Title: Create Area-Proportional Venn Diagrams from Biological Lists
Description: Creates an area-proportional Venn diagram of 2 or 3 circles. 'BioVenn' is the only R package that can automatically generate an accurate area-proportional Venn diagram by having only lists of (biological) identifiers as input. Also offers the option to map Entrez and/or Affymetrix IDs to Ensembl IDs. In SVG mode, text and numbers can be dragged and dropped. Based on the BioVenn web interface available at <https://www.biovenn.nl>. Hulsen et al. (2008) <doi:10.1186/1471-2164-9-488>.
Author: Tim Hulsen [aut, cre] (<https://orcid.org/0000-0002-0208-8443>)
Maintainer: Tim Hulsen <thulsen@gmail.com>
Diff between BioVenn versions 1.0.2 dated 2020-09-30 and 1.0.3 dated 2020-10-28
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/draw.venn.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, principal component analysis and correlation matrices,
cluster analyses, scatter plots, stacked scales, effects plots of regression
models (including interaction terms) and much more. This package supports
labelled data.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>),
Carsten Schwemmer [ctb],
Chuck Powell [ctb] (<https://orcid.org/0000-0002-3606-2188>),
Amir Djalovski [ctb],
Johannes Titz [ctb] (<https://orcid.org/0000-0002-1102-5719>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.8.5 dated 2020-09-24 and 2.8.6 dated 2020-10-28
DESCRIPTION | 13 MD5 | 68 +- NAMESPACE | 3 NEWS.md | 12 R/html_print.R | 52 + R/html_print_utils.R | 7 R/plot_model.R | 2 R/plot_type_est.R | 1 R/tab_model.R | 28 - R/tidiers.R | 6 build/vignette.rds |binary inst/doc/blackwhitefigures.html | 170 +++--- inst/doc/custplot.html | 340 ++++++------ inst/doc/plot_interactions.html | 152 +++-- inst/doc/plot_likert_scales.html | 210 ++++--- inst/doc/plot_marginal_effects.html | 174 +++--- inst/doc/plot_model_estimates.html | 312 +++++------ inst/doc/sjtitemanalysis.html | 120 ++-- inst/doc/tab_bayes.html | 182 +++--- inst/doc/tab_mixed.html | 162 +++-- inst/doc/tab_model_estimates.html | 352 ++++++------ inst/doc/tab_model_robust.R | 97 +-- inst/doc/tab_model_robust.Rmd | 9 inst/doc/tab_model_robust.html | 998 ++++-------------------------------- inst/doc/table_css.html | 311 +++++------ man/plot_gpt.Rd | 286 +++++----- man/plot_grpfrq.Rd | 528 +++++++++---------- man/plot_model.Rd | 2 man/plot_models.Rd | 2 man/plot_scatter.Rd | 308 +++++------ man/plot_xtab.Rd | 462 ++++++++-------- man/sjp.aov1.Rd | 234 ++++---- man/sjp.chi2.Rd | 122 ++-- man/tab_model.Rd | 5 vignettes/tab_model_robust.Rmd | 9 35 files changed, 2627 insertions(+), 3112 deletions(-)
Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models
and providing an interface to Partial Least Squares Regression and Linear and
Quadratic Discriminant analysis. Several statistical summaries are extended,
predictions are offered for additional types of analyses, and extra plots, tests
and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve S<e6>b<f8> [aut]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between RcmdrPlugin.NMBU versions 1.8.11 dated 2019-09-09 and 1.8.12 dated 2020-10-28
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/NMBU.Utilities.R | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
More information about RcmdrPlugin.NMBU at CRAN
Permanent link
Title: Partially Separable Quasi-Newton
Description: Provides quasi-Newton methods to minimize partially separable
functions. The methods are largely described by
Nocedal and Wright (2006) <doi:10.1007/978-0-387-40065-5>.
Author: Benjamin Christoffersen [cre, aut]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between psqn versions 0.1.0 dated 2020-10-27 and 0.1.1 dated 2020-10-28
DESCRIPTION | 6 MD5 | 37 +-- R/RcppExports.R | 6 inst/doc/psqn.html | 414 +++++++++++++++++++++--------------------- inst/include/intrapolate.h | 3 inst/include/lp.h | 6 inst/include/psqn-bfgs.h | 2 inst/include/psqn-misc.h | 13 + inst/include/psqn-reporter.h | 23 ++ inst/include/psqn.h | 98 +++++++-- inst/mlogit-ex.cpp | 7 inst/poly-ex.cpp | 5 man/psqn.Rd | 6 src/RcppExports.cpp | 9 src/r-api.cpp | 16 - src/test-lp.cpp | 3 tests/testthat/helper.R |only tests/testthat/test-R-api.R | 14 - tests/testthat/test-cpp-api.R | 15 - tests/testthat/test-poly-ex.R | 2 20 files changed, 405 insertions(+), 280 deletions(-)
Title: Easily Visualize Data from 'ERDDAP' Servers via the 'rerddap'
Package
Description: Easily visualize and animate 'tabledap' and 'griddap' objects obtained via the 'rerddap' package in a simple one-line command, using either base graphics or 'ggplot2' graphics. 'plotdap' handles extracting and reshaping the data, map projections and continental outlines. Optionally the data can be animated through time using the 'gganmiate' package.
Author: Carson Sievert [aut],
Roy Mendelssohn [aut, ctb, cre]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between plotdap versions 0.0.8 dated 2020-10-23 and 0.0.9 dated 2020-10-28
DESCRIPTION | 8 MD5 | 14 - NEWS.md | 4 inst/doc/using_plotdap.R | 169 ++++++++------------ inst/doc/using_plotdap.Rmd | 42 +---- inst/doc/using_plotdap.html | 359 ++++++++++++++++++++------------------------ vignettes/soda70.png |only vignettes/using_plotdap.Rmd | 42 +---- vignettes/winds.png |only 9 files changed, 274 insertions(+), 364 deletions(-)
Title: Miscellaneous Functions for Passive Acoustic Analysis
Description: A collection of miscellaneous functions for passive acoustics.
Much of the content here is adapted to R from code written by other people.
If you have any ideas of functions to add, please contact Taiki Sakai.
Author: Taiki Sakai [aut, cre],
Jay Barlow [ctb],
Julie Oswald [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>
Diff between PAMmisc versions 1.6.3 dated 2020-10-22 and 1.6.5 dated 2020-10-28
DESCRIPTION | 8 +++---- MD5 | 22 ++++++++++--------- NAMESPACE | 7 ++++++ NEWS.md | 12 ++++++++++ R/addPgGps.R | 44 +++++++++++++++++++++++++++++++-------- R/ncUtils.R | 1 R/updateUID.R |only data/erddapList.RData |binary inst/extdata/PgDb.sqlite3 |binary man/addPgGps.Rd | 5 +++- man/updateUID.Rd |only tests/testthat/test-envdata.R | 14 ++++++------ tests/testthat/test-pgDatabase.R | 33 ++++++++++++++++++++++------- 13 files changed, 107 insertions(+), 39 deletions(-)
Title: Multiple Pairwise Comparison Tests
Description: Multiple pairwise comparison tests on tidy data for
one-way analysis of variance for both between-subjects and
within-subjects designs. Currently, it supports only the most common
types of statistical analyses and tests: parametric (Welch's and
Student's t-test), nonparametric (Durbin-Conover and Dunn test),
robust (Yuen’s trimmed means test), and Bayes Factor (Student's
t-test).
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between pairwiseComparisons versions 3.0.0 dated 2020-10-06 and 3.1.0 dated 2020-10-28
pairwiseComparisons-3.0.0/pairwiseComparisons/R/pairwise_caption_helpers.R |only pairwiseComparisons-3.1.0/pairwiseComparisons/DESCRIPTION | 14 pairwiseComparisons-3.1.0/pairwiseComparisons/MD5 | 33 pairwiseComparisons-3.1.0/pairwiseComparisons/NAMESPACE | 7 pairwiseComparisons-3.1.0/pairwiseComparisons/NEWS.md | 8 pairwiseComparisons-3.1.0/pairwiseComparisons/R/global_vars.R | 208 ----- pairwiseComparisons-3.1.0/pairwiseComparisons/R/helpers.R | 124 ++- pairwiseComparisons-3.1.0/pairwiseComparisons/R/pairwise_comparisons.R | 20 pairwiseComparisons-3.1.0/pairwiseComparisons/R/reexports.R | 4 pairwiseComparisons-3.1.0/pairwiseComparisons/README.md | 391 ++++++---- pairwiseComparisons-3.1.0/pairwiseComparisons/inst/WORDLIST | 45 - pairwiseComparisons-3.1.0/pairwiseComparisons/man/figures/README-ggsignif2-1.png |binary pairwiseComparisons-3.1.0/pairwiseComparisons/man/p_adjust_text.Rd | 2 pairwiseComparisons-3.1.0/pairwiseComparisons/man/pairwise_caption.Rd | 2 pairwiseComparisons-3.1.0/pairwiseComparisons/man/pairwise_comparisons.Rd | 12 pairwiseComparisons-3.1.0/pairwiseComparisons/man/reexports.Rd | 3 pairwiseComparisons-3.1.0/pairwiseComparisons/tests/testthat/test-pairwise_comparisons_between.R | 12 pairwiseComparisons-3.1.0/pairwiseComparisons/tests/testthat/test-pairwise_comparisons_within.R | 108 ++ 18 files changed, 528 insertions(+), 465 deletions(-)
More information about pairwiseComparisons at CRAN
Permanent link
Title: Toolbox for ECH with R
Description: R toolbox for the processing of the Encuesta Continua de Hogares (ECH) from Uruguay
at <http://www.ine.gub.uy/encuesta-continua-de-hogares1> conducted by the
Instituto Nacional de Estadistica (INE).
Author: Gabriela Mathieu [aut, cre] (<https://orcid.org/0000-0003-3965-9024>),
Richard Detomasi [aut] (<https://orcid.org/0000-0002-6725-0261>),
Tati Micheletti [ctb] (<https://orcid.org/0000-0003-4838-8342>),
Instituto Nacional de Estadistica, Uruguay (INE) [dtc]
Maintainer: Gabriela Mathieu <calcita@gmx.li>
Diff between ech versions 0.1.0 dated 2020-09-18 and 0.1.1 dated 2020-10-28
ech-0.1.0/ech/R/add_geom.R |only ech-0.1.0/ech/R/plot_geouy.R |only ech-0.1.1/ech/DESCRIPTION | 12 ech-0.1.1/ech/MD5 | 50 +-- ech-0.1.1/ech/NAMESPACE | 7 ech-0.1.1/ech/NEWS.md | 6 ech-0.1.1/ech/R/get_dictionary.R | 1 ech-0.1.1/ech/R/get_estimation.R | 156 ++++----- ech-0.1.1/ech/R/get_microdata.R | 1 ech-0.1.1/ech/R/poverty.R | 79 +++- ech-0.1.1/ech/R/utils.R | 233 +++++++------- ech-0.1.1/ech/README.md | 5 ech-0.1.1/ech/data/dic.rda |binary ech-0.1.1/ech/inst/doc/Educacion.html | 324 ++++++++++++++++--- ech-0.1.1/ech/inst/doc/ech.html | 394 ++++++++++++++++++------ ech-0.1.1/ech/inst/doc/estimacion_ingresos.html | 326 ++++++++++++++++--- ech-0.1.1/ech/inst/doc/medicion_pobreza.html | 378 ++++++++++++++++++----- ech-0.1.1/ech/inst/tutorials |only ech-0.1.1/ech/man/add_geom.Rd | 50 --- ech-0.1.1/ech/man/archive_extract.Rd | 1 ech-0.1.1/ech/man/dates_ech.Rd |only ech-0.1.1/ech/man/get_cba_cbna.Rd | 8 ech-0.1.1/ech/man/get_ipab.Rd | 6 ech-0.1.1/ech/man/get_ipab_region.Rd | 8 ech-0.1.1/ech/man/get_ipc_region.Rd | 5 ech-0.1.1/ech/man/plot_geouy.Rd | 46 -- ech-0.1.1/ech/man/unlabelled.Rd | 3 ech-0.1.1/ech/man/unsatisfied_basic_needs.Rd | 8 28 files changed, 1487 insertions(+), 620 deletions(-)
Title: Estimate Ensemble Bayesian Model Averaging Forecasts using Gibbs
Sampling or EM-Algorithms
Description: Create forecasts from multiple predictions using ensemble Bayesian model averaging (EBMA). EBMA models can be estimated using an expectation maximization (EM) algorithm or as fully Bayesian models via Gibbs sampling. The methods in this package are Montgomery, Hollenbach, and Ward (2015) <doi:10.1016/j.ijforecast.2014.08.001> and Montgomery, Hollenbach, and Ward (2012) <doi:10.1093/pan/mps002>.
