Title: Grouped Statistical Analyses in a Tidy Way
Description: Collection of functions to run statistical tests
across all combinations of multiple grouping variables.
Author: Indrajeet Patil [aut, cre, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between groupedstats versions 1.0.2 dated 2020-10-30 and 2.0.0 dated 2020-12-01
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NAMESPACE | 27 ++++----------------------- NEWS.md | 4 +++- R/grouped_summary.R | 4 ---- R/helpers.R |only R/lm_effsize_ci.R | 1 + R/reexports.R | 49 ------------------------------------------------- README.md | 48 +----------------------------------------------- man/reexports.Rd | 15 --------------- 10 files changed, 22 insertions(+), 151 deletions(-)
Title: Expressions and Dataframes with Statistical Details
Description: Statistical processing backend for 'ggstatsplot',
this package creates expressions with details from statistical tests.
It can additionally return dataframes with these results, which also
make these functions a more pipe-friendly way to do statistical
analysis. Currently, it supports only the most common types of
statistical tests: parametric, nonparametric, robust, and Bayesian
versions of t-test/ANOVA, correlation analyses, contingency table
analysis, and meta-analysis.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 0.6.0 dated 2020-10-30 and 0.6.1 dated 2020-12-01
statsExpressions-0.6.0/statsExpressions/data/Titanic_full.rdata |only statsExpressions-0.6.0/statsExpressions/man/Titanic_full.Rd |only statsExpressions-0.6.1/statsExpressions/DESCRIPTION | 16 statsExpressions-0.6.1/statsExpressions/MD5 | 78 +-- statsExpressions-0.6.1/statsExpressions/NAMESPACE | 9 statsExpressions-0.6.1/statsExpressions/NEWS.md | 65 +- statsExpressions-0.6.1/statsExpressions/R/data.R | 23 statsExpressions-0.6.1/statsExpressions/R/global_vars.R | 218 --------- statsExpressions-0.6.1/statsExpressions/R/helpers_anova.R | 9 statsExpressions-0.6.1/statsExpressions/R/helpers_contingency_tabs.R | 66 -- statsExpressions-0.6.1/statsExpressions/R/helpers_correlation.R | 7 statsExpressions-0.6.1/statsExpressions/R/helpers_meta_random.R | 44 - statsExpressions-0.6.1/statsExpressions/R/helpers_miscellaneous.R | 39 + statsExpressions-0.6.1/statsExpressions/R/helpers_t_onesample.R | 9 statsExpressions-0.6.1/statsExpressions/R/helpers_t_test.R | 6 statsExpressions-0.6.1/statsExpressions/R/reexports.R | 4 statsExpressions-0.6.1/statsExpressions/README.md | 6 statsExpressions-0.6.1/statsExpressions/inst/WORDLIST | 55 +- statsExpressions-0.6.1/statsExpressions/inst/doc/stats_details.html | 242 ---------- statsExpressions-0.6.1/statsExpressions/man/expr_contingency_tab.Rd | 17 statsExpressions-0.6.1/statsExpressions/man/expr_corr_test.Rd | 8 statsExpressions-0.6.1/statsExpressions/man/expr_meta_random.Rd | 225 ++++----- statsExpressions-0.6.1/statsExpressions/man/figures/README-corr-1.png |binary statsExpressions-0.6.1/statsExpressions/man/reexports.Rd | 3 statsExpressions-0.6.1/statsExpressions/man/tidy_model_parameters.Rd |only statsExpressions-0.6.1/statsExpressions/man/tidy_model_performance.Rd |only statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_anova_bayes.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_anova_nonparametric.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_anova_parametric.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_anova_robust.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_contingency_tab.R | 66 +- statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_corr_test.R | 10 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_meta_random_bayes.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_meta_random_parametric.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_meta_random_robust.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_t_bayes.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_t_nonparametric.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_t_onesample.R | 11 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_t_parametric.R | 5 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_t_robust.R | 2 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-expr_templates.R | 21 statsExpressions-0.6.1/statsExpressions/tests/testthat/test-loop_execution.R | 26 + 42 files changed, 426 insertions(+), 882 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Tools for Working with XML Files as R Dataframes
Description: On import, the XML information is converted to a dataframe that reflects the hierarchical XML structure. Intuitive functions allow to navigate within this transparent XML data structure (without any knowledge of 'XPath'). 'flatXML' also provides tools to extract data from the XML into a flat dataframe that can be used to perform statistical operations. It also supports converting dataframes to XML.
Author: Joachim Zuckarelli [aut, cre]
Maintainer: Joachim Zuckarelli <joachim@zuckarelli.de>
Diff between flatxml versions 0.1.0 dated 2020-07-24 and 0.1.1 dated 2020-12-01
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/flatxml.r | 5 +++++ 3 files changed, 11 insertions(+), 6 deletions(-)
Title: Comfortably Converting XML Documents to Dataframes and Vice
Versa
Description: Converts XML documents to R dataframes and dataframes to XML documents.
A wide variety of options allows for different XML formats and flexible control
of the conversion process. Results can be exported to CSV and Excel, if desired.
Also converts XML data to R lists.
Author: Joachim Zuckarelli [aut, cre] (<https://orcid.org/0000-0002-9280-3016>)
Maintainer: Joachim Zuckarelli <joachim@zuckarelli.de>
Diff between xmlconvert versions 0.1.0 dated 2020-10-29 and 0.1.1 dated 2020-12-01
DESCRIPTION | 11 ++-- MD5 | 14 +++-- NAMESPACE | 1 NEWS.md | 8 +++ R/xml_convert.r | 134 +++++++++++++++++++++++++++++++++++++++++++++++------ README.md | 12 ++-- inst/customers.xml |only man/xml_to_df.Rd | 22 ++++---- man/xml_to_list.Rd |only 9 files changed, 161 insertions(+), 41 deletions(-)
Title: Spatial Data Download and Utility Functions
Description: A suite of conversion functions to create internally standardized
spatial polygons data frames. Utility functions use these data sets to
return values such as country, state, timezone, watershed, etc. associated
with a set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Rachel Carroll [aut],
Eli Grosman [aut],
Roger Andre [aut],
Tom Bergamaschi [aut],
Tina Chen [aut],
Ruby Fore [aut],
Will Leahy [aut],
Helen Miller [aut],
Henry Nguyen [aut],
Robin Winstanley [aut],
Alice Yang [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaSpatialUtils versions 0.6.4 dated 2019-09-28 and 0.7.3 dated 2020-12-01
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MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/convertWorldTimezones.R | 184 ++- MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/data.R |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getCountry.R | 92 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getCountryCode.R | 91 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getCountryName.R | 93 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getHUC.R | 85 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getHUCName.R | 88 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getPolygonID.R | 36 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getSpatialData.R | 181 +-- MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getState.R | 97 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getStateCode.R | 93 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getStateName.R | 98 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getTimezone.R | 93 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getUSCounty.R | 96 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/getVariable.R | 105 +- MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/installSpatialData.R | 70 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/installSpatialData_0.6.R |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/installedSpatialData.R |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/loadSpatialData.R | 60 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/organizePolygons.R | 104 +- MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/subsetHUC.R | 77 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/R/summarizeByPolygon.R | 92 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/README.md | 46 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/build/vignette.rds |binary MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/data/SimpleCountries.rda |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/data/SimpleCountriesEEZ.rda |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/data/SimpleTimezones.rda |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/data/US_countyCodes.rda |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/data/datalist | 2 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/demo/findCountries.R | 34 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/Developer_Style_Guide.Rmd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/Developer_Style_Guide.html |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/MazamaSpatialUtils.R | 88 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/MazamaSpatialUtils.Rmd | 286 +++-- MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/MazamaSpatialUtils.html | 173 +-- MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/Understanding_sp_Objects.R |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/Understanding_sp_Objects.Rmd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/Understanding_sp_Objects.html |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/available-data.Rmd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/inst/doc/available-data.html |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/CONUS.Rd | 9 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/MazamaSpatialUtils.Rd | 7 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/SimpleCountries.Rd | 31 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/SimpleCountriesEEZ.Rd | 34 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/SimpleTimezones.Rd | 43 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/SpatialDataDir.Rd | 4 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/US_52.Rd | 9 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/US_countyCodes.Rd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/US_countyConversion.Rd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/US_stateCodes.Rd | 25 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/US_stateConversion.Rd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/codeToCountry.Rd | 4 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/codeToState.Rd | 13 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertCARBAirBasins.Rd | 42 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertEEZCountries.Rd | 86 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertEPARegions.Rd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertGACC.Rd | 86 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertGADM.Rd | 62 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertNWSFireZones.Rd | 24 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertNaturalEarthAdm1.Rd | 24 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertOSMTimezones.Rd | 65 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertStateLegislativeDistricts.Rd | 71 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertTMWorldBorders.Rd | 12 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertTMWorldBordersSimple.Rd | 13 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertTerrestrialEcoregions.Rd | 40 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertUSCensusCBSA.Rd | 49 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertUSCensusCongress.Rd | 38 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertUSCensusCounties.Rd | 47 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertUSCensusStates.Rd | 60 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertUSCensusUrbanAreas.Rd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertUSIndianLands.Rd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertWBDHUC.Rd | 88 + MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertWeatherZones.Rd | 29 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertWikipediaTimezoneTable.Rd | 12 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/convertWorldTimezones.Rd | 51 - MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/countryToCode.Rd | 4 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/dissolve.Rd | 13 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getCountry.Rd | 40 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getCountryCode.Rd | 38 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getCountryName.Rd | 40 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getHUC.Rd | 25 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getHUCName.Rd | 27 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getPolygonID.Rd | 10 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getSpatialData.Rd | 36 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getState.Rd | 46 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getStateCode.Rd | 43 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getStateName.Rd | 45 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getTimezone.Rd | 42 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getUSCounty.Rd | 46 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/getVariable.Rd | 43 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/installSpatialData.Rd | 16 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/installSpatialData_0.6.Rd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/installedSpatialData.Rd |only MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/iso2ToIso3.Rd | 4 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/iso3ToIso2.Rd | 4 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/loadSpatialData.Rd | 15 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/organizePolygons.Rd | 16 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/setSpatialDataDir.Rd | 2 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/simplify.Rd | 6 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/stateToCode.Rd | 13 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/subsetHUC.Rd | 30 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/man/summarizeByPolygon.Rd | 17 MazamaSpatialUtils-0.7.3/MazamaSpatialUtils/tests/testthat/test-MazamaSpatialUtils.R | 72 - 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More information about MazamaSpatialUtils at CRAN
Permanent link
Title: A Tool for Downloading Functional Traits Data for Plant Species
Description: Plant ecologists often need to collect "traits" data
about plant species which are often scattered among various
databases: TR8 contains a set of tools which take care of
automatically retrieving some of those functional traits data
for plant species from publicly available databases (Biolflor,
The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg
values for Italian Flora, Mycorrhizal intensity databases, Catminat, BROT,
PLANTS, Jepson Flora Project).
