudy-0.2.0/simstudy/vignettes/simstudy.Rmd | 363 +++- simstudy-0.2.0/simstudy/vignettes/spline.Rmd |only simstudy-0.2.0/simstudy/vignettes/survival.Rmd |only simstudy-0.2.0/simstudy/vignettes/treat_and_exposure.Rmd |only 207 files changed, 2243 insertions(+), 1272 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between igraph versions 1.2.5 dated 2020-03-19 and 1.2.6 dated 2020-10-06
DESCRIPTION | 10 MD5 | 84 - R/assortativity.R | 4 R/cliques.R | 2 R/community.R | 14 R/games.R | 4 R/igraph-package.R | 2 R/palette.R | 6 R/scg.R | 4 R/sgm.R | 4 configure | 18 configure.ac | 2 inst/CITATION | 4 inst/NEWS.md | 6 inst/README.md | 2 man/aaa-igraph-package.Rd | 2 man/assortativity.Rd | 4 man/categorical_pal.Rd | 2 man/cliques.Rd | 2 man/cluster_infomap.Rd | 4 man/cluster_louvain.Rd | 2 man/cluster_spinglass.Rd | 4 man/cluster_walktrap.Rd | 4 man/diverging_pal.Rd | 2 man/match_vertices.Rd | 4 man/sample_correlated_gnp.Rd | 2 man/sample_correlated_gnp_pair.Rd | 2 man/scg-method.Rd | 4 man/sequential_pal.Rd | 2 src/Makevars.win | 2 src/foreign-dl-parser.c | 2030 ++++++++++++++---------------- src/foreign-dl-parser.h | 117 - src/foreign-gml-parser.c | 1803 ++++++++++++--------------- src/foreign-gml-parser.h | 94 - src/foreign-lgl-parser.c | 1747 ++++++++++++-------------- src/foreign-lgl-parser.h | 87 - src/foreign-ncol-parser.c | 1739 ++++++++++++-------------- src/foreign-ncol-parser.h | 84 - src/foreign-pajek-parser.c | 2523 ++++++++++++++++++-------------------- src/foreign-pajek-parser.h | 222 +-- src/igraph_version.h | 2 src/vector.pmt | 2 tests/testthat.R | 2 43 files changed, 5133 insertions(+), 5527 deletions(-)
Title: Vectorised Probability Distributions
Description: Vectorised distribution objects with tools for manipulating,
visualising, and using probability distributions. Designed to allow model
prediction outputs to return distributions rather than their parameters,
allowing users to directly interact with predictive distributions in a
data-oriented workflow. In addition to providing generic replacements for
p/d/q/r functions, other useful statistics can be computed including means,
variances, intervals, and highest density regions.
Author: Mitchell O'Hara-Wild [aut, cre]
(<https://orcid.org/0000-0001-6729-7695>),
Earo Wang [ctb] (<https://orcid.org/0000-0001-6448-5260>),
Matthew Kay [ctb] (<https://orcid.org/0000-0001-9446-0419>),
Alex Hayes [aut] (<https://orcid.org/0000-0002-4985-5160>)
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between distributional versions 0.2.0 dated 2020-08-03 and 0.2.1 dated 2020-10-06
DESCRIPTION | 6 +-- MD5 | 34 +++++++++++---------- NAMESPACE | 19 +++++++++++ NEWS.md | 32 ++++++++++++++++++++ R/dist_missing.R |only R/dist_negative_binomial.R | 8 +++-- R/dist_sample.R | 40 ++++++++++++++++++------- R/dist_student_t.R | 2 - R/distribution.R | 20 +++++++----- R/hilo.R | 8 ++++- R/mixture.R | 6 +++ R/transformed.R | 4 -- R/truncated.R | 67 +++++++++++++++++++++++++++++++++++------- build/distributional.pdf |binary man/dist_missing.Rd |only man/dist_negative_binomial.Rd | 8 +++-- man/dist_truncated.Rd | 26 ++++++++++++++++ man/median.distribution.Rd | 3 - tests/testthat/Rplots.pdf |binary 19 files changed, 221 insertions(+), 62 deletions(-)
More information about distributional at CRAN
Permanent link
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2017-04-21 0.1.1
2017-03-12 0.0.1
Title: Computationally Efficient Queue Simulation
Description: Implementation of a computationally efficient method for
simulating queues with arbitrary arrival and service times.
Please see Ebert, Wu, Mengersen & Ruggeri (2020, <doi:10.18637/jss.v095.i05>)
for further details.