Author: Florian M. Hollenbach [aut, cre]
(<https://orcid.org/0000-0002-9599-556X>),
Jacob M. Montgomery [aut],
Michael D. Ward [aut]
Maintainer: Florian M. Hollenbach <fhollenbach@tamu.edu>
Diff between EBMAforecast versions 1.0.0 dated 2020-05-20 and 1.0.2 dated 2020-10-28
DESCRIPTION | 12 ++--- MD5 | 18 ++++---- R/calibrateEnsemble.R | 10 ++-- R/fitEnsembleLogit.R | 4 - R/fitEnsembleNormal.R | 93 ++++++++++++++++++++++++++-------------------- R/predictNormal.R | 24 +++++------ man/calibrateEnsemble.Rd | 12 ++--- src/Samplers.cpp | 60 +++++++++++++++-------------- tests/testthat/Rplots.pdf |binary tests/testthat/testthat.R | 8 +-- 10 files changed, 127 insertions(+), 114 deletions(-)
Title: Tools for Choice Model Estimation and Application
Description: The Choice Modelling Centre (CMC) at the University of Leeds
has developed flexible code for the estimation and application
of choice models in R. Users are able to write their own
model functions or use a mix of already available ones. Random heterogeneity,
both continuous and discrete and at the level of individuals and
choices, can be incorporated for all models. There is support for both standalone
models and hybrid model structures. Both classical
and Bayesian estimation is available, and multiple discrete
continuous models are covered in addition to discrete choice.
Multi-threading processing is supported for estimation and a large
number of pre and post-estimation routines, including for computing posterior
(individual-level) distributions are available.
For examples, a manual, and a support forum, visit
www.ApolloChoiceModelling.com. For more information on choice
models see Train, K. (2009) <isbn:978-0-521-74738-7> and Hess,
S. & Daly, A.J. (2014) <isbn:978-1-781-00314-5> for an overview
of the field.
Author: Stephane Hess [aut],
David Palma [aut, cre]
Maintainer: David Palma <D.Palma@leeds.ac.uk>
Diff between apollo versions 0.2.0 dated 2020-10-19 and 0.2.1 dated 2020-10-28
DESCRIPTION | 6 ++-- MD5 | 22 ++++++++--------- R/apollo_estimate.R | 19 +++++++-------- R/apollo_insertScaling.R | 15 ++++++++++- R/apollo_lcEM.R | 49 +++++++++++++++++++++++---------------- R/apollo_makeLogLike.R | 31 ++++++++++++------------ R/apollo_outOfSample.R | 4 +-- R/apollo_searchStart.R | 8 +++--- R/apollo_varList.R | 4 ++- R/apollo_varcov.R | 5 ++- inst/doc/apollofirstexample.html | 18 +++++++------- man/apollo_insertScaling.Rd | 4 ++- 12 files changed, 107 insertions(+), 78 deletions(-)
Title: Encapsulated Classes with Reference Semantics
Description: Creates classes with reference semantics, similar to R's built-in
reference classes. Compared to reference classes, R6 classes are simpler
and lighter-weight, and they are not built on S4 classes so they do not
require the methods package. These classes allow public and private
members, and they support inheritance, even when the classes are defined in
different packages.
Author: Winston Chang [aut, cre]
Maintainer: Winston Chang <winston@stdout.org>
Diff between R6 versions 2.4.1 dated 2019-11-12 and 2.5.0 dated 2020-10-28
DESCRIPTION | 6 MD5 | 16 - NEWS.md | 37 ++- R/clone.R | 21 +- R/new.R | 5 R/print.R | 2 README.md | 2 man/figures |only tests/testthat/test-clone.R | 447 +++++++++++++++++++++++++++++++++++++++++++- 9 files changed, 499 insertions(+), 37 deletions(-)
Title: Epilepsy Ontologies' Similarities
Description: Analysis and visualization of similarities between epilepsy ontologies based on text mining results by comparing ranked lists of co-occurring drug terms in the corpus of LIVIVO. The ranked result lists of neurological drug terms co-occurring with named entities from the epilepsy ontologies EpSO, ESSO, and EPILONT are aggregated in order to generate two different results: an overview table of drugs that are relevant to epilepsy created with the method createNeuroTable, and a plot of tanimoto similarity coefficients between the aggregated list of drug terms against the list of drug terms from each of the ontologies created with the method createTanimotoBaseline(). The alignment of the Top-K Ranked Lists is conducted using the R-package TopKLists <https://cran.r-project.org/package=TopKLists>. The source data to create the ranked lists of drug names is produced using the text mining workflows described in Mueller, Bernd and Hagelstein, Alexandra (2016) <doi:10.4126/FRL01-006408558> and Mueller, Bernd et al. (2017) <doi:10.1007/978-3-319-58694-6_22>.
Author: Bernd Mueller
Maintainer: Bernd Mueller <bernd.mueller@zbmed.de>
Diff between epos versions 0.1.1 dated 2020-05-05 and 0.1.2 dated 2020-10-28
epos-0.1.1/epos/data/rawDrugBankCoOcEPILONT.rda |only epos-0.1.1/epos/data/rawDrugBankCoOcESSO.rda |only epos-0.1.1/epos/data/rawDrugBankCoOcEpSO.rda |only epos-0.1.1/epos/inst/extdata/drugbankatc-fourthlevel.map |only epos-0.1.1/epos/inst/extdata/drugbankatc-secondlevel.map |only epos-0.1.1/epos/inst/extdata/drugbankatc-thirdlevel.map |only epos-0.1.1/epos/man/rawDrugBankCoOcEPILONT.Rd |only epos-0.1.1/epos/man/rawDrugBankCoOcESSO.Rd |only epos-0.1.1/epos/man/rawDrugBankCoOcEpSO.Rd |only epos-0.1.2/epos/DESCRIPTION | 14 epos-0.1.2/epos/MD5 | 85 epos-0.1.2/epos/NAMESPACE | 4 epos-0.1.2/epos/R/calcEnrichment.R |only epos-0.1.2/epos/R/data.R | 99 epos-0.1.2/epos/R/doThePlotDrugVectors.R | 22 epos-0.1.2/epos/R/main.R | 14 epos-0.1.2/epos/R/mongoReader.R |only epos-0.1.2/epos/R/processATC.R | 27 epos-0.1.2/epos/R/writeNeuroTable.R | 150 epos-0.1.2/epos/README.md | 8 epos-0.1.2/epos/data/rawDrugNamesCoOcEPILONT.rda |only epos-0.1.2/epos/data/rawDrugNamesCoOcEPISEM.rda |only epos-0.1.2/epos/data/rawDrugNamesCoOcESSO.rda |only epos-0.1.2/epos/data/rawDrugNamesCoOcEpSO.rda |only epos-0.1.2/epos/data/rawDrugNamesCoOcFENICS.rda |only epos-0.1.2/epos/inst/extdata/atc-fourthlevel.map |only epos-0.1.2/epos/inst/extdata/atc-secondlevel.map |only epos-0.1.2/epos/inst/extdata/atc-thirdlevel.map |only epos-0.1.2/epos/inst/extdata/db-atc.map | 5437 +++++----- epos-0.1.2/epos/man/calcEnrichment.Rd |only epos-0.1.2/epos/man/createBaseTable.Rd | 46 epos-0.1.2/epos/man/createJaccardPlotMeSHFive.Rd | 9 epos-0.1.2/epos/man/createNeuroTable.Rd | 12 epos-0.1.2/epos/man/createTanimotoBaseline.Rd | 24 epos-0.1.2/epos/man/doFullPlot.Rd | 14 epos-0.1.2/epos/man/filterApprovedDrugs.Rd | 6 epos-0.1.2/epos/man/filterNeuroDrugs.Rd | 6 epos-0.1.2/epos/man/genDictListFromRawFreq.Rd | 15 epos-0.1.2/epos/man/getTermMatrix.Rd |only epos-0.1.2/epos/man/plotEnrichment.Rd |only epos-0.1.2/epos/man/rawDrugNamesCoOcEPILONT.Rd |only epos-0.1.2/epos/man/rawDrugNamesCoOcEPISEM.Rd |only epos-0.1.2/epos/man/rawDrugNamesCoOcESSO.Rd |only epos-0.1.2/epos/man/rawDrugNamesCoOcEpSO.Rd |only epos-0.1.2/epos/man/rawDrugNamesCoOcFENICS.Rd |only epos-0.1.2/epos/man/readAtcMapIntoHashMapAtcCodesAtcNames.Rd | 2 epos-0.1.2/epos/man/readAtcMapIntoHashMapDrugNamesAtcCodes.Rd | 2 epos-0.1.2/epos/man/readSecondLevelATC.Rd | 8 epos-0.1.2/epos/tests/testthat/test_createBaseTable.R | 14 epos-0.1.2/epos/tests/testthat/test_createNeuroTable.R | 12 epos-0.1.2/epos/tests/testthat/test_createTanimotoBaseline.R | 10 epos-0.1.2/epos/tests/testthat/test_filterApprovedDrugs.R | 6 epos-0.1.2/epos/tests/testthat/test_filterNeuroDrugs.R | 6 epos-0.1.2/epos/tests/testthat/test_genDictListFromRawFreq.R | 6 epos-0.1.2/epos/tests/testthat/test_readAtcMapIntoHashMapAtcCodesAtcNames.R | 2 epos-0.1.2/epos/tests/testthat/test_readAtcMapIntoHashMapDrugNamesAtcCodes.R | 2 epos-0.1.2/epos/tests/testthat/test_readSecondLevelATC.R | 2 57 files changed, 3541 insertions(+), 2523 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-26 1.3.6
2016-09-10 1.3.3
2016-04-09 1.3.1
2014-09-16 1.2.3
2014-09-09 1.2.1
2014-07-10 1.0.1
2014-06-22 0.99.5
2014-06-20 0.99.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-23 2019.1-23
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2018-01-31 2018.1-31
2015-06-24 2015.6-24
2014-11-04 2014.11-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-05-18 1.2
2008-03-02 1.0
2006-11-30 0.1-4
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2015-08-16 1.1.0
2015-04-30 1.0.2
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2013-08-12 8.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-25 1.0
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2018-05-27 1.0.0
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2017-06-29 0.1.4
2016-05-25 0.1.3
2016-05-17 0.1.2
2016-05-14 0.1.1
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2018-09-11 0.2.0.1
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2019-03-15 2.0.4
2019-02-06 2.0.3
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2018-07-29 1.1.3
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2017-04-07 0.5
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2017-03-31 0.2
2017-03-24 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-24 1.0.1
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2014-07-28 1.1.1
2014-07-26 1.1.0
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-05 0.9
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2013-07-31 1.0
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2008-11-08 0.1
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2013-09-14 2.2.6
2012-12-04 2.2.5
2012-11-12 2.2.4
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2012-09-06 2.2.2
2012-04-01 2.2.1
2010-12-13 2.2.0
2010-10-23 2.0.0
2010-08-30 1.0.0
2010-04-27 0.5.0
2009-11-12 0.4.0
2009-11-01 0.3.0
2009-08-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2013-04-27 0.9.8
2013-04-16 0.9.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-02 1.0.1.0
2017-03-17 1.0.0.2
2016-06-04 1.0.0.1
2016-05-19 1.0.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-08 0.90.3
2011-07-30 0.90.2
2011-06-22 0.90.1
2011-03-29 0.90
2010-02-14 0.82
2009-08-13 0.81
2009-07-18 0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-22 1.7.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-07 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-17 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-04 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-26 1.2.4
2017-09-19 1.2.2
2017-08-31 1.1.0
2017-02-01 0.2.0
2016-12-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-10 1.2-3
2011-09-20 1.2-2
2010-11-17 1.2
2009-02-16 1.1
2008-12-16 1.0
2006-10-02 0.9-3
Title: Kantorovich Distance Between Probability Measures
Description: Computes the Kantorovich distance between two probability measures on a finite set. The Kantorovich distance is also known as the Monge-Kantorovich distance or the first Wasserstein distance.
Author: Stéphane Laurent
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between kantorovich versions 2.0.1 dated 2020-08-26 and 3.0.0 dated 2020-10-28
DESCRIPTION | 12 +++--- MD5 | 21 ++++++---- NAMESPACE | 3 + NEWS.md | 13 ++++-- R/kantorovich_CVX.R |only R/kantorovich_glpk.R | 7 ++- README.md | 4 +- inst/doc/kantorovich.R | 2 + inst/doc/kantorovich.Rmd | 11 ++++- inst/doc/kantorovich.html | 91 ++++++++++++++++++++++++++++++++++++++++++---- man/kantorovich_CVX.Rd |only tests/testthat/test-CVX.R |only vignettes/kantorovich.Rmd | 11 ++++- 13 files changed, 138 insertions(+), 37 deletions(-)
Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta
diversity in all their dimensions (taxon, phylogenetic and functional
diversity), whether communities are completely sampled or not. It allows
performing a number of analyses based on either species identities or
phylogenetic/functional trees or functional kernel n-dimensional hypervolumes
depicting species relationships.
Author: Pedro Cardoso, Stefano Mammola, Francois Rigal, Jose Carlos Carvalho
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between BAT versions 2.2.1 dated 2020-10-16 and 2.3.0 dated 2020-10-28
DESCRIPTION | 12 - MD5 | 27 +- NAMESPACE | 6 R/BAT.R | 422 +++++++++++++++++++++++++++++++++++++------- man/beta.evenness.Rd |only man/evenness.Rd | 14 - man/hull.alpha.Rd |only man/hull.beta.Rd |only man/hull.contribution.Rd |only man/kernel.alpha.Rd | 4 man/kernel.beta.Rd | 4 man/kernel.beta.evenness.Rd |only man/kernel.contribution.Rd | 4 man/kernel.dispersion.Rd | 9 man/kernel.evenness.Rd | 4 man/kernel.originality.Rd | 4 man/kernel.similarity.Rd | 4 17 files changed, 413 insertions(+), 101 deletions(-)
Title: Analysis of Quaternary Science Data
Description: Constrained clustering, transfer functions, and other methods for analysing Quaternary science data.