The TR8 name, inspired by "car plates" jokes, was chosen since
it both reminds of the main object of the package and is
extremely short to type.
Author: Gionata Bocci <boccigionata@gmail.com>
Maintainer: Gionata Bocci <boccigionata@gmail.com>
Diff between TR8 versions 0.9.21 dated 2020-05-17 and 0.9.22 dated 2020-12-01
DESCRIPTION | 15 - MD5 | 54 ++-- NAMESPACE | 9 NEWS | 21 + R/LEDA.R | 37 +-- R/Pignatti.R | 19 - R/biolflor.R | 11 R/catminat_download.R | 193 ++++++++++------- R/clean_table.R | 2 R/ecoflora.R | 2 R/leda_download.R | 69 +++--- R/leda_general.R | 45 ++-- R/tr8.R | 94 ++++++-- R/zzz.R | 11 build/vignette.rds |binary data/available_tr8.rda |binary data/column_list.R | 502 ++++++++++++++++++++++----------------------- data/traits_Biolflor.R | 3 data/traits_eco.R | 47 ++-- inst/doc/Expanding_TR8.pdf |binary inst/doc/TR8.R | 38 --- inst/doc/TR8.Rnw | 109 +++++---- inst/doc/TR8.pdf |binary inst/doc/TR8_workflow.pdf |binary man/TR8-package.Rd | 2 man/column_list.Rd | 2 man/tr8.Rd | 9 vignettes/TR8.Rnw | 109 +++++---- 28 files changed, 778 insertions(+), 625 deletions(-)
Title: Simulating Plays and Drives in the NFL
Description: The intent here is to enable the simulation of plays/drives and
evaluate game-play strategies in the National Football League (NFL).
Built-in strategies include going for it on fourth down and varying the
proportion of passing/rushing plays during a drive. The user should be
familiar with nflscrapR data before trying to write his/her own
strategies. This work is inspired by a blog post by Mike Lopez,
currently the Director of Data and Analytics at the NFL, Lopez (2019) <https://statsbylopez.netlify.app/post/resampling-nfl-drives/>.
Author: Ryan Elmore [cre, aut] (<https://orcid.org/0000-0002-0092-4532>),
Ben Williams [aut] (<https://orcid.org/0000-0001-8474-5066>),
Will Palmquist [aut] (<https://orcid.org/0000-0002-6100-0923>)
Maintainer: Ryan Elmore <Ryan.Elmore@du.edu>
Diff between NFLSimulatoR versions 0.1.0 dated 2020-11-23 and 0.2 dated 2020-12-01
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ NAMESPACE | 1 + NEWS.md | 5 ++++- R/download_nflfastR_data.R |only R/download_nflscrapR_data.R | 4 ++-- README.md | 8 +++++--- man/download_nflfastR_data.Rd |only man/download_nflscrapR_data.Rd | 4 ++-- 9 files changed, 25 insertions(+), 17 deletions(-)
Title: Simple Key Value Stores
Description: Creates and manages simple key-value stores. These can
use a variety of approaches for storing the data. This package
implements the base methods and support for file system, in-memory
and DBI-based database stores.
Author: Rich FitzJohn [aut, cre],
William Michael Landau [ctb] (<https://orcid.org/0000-0003-1878-3253>)
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between storr versions 1.2.4 dated 2020-10-12 and 1.2.5 dated 2020-12-01
DESCRIPTION | 8 MD5 | 14 R/driver_dbi.R | 20 R/spec.R | 24 build/vignette.rds |binary inst/doc/external.html | 829 +++++++++++++++++---------------- inst/doc/storr.html | 1111 ++++++++++++++++++++++++++------------------- tests/testthat/test-spec.R | 1 8 files changed, 1121 insertions(+), 886 deletions(-)
Title: Confirmatory Adaptive Clinical Trial Design and Analysis
Description: Design and analysis of confirmatory adaptive clinical trials with continuous, binary, and survival endpoints according to the methods described in the monograph by Wassmer and Brannath (2016) <doi:10.1007/978-3-319-32562-0>. This includes classical group sequential as well as multi-stage adaptive hypotheses tests that are based on the combination testing principle.
Author: Gernot Wassmer [aut],
Friedrich Pahlke [aut, cre]
Maintainer: Friedrich Pahlke <friedrich.pahlke@rpact.com>
Diff between rpact versions 3.0.2 dated 2020-11-09 and 3.0.3 dated 2020-12-01
DESCRIPTION | 8 MD5 | 174 +- NAMESPACE | 2 NEWS.md | 18 R/class_analysis_dataset.R | 26 R/class_analysis_results.R | 42 R/class_analysis_stage_results.R | 4 R/class_core_parameter_set.R | 51 R/class_design_plan.R | 20 R/class_simulation_results.R | 50 R/class_summary.R | 359 ++-- R/class_time.R | 64 R/f_analysis_base.R | 6 R/f_core_assertions.R | 21 R/f_core_constants.R | 53 R/f_core_output_formats.R | 6 R/f_core_plot.R | 143 + R/f_core_utilities.R | 221 +- R/f_design_group_sequential.R | 16 R/f_design_sample_size_calculator.R | 66 R/f_design_utilities.R | 64 R/f_simulation_base_survival.R | 16 R/f_simulation_multiarm.R | 113 - R/f_simulation_multiarm_means.R | 24 R/f_simulation_multiarm_rates.R | 22 R/f_simulation_multiarm_survival.R | 1010 +----------- R/parameter_descriptions.R | 10 inst/doc/rpact_getting_started.html | 4 inst/tests/testthat/helper-f_analysis_base_means.R | 4 inst/tests/testthat/helper-f_analysis_base_rates.R | 4 inst/tests/testthat/helper-f_analysis_base_survival.R | 4 inst/tests/testthat/test-class_analysis_dataset.R | 11 inst/tests/testthat/test-class_summary.R | 6 inst/tests/testthat/test-class_time.R | 6 inst/tests/testthat/test-f_analysis_base_means.R | 6 inst/tests/testthat/test-f_analysis_base_rates.R | 6 inst/tests/testthat/test-f_analysis_base_survival.R | 6 inst/tests/testthat/test-f_analysis_input_validation.R | 6 inst/tests/testthat/test-f_analysis_multiarm_means.R | 6 inst/tests/testthat/test-f_analysis_multiarm_rates.R | 6 inst/tests/testthat/test-f_analysis_multiarm_survival.R | 6 inst/tests/testthat/test-f_core_assertions.R | 6 inst/tests/testthat/test-f_core_output_formats.R | 6 inst/tests/testthat/test-f_core_plot.R | 6 inst/tests/testthat/test-f_core_utilities.R | 19 inst/tests/testthat/test-f_design_fisher_combination_test.R | 6 inst/tests/testthat/test-f_design_power_calculator.R | 6 inst/tests/testthat/test-f_design_sample_size_calculator.R | 6 inst/tests/testthat/test-f_design_utilities.R | 6 inst/tests/testthat/test-f_simulation_base_means.R | 6 inst/tests/testthat/test-f_simulation_base_rates.R | 6 inst/tests/testthat/test-f_simulation_base_survival.R | 8 inst/tests/testthat/test-f_simulation_multiarm_means.R | 14 inst/tests/testthat/test-f_simulation_multiarm_rates.R | 10 inst/tests/testthat/test-f_simulation_multiarm_survival.R | 677 ++++---- inst/tests/testthat/test-generic_functions.R | 3 man/getAccrualTime.Rd | 14 man/getParameterCaption.Rd |only man/getParameterName.Rd |only man/getSimulationMultiArmMeans.Rd | 8 man/getSimulationMultiArmRates.Rd | 8 man/getSimulationMultiArmSurvival.Rd | 246 -- man/getSimulationSurvival.Rd | 48 man/param_effectMeasure.Rd | 4 tests/testthat/test-class_analysis_dataset.R | 11 tests/testthat/test-class_summary.R | 6 tests/testthat/test-class_time.R | 6 tests/testthat/test-f_analysis_base_means.R | 6 tests/testthat/test-f_analysis_base_rates.R | 6 tests/testthat/test-f_analysis_base_survival.R | 6 tests/testthat/test-f_analysis_input_validation.R | 6 tests/testthat/test-f_analysis_multiarm_means.R | 6 tests/testthat/test-f_analysis_multiarm_rates.R | 6 tests/testthat/test-f_analysis_multiarm_survival.R | 6 tests/testthat/test-f_core_assertions.R | 6 tests/testthat/test-f_core_output_formats.R | 6 tests/testthat/test-f_core_plot.R | 6 tests/testthat/test-f_core_utilities.R | 19 tests/testthat/test-f_design_fisher_combination_test.R | 6 tests/testthat/test-f_design_power_calculator.R | 6 tests/testthat/test-f_design_sample_size_calculator.R | 6 tests/testthat/test-f_design_utilities.R | 6 tests/testthat/test-f_simulation_base_means.R | 6 tests/testthat/test-f_simulation_base_rates.R | 6 tests/testthat/test-f_simulation_base_survival.R | 8 tests/testthat/test-f_simulation_multiarm_means.R | 14 tests/testthat/test-f_simulation_multiarm_rates.R | 10 tests/testthat/test-f_simulation_multiarm_survival.R | 677 ++++---- tests/testthat/test-generic_functions.R | 5 89 files changed, 2130 insertions(+), 2525 deletions(-)
Title: Format Output of Various Routines in a Suitable Way for Reports
and Publication
Description: A bunch of convenience functions that transform the results of some basic statistical analyses
into table format nearly ready for publication. This includes descriptive tables, tables of
logistic regression and Cox regression results as well as forest plots.