Author: Anthony Ebert [aut, cre] (<https://orcid.org/0000-0003-3002-6300>),
Kerrie Mengersen [ths],
Paul Wu [ths],
Fabrizio Ruggeri [ths]
Maintainer: Anthony Ebert <anthonyebert+CRAN@gmail.com>
Diff between queuecomputer versions 0.8.3 dated 2018-10-16 and 1.0.0 dated 2020-10-06
queuecomputer-0.8.3/queuecomputer/man/print.queue_list.Rd |only queuecomputer-1.0.0/queuecomputer/DESCRIPTION | 14 queuecomputer-1.0.0/queuecomputer/MD5 | 38 queuecomputer-1.0.0/queuecomputer/NAMESPACE | 1 queuecomputer-1.0.0/queuecomputer/R/core_queuefunctions.R | 4 queuecomputer-1.0.0/queuecomputer/R/dplyr_plugins.R | 2 queuecomputer-1.0.0/queuecomputer/R/globals.R |only queuecomputer-1.0.0/queuecomputer/R/plot_functions.R | 8 queuecomputer-1.0.0/queuecomputer/R/post_analysis.R | 1 queuecomputer-1.0.0/queuecomputer/R/utils.R | 18 queuecomputer-1.0.0/queuecomputer/README.md | 81 - queuecomputer-1.0.0/queuecomputer/build/vignette.rds |binary queuecomputer-1.0.0/queuecomputer/inst/CITATION | 34 queuecomputer-1.0.0/queuecomputer/inst/doc/Howto.R | 12 queuecomputer-1.0.0/queuecomputer/inst/doc/Howto.Rmd | 4 queuecomputer-1.0.0/queuecomputer/inst/doc/Howto.html | 497 +++++-- queuecomputer-1.0.0/queuecomputer/inst/doc/MMk_queues.R | 20 queuecomputer-1.0.0/queuecomputer/inst/doc/MMk_queues.html | 630 ++++++---- queuecomputer-1.0.0/queuecomputer/src/loops.cpp | 24 queuecomputer-1.0.0/queuecomputer/tests/testthat/test_addons.R | 2 queuecomputer-1.0.0/queuecomputer/vignettes/Howto.Rmd | 4 21 files changed, 934 insertions(+), 460 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates
graphics with details from statistical tests included in the plots
themselves. It provides an easier API to generate information-rich plots
for statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports only the most common types of
statistical tests: parametric, nonparametric, robust, and Bayesian
versions of t-test/ANOVA, correlation analyses, contingency table
analysis, meta-analysis, and regression analyses.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.6.0 dated 2020-09-13 and 0.6.1 dated 2020-10-06
DESCRIPTION | 16 MD5 | 140 +-- NAMESPACE | 8 NEWS.md | 19 R/ggbarstats.R | 4 R/ggbetweenstats.R | 6 R/ggcoefstats.R | 10 R/ggwithinstats.R | 4 R/grouped_ggbarstats.R | 2 R/grouped_ggbetweenstats.R | 5 R/grouped_ggcorrmat.R | 5 R/grouped_ggdotplotstats.R | 2 R/grouped_gghistostats.R | 2 R/grouped_ggpiestats.R | 2 R/grouped_ggscatterstats.R | 4 R/grouped_ggwithinstats.R | 5 R/helpers_ggcatstats_graphics.R | 37 - R/helpers_ggcoefstats_graphics.R | 85 -- R/helpers_theme_ggstatsplot.R | 3 R/reexports.R | 10 README.md | 1115 ++++++++++++++++--------------- inst/WORDLIST | 15 inst/doc/additional.html | 13 man/figures/README-ggbarstats1-1.png |binary man/figures/README-ggbarstats2-1.png |binary man/figures/README-ggbetweenstats1-1.png |binary man/figures/README-ggbetweenstats2-1.png |binary man/figures/README-ggbetweenstats3-1.png |binary man/figures/README-ggcoefstats1-1.png |binary man/figures/README-ggcoefstats2-1.png |binary man/figures/README-ggcorrmat1-1.png |binary man/figures/README-ggcorrmat2-1.png |binary man/figures/README-ggdotplotstats1-1.png |binary man/figures/README-ggdotplotstats2-1.png |binary man/figures/README-gghistostats1-1.png |binary man/figures/README-gghistostats2-1.png |binary man/figures/README-ggpiestats1-1.png |binary man/figures/README-ggpiestats2-1.png |binary man/figures/README-ggpiestats3-1.png |binary man/figures/README-ggscatterstats1-1.png |binary man/figures/README-ggscatterstats2-1.png |binary man/figures/README-ggscatterstats3-1.png |binary man/figures/README-ggwithinstats1-1.png |binary man/figures/README-ggwithinstats2-1.png |binary man/figures/README-ridgeplot-1.png |binary man/ggbarstats.Rd | 4 man/ggbetweenstats.Rd | 4 man/ggcorrmat.Rd | 2 man/ggscatterstats.Rd | 2 man/ggwithinstats.Rd | 2 man/grouped_ggcorrmat.Rd | 2 man/grouped_ggscatterstats.Rd | 4 man/reexports.Rd | 4 tests/testthat/test-ggbarstats.R | 13 tests/testthat/test-ggbetweenstats.R | 13 tests/testthat/test-ggcoefstats.R | 66 - tests/testthat/test-ggcorrmat.R | 4 tests/testthat/test-ggdotplotstats.R | 27 tests/testthat/test-ggpiestats.R | 10 tests/testthat/test-ggscatterstats.R | 41 - tests/testthat/test-ggwithinstats.R | 36 - tests/testthat/test-grouped_ggbarstats.R | 2 tests/testthat/test-grouped_ggpiestats.R | 2 tests/testthat/test-pairwise_ggsignif.R | 179 ++-- vignettes/web_only/combine_plots.Rmd | 3 vignettes/web_only/faq.Rmd | 49 + vignettes/web_only/gallery.Rmd | 1 vignettes/web_only/ggbetweenstats.Rmd | 4 vignettes/web_only/ggcoefstats.Rmd | 227 +++--- vignettes/web_only/ggcorrmat.Rmd | 6 vignettes/web_only/purrr_examples.Rmd | 17 71 files changed, 1101 insertions(+), 1135 deletions(-)
Title: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell
Transcriptomics
Description: An open, multi-algorithmic pipeline for easy, fast and efficient
analysis of cellular sub-populations and the molecular signatures that
characterize them. The pipeline consists of four successive steps: data
pre-processing, cellular clustering with pseudo-temporal ordering, defining
differential expressed genes and biomarker identification. This package
implements extensions of the work published by Ghannoum et. al. (2019)
<doi:10.1101/700989>.
Author: Salim Ghannoum [aut, cph],
Alvaro Köhn-Luque [aut, ths],
Waldir Leoncio [cre, aut],
Damiano Fantini [ctb]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between DIscBIO versions 1.0.0 dated 2020-08-26 and 1.0.1 dated 2020-10-06
DESCRIPTION | 10 ++++---- MD5 | 37 ++++++++++++++++----------------- NEWS.md |only R/DIscBIO-classes.R | 2 - R/DIscBIO-generic-ClustDiffGenes.R | 7 +----- R/DIscBIO-generic-FindOutliers.R | 9 ++++---- R/DIscBIO-generic-clusteringOrder.R | 12 ++++++++++ R/DIscBIO-generic-clustheatmap.R | 3 -- R/DIscBIO-generic-plotExptSNE.R | 7 +++--- R/DIscBIO-generic-plotSilhouette.R | 11 +++++++-- R/DIscBIO-generic-plottSNE.R | 3 +- R/DIscBIO-generic-pseudoTimeOrdering.R | 8 +++++-- R/J48DTeval.R | 12 +++++----- R/Jaccard.R | 5 ---- R/Networking.R | 6 ++--- R/PlotMBpca.R | 5 ++-- R/RpartEVAL.R | 12 +++++----- R/VolcanoPlot.R | 13 +---------- R/customConverters.R | 17 --------------- tests/testthat/test-DIscBIO.IMP.R | 2 - 20 files changed, 86 insertions(+), 95 deletions(-)
Title: PC Algorithm with the Principle of Mendelian Randomization
Description: A PC Algorithm with the Principle of Mendelian Randomization. This package implements the MRPC
(PC with the principle of Mendelian randomization) algorithm to infer causal graphs. It also
contains functions to simulate data under a certain topology, to visualize a graph in different
ways, and to compare graphs and quantify the differences.