Author: Steve Juggins
Maintainer: Steve Juggins <Stephen.Juggins@ncl.ac.uk>
Diff between rioja versions 0.9-21 dated 2019-04-24 and 0.9-26 dated 2020-10-28
DESCRIPTION | 14 +- MD5 | 39 ++++--- R/MLRC.r | 6 - R/strat.plot.r | 267 +++++++++++++++++++++++++++++++++----------------- R/zzz.r | 5 build/partial.rdb |binary inst/CITATION | 8 - inst/ChangeLog | 17 +++ inst/riojaPlot |only man/chclust.Rd | 7 - man/interp.dataset.Rd | 4 man/strat.plot.Rd | 42 ++++--- src/chclust.cpp | 12 -- src/mat.cpp | 6 - src/mat.h | 2 src/mlrc.cpp | 24 ++-- 16 files changed, 285 insertions(+), 168 deletions(-)
Title: Age-Depth Modelling using Bayesian Statistics
Description: An approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information. See Blaauw & Christen (2011) <doi:10.1214/11-BA618>.
Author: Maarten Blaauw [aut, cre],
J. Andres Christen [aut, ctb, cph],
Marco A. Aquino L. [aut],
Judith Esquivel Vazquez [ctb],
Oscar M. Gonzalez V. [ctb],
Ted Belding [cph],
James Theiler [cph],
Brian Gough [cph],
Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rbacon versions 2.4.3 dated 2020-08-10 and 2.5.0 dated 2020-10-28
rbacon-2.4.3/rbacon/inst/extdata/Cores/MSB2K/MSB2K_20.bacon |only rbacon-2.4.3/rbacon/inst/extdata/Cores/MSB2K/MSB2K_20.out |only rbacon-2.4.3/rbacon/inst/extdata/Cores/MSB2K/MSB2K_20_ages.txt |only rbacon-2.4.3/rbacon/inst/extdata/Curves |only rbacon-2.4.3/rbacon/man/age.pMC.Rd |only rbacon-2.4.3/rbacon/man/copyCalibrationCurve.Rd |only rbacon-2.4.3/rbacon/man/mix.curves.Rd |only rbacon-2.4.3/rbacon/man/pMC.age.Rd |only rbacon-2.5.0/rbacon/DESCRIPTION | 10 rbacon-2.5.0/rbacon/MD5 | 76 +-- rbacon-2.5.0/rbacon/NAMESPACE | 6 rbacon-2.5.0/rbacon/NEWS.md | 24 - rbacon-2.5.0/rbacon/R/Bacon.R | 86 ++-- rbacon-2.5.0/rbacon/R/accrate.R | 68 ++- rbacon-2.5.0/rbacon/R/agedepth.R | 14 rbacon-2.5.0/rbacon/R/calc.R | 168 ++++++++ rbacon-2.5.0/rbacon/R/calibrate.R | 195 +--------- rbacon-2.5.0/rbacon/R/internal_plots.R | 7 rbacon-2.5.0/rbacon/R/plots.R | 11 rbacon-2.5.0/rbacon/R/read_write.R | 12 rbacon-2.5.0/rbacon/R/read_write_plum.R | 4 rbacon-2.5.0/rbacon/inst/extdata/Cores/MSB2K/MSB2K_21.bacon |only rbacon-2.5.0/rbacon/inst/extdata/Cores/MSB2K/MSB2K_21.out |only rbacon-2.5.0/rbacon/inst/extdata/Cores/MSB2K/MSB2K_21_ages.txt |only rbacon-2.5.0/rbacon/man/Bacon.Age.d.Rd | 4 rbacon-2.5.0/rbacon/man/Bacon.Rd | 17 rbacon-2.5.0/rbacon/man/Bacon.d.Age.Rd |only rbacon-2.5.0/rbacon/man/accrate.age.Rd | 10 rbacon-2.5.0/rbacon/man/accrate.age.ghost.Rd | 7 rbacon-2.5.0/rbacon/man/accrate.depth.ghost.Rd | 7 rbacon-2.5.0/rbacon/man/agedepth.Rd | 20 - rbacon-2.5.0/rbacon/man/calib.plot.Rd | 6 rbacon-2.5.0/rbacon/man/flux.age.ghost.Rd | 6 rbacon-2.5.0/rbacon/man/proxy.ghost.Rd | 12 rbacon-2.5.0/rbacon/src/bacon.cpp | 7 rbacon-2.5.0/rbacon/src/bacon.h | 20 - rbacon-2.5.0/rbacon/src/input.cpp | 9 rbacon-2.5.0/rbacon/src/input.h | 1 rbacon-2.5.0/rbacon/src/kernel.cpp | 39 -- rbacon-2.5.0/rbacon/src/ranfun.cpp | 12 rbacon-2.5.0/rbacon/src/twalk.h | 161 ++++---- 41 files changed, 560 insertions(+), 459 deletions(-)
Title: R Client for the Microsoft Cognitive Services 'Text-to-Speech'
REST API
Description: R Client for the Microsoft Cognitive Services
'Text-to-Speech' REST API, including voice synthesis. A valid account
must be registered at the Microsoft Cognitive Services website
<https://azure.microsoft.com/services/cognitive-services/> in order to
obtain a (free) API key. Without an API key, this package will not
work properly.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between mscstts versions 0.6.1 dated 2020-10-03 and 0.6.2 dated 2020-10-28
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-locales.R | 3 ++- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Sequential Parameter Optimization Toolbox
Description: A set of tools for model based optimization and tuning of
algorithms. It includes surrogate models, optimizers, and design of experiment
approaches. The main interface is spot, which uses sequentially updated
surrogate models for the purpose of efficient optimization. The main goal is
to ease the burden of objective function evaluations, when a single evaluation
requires a significant amount of resources.
Author: Thomas Bartz-Beielstein [aut, cre],
Joerg Stork [aut],
Martin Zaefferer [aut],
Margarita Rebolledo [ctb],
Christian Lasarczyk [ctb],
Frederik Rehbach [aut]
Maintainer: Thomas Bartz-Beielstein <tbb@bartzundbartz.de>
Diff between SPOT versions 2.0.6 dated 2020-06-17 and 2.1.2 dated 2020-10-28
SPOT-2.0.6/SPOT/NEWS |only SPOT-2.0.6/SPOT/R/cyclone.R |only SPOT-2.1.2/SPOT/DESCRIPTION | 23 SPOT-2.1.2/SPOT/MD5 | 420 - SPOT-2.1.2/SPOT/NAMESPACE | 272 SPOT-2.1.2/SPOT/NEWS.md |only SPOT-2.1.2/SPOT/R/buildCVModel.R | 311 - SPOT-2.1.2/SPOT/R/buildEnsembleStack.R | 248 SPOT-2.1.2/SPOT/R/buildKrigingDACE.R | 2903 +++++----- SPOT-2.1.2/SPOT/R/buildKrigingForrester.R | 1298 ++-- SPOT-2.1.2/SPOT/R/buildLM.R | 256 SPOT-2.1.2/SPOT/R/buildLOESS.R | 276 SPOT-2.1.2/SPOT/R/buildRSM.R | 447 - SPOT-2.1.2/SPOT/R/buildRandomForest.R | 172 SPOT-2.1.2/SPOT/R/buildRanger.R | 212 SPOT-2.1.2/SPOT/R/buildTree.R |only SPOT-2.1.2/SPOT/R/dataGasSensor.R | 86 SPOT-2.1.2/SPOT/R/designLHD.R | 325 - SPOT-2.1.2/SPOT/R/designUniformRandom.R | 132 SPOT-2.1.2/SPOT/R/duplicateHandling.R | 101 SPOT-2.1.2/SPOT/R/evaluate.R | 95 SPOT-2.1.2/SPOT/R/funContinuous.R | 179 SPOT-2.1.2/SPOT/R/funCyclone.R |only SPOT-2.1.2/SPOT/R/funExternal.R |only SPOT-2.1.2/SPOT/R/funMarkovChain.R |only SPOT-2.1.2/SPOT/R/funOptimLecture.R | 56 SPOT-2.1.2/SPOT/R/funSring.R |only SPOT-2.1.2/SPOT/R/infill.R | 60 SPOT-2.1.2/SPOT/R/infillExpectedImprovement.R | 52 SPOT-2.1.2/SPOT/R/infillGetFullPrediction.R | 22 SPOT-2.1.2/SPOT/R/initialInputCheck.R | 499 - SPOT-2.1.2/SPOT/R/modelMarkovChain.R |only SPOT-2.1.2/SPOT/R/optimDE.R | 209 SPOT-2.1.2/SPOT/R/optimES.R | 1590 ++--- SPOT-2.1.2/SPOT/R/optimGenoud.R | 124 SPOT-2.1.2/SPOT/R/optimLBFGSB.R | 117 SPOT-2.1.2/SPOT/R/optimNLOPTR.R | 169 SPOT-2.1.2/SPOT/R/package.R | 102 SPOT-2.1.2/SPOT/R/plotFunction.R | 296 - SPOT-2.1.2/SPOT/R/plotModel.R | 246 SPOT-2.1.2/SPOT/R/plotSingleDimFunction.R | 80 SPOT-2.1.2/SPOT/R/repeatsOCBA.R | 304 - SPOT-2.1.2/SPOT/R/resSpot.R |only SPOT-2.1.2/SPOT/R/resSpot2.R |only SPOT-2.1.2/SPOT/R/satter.R | 80 SPOT-2.1.2/SPOT/R/selectAll.R |only SPOT-2.1.2/SPOT/R/selectN.R |only SPOT-2.1.2/SPOT/R/simulateKriging.R | 631 +- SPOT-2.1.2/SPOT/R/spot.R | 726 +- SPOT-2.1.2/SPOT/R/spotTools.R |only SPOT-2.1.2/SPOT/R/sringRes1.R |only SPOT-2.1.2/SPOT/R/sringRes2.R |only SPOT-2.1.2/SPOT/R/sringRes3.R |only SPOT-2.1.2/SPOT/R/wrapper.R | 302 - SPOT-2.1.2/SPOT/build |only SPOT-2.1.2/SPOT/data/resSpot.rda |only SPOT-2.1.2/SPOT/data/resSpot2.rda |only SPOT-2.1.2/SPOT/data/sringRes1.rda |only SPOT-2.1.2/SPOT/data/sringRes2.rda |only SPOT-2.1.2/SPOT/data/sringRes3.rda |only SPOT-2.1.2/SPOT/inst/CITATION | 36 SPOT-2.1.2/SPOT/inst/consoleCallTrialScript.R | 16 SPOT-2.1.2/SPOT/inst/doc |only SPOT-2.1.2/SPOT/man/OCBA.Rd | 84 SPOT-2.1.2/SPOT/man/SPOT-package.Rd | 110 SPOT-2.1.2/SPOT/man/buildCVModel.Rd | 55 SPOT-2.1.2/SPOT/man/buildEnsembleStack.Rd | 108 SPOT-2.1.2/SPOT/man/buildKriging.Rd | 236 SPOT-2.1.2/SPOT/man/buildKrigingDACE.Rd | 134 SPOT-2.1.2/SPOT/man/buildLM.Rd | 104 SPOT-2.1.2/SPOT/man/buildLOESS.Rd | 100 SPOT-2.1.2/SPOT/man/buildRSM.Rd | 100 SPOT-2.1.2/SPOT/man/buildRandomForest.Rd | 90 SPOT-2.1.2/SPOT/man/buildRanger.Rd | 98 SPOT-2.1.2/SPOT/man/buildTreeModel.Rd |only SPOT-2.1.2/SPOT/man/calculationBarthMuschelknautz.Rd | 48 SPOT-2.1.2/SPOT/man/calculationMothes.Rd | 44 SPOT-2.1.2/SPOT/man/checkArrival.Rd |only SPOT-2.1.2/SPOT/man/checkForNAs.Rd | 38 SPOT-2.1.2/SPOT/man/checkFunEvalsDesignSize.Rd | 46 SPOT-2.1.2/SPOT/man/checkInputDimensionsionalityCorrect.Rd | 38 SPOT-2.1.2/SPOT/man/checkInputTypesInControl.Rd | 30 SPOT-2.1.2/SPOT/man/checkLowerNotEqualsUpper.Rd | 36 SPOT-2.1.2/SPOT/man/checkLowerSmallerThanUpper.Rd | 34 SPOT-2.1.2/SPOT/man/checkTypesOfInput.Rd | 42 SPOT-2.1.2/SPOT/man/checkVerbosityLevels.Rd |only SPOT-2.1.2/SPOT/man/corrcubic.Rd | 72 SPOT-2.1.2/SPOT/man/correxp.Rd | 72 SPOT-2.1.2/SPOT/man/correxpg.Rd | 72 SPOT-2.1.2/SPOT/man/corrgauss.Rd | 72 SPOT-2.1.2/SPOT/man/corrkriging.Rd | 70 SPOT-2.1.2/SPOT/man/corrlin.Rd | 72 SPOT-2.1.2/SPOT/man/corrnoisygauss.Rd | 70 SPOT-2.1.2/SPOT/man/corrnoisykriging.Rd | 70 SPOT-2.1.2/SPOT/man/corrspherical.Rd | 72 SPOT-2.1.2/SPOT/man/corrspline.Rd | 72 SPOT-2.1.2/SPOT/man/daceEvalFit.Rd | 46 SPOT-2.1.2/SPOT/man/daceFixTheta.Rd | 64 SPOT-2.1.2/SPOT/man/daceGetFit.Rd | 84 SPOT-2.1.2/SPOT/man/daceLikelihood.Rd | 50 SPOT-2.1.2/SPOT/man/daceObjfunc.Rd | 78 SPOT-2.1.2/SPOT/man/dacePrepareFit.Rd | 68 SPOT-2.1.2/SPOT/man/daceStartParameters.Rd | 62 SPOT-2.1.2/SPOT/man/dataGasSensor.Rd | 99 SPOT-2.1.2/SPOT/man/descentSpotRSM.Rd | 52 SPOT-2.1.2/SPOT/man/designLHD.Rd | 106 SPOT-2.1.2/SPOT/man/designLHDNorm.Rd | 84 SPOT-2.1.2/SPOT/man/designUniformRandom.Rd | 84 SPOT-2.1.2/SPOT/man/diff0.Rd |only SPOT-2.1.2/SPOT/man/duplicateAndReplicateHandling.Rd | 67 SPOT-2.1.2/SPOT/man/evalMarkovChain.Rd |only SPOT-2.1.2/SPOT/man/evaluateModel.Rd | 50 SPOT-2.1.2/SPOT/man/expectedImprovement.Rd | 64 SPOT-2.1.2/SPOT/man/funBBOBCall.Rd |only SPOT-2.1.2/SPOT/man/funBranin.Rd | 44 SPOT-2.1.2/SPOT/man/funCosts.Rd |only SPOT-2.1.2/SPOT/man/funCyclone.Rd | 126 SPOT-2.1.2/SPOT/man/funMarkovChain.Rd |only SPOT-2.1.2/SPOT/man/funOptimLecture.Rd | 34 SPOT-2.1.2/SPOT/man/funRosen.Rd | 55 SPOT-2.1.2/SPOT/man/funRosen2.Rd |only SPOT-2.1.2/SPOT/man/funSphere.Rd | 44 SPOT-2.1.2/SPOT/man/funSring.Rd |only SPOT-2.1.2/SPOT/man/generateMCPrediction.Rd |only SPOT-2.1.2/SPOT/man/getCorrelationMatrix.Rd | 50 SPOT-2.1.2/SPOT/man/getCosts.Rd |only SPOT-2.1.2/SPOT/man/infillExpectedImprovement.Rd | 58 SPOT-2.1.2/SPOT/man/infillGetFullPrediction.Rd | 40 SPOT-2.1.2/SPOT/man/init_ring.Rd |only SPOT-2.1.2/SPOT/man/initialInputCheck.Rd | 62 SPOT-2.1.2/SPOT/man/krigingLikelihood.Rd | 88 SPOT-2.1.2/SPOT/man/linearAdaptedSE.Rd | 44 SPOT-2.1.2/SPOT/man/maxNearestNeighbourDistance.Rd | 36 SPOT-2.1.2/SPOT/man/modelMarkovChain.Rd |only SPOT-2.1.2/SPOT/man/normalizeMatrix.Rd | 50 SPOT-2.1.2/SPOT/man/normalizeMatrix2.Rd | 58 SPOT-2.1.2/SPOT/man/objectiveFunctionEvaluation.Rd | 78 SPOT-2.1.2/SPOT/man/optimDE.Rd | 110 SPOT-2.1.2/SPOT/man/optimES.Rd | 124 SPOT-2.1.2/SPOT/man/optimGenoud.Rd | 88 SPOT-2.1.2/SPOT/man/optimLBFGSB.Rd | 92 SPOT-2.1.2/SPOT/man/optimLHD.Rd | 92 SPOT-2.1.2/SPOT/man/optimNLOPTR.Rd | 120 SPOT-2.1.2/SPOT/man/parseTunedRegionModel.Rd |only SPOT-2.1.2/SPOT/man/perceptron.Rd |only SPOT-2.1.2/SPOT/man/plot.spotRSM.Rd | 34 SPOT-2.1.2/SPOT/man/plot.spotTreeModel.Rd |only SPOT-2.1.2/SPOT/man/plotData.Rd | 140 SPOT-2.1.2/SPOT/man/plotFunction.Rd | 192 SPOT-2.1.2/SPOT/man/plotModel.Rd | 118 SPOT-2.1.2/SPOT/man/plotPrediction.Rd |only SPOT-2.1.2/SPOT/man/plotRegion.Rd |only SPOT-2.1.2/SPOT/man/plotRegionByName.Rd |only SPOT-2.1.2/SPOT/man/plotSIRModel.Rd |only SPOT-2.1.2/SPOT/man/plotSingleDimFunction.Rd | 42 SPOT-2.1.2/SPOT/man/predict.cvModel.Rd | 42 SPOT-2.1.2/SPOT/man/predict.dace.Rd | 122 SPOT-2.1.2/SPOT/man/predict.ensembleStack.Rd | 50 SPOT-2.1.2/SPOT/man/predict.kriging.Rd | 86 SPOT-2.1.2/SPOT/man/predict.spotLOESS.Rd | 54 SPOT-2.1.2/SPOT/man/predict.spotLinearModel.Rd | 38 SPOT-2.1.2/SPOT/man/predict.spotRSM.Rd | 50 SPOT-2.1.2/SPOT/man/predict.spotRandomForest.Rd | 38 SPOT-2.1.2/SPOT/man/predict.spotRanger.Rd | 38 SPOT-2.1.2/SPOT/man/predict.spotTreeModel.Rd |only SPOT-2.1.2/SPOT/man/predictKrigingReinterpolation.Rd | 114 SPOT-2.1.2/SPOT/man/preprocessCdeInputData.Rd |only SPOT-2.1.2/SPOT/man/preprocessCdeTestData.Rd |only SPOT-2.1.2/SPOT/man/preprocessInputData.Rd |only SPOT-2.1.2/SPOT/man/preprocessTestData.Rd |only SPOT-2.1.2/SPOT/man/print.Rd | 44 SPOT-2.1.2/SPOT/man/print.spotLOESS.Rd | 40 SPOT-2.1.2/SPOT/man/print.spotLinearModel.Rd | 34 SPOT-2.1.2/SPOT/man/print.spotRSM.Rd | 40 SPOT-2.1.2/SPOT/man/print.spotRandomForest.Rd | 34 SPOT-2.1.2/SPOT/man/print.spotRanger.Rd | 34 SPOT-2.1.2/SPOT/man/print.spotTreeModel.Rd |only SPOT-2.1.2/SPOT/man/regpoly0.Rd | 60 SPOT-2.1.2/SPOT/man/regpoly1.Rd | 64 SPOT-2.1.2/SPOT/man/regpoly2.Rd | 62 SPOT-2.1.2/SPOT/man/repairNonNumeric.Rd | 44 SPOT-2.1.2/SPOT/man/repeatsOCBA.Rd | 64 SPOT-2.1.2/SPOT/man/repmat.Rd | 44 SPOT-2.1.2/SPOT/man/resSpot.Rd |only SPOT-2.1.2/SPOT/man/resSpot2.Rd |only SPOT-2.1.2/SPOT/man/ring.Rd |only SPOT-2.1.2/SPOT/man/satter.Rd | 68 SPOT-2.1.2/SPOT/man/selectAll.Rd |only SPOT-2.1.2/SPOT/man/selectN.Rd |only SPOT-2.1.2/SPOT/man/simulate.kriging.Rd | 118 SPOT-2.1.2/SPOT/man/simulateFunction.Rd | 98 SPOT-2.1.2/SPOT/man/simulationDecompose.Rd | 90 SPOT-2.1.2/SPOT/man/simulationSpectral.Rd | 66 SPOT-2.1.2/SPOT/man/spot.Rd | 229 SPOT-2.1.2/SPOT/man/spotAlgEs.Rd | 184 SPOT-2.1.2/SPOT/man/spotAlgEsDominantReco.Rd | 52 SPOT-2.1.2/SPOT/man/spotAlgEsGetSuccessRate.Rd | 48 SPOT-2.1.2/SPOT/man/spotAlgEsHps.Rd | 44 SPOT-2.1.2/SPOT/man/spotAlgEsIndividualInitial.Rd | 102 SPOT-2.1.2/SPOT/man/spotAlgEsInitParentPop.Rd | 102 SPOT-2.1.2/SPOT/man/spotAlgEsInterReco.Rd | 52 SPOT-2.1.2/SPOT/man/spotAlgEsInterRecoBeSw02.Rd | 48 SPOT-2.1.2/SPOT/man/spotAlgEsMarriage.Rd | 48 SPOT-2.1.2/SPOT/man/spotAlgEsMarriageWithReplace.Rd | 48 SPOT-2.1.2/SPOT/man/spotAlgEsObjMutation.Rd | 34 SPOT-2.1.2/SPOT/man/spotAlgEsSelection.Rd | 50 SPOT-2.1.2/SPOT/man/spotAlgEsStratMutation.Rd | 54 SPOT-2.1.2/SPOT/man/spotAlgEsTermination.Rd | 66 SPOT-2.1.2/SPOT/man/spotControl.Rd | 132 SPOT-2.1.2/SPOT/man/spotFillControlList.Rd | 40 SPOT-2.1.2/SPOT/man/spotHelpBslash.Rd | 40 SPOT-2.1.2/SPOT/man/spotLoop.Rd | 107 SPOT-2.1.2/SPOT/man/sring.Rd |only SPOT-2.1.2/SPOT/man/sringRes1.Rd |only SPOT-2.1.2/SPOT/man/sringRes2.Rd |only SPOT-2.1.2/SPOT/man/sringRes3.Rd |only SPOT-2.1.2/SPOT/man/tuneRegionModel.Rd |only SPOT-2.1.2/SPOT/man/wrapBatchTools.Rd | 58 SPOT-2.1.2/SPOT/man/wrapFunction.Rd | 76 SPOT-2.1.2/SPOT/man/wrapFunctionParallel.Rd | 50 SPOT-2.1.2/SPOT/man/wrapSystemCommand.Rd | 48 SPOT-2.1.2/SPOT/man/wrapSystem_parseMatrixToString.Rd | 36 SPOT-2.1.2/SPOT/tests/testthat.R | 14 SPOT-2.1.2/SPOT/tests/testthat/test.000TestSetup.R | 8 SPOT-2.1.2/SPOT/tests/testthat/test.buildCVModel.R | 32 SPOT-2.1.2/SPOT/tests/testthat/test.buildTreeModel.R |only SPOT-2.1.2/SPOT/tests/testthat/test.designLHD.R | 32 SPOT-2.1.2/SPOT/tests/testthat/test.designUniformRandom.R | 34 SPOT-2.1.2/SPOT/tests/testthat/test.fun.R | 65 SPOT-2.1.2/SPOT/tests/testthat/test.funExternal.R |only SPOT-2.1.2/SPOT/tests/testthat/test.inequalityConstraint.R | 128 SPOT-2.1.2/SPOT/tests/testthat/test.infillExpectedImprovement.R | 178 SPOT-2.1.2/SPOT/tests/testthat/test.initialInputCheck.ControlList.R | 200 SPOT-2.1.2/SPOT/tests/testthat/test.initialInputCheck.xLowerUpper.R | 234 SPOT-2.1.2/SPOT/tests/testthat/test.main.R | 40 SPOT-2.1.2/SPOT/tests/testthat/test.markov.R |only SPOT-2.1.2/SPOT/tests/testthat/test.optim.R | 88 SPOT-2.1.2/SPOT/tests/testthat/test.plots.R | 214 SPOT-2.1.2/SPOT/tests/testthat/test.repair.R |only SPOT-2.1.2/SPOT/tests/testthat/test.satter.R | 26 SPOT-2.1.2/SPOT/tests/testthat/test.select.R |only SPOT-2.1.2/SPOT/tests/testthat/test.sring.R |only SPOT-2.1.2/SPOT/tests/testthat/test.verbosity.R |only SPOT-2.1.2/SPOT/vignettes |only 244 files changed, 11926 insertions(+), 11590 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts, Shewhart control charts and
Pareto charts for continuous quality improvement. Included control charts
are: I, MR, Xbar, S, T, C, U, U', P, P', and G charts. Non-random variation
in the form of minor to moderate persistent shifts in data over time is
identified by the Anhoej rules for unusually long runs and unusually few
crossing [Anhoej, Olesen (2014) <doi:10.1371/journal.pone.0113825>].
Non-random variation in the form of larger, possibly transient, shifts is
identified by Shewhart's 3-sigma rule [Mohammed, Worthington, Woodall (2008)
<doi:10.1136/qshc.2004.012047>].