Author: Thomas A. Gerds [aut, cre],
Christian Torp-Pedersen [ctb],
Klaus K Holst [ctb],
Brice Ozenne [aut]
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between Publish versions 2020.10.27 dated 2020-10-26 and 2020.11.30 dated 2020-12-01
Publish-2020.10.27/Publish/R/publish.pec.R |only Publish-2020.11.30/Publish/DESCRIPTION | 11 +-- Publish-2020.11.30/Publish/MD5 | 37 ++++++------- Publish-2020.11.30/Publish/NAMESPACE | 1 Publish-2020.11.30/Publish/R/publish.CauseSpecificCox.R | 4 - Publish-2020.11.30/Publish/R/publish.MIresult.R | 23 +++----- Publish-2020.11.30/Publish/R/publish.Score.R | 7 +- Publish-2020.11.30/Publish/R/publish.glm.R | 6 +- Publish-2020.11.30/Publish/R/publish.riskRegression.R | 4 + Publish-2020.11.30/Publish/R/regressionTable.R | 4 + Publish-2020.11.30/Publish/R/splinePlot.lrm.R | 8 +- Publish-2020.11.30/Publish/R/subgroupAnalysis.R | 15 +++-- Publish-2020.11.30/Publish/man/publish.CauseSpecificCox.Rd | 4 - Publish-2020.11.30/Publish/man/publish.MIresult.Rd | 19 ++---- Publish-2020.11.30/Publish/man/publish.Score.Rd | 3 - Publish-2020.11.30/Publish/man/publish.glm.Rd | 6 +- Publish-2020.11.30/Publish/man/publish.riskRegression.Rd | 4 + Publish-2020.11.30/Publish/man/regressionTable.Rd | 4 + Publish-2020.11.30/Publish/man/subgroupAnalysis.Rd | 4 - Publish-2020.11.30/Publish/tests/test-publish-gls.R | 35 ++++++------ 20 files changed, 103 insertions(+), 96 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages. These
include e.g. measures like r-squared, intraclass correlation coefficient
(Nakagawa, Johnson & Schielzeth (2017) <doi:10.1098/rsif.2017.0213>),
root mean squared error or functions to check models for overdispersion,
singularity or zero-inflation and more. Functions apply to a large variety of
regression models, including generalized linear models, mixed effects models
and Bayesian models.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between performance versions 0.5.1 dated 2020-10-29 and 0.6.0 dated 2020-12-01
DESCRIPTION | 23 +- MD5 | 118 +++++++------- NAMESPACE | 24 ++ NEWS.md | 31 +++ R/cronbachs_alpha.R | 1 R/display.R |only R/format.R |only R/icc.R | 2 R/looic.R | 7 R/model_performance.bayesian.R | 108 ++++++++++--- R/model_performance.lavaan.R | 24 +- R/model_performance.lm.R | 118 ++++++++++++-- R/model_performance.rma.R | 9 + R/model_performance_default.R |only R/performance_accuracy.R | 50 ++++-- R/performance_aicc.R | 6 R/performance_mse.R | 57 +++++- R/performance_pcp.R | 8 R/performance_rmse.R | 2 R/performance_roc.R | 9 - R/print-methods.R | 141 ++++++++--------- R/print_md.R |only R/r2.R | 18 +- R/r2_bayes.R | 22 ++ R/r2_coxsnell.R | 4 R/r2_efron.R | 86 +++++----- R/r2_loo.R | 10 + R/r2_nakagawa.R | 12 + R/r2_somers.R |only README.md | 68 ++++---- build/partial.rdb |binary man/check_collinearity.Rd | 188 +++++++++++------------ man/check_distribution.Rd | 104 ++++++------ man/check_homogeneity.Rd | 80 ++++----- man/check_singularity.Rd | 162 +++++++++---------- man/cronbachs_alpha.Rd | 72 ++++---- man/display.performance_model.Rd |only man/figures/unnamed-chunk-19-1.png |binary man/looic.Rd | 50 +++--- man/model_performance.lavaan.Rd | 4 man/model_performance.merMod.Rd | 74 ++++----- man/performance_accuracy.Rd | 3 man/performance_mse.Rd | 68 ++++---- man/performance_roc.Rd | 110 ++++++------- man/pp_check.Rd | 172 ++++++++++----------- man/r2.Rd | 98 ++++++----- man/r2_bayes.Rd | 8 man/r2_loo.Rd | 58 +++---- man/r2_nakagawa.Rd | 9 - man/r2_somers.Rd |only man/reexports.Rd |only tests/testthat/test-cronbachs_alpha.R | 4 tests/testthat/test-icc.R | 10 + tests/testthat/test-item_intercor.R | 2 tests/testthat/test-item_reliability.R | 2 tests/testthat/test-model_performance.bayesian.R | 39 ++++ tests/testthat/test-model_performance.merMod.R | 2 tests/testthat/test-model_performance.rma.R | 4 tests/testthat/test-performance_roc.R |only tests/testthat/test-r2_bayes.R | 18 +- tests/testthat/test-r2_coxsnell.R | 2 tests/testthat/test-r2_kullback.R | 2 tests/testthat/test-r2_mcfadden.R | 2 tests/testthat/test-r2_zeroinflated.R | 2 tests/testthat/test-rmse.R |only 65 files changed, 1346 insertions(+), 961 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see support list of insight; Lüdecke,
Waggoner & Makowski (2019) <doi:10.21105/joss.01412>), this package
implements features like bootstrapping or simulating of parameters and
models, feature reduction (feature extraction and variable selection)
as well as functions to describe data and variable characteristics
(e.g. skewness, kurtosis, smoothness or distribution).
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Søren Højsgaard [aut],
Zen J. Lau [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between parameters versions 0.9.0 dated 2020-10-29 and 0.10.0 dated 2020-12-01
parameters-0.10.0/parameters/DESCRIPTION | 33 parameters-0.10.0/parameters/MD5 | 394 ++++---- parameters-0.10.0/parameters/NAMESPACE | 54 + parameters-0.10.0/parameters/NEWS.md | 396 ++++++-- parameters-0.10.0/parameters/R/bootstrap_parameters.R | 29 parameters-0.10.0/parameters/R/center.R | 17 parameters-0.10.0/parameters/R/ci.R | 147 ++- parameters-0.10.0/parameters/R/ci_betwithin.R | 20 parameters-0.10.0/parameters/R/cluster_analysis.R | 25 parameters-0.10.0/parameters/R/convert_efa_to_cfa.R | 1 parameters-0.10.0/parameters/R/data_partition.R | 4 parameters-0.10.0/parameters/R/datasets.R |only parameters-0.10.0/parameters/R/demean.R | 2 parameters-0.10.0/parameters/R/describe_distribution.R | 42 parameters-0.10.0/parameters/R/display.R |only parameters-0.10.0/parameters/R/dof.R | 32 parameters-0.10.0/parameters/R/dof_kenward.R | 60 - parameters-0.10.0/parameters/R/equivalence_test.R | 105 +- parameters-0.10.0/parameters/R/extract_parameters.R | 106 -- parameters-0.10.0/parameters/R/extract_parameters_anova.R | 14 parameters-0.10.0/parameters/R/factor_analysis.R | 40 parameters-0.10.0/parameters/R/format.R |only parameters-0.10.0/parameters/R/format_parameters.R | 180 ++- parameters-0.10.0/parameters/R/get_scores.R | 108 +- parameters-0.10.0/parameters/R/model_parameters.BFBayesFactor.R | 39 parameters-0.10.0/parameters/R/model_parameters.BayesFM.R | 33 parameters-0.10.0/parameters/R/model_parameters.FactoMineR.R | 8 parameters-0.10.0/parameters/R/model_parameters.Mclust.R | 3 parameters-0.10.0/parameters/R/model_parameters.R | 19 parameters-0.10.0/parameters/R/model_parameters.aov.R | 264 +++-- parameters-0.10.0/parameters/R/model_parameters.bayesian.R | 366 ++++++-- parameters-0.10.0/parameters/R/model_parameters.emmGrid.R | 19 parameters-0.10.0/parameters/R/model_parameters.gam.R | 118 ++ parameters-0.10.0/parameters/R/model_parameters.glht.R | 6 parameters-0.10.0/parameters/R/model_parameters.htest.R | 384 ++++++++ parameters-0.10.0/parameters/R/model_parameters.kmeans.R | 7 parameters-0.10.0/parameters/R/model_parameters.lavaan.R | 18 parameters-0.10.0/parameters/R/model_parameters.lqmm.R | 24 parameters-0.10.0/parameters/R/model_parameters.mfx.R | 71 + parameters-0.10.0/parameters/R/model_parameters.mira.R | 15 parameters-0.10.0/parameters/R/model_parameters.multinom.R | 99 +- parameters-0.10.0/parameters/R/model_parameters.other.R | 31 parameters-0.10.0/parameters/R/model_parameters.pairwise.htest.R |only parameters-0.10.0/parameters/R/model_parameters.psych.R | 20 parameters-0.10.0/parameters/R/model_parameters.ridgelm.R |only parameters-0.10.0/parameters/R/model_parameters.rma.R | 148 ++- parameters-0.10.0/parameters/R/model_parameters.wbm.R | 10 parameters-0.10.0/parameters/R/model_parameters.zeroinfl.R | 25 parameters-0.10.0/parameters/R/model_parameters_default.R | 80 + parameters-0.10.0/parameters/R/model_parameters_mixed.R | 113 ++ parameters-0.10.0/parameters/R/n_clusters.R | 13 parameters-0.10.0/parameters/R/n_factors.R | 167 ++- parameters-0.10.0/parameters/R/n_parameters.R | 15 parameters-0.10.0/parameters/R/p_value.R | 65 + parameters-0.10.0/parameters/R/p_value_betwithin.R | 5 parameters-0.10.0/parameters/R/p_value_kenward.R | 7 parameters-0.10.0/parameters/R/p_value_mfx.R | 2 parameters-0.10.0/parameters/R/p_value_ml1.R | 5 parameters-0.10.0/parameters/R/p_value_satterthwaite.R | 5 parameters-0.10.0/parameters/R/p_value_special.R | 5 parameters-0.10.0/parameters/R/p_value_wald.R | 5 parameters-0.10.0/parameters/R/p_value_zeroinflated.R | 2 parameters-0.10.0/parameters/R/parameters_type.R | 12 parameters-0.10.0/parameters/R/pool_parameters.R | 37 parameters-0.10.0/parameters/R/principal_components.R | 94 +- parameters-0.10.0/parameters/R/print.parameters_model.R | 445 ++------- parameters-0.10.0/parameters/R/print_md.R |only parameters-0.10.0/parameters/R/re-exports.R | 20 parameters-0.10.0/parameters/R/rescale_weights.R | 1 parameters-0.10.0/parameters/R/reshape_loadings.R | 7 parameters-0.10.0/parameters/R/robust_estimation.R | 15 parameters-0.10.0/parameters/R/select_parameters.R | 15 parameters-0.10.0/parameters/R/select_parameters.stanreg.R | 1 parameters-0.10.0/parameters/R/simulate_model.R | 3 parameters-0.10.0/parameters/R/simulate_parameters.R | 92 +- parameters-0.10.0/parameters/R/skewness_kurtosis.R | 72 - parameters-0.10.0/parameters/R/smoothness.R | 2 parameters-0.10.0/parameters/R/standard_error.R | 51 - parameters-0.10.0/parameters/R/utils.R | 54 - parameters-0.10.0/parameters/R/utils_cleaners.R | 10 parameters-0.10.0/parameters/R/utils_format.R |only parameters-0.10.0/parameters/R/utils_model_parameters.R | 100 +- parameters-0.10.0/parameters/R/utils_pca_efa.R | 191 ++-- parameters-0.10.0/parameters/README.md | 80 - parameters-0.10.0/parameters/build/partial.rdb |binary parameters-0.10.0/parameters/build/vignette.rds |binary parameters-0.10.0/parameters/inst/WORDLIST | 279 ++---- parameters-0.10.0/parameters/inst/doc/demean.html | 456 +++++----- parameters-0.10.0/parameters/inst/doc/efa_cfa.html | 128 +- parameters-0.10.0/parameters/inst/doc/model_parameters.R | 106 +- parameters-0.10.0/parameters/inst/doc/model_parameters.Rmd | 115 +- parameters-0.10.0/parameters/inst/doc/model_parameters.html | 365 ++++---- parameters-0.10.0/parameters/inst/doc/model_parameters_formatting.R |only parameters-0.10.0/parameters/inst/doc/model_parameters_formatting.Rmd |only parameters-0.10.0/parameters/inst/doc/model_parameters_formatting.html |only parameters-0.10.0/parameters/inst/doc/model_parameters_mice.Rmd | 2 parameters-0.10.0/parameters/inst/doc/model_parameters_mice.html | 158 +-- parameters-0.10.0/parameters/inst/doc/model_parameters_robust.R | 54 + parameters-0.10.0/parameters/inst/doc/model_parameters_robust.Rmd | 73 + parameters-0.10.0/parameters/inst/doc/model_parameters_robust.html | 162 ++- parameters-0.10.0/parameters/inst/doc/model_parameters_standardized.html | 48 - parameters-0.10.0/parameters/inst/doc/parameters_reduction.html | 46 - parameters-0.10.0/parameters/inst/doc/parameters_selection.Rmd | 2 parameters-0.10.0/parameters/inst/doc/parameters_selection.html | 46 - parameters-0.10.0/parameters/man/center.Rd | 152 +-- parameters-0.10.0/parameters/man/ci.merMod.Rd | 2 parameters-0.10.0/parameters/man/cluster_analysis.Rd | 188 ++-- parameters-0.10.0/parameters/man/degrees_of_freedom.Rd | 1 parameters-0.10.0/parameters/man/demean.Rd | 2 parameters-0.10.0/parameters/man/describe_distribution.Rd | 2 parameters-0.10.0/parameters/man/display.parameters_model.Rd |only parameters-0.10.0/parameters/man/fish.Rd | 2 parameters-0.10.0/parameters/man/format_parameters.Rd | 91 + parameters-0.10.0/parameters/man/model_parameters.Mclust.Rd | 4 parameters-0.10.0/parameters/man/model_parameters.Rd | 37 parameters-0.10.0/parameters/man/model_parameters.aov.Rd | 31 parameters-0.10.0/parameters/man/model_parameters.averaging.Rd | 7 parameters-0.10.0/parameters/man/model_parameters.befa.Rd | 125 +- parameters-0.10.0/parameters/man/model_parameters.default.Rd | 9 parameters-0.10.0/parameters/man/model_parameters.gam.Rd | 19 parameters-0.10.0/parameters/man/model_parameters.glht.Rd | 4 parameters-0.10.0/parameters/man/model_parameters.htest.Rd | 105 +- parameters-0.10.0/parameters/man/model_parameters.kmeans.Rd | 46 - parameters-0.10.0/parameters/man/model_parameters.lavaan.Rd | 3 parameters-0.10.0/parameters/man/model_parameters.merMod.Rd | 8 parameters-0.10.0/parameters/man/model_parameters.mira.Rd | 17 parameters-0.10.0/parameters/man/model_parameters.mlm.Rd | 9 parameters-0.10.0/parameters/man/model_parameters.principal.Rd | 35 parameters-0.10.0/parameters/man/model_parameters.rma.Rd | 16 parameters-0.10.0/parameters/man/model_parameters.stanreg.Rd | 6 parameters-0.10.0/parameters/man/model_parameters.zeroinfl.Rd | 5 parameters-0.10.0/parameters/man/p_value.DirichletRegModel.Rd | 60 - parameters-0.10.0/parameters/man/p_value.poissonmfx.Rd | 88 - parameters-0.10.0/parameters/man/p_value.zeroinfl.Rd | 2 parameters-0.10.0/parameters/man/pool_parameters.Rd | 5 parameters-0.10.0/parameters/man/principal_components.Rd | 38 parameters-0.10.0/parameters/man/print.parameters_model.Rd |only parameters-0.10.0/parameters/man/qol_cancer.Rd | 16 parameters-0.10.0/parameters/man/random_parameters.Rd | 112 +- parameters-0.10.0/parameters/man/reexports.Rd | 13 parameters-0.10.0/parameters/man/select_parameters.Rd | 10 parameters-0.10.0/parameters/man/simulate_model.Rd | 1 parameters-0.10.0/parameters/man/simulate_parameters.Rd | 1 parameters-0.10.0/parameters/man/skewness.Rd | 12 parameters-0.10.0/parameters/man/smoothness.Rd | 68 - parameters-0.10.0/parameters/tests/testthat/test-GLMMadaptive.R | 3 parameters-0.10.0/parameters/tests/testthat/test-backticks.R | 2 parameters-0.10.0/parameters/tests/testthat/test-betareg.R | 116 +- parameters-0.10.0/parameters/tests/testthat/test-bracl.R | 7 parameters-0.10.0/parameters/tests/testthat/test-checks.R | 8 parameters-0.10.0/parameters/tests/testthat/test-ci.R | 14 parameters-0.10.0/parameters/tests/testthat/test-distributions.R | 8 parameters-0.10.0/parameters/tests/testthat/test-equivalence_test.R | 2 parameters-0.10.0/parameters/tests/testthat/test-format.R | 20 parameters-0.10.0/parameters/tests/testthat/test-format_model_parameters.R |only parameters-0.10.0/parameters/tests/testthat/test-format_parameters.R | 78 + parameters-0.10.0/parameters/tests/testthat/test-gam.R | 15 parameters-0.10.0/parameters/tests/testthat/test-gamm.R | 29 parameters-0.10.0/parameters/tests/testthat/test-glmer.R | 4 parameters-0.10.0/parameters/tests/testthat/test-glmmTMB-2.R | 13 parameters-0.10.0/parameters/tests/testthat/test-glmmTMB.R | 22 parameters-0.10.0/parameters/tests/testthat/test-lavaan.R | 1 parameters-0.10.0/parameters/tests/testthat/test-lme.R | 5 parameters-0.10.0/parameters/tests/testthat/test-lmerTest.R | 2 parameters-0.10.0/parameters/tests/testthat/test-mira.R | 3 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.BFBayesFactor.R | 29 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.afex_aov.R |only parameters-0.10.0/parameters/tests/testthat/test-model_parameters.aov.R | 11 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.aov_es_ci.R |only parameters-0.10.0/parameters/tests/testthat/test-model_parameters.blmerMod.R |only parameters-0.10.0/parameters/tests/testthat/test-model_parameters.efa_cfa.R | 15 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.gam.R | 8 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.glm.R | 2 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.htest.R | 57 + parameters-0.10.0/parameters/tests/testthat/test-model_parameters.hurdle.R | 24 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.lme.R | 3 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.maov.R | 36 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.mediate.R |only parameters-0.10.0/parameters/tests/testthat/test-model_parameters.metaBMA.R | 48 - parameters-0.10.0/parameters/tests/testthat/test-model_parameters.mfx.R | 18 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.mixed.R | 20 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.mle2.R |only parameters-0.10.0/parameters/tests/testthat/test-model_parameters.pairwise.htest.R |only parameters-0.10.0/parameters/tests/testthat/test-model_parameters.truncreg.R | 2 parameters-0.10.0/parameters/tests/testthat/test-model_parameters.vgam.R | 18 parameters-0.10.0/parameters/tests/testthat/test-model_parameters_df_method.R | 8 parameters-0.10.0/parameters/tests/testthat/test-model_parameters_labels.R | 1 parameters-0.10.0/parameters/tests/testthat/test-model_parameters_robust.R | 36 parameters-0.10.0/parameters/tests/testthat/test-model_parameters_std.R | 8 parameters-0.10.0/parameters/tests/testthat/test-model_parameters_std_mixed.R | 21 parameters-0.10.0/parameters/tests/testthat/test-p_value.R | 52 - parameters-0.10.0/parameters/tests/testthat/test-parameters_selection.R | 2 parameters-0.10.0/parameters/tests/testthat/test-parameters_table.R | 8 parameters-0.10.0/parameters/tests/testthat/test-parameters_type-2.R | 162 +-- parameters-0.10.0/parameters/tests/testthat/test-parameters_type.R | 30 parameters-0.10.0/parameters/tests/testthat/test-pca.R | 24 parameters-0.10.0/parameters/tests/testthat/test-plm.R | 12 parameters-0.10.0/parameters/tests/testthat/test-quantreg.R | 14 parameters-0.10.0/parameters/tests/testthat/test-rstanarm.R | 3 parameters-0.10.0/parameters/tests/testthat/test-skewness.R | 28 parameters-0.10.0/parameters/tests/testthat/test-zeroinfl.R | 18 parameters-0.10.0/parameters/vignettes/model_parameters.Rmd | 115 +- parameters-0.10.0/parameters/vignettes/model_parameters_formatting.Rmd |only parameters-0.10.0/parameters/vignettes/model_parameters_mice.Rmd | 2 parameters-0.10.0/parameters/vignettes/model_parameters_robust.Rmd | 73 + parameters-0.10.0/parameters/vignettes/parameters_selection.Rmd | 2 parameters-0.9.0/parameters/R/fish.R |only parameters-0.9.0/parameters/R/parameters_table.R |only parameters-0.9.0/parameters/man/parameters_table.Rd |only parameters-0.9.0/parameters/man/print.Rd |only 210 files changed, 6329 insertions(+), 3652 deletions(-)
Title: Improved Text Rendering Support for 'Grid' Graphics
Description: Provides support for rendering of formatted text using 'grid' graphics. Text can be
formatted via a minimal subset of 'Markdown', 'HTML', and inline 'CSS' directives, and it can be
rendered both with and without word wrap.