See Badsha and Fu (2019) <doi.org/10.3389/fgene.2019.00460>,Badsha, Martin and Fu (2018) <arXiv:1806.01899>.
Author: Md Bahadur Badsha [aut,cre],Evan A Martin [ctb] and Audrey Qiuyan Fu [aut]
Maintainer: Md Bahadur Badsha <mbbadshar@gmail.com>
Diff between MRPC versions 2.2.0 dated 2019-11-16 and 2.2.1 dated 2020-10-06
MRPC-2.2.0/MRPC/data/data_GEUVADIS.rda |only MRPC-2.2.1/MRPC/DESCRIPTION | 12 MRPC-2.2.1/MRPC/MD5 | 100 +-- MRPC-2.2.1/MRPC/NAMESPACE | 24 MRPC-2.2.1/MRPC/R/AdjustMatrix.R |only MRPC-2.2.1/MRPC/R/CompareMethodsNodeOrdering.R | 696 ++++++++++++--------- MRPC-2.2.1/MRPC/R/CompareMethodsVStructure.R | 716 +++++++++++++++++----- MRPC-2.2.1/MRPC/R/EdgeOrientation.R | 35 - MRPC-2.2.1/MRPC/R/IdentifyAssociatedPCs.R |only MRPC-2.2.1/MRPC/R/MRPC.R | 2 MRPC-2.2.1/MRPC/R/ModiSkeleton.R | 6 MRPC-2.2.1/MRPC/R/PlotDendrogram.R | 20 MRPC-2.2.1/MRPC/R/PlotGraphWithModules.R | 2 MRPC-2.2.1/MRPC/R/RecallPrecision.R | 94 +- MRPC-2.2.1/MRPC/R/aSHD.R | 28 MRPC-2.2.1/MRPC/data/Data_GEUVADIS.rda |only MRPC-2.2.1/MRPC/data/datalist | 2 MRPC-2.2.1/MRPC/man/AdjustMatrix.Rd |only MRPC-2.2.1/MRPC/man/CompareMethodsNodeOrdering.Rd | 33 - MRPC-2.2.1/MRPC/man/CompareMethodsVStructure.Rd | 10 MRPC-2.2.1/MRPC/man/CutModules.Rd | 2 MRPC-2.2.1/MRPC/man/Data_GEUVADIS.Rd | 2 MRPC-2.2.1/MRPC/man/EdgeOrientation.Rd | 8 MRPC-2.2.1/MRPC/man/IdentifyAssociatedPCs.Rd |only MRPC-2.2.1/MRPC/man/MRPC.Rd | 45 - MRPC-2.2.1/MRPC/man/MRPCclass.Rd | 6 MRPC-2.2.1/MRPC/man/MRPCtruth.Rd | 2 MRPC-2.2.1/MRPC/man/ModiSkeleton.Rd | 4 MRPC-2.2.1/MRPC/man/PlotDendrogram.Rd | 2 MRPC-2.2.1/MRPC/man/PlotGraphWithModules.Rd | 8 MRPC-2.2.1/MRPC/man/RecallPrecision.Rd | 4 MRPC-2.2.1/MRPC/man/RobustCor.Rd | 2 MRPC-2.2.1/MRPC/man/SeqFDR.Rd | 2 MRPC-2.2.1/MRPC/man/SimulateData.Rd | 2 MRPC-2.2.1/MRPC/man/SimulateData1P.Rd | 2 MRPC-2.2.1/MRPC/man/SimulateData2P.Rd | 2 MRPC-2.2.1/MRPC/man/SimulateData3P.Rd | 2 MRPC-2.2.1/MRPC/man/SimulateDataNP.Rd | 2 MRPC-2.2.1/MRPC/man/aSHD.Rd | 2 MRPC-2.2.1/MRPC/man/data_GEUVADIS_combined.Rd | 32 MRPC-2.2.1/MRPC/man/data_examples.Rd | 18 MRPC-2.2.1/MRPC/man/data_with_outliers.Rd | 216 ++++-- MRPC-2.2.1/MRPC/man/data_without_outliers.Rd | 131 +--- MRPC-2.2.1/MRPC/man/empty.Rd | 2 MRPC-2.2.1/MRPC/man/mpinv.Rd | 2 MRPC-2.2.1/MRPC/man/seqDiff.Rd | 4 MRPC-2.2.1/MRPC/man/simu_data_M0.Rd | 2 MRPC-2.2.1/MRPC/man/simu_data_M1.Rd | 2 MRPC-2.2.1/MRPC/man/simu_data_M2.Rd | 2 MRPC-2.2.1/MRPC/man/simu_data_M3.Rd | 2 MRPC-2.2.1/MRPC/man/simu_data_M4.Rd | 2 MRPC-2.2.1/MRPC/man/simu_data_layered.Rd | 2 MRPC-2.2.1/MRPC/man/simu_data_multiparent.Rd | 2 MRPC-2.2.1/MRPC/man/simu_data_starshaped.Rd | 2 54 files changed, 1460 insertions(+), 840 deletions(-)
Title: Model Selection and Post-Hoc Analysis for (G)LMER Models
Description: The main function of the package is to perform backward selection of fixed effects, forward fitting of the random effects, and post-hoc analysis using parallel capabilities. Other functionality includes the computation of ANOVAs with upper- or lower-bound p-values and R-squared values for each model term, model criticism plots, data trimming on model residuals, and data visualization. The data to run examples is contained in package LCF_data.