Author: Jacob Anhoej [aut, cre]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts2 versions 0.6.1 dated 2020-03-15 and 0.7.1 dated 2020-10-28
qicharts2-0.6.1/qicharts2/R/crsignal.R |only qicharts2-0.7.1/qicharts2/DESCRIPTION | 20 qicharts2-0.7.1/qicharts2/MD5 | 35 qicharts2-0.7.1/qicharts2/NAMESPACE | 2 qicharts2-0.7.1/qicharts2/NEWS | 9 qicharts2-0.7.1/qicharts2/R/bchart.R | 10 qicharts2-0.7.1/qicharts2/R/data.R | 54 - qicharts2-0.7.1/qicharts2/R/helper.functions.R | 178 +-- qicharts2-0.7.1/qicharts2/R/qic.R | 98 + qicharts2-0.7.1/qicharts2/R/qic.plot.R | 18 qicharts2-0.7.1/qicharts2/build/vignette.rds |binary qicharts2-0.7.1/qicharts2/inst/doc/qicharts2.Rmd | 12 qicharts2-0.7.1/qicharts2/inst/doc/qicharts2.html | 970 ++++++++++--------- qicharts2-0.7.1/qicharts2/man/bchart.Rd | 8 qicharts2-0.7.1/qicharts2/man/cdi.Rd | 15 qicharts2-0.7.1/qicharts2/man/gtt.Rd | 4 qicharts2-0.7.1/qicharts2/man/hospital_infections.Rd | 19 qicharts2-0.7.1/qicharts2/man/qic.Rd | 67 - qicharts2-0.7.1/qicharts2/vignettes/qicharts2.Rmd | 12 19 files changed, 839 insertions(+), 692 deletions(-)
Title: ODE Generation and Integration
Description: Generate systems of ordinary differential equations
(ODE) and integrate them, using a domain specific language
(DSL). The DSL uses R's syntax, but compiles to C in order to
efficiently solve the system. A solver is not provided, but
instead interfaces to the packages 'deSolve' and 'dde' are
generated. With these, while solving the differential equations,
no allocations are done and the calculations remain entirely in
compiled code. Alternatively, a model can be transpiled to R for
use in contexts where a C compiler is not present. After
compilation, models can be inspected to return information about
parameters and outputs, or intermediate values after calculations.
'odin' is not targeted at any particular domain and is suitable
for any system that can be expressed primarily as mathematical
expressions. Additional support is provided for working with
delays (delay differential equations, DDE), using interpolated
functions during interpolation, and for integrating quantities
that represent arrays.
Author: Rich FitzJohn [aut, cre],
Thibaut Jombart [ctb],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between odin versions 1.0.1 dated 2019-07-02 and 1.0.8 dated 2020-10-28
odin-1.0.1/odin/vignettes/src |only odin-1.0.8/odin/DESCRIPTION | 6 odin-1.0.8/odin/MD5 | 141 - odin-1.0.8/odin/NAMESPACE | 1 odin-1.0.8/odin/NEWS.md | 17 odin-1.0.8/odin/R/common.R | 16 odin-1.0.8/odin/R/compile.R | 12 odin-1.0.8/odin/R/generate_c.R | 4 odin-1.0.8/odin/R/generate_c_class.R | 38 odin-1.0.8/odin/R/generate_c_compiled.R | 20 odin-1.0.8/odin/R/generate_c_equation.R | 28 odin-1.0.8/odin/R/generate_c_sexp.R | 16 odin-1.0.8/odin/R/generate_c_support.R | 2 odin-1.0.8/odin/R/generate_r.R | 22 odin-1.0.8/odin/R/generate_r_class.R | 12 odin-1.0.8/odin/R/generate_r_equation.R | 8 odin-1.0.8/odin/R/generate_r_sexp.R | 2 odin-1.0.8/odin/R/generate_r_support.R | 3 odin-1.0.8/odin/R/ir_parse.R | 20 odin-1.0.8/odin/R/ir_parse_arrays.R | 37 odin-1.0.8/odin/R/ir_parse_error.R | 2 odin-1.0.8/odin/R/odin_package.R | 16 odin-1.0.8/odin/R/odin_preprocess.R | 2 odin-1.0.8/odin/R/support.R | 40 odin-1.0.8/odin/R/utils.R | 5 odin-1.0.8/odin/README.md | 18 odin-1.0.8/odin/build/vignette.rds |binary odin-1.0.8/odin/inst/WORDLIST | 1 odin-1.0.8/odin/inst/doc/discrete.R | 30 odin-1.0.8/odin/inst/doc/discrete.Rmd | 8 odin-1.0.8/odin/inst/doc/discrete.html | 1325 +++++----- odin-1.0.8/odin/inst/doc/functions.R |only odin-1.0.8/odin/inst/doc/functions.Rmd |only odin-1.0.8/odin/inst/doc/functions.html |only odin-1.0.8/odin/inst/doc/odin.R | 74 odin-1.0.8/odin/inst/doc/odin.Rmd | 6 odin-1.0.8/odin/inst/doc/odin.html | 1279 +++++---- odin-1.0.8/odin/inst/functions.json |only odin-1.0.8/odin/inst/library.c | 43 odin-1.0.8/odin/inst/schema.json | 5 odin-1.0.8/odin/man/figures |only odin-1.0.8/odin/tests/testthat/examples/array_2d_odin.R | 16 odin-1.0.8/odin/tests/testthat/examples/array_deSolve.R | 18 odin-1.0.8/odin/tests/testthat/examples/array_odin.R | 14 odin-1.0.8/odin/tests/testthat/examples/array_odin_user.R | 14 odin-1.0.8/odin/tests/testthat/examples/array_odin_user2.R | 14 odin-1.0.8/odin/tests/testthat/examples/array_odin_user3.R | 14 odin-1.0.8/odin/tests/testthat/examples/lv4_deSolve.R | 2 odin-1.0.8/odin/tests/testthat/examples/lv4_odin.R | 4 odin-1.0.8/odin/tests/testthat/examples/seir_array_deSolve.R | 12 odin-1.0.8/odin/tests/testthat/examples/seir_array_odin.R | 21 odin-1.0.8/odin/tests/testthat/examples/seir_deSolve.R | 8 odin-1.0.8/odin/tests/testthat/examples/seir_odin.R | 8 odin-1.0.8/odin/tests/testthat/examples/sir_deSolve.R | 2 odin-1.0.8/odin/tests/testthat/helper-odin.R | 19 odin-1.0.8/odin/tests/testthat/run/test-run-basic.R | 29 odin-1.0.8/odin/tests/testthat/run/test-run-delay-continuous.R | 16 odin-1.0.8/odin/tests/testthat/run/test-run-discrete.R | 8 odin-1.0.8/odin/tests/testthat/run/test-run-examples.R | 10 odin-1.0.8/odin/tests/testthat/run/test-run-general.R | 161 - odin-1.0.8/odin/tests/testthat/run/test-run-interpolation.R | 30 odin-1.0.8/odin/tests/testthat/run/test-run-library.R | 128 odin-1.0.8/odin/tests/testthat/run/test-run-regression.R | 4 odin-1.0.8/odin/tests/testthat/stochastic/sir_discrete_stochastic.R | 4 odin-1.0.8/odin/tests/testthat/test-generate-c.R |only odin-1.0.8/odin/tests/testthat/test-interface.R | 1 odin-1.0.8/odin/tests/testthat/test-odin-validate.R | 2 odin-1.0.8/odin/tests/testthat/test-package.R | 35 odin-1.0.8/odin/tests/testthat/test-parse-inplace.R | 18 odin-1.0.8/odin/tests/testthat/test-parse2-general.R | 57 odin-1.0.8/odin/tests/testthat/test-parse2-interpolation.R | 6 odin-1.0.8/odin/tests/testthat/test-support.R | 84 odin-1.0.8/odin/vignettes/discrete.Rmd | 8 odin-1.0.8/odin/vignettes/functions.Rmd |only odin-1.0.8/odin/vignettes/odin.Rmd | 6 75 files changed, 2356 insertions(+), 1676 deletions(-)
Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It helps actuaries to implement GLMs within all relevant steps needed to construct
a risk premium from raw data. It provides a data driven strategy for the construction of insurance tariff classes.
This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>. It also provides recipes
on how to easily perform one-way, or univariate, analyses on an insurance portfolio. In addition it adds functionality
to include reference categories in the levels of the coefficients in the output of a generalized linear regression analysis.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.6.2 dated 2020-06-08 and 0.6.3 dated 2020-10-28
DESCRIPTION | 8 +-- MD5 | 35 ++++++++------- NAMESPACE | 3 + NEWS.md | 6 ++ R/biggest_reference.R | 4 - R/fit_gam.R | 14 +++--- R/histbin.R |only R/reduce.R | 33 +++++++------- R/utils.R | 87 ++++++++++++++++++++++++++++++++++++++ R/zzz.R | 2 man/biggest_reference.Rd | 4 - man/figures/example10-1.png |binary man/figures/example12-1.png |binary man/figures/example14-1.png |only man/figures/example15-1.png |only man/figures/normalitysim-1.png |binary man/figures/unnamed-chunk-3-1.png |only man/fit_gam.Rd | 3 - man/histbin.Rd |only man/reduce.Rd | 3 + man/reexports.Rd | 2 21 files changed, 157 insertions(+), 47 deletions(-)
More information about insurancerating at CRAN
Permanent link
Title: Extensions for 'Flextable'
Description: Build display tables easily by extending the functionality of the
'flextable' package. Features include spanning header, grouping rows,
parsing markdown and so on.
Author: Atsushi Yasumoto [aut, cph, cre]
(<https://orcid.org/0000-0002-8335-495X>),
Romain François [ctb] (<https://orcid.org/0000-0002-2444-4226>)
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>
Diff between ftExtra versions 0.0.2 dated 2020-08-29 and 0.1.0 dated 2020-10-28
ftExtra-0.0.2/ftExtra/R/ast2df.R |only ftExtra-0.0.2/ftExtra/tests/testthat/as-paragraph-md.R |only ftExtra-0.0.2/ftExtra/tests/testthat/test-ast2df.R |only ftExtra-0.1.0/ftExtra/DESCRIPTION | 10 ftExtra-0.1.0/ftExtra/MD5 | 66 +-- ftExtra-0.1.0/ftExtra/NAMESPACE | 2 ftExtra-0.1.0/ftExtra/NEWS.md | 18 ftExtra-0.1.0/ftExtra/R/as-paragraph-md.R | 116 ++++- ftExtra-0.1.0/ftExtra/R/colformat.R | 59 ++- ftExtra-0.1.0/ftExtra/R/footnote.R |only ftExtra-0.1.0/ftExtra/R/ftExtra.R | 1 ftExtra-0.1.0/ftExtra/R/md2ast.R | 35 + ftExtra-0.1.0/ftExtra/R/md2df.R |only ftExtra-0.1.0/ftExtra/R/utils.R | 12 ftExtra-0.1.0/ftExtra/README.md | 1 ftExtra-0.1.0/ftExtra/build/vignette.rds |binary ftExtra-0.1.0/ftExtra/inst/doc/format_columns.R | 72 +++ ftExtra-0.1.0/ftExtra/inst/doc/format_columns.Rmd | 166 +++++++- ftExtra-0.1.0/ftExtra/inst/doc/format_columns.html | 236 +++++++++--- ftExtra-0.1.0/ftExtra/inst/doc/group-rows.R | 3 ftExtra-0.1.0/ftExtra/inst/doc/group-rows.Rmd | 3 ftExtra-0.1.0/ftExtra/inst/doc/group-rows.html | 60 ++- ftExtra-0.1.0/ftExtra/inst/doc/transform-headers.R | 3 ftExtra-0.1.0/ftExtra/inst/doc/transform-headers.Rmd | 3 ftExtra-0.1.0/ftExtra/inst/doc/transform-headers.html | 56 ++ ftExtra-0.1.0/ftExtra/inst/lua |only ftExtra-0.1.0/ftExtra/man/as_paragraph_md.Rd | 31 + ftExtra-0.1.0/ftExtra/man/colformat_md.Rd | 17 ftExtra-0.1.0/ftExtra/man/footnote_options.Rd |only ftExtra-0.1.0/ftExtra/tests/testthat/helper-test.R |only ftExtra-0.1.0/ftExtra/tests/testthat/test-as-paragraph-md.R |only ftExtra-0.1.0/ftExtra/tests/testthat/test-md2ast.R |only ftExtra-0.1.0/ftExtra/tests/testthat/test-md2df.R |only ftExtra-0.1.0/ftExtra/tests/testthat/test-utils.R | 13 ftExtra-0.1.0/ftExtra/tests/testthat/test-with-blanks.R | 4 ftExtra-0.1.0/ftExtra/vignettes/example.bib |only ftExtra-0.1.0/ftExtra/vignettes/format_columns.Rmd | 166 +++++++- ftExtra-0.1.0/ftExtra/vignettes/group-rows.Rmd | 3 ftExtra-0.1.0/ftExtra/vignettes/transform-headers.Rmd | 3 39 files changed, 948 insertions(+), 211 deletions(-)
Title: Log Rotation and Conditional Backups
Description: Conditionally rotate or back-up files based on
their size or the date of the last backup; inspired by the 'Linux'
utility 'logrotate'.