Author: Claus O. Wilke [aut, cre] (<https://orcid.org/0000-0002-7470-9261>)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between gridtext versions 0.1.2 dated 2020-12-01 and 0.1.3 dated 2020-12-01
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 11 insertions(+), 7 deletions(-)
Title: Library of Research Designs
Description: A simple interface to build designs using the package 'DeclareDesign'.
In one line of code, users can specify the parameters of individual
designs and diagnose their properties. The designers can also be used
to compare performance of a given design across a range of combinations
of parameters, such as effect size, sample size, and assignment probabilities.
Author: Graeme Blair [aut],
Jasper Cooper [aut, cre],
Alexander Coppock [aut],
Macartan Humphreys [aut],
Clara Bicalho [aut],
Neal Fultz [aut],
Lily Medina [aut]
Maintainer: Jasper Cooper <jjc2247@columbia.edu>
Diff between DesignLibrary versions 0.1.4 dated 2019-06-17 and 0.1.5.5 dated 2020-12-01
DESCRIPTION | 8 ++-- MD5 | 54 +++++++++++++++---------------- NAMESPACE | 2 - NEWS.md | 10 +++++ R/DesignLibrary.R | 3 + R/factorial_designer.R | 4 +- R/helpers.R | 1 R/process_tracing_designer.R | 8 ++-- R/randomized_response_designer.R | 9 ++--- R/regression_discontinuity_designer.R | 15 ++++---- man/DesignLibrary.Rd | 3 - man/binary_iv_designer.Rd | 17 +++++++-- man/block_cluster_two_arm_designer.Rd | 25 +++++++++----- man/cluster_sampling_designer.Rd | 12 +++++- man/construct_design_code.Rd | 9 ++++- man/factorial_designer.Rd | 14 ++++++-- man/match.call.defaults.Rd | 12 +++--- man/mediation_analysis_designer.Rd | 11 +++++- man/multi_arm_designer.Rd | 12 +++++- man/pretest_posttest_designer.Rd | 11 +++++- man/process_tracing_designer.Rd | 20 ++++++++--- man/randomized_response_designer.Rd | 9 ++++- man/regression_discontinuity_designer.Rd | 15 ++++++-- man/spillover_designer.Rd | 9 ++++- man/two_arm_attrition_designer.Rd | 11 +++++- man/two_arm_covariate_designer.Rd | 15 ++++++-- man/two_arm_designer.Rd | 14 ++++++-- man/two_by_two_designer.Rd | 20 ++++++++--- 28 files changed, 241 insertions(+), 112 deletions(-)
Title: A Modular, Integrated Approach to Maximum Entropy Distribution
Modeling
Description: Tools for training, selecting, and evaluating maximum entropy
(and standard logistic regression) distribution models. This package
provides tools for user-controlled transformation of explanatory variables,
selection of variables by nested model comparison, and flexible model
evaluation and projection. It follows principles based on the maximum-
likelihood interpretation of maximum entropy modeling, and uses infinitely-
weighted logistic regression for model fitting.
Author: Julien Vollering [aut, cre],
Sabrina Mazzoni [aut],
Rune Halvorsen [aut],
Steven Phillips [cph]
Maintainer: Julien Vollering <julienvollering@gmail.com>
Diff between MIAmaxent versions 1.1.1 dated 2020-04-14 and 1.2.0 dated 2020-12-01
DESCRIPTION | 18 MD5 | 56 + NAMESPACE | 2 NEWS.md | 7 R/calculateFTVA.R |only R/compare.R | 2 R/parsdvs.R | 20 R/parsevs.R | 36 - R/readData.R | 34 - R/selectDVforEV.R | 6 R/selectEV.R | 12 R/utils.R | 42 + README.md | 27 build/vignette.rds |binary inst/doc/a-modeling-example.html | 1072 ++++++++++++++++++------------------- man/MIAmaxent.Rd | 1 man/calculateFTVA.Rd |only man/deriveVars.Rd | 12 man/figures/workflow-flowchart.pdf |binary man/figures/workflow-flowchart.png |binary man/plotFOP.Rd | 11 man/projectModel.Rd | 10 man/readData.Rd | 19 man/selectDVforEV.Rd | 15 man/selectEV.Rd | 19 man/toydata_dvs.Rd | 6 man/toydata_seldvs.Rd | 6 man/toydata_selevs.Rd | 6 man/toydata_sp1po.Rd | 6 vignettes/a-modeling-example.Rmd | 21 30 files changed, 813 insertions(+), 653 deletions(-)
Title: An R Client-Side Interface to the 'OpenSky' API
Description: Provides a client interface to the 'OpenSky' API <https://opensky-network.org>. It allows retrieval
of flight information, as well as aircraft state vectors.
Author: Rafael Ayala, Daniel Ayala, Aleix Sellés, Lara Sellés Vidal
Maintainer: Rafael Ayala <r.ayala14@imperial.ac.uk>
Diff between openSkies versions 0.99.4 dated 2020-11-11 and 0.99.7 dated 2020-12-01
DESCRIPTION | 8 MD5 | 22 NEWS | 3 R/openSkies_queryFunctions.R | 132 - build/vignette.rds |binary inst/doc/openSkies.html | 4283 +++++++++++++++++++++++++++-------- man/getAircraftFlights.Rd | 2 man/getAircraftStateVectorsSeries.Rd | 2 man/getAirportArrivals.Rd | 2 man/getAirportDepartures.Rd | 2 man/getIntervalFlights.Rd | 6 man/getSingleTimeStateVectors.Rd | 4 12 files changed, 3556 insertions(+), 910 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-24 1.4.1
2016-05-10 1.4
2015-07-20 1.3.5
2015-06-23 1.3
2014-09-08 1.2
2014-06-11 1.1
2013-09-01 1.0
Title: D3 JavaScript Scatterplot from R
Description: Creates 'D3' 'JavaScript' scatterplots from 'R' with interactive
features : panning, zooming, tooltips, etc.
Author: Julien Barnier [aut, cre],
Kent Russell [aut, ctb],
Mike Bostock [aut, cph] (d3.js library, http://d3js.org),
Susie Lu [aut, cph] (d3-legend library, http://d3-legend.susielu.com/),
Speros Kokenes [aut, cph] (d3-lasso-plugin library,
https://github.com/skokenes/D3-Lasso-Plugin),
Evan Wang [aut, cph] (d3-labeler plugin,
https://github.com/tinker10/D3-Labeler)
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between scatterD3 versions 0.9.1 dated 2020-03-10 and 0.9.2 dated 2020-12-01
scatterD3-0.9.1/scatterD3/inst/htmlwidgets/lib/d3/d3.v5.min.js |only scatterD3-0.9.2/scatterD3/DESCRIPTION | 10 scatterD3-0.9.2/scatterD3/MD5 | 57 scatterD3-0.9.2/scatterD3/NEWS.md | 7 scatterD3-0.9.2/scatterD3/R/scatterD3.R | 9 scatterD3-0.9.2/scatterD3/README.md | 10 scatterD3-0.9.2/scatterD3/build/vignette.rds |binary scatterD3-0.9.2/scatterD3/inst/doc/introduction.R | 2 scatterD3-0.9.2/scatterD3/inst/doc/introduction.Rmd | 10 scatterD3-0.9.2/scatterD3/inst/doc/introduction.html | 5178 +++++++++- scatterD3-0.9.2/scatterD3/inst/htmlwidgets/lib/d3-lasso-plugin/lasso.js | 26 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/lib/d3/d3-labeler.js | 20 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/lib/d3/d3-legend.min.js | 2 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/lib/d3/d3.v6.min.js |only scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-arrows.js | 28 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-dots.js | 60 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-ellipses.js | 16 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-exports.js | 4 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-labels-lines.js |only scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-labels.js | 198 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-lasso.js | 72 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-legend.js | 32 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-lines.js | 20 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-menu.js | 12 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-scales.js | 108 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-utils.js | 2 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3-zoom.js | 40 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3.js | 185 scatterD3-0.9.2/scatterD3/inst/htmlwidgets/scatterD3.yaml | 9 scatterD3-0.9.2/scatterD3/man/scatterD3.Rd | 8 scatterD3-0.9.2/scatterD3/vignettes/introduction.Rmd | 10 31 files changed, 5353 insertions(+), 782 deletions(-)
Title: Generalized Fiducial Inference for Normal Linear Mixed Models
Description: Simulation of the generalized fiducial distribution for normal linear mixed models with interval data. Fiducial inference is somehow similar to Bayesian inference, in the sense that it is based on a distribution that represents the uncertainty about the parameters, like the posterior distribution in Bayesian statistics. It does not require a prior distribution, and it yields results close to frequentist results. Reference: Cisewski and Hannig (2012) <doi:10.1214/12-AOS1030>.