Author: Antoine Tremblay, Statistics Canada, and Johannes Ransijn, University of Copenhagen
Maintainer: "Antoine Tremblay, Statistics Canada" <trea26@gmail.com>
Diff between LMERConvenienceFunctions versions 2.10 dated 2015-01-31 and 3.0 dated 2020-10-06
DESCRIPTION | 17 +-- MD5 | 60 ++++++------ NAMESPACE | 11 ++ NEWS | 16 +++ R/bfFixefLMER_F.fnc.R | 18 +-- R/bfFixefLMER_t.fnc.R | 32 ++++-- R/fitLMER.fnc.R | 14 ++ R/pamer.fnc.R | 26 +++-- R/plotDensity3d.fnc.R | 46 --------- R/plotLMER3d.fnc.R | 160 -------------------------------- R/plotRaw3d.fnc.R | 73 -------------- man/LMERConvenienceFunctions-package.Rd | 16 +-- man/bfFixefLMER_F.fnc.Rd | 2 man/bfFixefLMER_t.fnc.Rd | 2 man/cd.Rd | 2 man/cdf.Rd | 2 man/cdup.Rd | 2 man/cn.Rd | 2 man/f.Rd | 2 man/ffRanefLMER.fnc.Rd | 2 man/fitLMER.fnc.Rd | 2 man/mcp.fnc.Rd | 2 man/mcposthoc.fnc.Rd | 2 man/pamer.fnc.Rd | 7 - man/perSubjectTrim.fnc.Rd | 2 man/plotDensity3d.fnc.Rd | 15 +-- man/plotLMER3d.fnc.Rd | 28 +---- man/plotRaw3d.fnc.Rd | 12 +- man/relLik.Rd | 2 man/romr.fnc.Rd | 2 man/summary.mcposthoc.Rd | 2 31 files changed, 175 insertions(+), 406 deletions(-)
More information about LMERConvenienceFunctions at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-21 1.0.0.1
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] (Methods for mutating vertical tabs &
updateMultiInput),
Wil Davis [ctb] (numericRangeInput function),
Spencer Matthews [ctb] (autoNumeric methods)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.5.3 dated 2020-06-01 and 0.5.4 dated 2020-10-06
shinyWidgets-0.5.3/shinyWidgets/inst/assets/selectPicker |only shinyWidgets-0.5.4/shinyWidgets/DESCRIPTION | 50 - shinyWidgets-0.5.4/shinyWidgets/MD5 | 380 +++++---- shinyWidgets-0.5.4/shinyWidgets/NAMESPACE | 8 shinyWidgets-0.5.4/shinyWidgets/NEWS.md | 13 shinyWidgets-0.5.4/shinyWidgets/R/bootstrap-utils.R | 2 shinyWidgets-0.5.4/shinyWidgets/R/dependencies.R | 75 + shinyWidgets-0.5.4/shinyWidgets/R/drop-menu.R | 4 shinyWidgets-0.5.4/shinyWidgets/R/input-airDatepicker.R | 4 shinyWidgets-0.5.4/shinyWidgets/R/input-autonumeric.R |only shinyWidgets-0.5.4/shinyWidgets/R/input-awesomecheckbox.R | 2 shinyWidgets-0.5.4/shinyWidgets/R/input-awesomeradio.R | 2 shinyWidgets-0.5.4/shinyWidgets/R/input-checkboxgroupbuttons.R | 1 shinyWidgets-0.5.4/shinyWidgets/R/input-icon.R | 104 ++ shinyWidgets-0.5.4/shinyWidgets/R/input-noUiSlider.R | 13 shinyWidgets-0.5.4/shinyWidgets/R/input-radiogroupbuttons.R | 1 shinyWidgets-0.5.4/shinyWidgets/R/input-selectpicker.R | 20 shinyWidgets-0.5.4/shinyWidgets/R/input-spectrum.R | 11 shinyWidgets-0.5.4/shinyWidgets/R/pickerOptions.R | 8 shinyWidgets-0.5.4/shinyWidgets/R/sweetalert.R | 62 - shinyWidgets-0.5.4/shinyWidgets/README.md | 5 shinyWidgets-0.5.4/shinyWidgets/inst/assets/air-datepicker/i18n/datepicker.ja.js |only shinyWidgets-0.5.4/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.ja.js |only shinyWidgets-0.5.4/shinyWidgets/inst/assets/autonumeric |only shinyWidgets-0.5.4/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/awesome-bootstrap-checkbox.min.css | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/awesome-bootstrap-checkbox.scss | 6 shinyWidgets-0.5.4/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/awesomeCheckbox-bindings.js | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/compile-css.R | 6 shinyWidgets-0.5.4/shinyWidgets/inst/assets/bootstrap-select |only shinyWidgets-0.5.4/shinyWidgets/inst/assets/bootstrap-switch/switch-bindings.js | 49 - shinyWidgets-0.5.4/shinyWidgets/inst/assets/buttons-group/checkboxGroupButtons-bindings.js | 5 shinyWidgets-0.5.4/shinyWidgets/inst/assets/buttons-group/checkboxGroupButtons.css | 11 shinyWidgets-0.5.4/shinyWidgets/inst/assets/buttons-group/radioGroupButtons-bindings.js | 5 shinyWidgets-0.5.4/shinyWidgets/inst/assets/buttons-group/radioGroupButtons.css | 22 shinyWidgets-0.5.4/shinyWidgets/inst/assets/multi/multi-bindings.js | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/nouislider/nouislider-bindings.js | 25 shinyWidgets-0.5.4/shinyWidgets/inst/assets/numeric/numeric-icon-bindings.js | 26 shinyWidgets-0.5.4/shinyWidgets/inst/assets/numeric/text-icon-bindings.js |only shinyWidgets-0.5.4/shinyWidgets/inst/assets/shinyWidgets-bindings.min.js | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/shinyWidgets.min.css | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sliderText/sliderTextInput-bindings.js | 6 shinyWidgets-0.5.4/shinyWidgets/inst/assets/spectrum/spectrum-bindings.js | 69 - shinyWidgets-0.5.4/shinyWidgets/inst/assets/spectrum/spectrum.min.css | 9 shinyWidgets-0.5.4/shinyWidgets/inst/assets/spectrum/spectrum.min.js | 9 shinyWidgets-0.5.4/shinyWidgets/inst/assets/spectrum/sw-spectrum.css | 1 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/css/bootstrap-4.min.css | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/css/borderless.min.css | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/css/bulma.min.css |only shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/css/dark.min.css | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/css/default.min.css | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/css/material-ui.min.css | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/css/minimal.min.css | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/js/promise.min.js |only shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/js/sweetalert2.min.js | 2 shinyWidgets-0.5.4/shinyWidgets/inst/assets/sweetalert2/sweetalert-bindings.js | 73 - shinyWidgets-0.5.4/shinyWidgets/inst/assets/tippy/drop-menu-bindings.js | 5 shinyWidgets-0.5.4/shinyWidgets/inst/assets/tools.R | 12 shinyWidgets-0.5.4/shinyWidgets/man/airDatepicker.Rd | 394 +++++----- shinyWidgets-0.5.4/shinyWidgets/man/autonumericInput.Rd |only shinyWidgets-0.5.4/shinyWidgets/man/bootstrap-utils.Rd | 2 shinyWidgets-0.5.4/shinyWidgets/man/dropMenu.Rd | 2 shinyWidgets-0.5.4/shinyWidgets/man/dropMenuOptions.Rd | 2 shinyWidgets-0.5.4/shinyWidgets/man/formaNumericInputUpdate.Rd |only shinyWidgets-0.5.4/shinyWidgets/man/formatNumericInput.Rd |only shinyWidgets-0.5.4/shinyWidgets/man/html-dependencies.Rd | 9 shinyWidgets-0.5.4/shinyWidgets/man/numericInputIcon.Rd | 230 ++--- shinyWidgets-0.5.4/shinyWidgets/man/numericRangeInput.Rd | 130 +-- shinyWidgets-0.5.4/shinyWidgets/man/pickerInput.Rd | 10 shinyWidgets-0.5.4/shinyWidgets/man/pickerOptions.Rd | 7 shinyWidgets-0.5.4/shinyWidgets/man/textInputIcon.Rd | 202 ++--- shinyWidgets-0.5.4/shinyWidgets/man/updateAutonumericInput.Rd |only shinyWidgets-0.5.4/shinyWidgets/man/updateNumericInputIcon.Rd | 27 shinyWidgets-0.5.4/shinyWidgets/man/updateTextInputIcon.Rd | 27 shinyWidgets-0.5.4/shinyWidgets/man/useSweetAlert.Rd | 8 shinyWidgets-0.5.4/shinyWidgets/man/wNumbFormat.Rd | 3 shinyWidgets-0.5.4/shinyWidgets/tests/testthat/test-SweetAlert.R | 1 shinyWidgets-0.5.4/shinyWidgets/tests/testthat/test-autonumeric.R |only 77 files changed, 1234 insertions(+), 948 deletions(-)
Title: Multiple Pairwise Comparison Tests
Description: Multiple pairwise comparison tests on tidy data for
one-way analysis of variance for both between-subjects and
within-subjects designs. Currently, it supports only the most common
types of statistical analyses and tests: parametric (Welch's and
Student's t-test), nonparametric (Durbin-Conover and Dunn test),
robust (Yuen’s trimmed means test), and Bayes Factor (Student's
t-test).
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between pairwiseComparisons versions 2.0.1 dated 2020-09-12 and 3.0.0 dated 2020-10-06
pairwiseComparisons-2.0.1/pairwiseComparisons/R/games_howell.R |only pairwiseComparisons-2.0.1/pairwiseComparisons/R/pairwise_expr_helpers.R |only pairwiseComparisons-2.0.1/pairwiseComparisons/man/games_howell.Rd |only pairwiseComparisons-2.0.1/pairwiseComparisons/tests/testthat/test-pairwise_caption.R |only pairwiseComparisons-2.0.1/pairwiseComparisons/tests/testthat/test-switch_statements.R |only pairwiseComparisons-3.0.0/pairwiseComparisons/DESCRIPTION | 10 pairwiseComparisons-3.0.0/pairwiseComparisons/MD5 | 39 pairwiseComparisons-3.0.0/pairwiseComparisons/NAMESPACE | 29 pairwiseComparisons-3.0.0/pairwiseComparisons/NEWS.md | 14 pairwiseComparisons-3.0.0/pairwiseComparisons/R/global_vars.R | 1 pairwiseComparisons-3.0.0/pairwiseComparisons/R/helpers.R | 84 + pairwiseComparisons-3.0.0/pairwiseComparisons/R/pairwise_caption_helpers.R |only pairwiseComparisons-3.0.0/pairwiseComparisons/R/pairwise_comparisons.R | 371 +---- pairwiseComparisons-3.0.0/pairwiseComparisons/R/reexports.R | 15 pairwiseComparisons-3.0.0/pairwiseComparisons/README.md | 707 ++++------ pairwiseComparisons-3.0.0/pairwiseComparisons/inst/WORDLIST | 1 pairwiseComparisons-3.0.0/pairwiseComparisons/man/figures/README-ggsignif-1.png |binary pairwiseComparisons-3.0.0/pairwiseComparisons/man/p_adjust_text.Rd | 2 pairwiseComparisons-3.0.0/pairwiseComparisons/man/pairwise_caption.Rd | 22 pairwiseComparisons-3.0.0/pairwiseComparisons/man/pairwise_comparisons.Rd | 35 pairwiseComparisons-3.0.0/pairwiseComparisons/man/reexports.Rd | 5 pairwiseComparisons-3.0.0/pairwiseComparisons/tests/testthat/test-pairwise_caption_helpers.R |only pairwiseComparisons-3.0.0/pairwiseComparisons/tests/testthat/test-pairwise_comparisons_between.R | 132 - pairwiseComparisons-3.0.0/pairwiseComparisons/tests/testthat/test-pairwise_comparisons_within.R | 93 - 24 files changed, 715 insertions(+), 845 deletions(-)
More information about pairwiseComparisons at CRAN
Permanent link
Title: Tools for Social Network Analysis
Description: A range of tools for social network analysis, including node and graph-level indices, structural distance and covariance methods, structural equivalence detection, network regression, random graph generation, and 2D/3D network visualization.