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between rotor versions 0.3.3 dated 2020-10-27 and 0.3.4 dated 2020-10-28
DESCRIPTION | 6 ++--- MD5 | 10 ++++----- NEWS.md | 6 ++++- R/Cache.R | 3 -- tests/testthat/test_BackupQueue.R | 1 tests/testthat/test_Cache.R | 40 ++++++++------------------------------ 6 files changed, 24 insertions(+), 42 deletions(-)
Title: The n-vector Approach to Geographical Position Calculations
using an Ellipsoidal Model of Earth
Description: The n-vector framework uses the normal vector to
the Earth ellipsoid (called n-vector) as a non-singular position
representation that turns out to be very convenient for practical
position calculations. The n-vector is simple to use and gives exact
answers for all global positions, and all distances, for both
ellipsoidal and spherical Earth models. This package is a translation
of the 'Matlab' library from FFI, the Norwegian Defence Research
Establishment, as described in Gade (2010)
<doi:10.1017/S0373463309990415>.
Author: Enrico Spinielli [aut, cre] (<https://orcid.org/0000-0001-8584-9131>),
EUROCONTROL [cph, fnd]
Maintainer: Enrico Spinielli <enrico.spinielli@eurocontrol.int>
Diff between nvctr versions 0.1.1 dated 2019-03-07 and 0.1.4 dated 2020-10-28
DESCRIPTION | 52 - LICENSE | 4 MD5 | 124 +-- NAMESPACE | 48 - NEWS.md | 23 R/R2xyz.R | 104 +- R/R2zyx.R | 98 +- R/R_EL2n_E.R | 54 - R/R_EN2n_E.R | 52 - R/R_Ee.R | 120 +- R/along_track_distance.R |only R/altitude_azimuth_distance.R |only R/cross_track_distance.R |only R/cross_track_intersection.R |only R/lat_lon2n_E.R | 48 - R/n_E2R_EN.R | 100 +- R/n_E2lat_lon.R | 70 - R/n_EA_E_and_n_EB_E2p_AB_E.R | 86 +- R/n_EA_E_and_p_AB_E2n_EB_E.R | 104 +- R/n_EB_E2p_EB_E.R | 114 +- R/n_E_and_wa2R_EL.R | 68 - R/nvctr-package.R | 24 R/p_EB_E2n_EB_E.R | 146 +-- R/utils-pipe.R | 22 R/utils.R | 129 +-- R/xyz2R.R | 98 +- R/zyx2R.R | 104 +- README.md | 159 +-- build/vignette.rds |binary inst/WORDLIST | 76 - inst/doc/position-calculations.R | 531 ++++++------ inst/doc/position-calculations.Rmd | 1288 ++++++++++++++++--------------- inst/doc/position-calculations.html | 1488 +++++++++++++++++++++++------------- man/R2xyz.Rd | 88 +- man/R2zyx.Rd | 90 +- man/R_EL2n_E.Rd | 66 - man/R_EN2n_E.Rd | 66 - man/R_Ee.Rd | 108 +- man/along_track_distance.Rd |only man/altitude_azimuth_distance.Rd |only man/cross_track_distance.Rd |only man/cross_track_intersection.Rd |only man/deg.Rd | 51 - man/figures/cross-track.png |only man/figures/cross-track.svg |only man/figures/euctrl-logo-wide.svg | 506 ++++++------ man/figures/euctrl-logo.svg | 458 +++++------ man/figures/logo.svg | 902 ++++++++++----------- man/lat_lon2n_E.Rd | 60 - man/n_E2R_EN.Rd | 56 - man/n_E2lat_lon.Rd | 56 - man/n_EA_E_and_n_EB_E2p_AB_E.Rd | 114 +- man/n_EA_E_and_p_AB_E2n_EB_E.Rd | 129 +-- man/n_EB_E2p_EB_E.Rd | 92 +- man/n_E_and_wa2R_EL.Rd | 72 - man/nvctr.Rd | 64 - man/p_EB_E2n_EB_E.Rd | 88 +- man/pipe.Rd | 24 man/rad.Rd | 51 - man/unit.Rd | 48 - man/xyz2R.Rd | 92 +- man/zyx2R.Rd | 96 +- tests/spelling.R | 7 tests/testthat.R | 8 tests/testthat/test_conversion.R | 506 ++++++------ tests/testthat/test_utilities.R | 18 vignettes/ex11img.png |only vignettes/position-calculations.Rmd | 1288 ++++++++++++++++--------------- vignettes/solution10img.png |only 69 files changed, 5608 insertions(+), 4930 deletions(-)
Title: The Tidymodels Extension for Time Series Modeling
Description: The time series forecasting framework for use with the 'tidymodels' ecosystem.
Models include ARIMA, Exponential Smoothing, and additional time series models
from the 'forecast' and 'prophet' packages. Refer to "Forecasting Principles & Practice, Second edition"
(<https://otexts.com/fpp2/>).
Refer to "Prophet: forecasting at scale"
(<https://research.fb.com/blog/2017/02/prophet-forecasting-at-scale/>.).
Author: Matt Dancho [aut, cre],
Business Science [cph]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between modeltime versions 0.2.1 dated 2020-10-08 and 0.3.0 dated 2020-10-28
DESCRIPTION | 12 MD5 | 60 +-- NAMESPACE | 1 NEWS.md | 24 + R/modeltime-accuracy.R | 467 +++++++++++++-------------- R/modeltime-calibrate.R | 61 ++- R/modeltime-forecast-plot.R | 1 R/modeltime-forecast.R | 171 ++++++++- R/parsnip-arima_boost_data.R | 6 R/parsnip-arima_reg_data.R | 6 R/parsnip-exp_smoothing_data.R | 3 R/parsnip-nnetar_reg_data.R | 3 R/parsnip-prophet_boost_data.R | 3 R/parsnip-prophet_reg_data.R | 355 ++++++++++---------- R/parsnip-seasonal_reg_data.R | 9 R/utils-checks-validations.R | 87 ++++- inst/doc/extending-modeltime.R | 5 inst/doc/extending-modeltime.Rmd | 5 inst/doc/extending-modeltime.html | 65 +++ inst/doc/getting-started-with-modeltime.R | 6 inst/doc/getting-started-with-modeltime.Rmd | 6 inst/doc/getting-started-with-modeltime.html | 126 +++++-- man/arima_boost.Rd | 4 man/mdl_time_forecast.Rd | 11 man/modeltime_accuracy.Rd | 3 man/modeltime_forecast.Rd | 33 + man/prophet_boost.Rd | 4 man/summarize_accuracy_metrics.Rd |only tests/testthat/test-algo-arima_boost-Arima.R | 36 +- tests/testthat/test-panel-data.R |only vignettes/extending-modeltime.Rmd | 5 vignettes/getting-started-with-modeltime.Rmd | 6 32 files changed, 999 insertions(+), 585 deletions(-)
Title: Projection Predictive Feature Selection
Description: Performs projection predictive feature selection for generalized linear
models and generalized linear and additive multilevel models
(see, Piironen, Paasiniemi and Vehtari, 2020, <https://projecteuclid.org/euclid.ejs/1589335310>,
Catalina, Bürkner and Vehtari, 2020, <arXiv:2010.06994>).
The package is compatible with the 'rstanarm' and 'brms' packages, but other
reference models can also be used. See the package vignette for more
information and examples.
Author: Juho Piironen [aut],
Markus Paasiniemi [aut],
Alejandro Catalina [cre, aut],
Aki Vehtari [aut],
Jonah Gabry [ctb],
Marco Colombo [ctb],
Paul-Christian Bürkner [ctb]
Maintainer: Alejandro Catalina <alecatfel@gmail.com>
Diff between projpred versions 2.0.0 dated 2020-10-26 and 2.0.2 dated 2020-10-28
DESCRIPTION | 6 ++--- MD5 | 20 +++++++++--------- NEWS.md | 10 +++++++++ R/methods.R | 21 ++++++++++++------- R/varsel.R | 3 +- man/plot.vsel.Rd | 9 +++++++- man/proj-pred.Rd | 4 +-- man/suggest_size.vsel.Rd | 4 +-- man/summary.vsel.Rd | 4 +-- man/varsel.Rd | 3 +- tests/testthat/test_datafit.R | 46 +++++++++++++++++++++++++++++------------- 11 files changed, 87 insertions(+), 43 deletions(-)
Title: Unsupervised Gaussian Mixture and Minkowski and Spherical
K-Means with Constraints
Description: High performance trainers for parameterizing and clustering weighted data. The Gaussian mixture (GM) module includes the conventional EM (expectation maximization) trainer, the component-wise EM trainer, the minimum-message-length EM trainer by Figueiredo and Jain (2002) <doi:10.1109/34.990138>. These trainers accept additional constraints on mixture weights and covariance eigen ratios. The K-means (KM) module offers clustering with the options of (i) deterministic and stochastic K-means++ initializations, (ii) upper bounds on cluster weights (sizes), (iii) Minkowski distances, (iv) cosine dissimilarity, (v) dense and sparse representation of data input. The package improved the typical implementations of GM and KM algorithms in various aspects. It is carefully crafted in multithreaded C++ for modeling large data in industry use.
Author: Charlie Wusuo Liu
Maintainer: Charlie Wusuo Liu <liuwusuo@gmail.com>
Diff between GMKMcharlie versions 1.0.3 dated 2019-10-08 and 1.1.1 dated 2020-10-28
DESCRIPTION | 11 + MD5 | 33 +++-- R/GM.r | 17 ++- R/RcppExports.R | 4 inst |only man/GM.Rd | 56 +++++++++- man/KM.Rd | 4 man/KMconstrained.Rd | 6 - man/KMconstrainedSparse.Rd | 3 man/KMsparse.Rd | 2 src/RcppExports.cpp | 14 +- src/gmmClassic.cpp | 249 +++++++++++++++++++++++++++++++++++++++++---- src/h/G.hpp | 4 src/h/dnyTasking.hpp | 21 ++- src/h/funs.hpp | 5 src/km.cpp | 2 src/kmppini.cpp | 4 tests/gm/gmTest.r | 43 +++++++ 18 files changed, 405 insertions(+), 73 deletions(-)
Title: Analysis of Ecological Data: Exploratory and Euclidean Methods
in Environmental Sciences
Description: Tools for multivariate data analysis. Several methods are provided for the analysis (i.e., ordination) of one-table (e.g., principal component analysis, correspondence analysis), two-table (e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ analysis) and K-table (e.g., STATIS, multiple coinertia analysis). The philosophy of the package is described in Dray and Dufour (2007) <doi:10.18637/jss.v022.i04>.
Author: Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, Daniel Borcard, Pierre Legendre, Stéphanie Bougeard and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ade4 versions 1.7-15 dated 2020-02-13 and 1.7-16 dated 2020-10-28
ChangeLog | 58 +++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 12 ++++----- MD5 | 44 ++++++++++++++++++---------------- NAMESPACE | 8 ++++-- R/loocv.R |only R/mbpcaiv.R | 24 ++---------------- R/mbpls.R | 20 ++------------- R/multiblock.R | 15 ++++------- R/suprow.R | 6 ++-- inst/CITATION | 45 +++++++++++++++++----------------- man/apis108.Rd | 2 - man/arrival.Rd | 2 - man/casitas.Rd | 2 - man/kcponds.Rd | 2 - man/loocv.bca.Rd |only man/loocv.discrimin.Rd |only man/loocv.dudi.Rd |only man/mbpcaiv.Rd | 2 - man/mbpls.Rd | 2 - man/multiblock.Rd | 2 - man/pcw.Rd | 4 +-- man/presid2002.Rd | 2 - man/randboot.multiblock.Rd | 2 - man/testdim.multiblock.Rd | 2 - man/varipart.Rd | 2 - 25 files changed, 145 insertions(+), 113 deletions(-)
Title: Tools for the Analysis of Animal Track Data
Description: Functions for accessing and manipulating spatial data for animal
tracking, with straightforward coercion from and to other formats. Filter
for speed and create time spent maps from animal track data. There are
coercion methods to convert between 'trip' and 'ltraj' from 'adehabitatLT',
and between 'trip' and 'psp' and 'ppp' from 'spatstat'. Trip objects
can be created from raw or grouped data frames, and from types in the 'sp',
'sf', 'amt', 'trackeR', 'mousetrap', and other packages.
Author: Michael D. Sumner [aut, cre],
Sebastian Luque [ctb],
Anthony Fischbach [ctb],
Tomislav Hengl [ctb]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between trip versions 1.7.1 dated 2020-06-15 and 1.8.0 dated 2020-10-28
DESCRIPTION | 15 - MD5 | 28 +- NAMESPACE | 3 NEWS.md | 8 R/interp_equal.R |only README.md | 2 build/vignette.rds |binary inst/CITATION | 4 inst/WORDLIST | 2 inst/doc/trip-rationale.Rmd | 2 inst/doc/trip-rationale.html | 27 ++ inst/doc/trip.html | 434 +++++++++++++++++++++++++++++++++++-------- man/interp_equal.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-algos.R | 68 +++--- vignettes/trip-rationale.Rmd | 2 16 files changed, 462 insertions(+), 133 deletions(-)
Title: Bayesian Inference for Log-Normal Data
Description: Bayesian inference under log-normality assumption must be performed very carefully. In fact, under the common priors for the variance, useful quantities in the original data scale (like mean and quantiles) do not have posterior moments that are finite (Fabrizi et al. 2012 <doi:10.1214/12-BA733>). This package allows to easily carry out a proper Bayesian inferential procedure by fixing a suitable distribution (the generalized inverse Gaussian) as prior for the variance. Functions to estimate several kind of means (unconditional, conditional and conditional under a mixed model) and quantiles (unconditional and conditional) are provided.