Author: Stéphane Laurent [aut, cre],
Jessi Cisewski [aut, ctb] (author of the original Matlab code,
<https://orcid.org/0000-0002-9656-2272>)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between gfilmm versions 1.0.1 dated 2020-11-13 and 2.0.0 dated 2020-12-01
DESCRIPTION | 12 - MD5 | 43 ++--- NAMESPACE | 2 NEWS.md | 7 R/RcppExports.R | 8 - R/gfilmm.R | 50 +----- R/inference.R | 38 ++++ R/predictive.R | 9 - README.md | 4 inst/doc/the-gfilmm-package.R | 21 +- inst/doc/the-gfilmm-package.Rmd | 34 ++-- inst/doc/the-gfilmm-package.html | 198 ++++++++++-------------- man/gfiCDF.Rd | 4 man/gfiConfInt.Rd | 4 man/gfiQuantile.Rd |only man/gfiSummary.Rd | 6 man/gfilmm.Rd | 19 ++ man/gfilmmPredictive.Rd | 4 src/Makevars | 2 src/Makevars.win | 4 src/RcppExports.cpp | 26 +-- src/gfilmm.cpp | 311 +++++++++++++++++++++++---------------- vignettes/the-gfilmm-package.Rmd | 34 ++-- 23 files changed, 467 insertions(+), 373 deletions(-)
Title: Post-Processing of the Markov Chain Simulated by 'ChronoModel',
'Oxcal' or 'BCal'
Description: Provides a list of functions for the statistical analysis of archaeological dates and groups of dates. It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior distribution of a series of dates. Such output can be simulated by different applications as for instance 'ChronoModel' (see <https://chronomodel.com/>), 'Oxcal' (see <https://c14.arch.ox.ac.uk/oxcal.html>) or 'BCal' (see <https://bcal.shef.ac.uk/>). The only requirement is to have a csv file containing a sample from the posterior distribution. Note that this package interacts with data available through the 'ArchaeoPhases.dataset' package which is available in a separate repository. The size of the 'ArchaeoPhases.dataset' package is approximately 4 MB.
Author: Anne Philippe [aut, cre],
Marie-Anne Vibet [aut],
Thomas S. Dye [ctb]
Maintainer: Anne Philippe <anne.philippe@univ-nantes.fr>
Diff between ArchaeoPhases versions 1.4.5 dated 2020-05-29 and 1.5 dated 2020-12-01
ArchaeoPhases-1.4.5/ArchaeoPhases/README |only ArchaeoPhases-1.4.5/ArchaeoPhases/data/Fishpond.RData |only ArchaeoPhases-1.4.5/ArchaeoPhases/data/KADatesChronoModel.RData |only ArchaeoPhases-1.4.5/ArchaeoPhases/data/KADatesOxcal.RData |only ArchaeoPhases-1.4.5/ArchaeoPhases/data/KAPhasesChronoModel.RData |only ArchaeoPhases-1.4.5/ArchaeoPhases/data/datalist |only ArchaeoPhases-1.4.5/ArchaeoPhases/man/Fishpond.Rd |only ArchaeoPhases-1.4.5/ArchaeoPhases/man/KADatesChronoModel.Rd |only ArchaeoPhases-1.4.5/ArchaeoPhases/man/KADatesOxcal.Rd |only ArchaeoPhases-1.4.5/ArchaeoPhases/man/KAPhasesChronoModel.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/DESCRIPTION | 26 ArchaeoPhases-1.5/ArchaeoPhases/MD5 | 199 - ArchaeoPhases-1.5/ArchaeoPhases/NAMESPACE | 106 ArchaeoPhases-1.5/ArchaeoPhases/NEWS | 46 ArchaeoPhases-1.5/ArchaeoPhases/R/ArchaeoPhases.R |only ArchaeoPhases-1.5/ArchaeoPhases/R/CreateMinMaxGroup.R | 61 ArchaeoPhases-1.5/ArchaeoPhases/R/CredibleInterval.R | 90 ArchaeoPhases-1.5/ArchaeoPhases/R/DatesHiatus.R | 132 ArchaeoPhases-1.5/ArchaeoPhases/R/ImportCSV.BCal.R | 32 ArchaeoPhases-1.5/ArchaeoPhases/R/ImportCSV.R | 337 + ArchaeoPhases-1.5/ArchaeoPhases/R/MarginalPlot.R | 397 +- ArchaeoPhases-1.5/ArchaeoPhases/R/MarginalProba.R | 46 ArchaeoPhases-1.5/ArchaeoPhases/R/MarginalStatistics.R | 241 + ArchaeoPhases-1.5/ArchaeoPhases/R/MultiCredibleInterval.R | 116 ArchaeoPhases-1.5/ArchaeoPhases/R/MultiDatesPlot.R | 293 + ArchaeoPhases-1.5/ArchaeoPhases/R/MultiHPD.R | 148 ArchaeoPhases-1.5/ArchaeoPhases/R/MultiMarginalPlot.R |only ArchaeoPhases-1.5/ArchaeoPhases/R/MultiPhasePlot.R | 113 ArchaeoPhases-1.5/ArchaeoPhases/R/MultiPhaseTimeRange.R | 68 ArchaeoPhases-1.5/ArchaeoPhases/R/MultiPhasesGap.R | 63 ArchaeoPhases-1.5/ArchaeoPhases/R/MultiPhasesTransition.R | 65 ArchaeoPhases-1.5/ArchaeoPhases/R/MultiSuccessionPlot.R | 154 ArchaeoPhases-1.5/ArchaeoPhases/R/OccurrencePlot.R | 319 + ArchaeoPhases-1.5/ArchaeoPhases/R/PhaseDurationPlot.R | 91 ArchaeoPhases-1.5/ArchaeoPhases/R/PhasePlot.R | 99 ArchaeoPhases-1.5/ArchaeoPhases/R/PhaseStatistics.R | 161 ArchaeoPhases-1.5/ArchaeoPhases/R/PhaseTimeRange.R | 47 ArchaeoPhases-1.5/ArchaeoPhases/R/PhasesGap.R | 130 ArchaeoPhases-1.5/ArchaeoPhases/R/PhasesTransition.R | 33 ArchaeoPhases-1.5/ArchaeoPhases/R/S3Classes.R |only ArchaeoPhases-1.5/ArchaeoPhases/R/Sensitivity.R |only ArchaeoPhases-1.5/ArchaeoPhases/R/SuccessionPlot.R | 114 ArchaeoPhases-1.5/ArchaeoPhases/R/TempoActivityPlot.R | 258 + ArchaeoPhases-1.5/ArchaeoPhases/R/TempoPlot.R | 402 +- ArchaeoPhases-1.5/ArchaeoPhases/R/coda.mcmc.R | 87 ArchaeoPhases-1.5/ArchaeoPhases/R/data.R |only ArchaeoPhases-1.5/ArchaeoPhases/R/globals.R |only ArchaeoPhases-1.5/ArchaeoPhases/R/zzz.R |only ArchaeoPhases-1.5/ArchaeoPhases/README.md |only ArchaeoPhases-1.5/ArchaeoPhases/build/vignette.rds |binary ArchaeoPhases-1.5/ArchaeoPhases/data/Events.RData |binary ArchaeoPhases-1.5/ArchaeoPhases/data/Phases.RData |binary ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/GroupsOfDates.R | 12 ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/GroupsOfDates.Rmd | 38 ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/GroupsOfDates.html | 1834 ++++++++- ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/Introduction.R | 15 ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/Introduction.Rmd | 77 ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/Introduction.html | 1914 ++++++++-- ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/SeriesOfDates.R | 17 ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/SeriesOfDates.Rmd | 26 ArchaeoPhases-1.5/ArchaeoPhases/inst/doc/SeriesOfDates.html | 1812 ++++++++- ArchaeoPhases-1.5/ArchaeoPhases/inst/shiny/server.R | 38 ArchaeoPhases-1.5/ArchaeoPhases/man/ArchaeoPhases.Rd | 30 ArchaeoPhases-1.5/ArchaeoPhases/man/CreateMinMaxGroup.Rd | 65 ArchaeoPhases-1.5/ArchaeoPhases/man/CredibleInterval.Rd | 30 ArchaeoPhases-1.5/ArchaeoPhases/man/DatesHiatus.Rd | 32 ArchaeoPhases-1.5/ArchaeoPhases/man/Events.Rd | 41 ArchaeoPhases-1.5/ArchaeoPhases/man/ImportCSV.BCal.Rd | 43 ArchaeoPhases-1.5/ArchaeoPhases/man/ImportCSV.Rd | 109 ArchaeoPhases-1.5/ArchaeoPhases/man/MarginalPlot.Rd | 100 ArchaeoPhases-1.5/ArchaeoPhases/man/MarginalProba.Rd | 35 ArchaeoPhases-1.5/ArchaeoPhases/man/MarginalStatistics.Rd | 60 ArchaeoPhases-1.5/ArchaeoPhases/man/MultiCredibleInterval.Rd | 42 ArchaeoPhases-1.5/ArchaeoPhases/man/MultiDatesPlot.Rd | 156 ArchaeoPhases-1.5/ArchaeoPhases/man/MultiHPD.Rd | 51 ArchaeoPhases-1.5/ArchaeoPhases/man/MultiMarginalPlot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/MultiPhasePlot.Rd | 83 ArchaeoPhases-1.5/ArchaeoPhases/man/MultiPhaseTimeRange.Rd | 65 ArchaeoPhases-1.5/ArchaeoPhases/man/MultiPhasesGap.Rd | 70 ArchaeoPhases-1.5/ArchaeoPhases/man/MultiPhasesTransition.Rd | 66 ArchaeoPhases-1.5/ArchaeoPhases/man/MultiSuccessionPlot.Rd | 101 ArchaeoPhases-1.5/ArchaeoPhases/man/OccurrencePlot.Rd | 167 ArchaeoPhases-1.5/ArchaeoPhases/man/PhaseDurationPlot.Rd | 73 ArchaeoPhases-1.5/ArchaeoPhases/man/PhasePlot.Rd | 75 ArchaeoPhases-1.5/ArchaeoPhases/man/PhaseStatistics.Rd | 59 ArchaeoPhases-1.5/ArchaeoPhases/man/PhaseTimeRange.Rd | 29 ArchaeoPhases-1.5/ArchaeoPhases/man/Phases.Rd | 46 ArchaeoPhases-1.5/ArchaeoPhases/man/PhasesGap.Rd | 39 ArchaeoPhases-1.5/ArchaeoPhases/man/PhasesTransition.Rd | 36 ArchaeoPhases-1.5/ArchaeoPhases/man/SuccessionPlot.Rd | 85 ArchaeoPhases-1.5/ArchaeoPhases/man/TempoActivityPlot.Rd | 133 ArchaeoPhases-1.5/ArchaeoPhases/man/TempoPlot.Rd | 176 ArchaeoPhases-1.5/ArchaeoPhases/man/app_ArchaeoPhases.Rd | 31 ArchaeoPhases-1.5/ArchaeoPhases/man/coda.mcmc.Rd | 63 ArchaeoPhases-1.5/ArchaeoPhases/man/credible_interval.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/dates_hiatus.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/estimate_range.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/marginal_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/marginal_statistics.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/multi_credible_interval.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/multi_dates_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/multi_hpd.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/multi_marginal_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/multi_marginal_statistics.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/new_archaeophases_mcmc.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/new_archaeophases_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/occurrence_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/original_file.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/original_file.archaeophases_mcmc.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/original_file.archaeophases_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/phase_statistics.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/phases_gap.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/plot.archaeophases_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/read_bcal.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/read_chronomodel.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/read_oxcal.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/reproduce.archaeophases_mcmc.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/reproduce.archaeophases_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/tempo_activity_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/man/tempo_plot.Rd |only ArchaeoPhases-1.5/ArchaeoPhases/vignettes/GroupsOfDates.Rmd | 38 ArchaeoPhases-1.5/ArchaeoPhases/vignettes/Introduction.Rmd | 77 ArchaeoPhases-1.5/ArchaeoPhases/vignettes/SeriesOfDates.Rmd | 26 123 files changed, 10005 insertions(+), 2584 deletions(-)
Title: Local Adaptation and Evaluation of Digital Soil Maps
Description: Local adaptation and evaluation of digital soil maps in raster
format by use of point location soil property data.