Author: Carter T. Butts [aut, cre, cph]
Maintainer: Carter T. Butts <buttsc@uci.edu>
Diff between sna versions 2.5 dated 2019-12-10 and 2.6 dated 2020-10-06
ChangeLog | 13 +++++++++++++ DESCRIPTION | 10 +++++----- MD5 | 19 ++++++++++--------- R/connectivity.R | 37 ++++++++++++++++++++++++++++++++++++- R/dataprep.R | 4 ++-- R/gli.R | 4 ++-- R/gtest.R | 4 +++- R/roles.R | 10 ++++++++-- R/visualization.R | 7 ++++--- man/redist.Rd | 7 +++++++ man/simmelian.Rd |only 11 files changed, 90 insertions(+), 25 deletions(-)
Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of R documentation objects,
including functions reprompt() and ereprompt() for updating 'Rd'
documentation for functions, methods and classes; 'Rd' macros for
citations and import of references from 'bibtex' files for use in
'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and
inserting snippets of 'R' code and the results of its evaluation or
creating graphics on the fly; and many functions for manipulation of
references and Rd files.
Author: Georgi N. Boshnakov [aut, cre],
Duncan Murdoch [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 1.0.0 dated 2020-07-01 and 2.0 dated 2020-10-06
DESCRIPTION | 12 - MD5 | 37 ++-- NAMESPACE | 3 NEWS.md | 21 ++ R/bib.R | 158 ++++++++++++++---- README.md | 76 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 10 - inst/auto |only inst/doc/Inserting_bibtex_references.pdf |binary inst/doc/Inserting_figures_and_evaluated_examples.pdf |binary man/Rdo_which.Rd | 30 +-- man/Rdpack-package.Rd | 2 man/get_bibentries.Rd | 15 + man/insert_all_ref.Rd | 4 man/insert_ref.Rd | 14 + man/macros/refmacros.Rd | 5 man/parse_text.Rd | 4 vignettes/Inserting_bibtex_references.org | 3 20 files changed, 257 insertions(+), 137 deletions(-)
Title: An Interface Between the 'FSK-ML' Standard and 'R'
Description: Functions for importing, creating, editing and
exporting 'FSK' files <https://foodrisklabs.bfr.bund.de/fsk-ml-food-safety-knowledge-markup-language/>
using the 'R' programming environment. Furthermore, it enables users
to run simulations contained in the 'FSK' files and visualize the results.
Author: Alberto Garre [aut, cre],
Miguel de Alba Aparicio [aut],
Pablo S. Fernandez [aut],
Matthias Filter [aut]
Maintainer: Alberto Garre <garre.alberto@gmail.com>
Diff between FSK2R versions 0.1.1 dated 2020-05-13 and 0.1.2 dated 2020-10-06
DESCRIPTION | 6 - MD5 | 9 +- NEWS.md |only R/metadata.R | 4 - inst/doc/basic_FSK2R.html | 177 +++++++++++++++++++++++----------------------- man/dataframe_to_list.Rd | 4 - 6 files changed, 101 insertions(+), 99 deletions(-)
Title: Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
Description: Collection of functions to enhance 'ggplot2' and 'ggiraph'. Provides functions for exploratory plots.
All plot can be a 'static' plot or an 'interactive' plot using 'ggiraph'.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between ggiraphExtra versions 0.2.9 dated 2018-07-22 and 0.3.0 dated 2020-10-06
DESCRIPTION | 15 MD5 | 124 +-- NAMESPACE | 7 NEWS | 15 R/data.R | 2 R/ggAncova.R | 19 R/ggBar.R | 11 R/ggBoxplot.R | 13 R/ggCLE.R | 9 R/ggCatepillar.R | 9 R/ggChoropleth.R | 11 R/ggCor.R | 9 R/ggEffect.R | 56 - R/ggErrorBar.R | 8 R/ggHSD.R | 11 R/ggHeatmap.R | 8 R/ggPair.R | 17 R/ggPieDonut.R | 27 R/ggPoints.R | 16 R/ggPredict.R | 11 R/ggRadar.R | 9 R/ggSpine.R | 47 - R/ggViolin.R | 4 R/theme_clean.R | 6 README.md | 2 build/vignette.rds |binary inst/doc/ggPredict.R | 46 - inst/doc/ggPredict.Rmd | 11 inst/doc/ggPredict.html | 1626 ++++++++++++++++++++++++++++++++++++++++----- inst/doc/introduction.R | 18 inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 1581 ++++++++++++++++++++++++++++++++++++++++--- man/browsers.Rd | 6 man/ggAncova.Rd | 6 man/ggArea.Rd | 14 man/ggBar.Rd | 23 man/ggBoxplot.Rd | 15 man/ggCLE.Rd | 15 man/ggCatepillar.Rd | 12 man/ggChoropleth.Rd | 14 man/ggCor.Rd | 18 man/ggDensity.Rd | 10 man/ggDonut.Rd | 30 man/ggDot.Rd | 17 man/ggEffect.Rd | 22 man/ggErrorBar.Rd | 12 man/ggHSD.Rd | 1 man/ggHeatmap.Rd | 20 man/ggPair.Rd | 17 man/ggPie.Rd | 17 man/ggPieDonut.Rd | 19 man/ggPoints.Rd | 26 man/ggPredict.Rd | 15 man/ggRadar.Rd | 17 man/ggSpine.Rd | 50 + man/ggViolin.Rd | 15 man/rose.Rd | 4 man/summarySE.Rd | 10 man/taco.Rd | 6 man/theme_clean.Rd | 2 man/unselectNumeric.Rd | 2 vignettes/ggPredict.Rmd | 11 vignettes/introduction.Rmd | 2 63 files changed, 3624 insertions(+), 574 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-28 0.1.2
2017-10-24 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-03 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-29 2.0.0
2017-02-02 1.0.2
2016-12-29 1.0.1
2016-11-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-30 4.0.9
Title: Quantile G-Computation
Description: G-computation for a set of time-fixed exposures
with quantile-based basis functions, possibly under linearity and
homogeneity assumptions. This approach estimates a regression line
corresponding to the expected change in the outcome (on the link
basis) given a simultaneous increase in the quantile-based category
for all exposures. Works with continuous, binary, and right-censored
time-to-event outcomes. Reference: Alexander P. Keil, Jessie P.