Author: Aldo Gardini [aut, cre] (<https://orcid.org/0000-0002-2164-5815>),
Enrico Fabrizi [aut] (<https://orcid.org/0000-0003-2504-7043>),
Carlo Trivisano [aut] (<https://orcid.org/0000-0002-5991-4902>)
Maintainer: Aldo Gardini <aldo.gardini2@unibo.it>
Diff between BayesLN versions 0.1.2 dated 2020-02-20 and 0.2.1 dated 2020-10-28
BayesLN-0.1.2/BayesLN/src/gibbs_rvg.cpp |only BayesLN-0.1.2/BayesLN/src/gibbs_rvg_rep.cpp |only BayesLN-0.1.2/BayesLN/src/nor_generator.cpp |only BayesLN-0.1.2/BayesLN/src/nor_generator.h |only BayesLN-0.1.2/BayesLN/src/pred_gen.cpp |only BayesLN-0.2.1/BayesLN/DESCRIPTION | 28 - BayesLN-0.2.1/BayesLN/MD5 | 74 +--- BayesLN-0.2.1/BayesLN/NAMESPACE | 4 BayesLN-0.2.1/BayesLN/R/Est_quant.R | 10 BayesLN-0.2.1/BayesLN/R/Hier_model.R | 239 +++---------- BayesLN-0.2.1/BayesLN/R/RcppExports.R | 20 - BayesLN-0.2.1/BayesLN/build/vignette.rds |binary BayesLN-0.2.1/BayesLN/inst/doc/BayesLogNormal.R | 2 BayesLN-0.2.1/BayesLN/inst/doc/BayesLogNormal.Rmd | 5 BayesLN-0.2.1/BayesLN/inst/doc/BayesLogNormal.html | 373 +++++++++++---------- BayesLN-0.2.1/BayesLN/man/EPA09.Rd | 4 BayesLN-0.2.1/BayesLN/man/LN_Quant.Rd | 3 BayesLN-0.2.1/BayesLN/man/LN_QuantReg.Rd | 4 BayesLN-0.2.1/BayesLN/man/LN_hierarchical.Rd | 3 BayesLN-0.2.1/BayesLN/man/NCBC.Rd | 6 BayesLN-0.2.1/BayesLN/man/RatioBesselK.Rd | 22 - BayesLN-0.2.1/BayesLN/man/ReadingTime.Rd | 6 BayesLN-0.2.1/BayesLN/man/SMNGZmoment.Rd | 24 - BayesLN-0.2.1/BayesLN/man/add.Rd | 22 - BayesLN-0.2.1/BayesLN/man/add_MGF.Rd | 22 - BayesLN-0.2.1/BayesLN/man/fatigue.Rd | 6 BayesLN-0.2.1/BayesLN/man/functional_delta.Rd | 24 - BayesLN-0.2.1/BayesLN/man/functional_gamma.Rd | 24 - BayesLN-0.2.1/BayesLN/man/g_V_vec.Rd | 44 +- BayesLN-0.2.1/BayesLN/man/inf_sum.Rd | 24 - BayesLN-0.2.1/BayesLN/man/inf_sum_MGF.Rd | 24 - BayesLN-0.2.1/BayesLN/man/integral.Rd | 22 - BayesLN-0.2.1/BayesLN/man/integral_MGF.Rd | 22 - BayesLN-0.2.1/BayesLN/man/laminators.Rd | 6 BayesLN-0.2.1/BayesLN/man/momentRecursion.Rd | 24 - BayesLN-0.2.1/BayesLN/man/zerfun.Rd | 24 - BayesLN-0.2.1/BayesLN/man/zerfun_log.Rd | 24 - BayesLN-0.2.1/BayesLN/src/RcppExports.cpp | 144 ++------ BayesLN-0.2.1/BayesLN/src/gibbs.cpp |only BayesLN-0.2.1/BayesLN/vignettes/BayesLogNormal.Rmd | 5 BayesLN-0.2.1/BayesLN/vignettes/bibliography.bib | 8 41 files changed, 585 insertions(+), 711 deletions(-)
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Description: Provides HE plot and other functions for visualizing hypothesis
tests in multivariate linear models. HE plots represent sums-of-squares-and-
products matrices for linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions). The related 'candisc' package
provides visualizations in a reduced-rank canonical discriminant space when
there are more than a few response variables.
Author: John Fox [aut],
Michael Friendly [aut, cre],
Georges Monette [ctb],
Phil Chalmers [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between heplots versions 1.3-5 dated 2018-04-03 and 1.3-7 dated 2020-10-28
DESCRIPTION | 19 +- MD5 | 217 ++++++++++++++++---------------- NEWS | 12 + R/covEllipses.R | 2 R/etasq.R | 6 R/heplot3d.R | 29 ++-- build/vignette.rds |binary data/AddHealth.RData |binary data/Adopted.RData |binary data/Bees.rda |binary data/Diabetes.RData |binary data/FootHead.rda |binary data/Headache.RData |binary data/Hernior.RData |binary data/MockJury.RData |binary data/NLSY.RData |binary data/NeuroCog.RData |binary data/Oslo.RData |binary data/Parenting.RData |binary data/Plastic.rda |binary data/Pottery2.RData |binary data/Probe1.RData |binary data/Probe2.RData |binary data/RatWeight.RData |binary data/ReactTime.RData |binary data/Rohwer.rda |binary data/RootStock.rda |binary data/Sake.RData |binary data/Skulls.RData |binary data/SocGrades.RData |binary data/SocialCog.RData |binary data/VocabGrowth.rda |binary data/WeightLoss.RData |binary data/mathscore.RData |only data/schooldata.RData |binary inst/CITATION | 4 inst/WORDLIST |only inst/doc/HE-examples.Rnw | 14 +- inst/doc/HE-examples.pdf |binary inst/doc/repeated.pdf |binary man/Adopted.Rd | 2 man/Diabetes.Rd | 2 man/Hernior.Rd | 2 man/MockJury.Rd | 6 man/NLSY.Rd | 2 man/NeuroCog.Rd | 12 - man/Oslo.Rd | 2 man/Parenting.Rd | 6 man/Probe.Rd | 2 man/RatWeight.Rd | 2 man/ReactTime.Rd | 2 man/Skulls.Rd | 9 - man/SocialCog.Rd | 6 man/VocabGrowth.Rd | 2 man/WeightLoss.Rd | 2 man/boxM.Rd | 4 man/cqplot.Rd | 2 man/ellipse3d.axes.Rd | 4 man/etasq.Rd | 4 man/heplot-package.Rd | 18 +- man/heplot.Rd | 12 - man/heplot1d.Rd | 6 man/heplot3d.Rd | 12 - man/interpPlot.Rd | 4 man/leveneTests.Rd | 2 man/logdetCI.Rd | 6 man/mathscore.Rd |only man/pairs.mlm.Rd | 6 man/plot.robmlm.Rd | 4 vignettes/HE-examples.Rnw | 14 +- vignettes/fig/plot-Ortho-fm1.pdf |binary vignettes/fig/plot-Ortho-fm3.pdf |binary vignettes/fig/plot-grades-can-class.pdf |binary vignettes/fig/plot-grades-can-gpa.pdf |binary vignettes/fig/plot-grades-can-sex.pdf |binary vignettes/fig/plot-grades-pairs.pdf |binary vignettes/fig/plot-hern-can-age.pdf |binary vignettes/fig/plot-hern-can-build.pdf |binary vignettes/fig/plot-hern-can-cardiac.pdf |binary vignettes/fig/plot-hern-can-pstat.pdf |binary vignettes/fig/plot-hern-pairs.pdf |binary vignettes/fig/plot-jury-can1.pdf |binary vignettes/fig/plot-jury-mod1-HE.pdf |binary vignettes/fig/plot-jury-mod1-pairs.pdf |binary vignettes/fig/plot-jury-mod2-HE.pdf |binary vignettes/fig/plot-jury-mod3-eff.pdf |binary vignettes/fig/plot-obk-HE1.pdf |binary vignettes/fig/plot-obk-HE2.pdf |binary vignettes/fig/plot-obk-HE3.pdf |binary vignettes/fig/plot-obk2-HE1.pdf |binary vignettes/fig/plot-obk2-HE2.pdf |binary vignettes/fig/plot-ortho-HE.pdf |binary vignettes/fig/plot-ortho-nonlin-HE.pdf |binary vignettes/fig/plot-ortho-xyplot1.pdf |binary vignettes/fig/plot-ortho-xyplot2.pdf |binary vignettes/fig/plot-plastic2.pdf |binary vignettes/fig/plot-rohwer-HE1.pdf |binary vignettes/fig/plot-rohwer-HE2.pdf |binary vignettes/fig/plot-rohwer-HE3.pdf |binary vignettes/fig/plot-rohwer-HE4.pdf |binary vignettes/fig/plot-skulls-HE-pairs.pdf |binary vignettes/fig/plot-skulls-bwplot.pdf |binary vignettes/fig/plot-skulls-can2.pdf |binary vignettes/fig/plot-skulls4.pdf |binary vignettes/fig/plot-voc1.pdf |binary vignettes/fig/plot-voc4.pdf |binary vignettes/fig/plot-voc8.pdf |binary vignettes/fig/plot-wl-HE1.pdf |binary vignettes/fig/plot-wl-HE2.pdf |binary vignettes/fig/plot-wl-HE3.pdf |binary vignettes/fig/plot-wl-means.pdf |binary 111 files changed, 248 insertions(+), 212 deletions(-)
Title: Visualizations of High-Dimensional Data
Description: Gives access to data visualisation methods that are relevant from the data scientist's point of view. The flagship idea of 'DataVisualizations' is the mirrored density plot (MD-plot) for either classified or non-classified multivariate data published in Thrun, M.C. et al.: "Analyzing the Fine Structure of Distributions" (2020), PLoS ONE, <DOI:10.1371/journal.pone.0238835>. The MD-plot outperforms the box-and-whisker diagram (box plot), violin plot and bean plot and geom_violin plot of ggplot2. Furthermore, a collection of various visualization methods for univariate data is provided. In the case of exploratory data analysis, 'DataVisualizations' makes it possible to inspect the distribution of each feature of a dataset visually through a combination of four methods. One of these methods is the Pareto density estimation (PDE) of the probability density function (pdf). Additionally, visualizations of the distribution of distances using PDE, the scatter-density plot using PDE for two variables as well as the Shepard density plot and the Bland-Altman plot are presented here. Pertaining to classified high-dimensional data, a number of visualizations are described, such as f.ex. the heat map and silhouette plot. A political map of the world or Germany can be visualized with the additional information defined by a classification of countries or regions. By extending the political map further, an uncomplicated function for a Choropleth map can be used which is useful for measurements across a geographic area. For categorical features, the Pie charts, slope charts and fan plots, improved by the ABC analysis, become usable. More detailed explanations are found in the book by Thrun, M.C.: "Projection-Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9>.
Author: Michael Thrun [aut, cre, cph] (<https://orcid.org/0000-0001-9542-5543>),
Felix Pape [aut, rev],
Onno Hansen-Goos [ctr, ctb],
Hamza Tayyab [ctr, ctb],
Dirk Eddelbuettel [ctr],
Craig Varrichio [ctr],
Alfred Ultsch [dtc, ctb, ctr]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DataVisualizations versions 1.2.0 dated 2020-08-04 and 1.2.1 dated 2020-10-28
DESCRIPTION | 13 MD5 | 41 R/ClassMDplot.R | 163 R/DensityScatter.R | 324 - R/MDplot.R | 968 ++-- R/smooth1D.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 5 inst/doc/DataVisualizations.R | 15 inst/doc/DataVisualizations.Rmd | 30 inst/doc/DataVisualizations.html | 305 - man/Choroplethmap.Rd | 10 man/ClassMDplot.Rd | 36 man/DataVisualizations-package.Rd | 5 man/MDplot.Rd | 8 man/MDplot4multiplevectors.Rd | 6 man/Plot3D.Rd | 2 man/world_country_polygons.Rd | 8739 -------------------------------------- src/RcppExports.cpp | 12 src/packagename_init.c |only vignettes/DataVisualizations.Rmd | 30 22 files changed, 1057 insertions(+), 9657 deletions(-)
More information about DataVisualizations at CRAN
Permanent link
Title: Functions and Examples for "Software for Data Analysis"
Description: Functions, examples and other software related to the book
"Software for Data Analysis: Programming with R". See
package?SoDA for an overview.