Author: Kristin Piikki, Mats Söderström & John Mutua
Maintainer: Kristin Piikki <kristin.piikki@slu.se>
Diff between mapsRinteractive versions 1.0.0 dated 2019-05-13 and 1.0.1 dated 2020-12-01
DESCRIPTION | 12 +++++++----- MD5 | 17 +++++++++-------- R/mri.R | 2 +- README.md |only man/check.Rd | 11 +++++++++-- man/kth.Rd | 10 ++++++++-- man/mri.Rd | 16 +++++++++++++--- man/ordkrige.Rd | 16 +++++++++++++--- man/regkrige.Rd | 16 +++++++++++++--- man/reskrige.Rd | 16 +++++++++++++--- 10 files changed, 86 insertions(+), 30 deletions(-)
More information about mapsRinteractive at CRAN
Permanent link
Title: Graph-Constrained Functional Pruning Optimal Partitioning
Description: Penalized parametric change-point detection by functional pruning dynamic programming algorithm.
The successive means are constrained using a graph structure with edges of types null, up, down, std or abs. To each edge we can associate some additional properties: a minimal gap size, a penalty, some robust parameters (K,a). The user can also constrain the inferred means to lie between some minimal and maximal values. Data is modeled by a quadratic cost with possible use of a robust loss, biweight and Huber (see edge parameters K and a). Other losses are also available with log-linear representation or a log-log representation.
Author: Vincent Runge [aut, cre],
Toby Hocking [aut],
Guillem Rigaill [aut],
Gaetano Romano [aut],
Fatemeh Afghah [aut],
Paul Fearnhead [aut],
Michel Koskas [ctb],
Arnaud Liehrmann [ctb]
Maintainer: Vincent Runge <vincent.runge@univ-evry.fr>
Diff between gfpop versions 1.0.1 dated 2020-11-30 and 1.0.2 dated 2020-12-01
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- src/Cost.cpp | 2 -- src/Cost.h | 1 - src/ListPiece.cpp | 2 +- src/ListPiece.h | 1 - src/Omega.cpp | 2 +- src/Piece.cpp | 1 - src/Piece.h | 1 + src/main.cpp | 2 +- 10 files changed, 16 insertions(+), 20 deletions(-)
Title: Distance Sampling Detection Function and Abundance Estimation
Description: A simple way of fitting detection functions to distance sampling
data for both line and point transects. Adjustment term selection, left and
right truncation as well as monotonicity constraints and binning are
supported. Abundance and density estimates can also be calculated (via a
Horvitz-Thompson-like estimator) if survey area information is provided. See
Miller et al. (2019) <doi:10.18637/jss.v089.i01> for more information on
methods and <https://examples.distancesampling.org/> for example analyses.
Author: David Lawrence Miller
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>
Diff between Distance versions 1.0.1 dated 2020-07-31 and 1.0.2 dated 2020-12-01
DESCRIPTION | 14 ++++++++------ MD5 | 26 +++++++++++++------------- NEWS | 7 +++++++ R/Distance-package.R | 2 +- R/add_df_covar_line.R | 16 ++++++++++++---- R/bootdht.R | 33 ++++++++++++++++++++++++++++++--- R/ds.gof.R | 27 +++++++++------------------ R/gof_ds.R | 16 ++++++++++++---- README.md | 4 ++-- man/Distance-package.Rd | 2 +- man/add_df_covar_line.Rd | 20 +++++++++++++++----- man/bootdht.Rd | 5 ++++- man/ds.gof.Rd | 26 ++++++++------------------ man/gof_ds.Rd | 21 +++++++++++++++++++-- 14 files changed, 141 insertions(+), 78 deletions(-)
Title: Computation of P Values and Bayes Factors for Conditioning Data
Description: Set of functions for the easy analyses of conditioning data.
Author: Angelos-Miltiadis Krypotos <amkrypotos@gmail.com>
Maintainer: Angelos-Miltiadis Krypotos <amkrypotos@gmail.com>
Diff between condir versions 0.1.2 dated 2020-03-06 and 0.1.3 dated 2020-12-01
DESCRIPTION | 16 ++--- MD5 | 25 ++++---- NEWS.md | 16 ++++- R/csRobustnessPlot.R | 6 - README.md | 1 build/vignette.rds |binary inst/doc/condir-examples.R | 8 -- inst/doc/condir-examples.Rmd | 22 ++----- inst/doc/condir-examples.html | 127 +++++++++++++++++++++++++++++++----------- man/csRobustnessPlot.Rd | 4 - tests |only vignettes/condir-examples.Rmd | 22 ++----- 12 files changed, 155 insertions(+), 92 deletions(-)
Title: Australian Government Bureau of Meteorology ('BOM') Data Client
Description: Provides functions to interface with Australian Government Bureau
of Meteorology ('BOM') data, fetching data and returning a data frame of
precis forecasts, historical and current weather data from stations,
agriculture bulletin data, 'BOM' 0900 or 1500 weather bulletins and
downloading and importing radar and satellite imagery files. Data (c)
Australian Government Bureau of Meteorology Creative Commons (CC)
Attribution 3.0 licence or Public Access Licence (PAL) as appropriate. See
<http://www.bom.gov.au/other/copyright.shtml> for further details.
Author: Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Jonathan Carroll [aut] (<https://orcid.org/0000-0002-1404-5264>),
James Goldie [aut] (<https://orcid.org/0000-0002-5024-6207>),
Dean Marchiori [aut],
Paul Melloy [aut] (<https://orcid.org/0000-0003-4253-7167>),
Mark Padgham [aut, rev] (<https://orcid.org/0000-0003-2172-5265>),
Hugh Parsonage [aut] (<https://orcid.org/0000-0003-4055-0835>),
Keith Pembleton [aut] (<https://orcid.org/0000-0002-1896-4516>),
James Balamuta [ctb] (<https://orcid.org/0000-0003-2826-8458>),
Brooke Anderson [rev] (<https://orcid.org/0000-0002-5012-9035>)
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between bomrang versions 0.7.2 dated 2020-11-15 and 0.7.3 dated 2020-12-01
DESCRIPTION | 10 MD5 | 72 NAMESPACE | 2 NEWS.md | 18 R/get_current_weather.R | 2 R/get_radar_imagery.R | 45 R/get_satellite_imagery.R | 24 R/internal_functions.R | 1 R/zzz.R | 9 build/vignette.rds |binary inst/doc/bomrang.Rmd | 2145 ++++++++++++---------- inst/doc/bomrang.html | 2615 +++++++++++++--------------- inst/doc/use_case.Rmd | 64 inst/doc/use_case.html | 242 -- inst/extdata/AAC_codes.rda |binary inst/extdata/JSONurl_site_list.rda |binary inst/extdata/current_stations_site_list.rda |binary inst/extdata/marine_AAC_codes.rda |binary inst/extdata/radar_locations.rda |binary man/get_available_radar.Rd | 6 man/get_radar_imagery.Rd | 20 man/get_satellite_imagery.Rd | 10 man/reexports.Rd | 4 tests/testthat/test-file_caching.R | 6 tests/testthat/test-get_current_weather.R | 7 tests/testthat/test-get_radar_imagery.R | 4 tests/testthat/test-get_satellite_imagery.R | 2 vignettes/bomrang.Rmd | 2145 ++++++++++++---------- vignettes/bomrang.Rmd.orig | 93 vignettes/completeness_map-1.png |binary vignettes/get_radar_imagery-1.png |binary vignettes/get_satellite_imagery-1.png |binary vignettes/plot_satellite-1.png |only vignettes/precompile.R | 3 vignettes/use_case.Rmd | 64 vignettes/use_case.Rmd.orig | 64 vignettes/vignettes |only vignettes/years_available-1.png |binary 38 files changed, 3844 insertions(+), 3833 deletions(-)
Title: Generate Isolines and Isobands from Regularly Spaced Elevation
Grids
Description: A fast C++ implementation to generate contour lines (isolines) and
contour polygons (isobands) from regularly spaced grids containing elevation data.