Buckley, Katie M. OBrien, Kelly K. Ferguson, Shanshan Zhao, and
Alexandra J. White (2019) A quantile-based g-computation approach to
addressing the effects of exposure mixtures; <doi:10.1289/EHP5838>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <akeil@unc.edu>
Diff between qgcomp versions 2.5.0 dated 2020-09-09 and 2.6.0 dated 2020-10-06
DESCRIPTION | 8 MD5 | 87 +-- NAMESPACE | 1 NEWS.md | 15 R/base.R | 957 ------------------------------------- R/base_bounds.R |only R/base_extensions.R | 143 +++-- R/base_generics.R |only R/base_hurdle.R | 8 R/base_plots.R |only R/base_samplesplits.R | 20 R/base_surv.R | 86 +++ R/base_zi.R | 123 ++++ R/utility.R | 92 --- README.md | 73 +- inst/doc/qgcomp-vignette.Rmd | 8 inst/doc/qgcomp-vignette.html | 138 ++--- inst/fig/res1.png |binary inst/fig/res2.png |binary inst/fig/res4.png |binary inst/fig/res5.png |binary inst/fig/res7.png |binary man/glance.qgcompfit.Rd | 6 man/hurdlemsm.fit.control.Rd | 2 man/mice.impute.leftcenslognorm.Rd | 35 + man/modelbound.boot.Rd | 12 man/plot.qgcompfit.Rd | 11 man/pointwisebound.boot.Rd | 18 man/pointwisebound.noboot.Rd | 17 man/predict.qgcompfit.Rd | 2 man/print.qgcompfit.Rd | 2 man/qgcomp.boot.Rd | 14 man/qgcomp.survcurve.boot.Rd |only man/qgcomp.zi.boot.Rd | 6 man/split_data.Rd | 2 man/zimsm.fit.Rd | 2 man/zimsm.fit.control.Rd | 5 tests/test_asis.R | 8 tests/test_basics.R |only tests/test_bayesqgcomp.R | 27 + tests/test_cox_msmtest.R | 6 tests/test_factor.R | 3 tests/test_poisson.R | 8 tests/test_splits.R |only tests/test_utilities.R |only tests/test_zi.R | 16 tests/test_zzzplots.R | 32 - vignettes/qgcomp-vignette.Rmd | 8 48 files changed, 674 insertions(+), 1327 deletions(-)
Title: NEON Data Store
Description: The National Ecological Observatory Network (NEON) provides access
to its numerous data products through its REST API,
<https://data.neonscience.org/data-api/>. This package provides a
high-level user interface for downloading and storing NEON data products.
While each of NEON data products consist of hundreds or thousands of individual
files. Unlike 'neonUtilities', this package will avoid repeated downloading,
provides persistent storage, and improves performance. This package does not
provide expose interactions with the individual low-level NEON API endpoints.
Author: Carl Boettiger [aut, cre] (<https://orcid.org/0000-0002-1642-628X>),
Quinn Thomas [aut] (<https://orcid.org/0000-0003-1282-7825>),
Christine Laney [aut] (<https://orcid.org/0000-0002-4944-2083>),
Claire Lunch [aut] (<https://orcid.org/0000-0001-8753-6593>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between neonstore versions 0.2.3 dated 2020-09-22 and 0.3.0 dated 2020-10-06
neonstore-0.2.3/neonstore/tests/testthat/test-store.R |only neonstore-0.3.0/neonstore/DESCRIPTION | 19 neonstore-0.3.0/neonstore/MD5 | 46 +- neonstore-0.3.0/neonstore/NAMESPACE | 14 neonstore-0.3.0/neonstore/NEWS.md | 5 neonstore-0.3.0/neonstore/R/connection_pane.R |only neonstore-0.3.0/neonstore/R/neon_data.R | 110 ++-- neonstore-0.3.0/neonstore/R/neon_db.R |only neonstore-0.3.0/neonstore/R/neon_download.R | 91 +++ neonstore-0.3.0/neonstore/R/neon_download_s3.R | 29 - neonstore-0.3.0/neonstore/R/neon_index.R | 51 ++ neonstore-0.3.0/neonstore/R/neon_read.R | 120 +++-- neonstore-0.3.0/neonstore/R/neon_store.R |only neonstore-0.3.0/neonstore/R/neon_table.R |only neonstore-0.3.0/neonstore/R/utilities.R |only neonstore-0.3.0/neonstore/README.md | 299 +++---------- neonstore-0.3.0/neonstore/inst/WORDLIST | 13 neonstore-0.3.0/neonstore/inst/examples |only neonstore-0.3.0/neonstore/inst/img |only neonstore-0.3.0/neonstore/man/neon_db.Rd |only neonstore-0.3.0/neonstore/man/neon_delete_db.Rd |only neonstore-0.3.0/neonstore/man/neon_disconnect.Rd |only neonstore-0.3.0/neonstore/man/neon_index.Rd | 6 neonstore-0.3.0/neonstore/man/neon_pane.Rd |only neonstore-0.3.0/neonstore/man/neon_store.Rd |only neonstore-0.3.0/neonstore/man/neon_table.Rd |only neonstore-0.3.0/neonstore/tests/testthat/test-additional.R | 35 + neonstore-0.3.0/neonstore/tests/testthat/test-api.R | 9 neonstore-0.3.0/neonstore/tests/testthat/test-db.R |only neonstore-0.3.0/neonstore/tests/testthat/test-index.R |only neonstore-0.3.0/neonstore/tests/testthat/test-read.R |only neonstore-0.3.0/neonstore/tests/testthat/test-utils.R |only 32 files changed, 471 insertions(+), 376 deletions(-)
Title: Tools for Generating, Visualizing, and Analysing Link
Communities in Networks
Description: Link communities reveal the nested and overlapping
structure in networks, and uncover the key nodes that form connections
to multiple communities. linkcomm provides a set of tools for
generating, visualizing, and analysing link communities in networks of
arbitrary size and type. The linkcomm package also includes tools for
generating, visualizing, and analysing Overlapping Cluster Generator
(OCG) communities. Kalinka and Tomancak (2011) <10.1093/bioinformatics/btr311>.