Author: John M Chambers
Maintainer: John M Chambers <jmc@r-project.org>
Diff between SoDA versions 1.0-6 dated 2013-06-12 and 1.0-6.1 dated 2020-10-28
SoDA-1.0-6.1/SoDA/DESCRIPTION | 6 +++--- SoDA-1.0-6.1/SoDA/LICENSE.note |only SoDA-1.0-6.1/SoDA/MD5 | 14 +++++++------- SoDA-1.0-6.1/SoDA/NAMESPACE | 6 ++++++ SoDA-1.0-6.1/SoDA/R/geoDist.R | 4 ++-- SoDA-1.0-6.1/SoDA/R/strictOp.R | 12 +++++++----- SoDA-1.0-6.1/SoDA/man/chunksAdd.Rd | 2 +- SoDA-1.0-6.1/SoDA/man/digest.Rd | 12 +++++++----- SoDA-1.0-6/SoDA/LICENSE |only 9 files changed, 33 insertions(+), 23 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Daniel Caetano [aut],
James Boyko [aut]
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Diff between hisse versions 1.9.9 dated 2020-10-20 and 1.9.10 dated 2020-10-28
DESCRIPTION | 8 ++--- MD5 | 46 ++++++++++++++++---------------- R/geohisse.R | 2 - R/geohisse.old.R | 2 - R/hisse.R | 4 +- R/hisse.old.R | 2 - R/hisseNull4.old.R | 4 ++ R/misse.R | 2 - R/muhisse.R | 2 - inst/doc/Clade-specific-sampling.pdf |binary inst/doc/GeoHiSSE-vignette.R | 2 - inst/doc/GeoHiSSE-vignette.Rmd | 2 - inst/doc/GeoHiSSE-vignette.pdf |binary inst/doc/MiSSE-vignette.pdf |binary inst/doc/MuHiSSE-vignette.pdf |binary inst/doc/hisse-fisse-type1-vignette.pdf |binary inst/doc/hisse-new-vignette.R | 6 ++-- inst/doc/hisse-new-vignette.Rmd | 6 ++-- inst/doc/hisse-new-vignette.pdf |binary inst/doc/hisse-vignette.pdf |binary vignettes/GeoHiSSE-vignette.Rmd | 2 - vignettes/GeoHiSSE-vignette.html | 2 - vignettes/hisse-new-vignette.Rmd | 6 ++-- vignettes/hisse-new-vignette.html | 6 ++-- 24 files changed, 54 insertions(+), 50 deletions(-)
Title: Download Geospatial Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO
(Geographic Information System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>.
This package is in no way officially related to or endorsed by Eurostat.
Author: Diego Hernangómez [aut, cre] (<https://orcid.org/0000-0001-8457-4658>)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.1.0 dated 2020-10-13 and 0.1.1 dated 2020-10-28
DESCRIPTION | 10 - MD5 | 28 +-- NEWS.md | 10 + R/data.R | 19 ++ README.md | 159 +++++++++---------- data/tgs00026.rda |only inst/doc/giscoR.R | 93 ++++++++--- inst/doc/giscoR.Rmd | 110 +++++++++---- inst/doc/giscoR.html | 318 ++++++++++++++++++++++----------------- man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/figures/README-example-3.png |binary man/figures/README-example-4.png |only man/figures/README-example-5.png |only man/figures/logo.png |binary man/tgs00026.Rd |only vignettes/giscoR.Rmd | 110 +++++++++---- 17 files changed, 534 insertions(+), 323 deletions(-)
Title: Collect ESPN Fantasy Football Data
Description: Format the raw data from the ESPN fantasy football
API <https://fantasy.espn.com/apis/v3/games/ffl/> into tidy tables.
Scrape data on public leagues, rosters, athletes, and matches.
Author: Kiernan Nicholls [aut, cre]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between fflr versions 0.3.8 dated 2020-10-27 and 0.3.9 dated 2020-10-28
DESCRIPTION | 8 MD5 | 12 NEWS.md | 4 inst/doc/fantasy-football.html | 1005 ++++++++++++++++++++--------------------- tests/testthat/test-live.R | 25 - tests/testthat/test-news.R | 17 tests/testthat/test-outlooks.R | 1 7 files changed, 536 insertions(+), 536 deletions(-)
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial transport
data and non-motorized modes. Enables common transport planning tasks including:
downloading and cleaning transport datasets; creating geographic "desire lines"
from origin-destination (OD) data; route assignment, locally and via
interfaces to routing services such as <https://cyclestreets.net/> and
calculation of route segment attributes such as bearing.
The package implements the 'travel flow aggregration' method
described in Morgan and Lovelace (2020) <doi:10.1177/2399808320942779>.
Further information on the package's aim and scope can be found
in the vignettes and in a paper in the R Journal
(Lovelace and Ellison 2018) <doi:10.32614/RJ-2018-053>.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Richard Ellison [aut],
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Barry Rowlingson [ctb] (Author of overline),
Nick Bearman [ctb] (Co-author of gclip),
Nikolai Berkoff [ctb] (Co-author of line2route),
Scott Chamberlain [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10),
Mark Padgham [ctb],
Andrea Gilardi [ctb] (<https://orcid.org/0000-0002-9424-7439>)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.7.2 dated 2020-09-04 and 0.8.0 dated 2020-10-28
DESCRIPTION | 18 - MD5 | 72 ++-- NAMESPACE | 1 NEWS.md | 8 R/line_breakup.R |only R/node-funs.R | 3 R/od-funs.R | 40 ++ R/overline.R | 176 ++++++------ build/vignette.rds |binary inst/doc/stplanr-od.html | 572 +++++++++++++++++++++------------------ inst/doc/stplanr-paper.html | 378 ++++++++++++++----------- inst/doc/stplanr-parallel.html | 270 ++++++++++-------- inst/doc/stplanr-route-nets.html | 224 +++++++++------ inst/doc/stplanr-routing.html | 136 ++++++--- inst/doc/stplanr.html | 194 ++++++++----- man/angle_diff.Rd | 1 man/geo_toptail.Rd | 1 man/is_linepoint.Rd | 1 man/line2df.Rd | 1 man/line2points.Rd | 12 man/line_bearing.Rd | 1 man/line_breakup.Rd |only man/line_match.Rd | 1 man/line_midpoint.Rd | 1 man/line_sample.Rd | 1 man/line_segment.Rd | 1 man/line_via.Rd | 1 man/mats2line.Rd | 1 man/n_sample_length.Rd | 1 man/n_vertices.Rd | 1 man/onewaygeo.Rd | 1 man/overline.Rd | 78 +++-- man/overline_intersection.Rd | 7 man/points2line.Rd | 1 man/route_nearest_point.Rd | 4 man/toptail_buff.Rd | 1 man/toptailgs.Rd | 1 man/update_line_geometry.Rd | 1 38 files changed, 1284 insertions(+), 927 deletions(-)
Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula
in 'Tidy Eval' code that calculates the predictions.
It works with several databases back-ends because it leverages 'dplyr'
and 'dbplyr' for the final 'SQL' translation of the algorithm. It currently
supports lm(), glm(), randomForest(), ranger(), earth(), xgb.Booster.complete(),
cubist(), and ctree() models.
Author: Max Kuhn [aut, cre]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between tidypredict versions 0.4.7 dated 2020-10-05 and 0.4.8 dated 2020-10-28
DESCRIPTION | 6 +-- MD5 | 36 ++++++++++----------- NEWS.md | 4 ++ R/model-lm.R | 8 ++-- inst/doc/cubist.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/glm.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/lm.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/mars.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/non-r.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/ranger.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/regression.html | 9 +++++ inst/doc/rf.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/save.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/sql.html | 71 +++++++++++++++++++++++++++++++++++++++++ inst/doc/tree.html | 9 +++++ inst/doc/xgboost.html | 73 ++++++++++++++++++++++++++++++++++++++++++- tests/testthat/test-ranger.R | 2 - tests/testthat/test_glm.R | 14 ++++++++ tests/testthat/test_lm.R | 14 ++++++++ 19 files changed, 788 insertions(+), 26 deletions(-)
Title: Model Wrappers for Rule-Based Models
Description: Bindings for additional models for use with the 'parsnip' package.
Models include prediction rule ensembles (Friedman and Popescu, 2008)
<doi:10.1214/07-AOAS148>, C5.0 rules (Quinlan, 1992 ISBN: 1558602380), and
Cubist (Kuhn and Johnson, 2013) <doi:10.1007/978-1-4614-6849-3>.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between rules versions 0.0.3 dated 2020-10-02 and 0.1.0 dated 2020-10-28
DESCRIPTION | 8 +++---- MD5 | 24 +++++++++++----------- NEWS.md | 4 +++ R/C5_rules.R | 6 +++++ R/C5_rules_data.R | 12 +++++++++++ R/cubist.R | 7 ++++++ R/cubist_data.R | 12 +++++++++++ R/rule_fit.R | 6 +++++ R/rule_fit_data.R | 24 ++++++++++++++++++++++ README.md | 4 --- inst/WORDLIST | 1 tests/testthat/test-c5.R | 14 ++++++------- tests/testthat/test-cubist.R | 46 +++++++++++++++++++++++-------------------- 13 files changed, 121 insertions(+), 47 deletions(-)
Title: Model Wrappers for Poisson Regression
Description: Bindings for Poisson regression models for use with the
'parsnip' package. Models include simple generalized linear models,
Bayesian models, and zero-inflated Poisson models (Zeileis, Kleiber, and
Jackman (2008) <doi:10.18637/jss.v027.i08>).
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between poissonreg versions 0.0.1 dated 2020-04-14 and 0.1.0 dated 2020-10-28
poissonreg-0.0.1/poissonreg/tests/testthat/test-poisson-reg-glmnet.R |only poissonreg-0.0.1/poissonreg/tests/testthat/test-poisson-reg-stan.R |only poissonreg-0.1.0/poissonreg/DESCRIPTION | 13 - poissonreg-0.1.0/poissonreg/MD5 | 26 +-- poissonreg-0.1.0/poissonreg/NAMESPACE | 5 poissonreg-0.1.0/poissonreg/NEWS.md |only poissonreg-0.1.0/poissonreg/R/0_imports.R | 11 - poissonreg-0.1.0/poissonreg/R/poisson_reg.R | 51 +++++- poissonreg-0.1.0/poissonreg/R/poisson_reg_data.R | 70 ++++++++ poissonreg-0.1.0/poissonreg/R/zzz.R |only poissonreg-0.1.0/poissonreg/README.md | 79 +++++++--- poissonreg-0.1.0/poissonreg/inst/WORDLIST | 3 poissonreg-0.1.0/poissonreg/man/poisson_reg.Rd | 19 -- poissonreg-0.1.0/poissonreg/man/predict_raw._fishnet.Rd | 5 poissonreg-0.1.0/poissonreg/man/rmd/poission-reg-engine.Rmd | 10 - poissonreg-0.1.0/poissonreg/tests/testthat/test-poisson-reg.R | 8 - 16 files changed, 218 insertions(+), 82 deletions(-)
Title: Model Wrappers for Projection Methods
Description: Bindings for additional regression models for use
with the 'parsnip' package, including ordinary and spare partial least
squares models for regression and classification (Rohart et al (2017)
<doi:10.1371/journal.pcbi.1005752>).
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between plsmod versions 0.1.0 dated 2020-10-07 and 0.1.1 dated 2020-10-28
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ R/pls_data.R | 24 ++++++++++++++++++++++++ R/predict.R | 13 +++++++++++++ inst/WORDLIST | 1 + tests/testthat/test-reg-pls.R | 25 +++++++++++++++++++++++++ 7 files changed, 80 insertions(+), 10 deletions(-)
Title: Model Wrappers for Discriminant Analysis
Description: Bindings for additional classification models for use with the
'parsnip' package. Models include flavors of discriminant analysis, such as
linear (Fisher (1936) <doi:10.1111/j.1469-1809.1936.tb02137.x>), regularized
(Friedman (1989) <doi:10.1080/01621459.1989.10478752>), and flexible
(Hastie, Tibshirani, and Buja (1994) <doi:10.1080/01621459.1994.10476866>),
as well as naive Bayes classifiers (Hand and Yu (2007)
<doi:10.1111/j.1751-5823.2001.tb00465.x>).
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between discrim versions 0.1.0 dated 2020-07-07 and 0.1.1 dated 2020-10-28
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/discrim_flexible_data.R | 4 +++- R/discrim_lin_data.R | 8 ++++++-- R/discrim_regularized_data.R | 4 +++- R/naive_Bayes_data.R | 8 ++++++-- inst/WORDLIST | 2 +- 8 files changed, 38 insertions(+), 19 deletions(-)
Title: Efficient Model Functions for Bagging
Description: Tree- and rule-based models can be bagged using
this package and their predictions equations are stored
in an efficient format to reduce the model objects size
and speed.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between baguette versions 0.0.1 dated 2020-04-14 and 0.1.0 dated 2020-10-28
DESCRIPTION | 10 ++-- MD5 | 12 ++--- NEWS.md | 4 + R/bag_mars_data.R | 25 ++++++++++ R/bag_tree_data.R | 37 ++++++++++++++++ README.md | 123 ++++++++++++++++++++++++++++++++++++++++++++++++++---- man/reexports.Rd | 2 7 files changed, 194 insertions(+), 19 deletions(-)