Author: Alex T. Kalinka <alex.t.kalinka@gmail.com>, with
contributions from Alain Guenoche
Maintainer: Alex T. Kalinka <alex.t.kalinka@gmail.com>
Diff between linkcomm versions 1.0-12 dated 2020-03-11 and 1.0-13 dated 2020-10-06
linkcomm-1.0-12/linkcomm/inst/doc/linkcomm.R |only linkcomm-1.0-12/linkcomm/inst/doc/linkcomm.Rnw |only linkcomm-1.0-12/linkcomm/vignettes/cluster_relatedness.pdf |only linkcomm-1.0-12/linkcomm/vignettes/custom_graphs.pdf |only linkcomm-1.0-12/linkcomm/vignettes/fig1_vignette.pdf |only linkcomm-1.0-12/linkcomm/vignettes/graph_layout_examples.pdf |only linkcomm-1.0-12/linkcomm/vignettes/linkcomm.Rnw |only linkcomm-1.0-12/linkcomm/vignettes/linkcomm.pdf |only linkcomm-1.0-12/linkcomm/vignettes/networks.rda |only linkcomm-1.0-12/linkcomm/vignettes/nodepie_linkcomm.pdf |only linkcomm-1.0-12/linkcomm/vignettes/ocg_lesmis.pdf |only linkcomm-1.0-13/linkcomm/DESCRIPTION | 31 ++++-- linkcomm-1.0-13/linkcomm/MD5 | 29 ++--- linkcomm-1.0-13/linkcomm/NEWS | 11 ++ linkcomm-1.0-13/linkcomm/R/OCG_main.R | 4 linkcomm-1.0-13/linkcomm/R/linkcomm_misc.R | 4 linkcomm-1.0-13/linkcomm/README.md | 55 ++++++++++- linkcomm-1.0-13/linkcomm/build/vignette.rds |binary linkcomm-1.0-13/linkcomm/inst/doc/linkcomm.pdf.asis |only linkcomm-1.0-13/linkcomm/man/karate.Rd | 2 linkcomm-1.0-13/linkcomm/man/lesmiserables.Rd | 2 linkcomm-1.0-13/linkcomm/vignettes/linkcomm.pdf.asis |only 22 files changed, 101 insertions(+), 37 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-03 0.1.1
2020-09-22 0.1.0
Title: Overdispersion in Count Data Multiple Regression Analysis
Description: Detection of overdispersion in count data for multiple regression analysis.
Log-linear count data regression is one of the most popular techniques for predictive
modeling where there is a non-negative discrete quantitative dependent variable. In
order to ensure the inferences from the use of count data models are appropriate,
researchers may choose between the estimation of a Poisson model and a negative binomial
model, and the correct decision for prediction from a count data estimation is directly
linked to the existence of overdispersion of the dependent variable, conditional to the
explanatory variables. Based on the studies of Cameron and Trivedi (1990)
<doi:10.1016/0304-4076(90)90014-K> and Cameron and Trivedi (2013, ISBN:978-1107667273),
the overdisp() command is a contribution to researchers, providing a fast and secure
solution for the detection of overdispersion in count data. Another advantage is that
the installation of other packages is unnecessary, since the command runs in the basic
R language.
Author: Rafael Freitas Souza [cre],
Luiz Paulo Favero [ctb],
Patricia Belfiore [ctb],
Hamilton Luiz Correa [ctb],
A. Colin Cameron [aut],
Pravin Trivedi [aut]
Maintainer: Rafael Freitas Souza <fsrafael@usp.br>
Diff between overdisp versions 0.1.0 dated 2020-02-16 and 0.1.1 dated 2020-10-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/overdisp.R | 20 +++++++++++++++++--- man/README.Rd | 6 +++++- 4 files changed, 28 insertions(+), 10 deletions(-)
Title: Authentication for 'Shiny' Apps with 'Amazon Cognito'
Description: Provides authentication for Shiny applications using 'Amazon Cognito' ( <https://aws.amazon.com/es/cognito/>).
Author: Pablo Pagnone [aut, cre],
Aleksander Dietrichson [aut]
Maintainer: Pablo Pagnone <pablodp84@gmail.com>
Diff between cognitoR versions 1.0.1 dated 2020-04-15 and 1.0.2 dated 2020-10-06
DESCRIPTION | 17 ++- MD5 | 38 +++++--- NAMESPACE | 3 NEWS.md | 13 +++ R/cognito_add_account.R |only R/cognito_server.R | 48 ++++++++++- R/cognito_ui.R | 6 + R/cookie_server.R | 2 R/cookie_ui.R | 5 - R/get_config.R | 1 R/get_url_auth_redirect.R | 11 ++ README.md | 4 inst/css |only inst/doc/adding_cognitoR_to_your_app.html | 128 +++++++++++++++++------------- inst/examples/cognito-mobile-app.R |only inst/examples/config.yml | 1 inst/examples/cookie-app.R | 17 +++ inst/examples/cookie-mobile-app.R |only inst/sample_config.yml | 1 man/cognito_add_account.Rd |only man/cognito_server.Rd | 15 +++ man/cookie_server.Rd | 8 - 22 files changed, 219 insertions(+), 99 deletions(-)