Author: Claus O. Wilke [aut, cre] (<https://orcid.org/0000-0002-7470-9261>),
Thomas Lin Pedersen [aut] (<https://orcid.org/0000-0002-5147-4711>)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between isoband versions 0.2.2 dated 2020-06-20 and 0.2.3 dated 2020-12-01
DESCRIPTION | 11 - MD5 | 48 ++-- NEWS.md | 4 R/catch-routine-registration.R | 2 R/iso-to-sfg.R | 10 - README.md | 159 +++++++-------- build/vignette.rds |binary inst/doc/isoband1.html | 259 +++++++++++++------------ inst/doc/isoband2.R | 10 - inst/doc/isoband2.Rmd | 12 - inst/doc/isoband2.html | 279 ++++++++++++++-------------- inst/doc/isoband3.html | 251 +++++++++++++------------ man/figures/README-basic-example-plot-1.png |binary man/figures/README-volcano-1.png |binary man/iso_to_sfg.Rd | 10 - src/init.cpp | 4 src/test-clip-lines.cpp | 5 tests/testthat/test-clip-lines.R | 2 tests/testthat/test-cpp.R | 5 tests/testthat/test-iso-to-sfg.R | 2 tests/testthat/test-isobands.R | 4 tests/testthat/test-isolines-grob.R | 2 tests/testthat/test-isolines.R | 2 tests/testthat/test-label-placer.R | 2 vignettes/isoband2.Rmd | 12 - 25 files changed, 557 insertions(+), 538 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.7 dated 2020-09-15 and 0.3.8 dated 2020-12-01
DESCRIPTION | 10 +- MD5 | 60 +++++++++------- R/capabilities.R | 19 ++++- R/completion.R | 3 R/definition.R | 16 ++-- R/document.R | 11 +-- R/handlers-general.R | 9 +- R/handlers-langfeatures.R | 21 ++++- R/handlers-textsync.R | 1 R/hover.R | 53 ++++++++++---- R/languagebase.R | 36 +++++++--- R/languageserver.R | 4 + R/namespace.R | 8 +- R/references.R |only R/rename.R |only R/workspace.R | 4 - README.md | 33 ++++++++- tests/testthat/helper-utils.R | 59 ++++++++++++++-- tests/testthat/test-color.R | 4 - tests/testthat/test-completion.R | 30 ++++---- tests/testthat/test-definition.R | 78 ++++++++++++++++++++-- tests/testthat/test-folding.R | 8 +- tests/testthat/test-formatting.R | 14 +-- tests/testthat/test-highlight.R | 4 - tests/testthat/test-hover.R | 131 ++++++++++++++++++++++++++++++++++--- tests/testthat/test-link.R | 13 ++- tests/testthat/test-lintr.R | 4 - tests/testthat/test-null-root.R | 2 tests/testthat/test-references.R |only tests/testthat/test-rename.R |only tests/testthat/test-signature.R | 7 + tests/testthat/test-symbol.R | 9 +- tests/testthat/test-unicode-path.R | 4 - 33 files changed, 496 insertions(+), 159 deletions(-)
More information about languageserver at CRAN
Permanent link
Title: Artificial Neural Networks for Anomaly Detection
Description: Training of neural networks for classification and regression tasks
using mini-batch gradient descent. Special features include a function for
training autoencoders, which can be used to detect anomalies, and some
related plotting functions. Multiple activation functions are supported,
including tanh, relu, step and ramp. For the use of the step and ramp
activation functions in detecting anomalies using autoencoders, see
Hawkins et al. (2002) <doi:10.1007/3-540-46145-0_17>. Furthermore,
several loss functions are supported, including robust ones such as Huber
and pseudo-Huber loss, as well as L1 and L2 regularization. The possible
options for optimization algorithms are RMSprop, Adam and SGD with momentum.
The package contains a vectorized C++ implementation that facilitates
fast training through mini-batch learning.
Author: Bart Lammers
Maintainer: Bart Lammers <bart.f.lammers@gmail.com>
Diff between ANN2 versions 2.3.3 dated 2020-03-14 and 2.3.4 dated 2020-12-01
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++---------------- R/catch-routine-registration.R | 2 +- R/plotting.R | 3 +-- README.md | 5 +++-- man/autoencoder.Rd | 31 ++++++++++++++++++++++++------- man/compression_plot.Rd | 3 +-- man/neuralnetwork.Rd | 34 ++++++++++++++++++++++++++-------- man/plot.ANN.Rd | 2 +- man/setOptimParams.Rd | 13 +++++++++++-- man/setTrainParams.Rd | 3 +-- man/train.Rd | 12 ++++++++++-- src/Activations.h | 1 + src/Loss.h | 1 + src/Makevars | 3 +-- src/Optimizer.h | 1 + src/RcppExports.cpp | 4 ++-- 17 files changed, 106 insertions(+), 54 deletions(-)
Title: Mark-Recapture Distance Sampling
Description: Animal abundance estimation via conventional, multiple covariate
and mark-recapture distance sampling (CDS/MCDS/MRDS). Detection function
fitting is performed via maximum likelihood. Also included are diagnostics
and plotting for fitted detection functions. Abundance estimation is via a
Horvitz-Thompson-like estimator.
Author: Jeff Laake <jeff.laake@noaa.gov>, David Borchers
<dlb@st-and.ac.uk>, Len Thomas <len.thomas@st-and.ac.uk>, David
Miller <dave@ninepointeightone.net> and Jon Bishop
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>
Diff between mrds versions 2.2.3 dated 2020-07-31 and 2.2.4 dated 2020-12-01
mrds-2.2.3/mrds/man/AIC.ds.Rd |only mrds-2.2.3/mrds/man/logLik.ds.Rd |only mrds-2.2.4/mrds/DESCRIPTION | 8 ++-- mrds-2.2.4/mrds/MD5 | 36 ++++++++++----------- mrds-2.2.4/mrds/NAMESPACE | 4 +- mrds-2.2.4/mrds/NEWS | 7 ++++ mrds-2.2.4/mrds/R/AIC.R | 3 - mrds-2.2.4/mrds/R/add_df_covar_line.R | 51 +++++++++++++++++++++++-------- mrds-2.2.4/mrds/R/check.mono.R | 2 - mrds-2.2.4/mrds/R/ddf.ds.R | 20 ++++++------ mrds-2.2.4/mrds/R/logLik.R | 3 - mrds-2.2.4/mrds/R/predict.io.R | 16 +++++---- mrds-2.2.4/mrds/R/process.data.R | 48 ++++++++++++++--------------- mrds-2.2.4/mrds/R/solvecov.R | 4 +- mrds-2.2.4/mrds/README.md | 6 +-- mrds-2.2.4/mrds/man/AIC.ddf.Rd |only mrds-2.2.4/mrds/man/add_df_covar_line.Rd | 16 ++++++--- mrds-2.2.4/mrds/man/check.mono.Rd | 2 - mrds-2.2.4/mrds/man/ddf.ds.Rd | 10 +++--- mrds-2.2.4/mrds/man/logLik.ddf.Rd |only mrds-2.2.4/mrds/man/solvecov.Rd | 4 +- 21 files changed, 139 insertions(+), 101 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK),
Yves R. Sagaert [ctb] (Visiting Research at Centre for Marketing
Analytics and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.6.3 dated 2020-10-20 and 0.6.4 dated 2020-12-01
greybox-0.6.3/greybox/inst/doc/alm.R |only greybox-0.6.4/greybox/DESCRIPTION | 10 greybox-0.6.4/greybox/MD5 | 52 +- greybox-0.6.4/greybox/NAMESPACE | 5 greybox-0.6.4/greybox/NEWS | 21 greybox-0.6.4/greybox/R/alm.R | 136 +++-- greybox-0.6.4/greybox/R/bcnorm.R | 2 greybox-0.6.4/greybox/R/coefbootstrap.R | 30 - greybox-0.6.4/greybox/R/logitnorm.R |only greybox-0.6.4/greybox/R/methods.R | 165 ++++-- greybox-0.6.4/greybox/README.md | 3 greybox-0.6.4/greybox/build/partial.rdb |binary greybox-0.6.4/greybox/build/vignette.rds |binary greybox-0.6.4/greybox/inst/doc/alm.Rmd | 246 +++++++++- greybox-0.6.4/greybox/inst/doc/alm.html | 490 +------------------- greybox-0.6.4/greybox/inst/doc/greybox.Rmd | 5 greybox-0.6.4/greybox/inst/doc/greybox.html | 11 greybox-0.6.4/greybox/inst/doc/maUsingGreybox.html | 4 greybox-0.6.4/greybox/inst/doc/ro.R | 5 greybox-0.6.4/greybox/inst/doc/ro.Rmd | 9 greybox-0.6.4/greybox/inst/doc/ro.html | 106 +--- greybox-0.6.4/greybox/man/alm.Rd | 28 - greybox-0.6.4/greybox/man/bcnorm-distribution.Rd | 2 greybox-0.6.4/greybox/man/logitnorm-distribution.Rd |only greybox-0.6.4/greybox/man/plot.greybox.Rd | 2 greybox-0.6.4/greybox/vignettes/alm.Rmd | 246 +++++++++- greybox-0.6.4/greybox/vignettes/greybox.Rmd | 5 greybox-0.6.4/greybox/vignettes/ro.Rmd | 9 28 files changed, 870 insertions(+), 722 deletions(-)
Title: Large-Scale Social Network Analysis
Description: We present an implementation of the algorithms required to simulate
large-scale social networks and retrieve their most relevant metrics. Details
can be found in the accompanying scientific paper on the Journal
of Statistical Software, <doi:10.18637/jss.v096.i07>.
Author: Nazrul Shaikh [aut, cre],
Xu Dong [aut],
Luis Castro [aut],
Christian Llano [ctb]
Maintainer: Nazrul Shaikh <networkgroupr@gmail.com>
Diff between fastnet versions 0.1.6 dated 2018-09-11 and 1.0.0 dated 2020-12-01
fastnet |only 1 file changed
Title: Community Dynamics Metrics
Description: Univariate and multivariate temporal and spatial diversity indices,
rank abundance curves, and community stability measures. The functions
implement measures that are either explicitly temporal and include the
option to calculate them over multiple replicates, or spatial and include
the option to calculate them over multiple time points. Functions fall into
five categories: static diversity indices, temporal diversity indices,
spatial diversity indices, rank abundance curves, and community stability
measures. The diversity indices are temporal and spatial analogs to
traditional diversity indices. Specifically, the package includes functions
to calculate community richness, evenness and diversity at a given point in
space and time. In addition, it contains functions to calculate species
turnover, mean rank shifts, and lags in community similarity between two
time points. Details of the methods are available in
Hallett et al. (2016) <doi:10.1111/2041-210X.12569> and Avolio
et al. (2019) <doi:10.1002/ecs2.2881>.
Author: Lauren Hallett [aut] (<https://orcid.org/0000-0002-0718-0257>),
Meghan L. Avolio [aut] (<https://orcid.org/0000-0002-2649-9159>),
Ian T. Carroll [aut] (<https://orcid.org/0000-0002-3616-810X>),
Sydney K. Jones [aut],
A. Andrew M. MacDonald [aut] (<https://orcid.org/0000-0003-1162-169X>),
Dan F. B. Flynn [aut] (<https://orcid.org/0000-0002-2978-5257>),
Peter Slaughter [aut] (<https://orcid.org/0000-0002-2192-403X>),
Julie Ripplinger [aut] (<https://orcid.org/0000-0002-2771-6637>),
Scott L. Collins [aut] (<https://orcid.org/0000-0002-0193-2892>),
Corinna Gries [aut] (<https://orcid.org/0000-0002-9091-6543>),
Matthew B. Jones [aut, cre] (<https://orcid.org/0000-0003-0077-4738>)
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Diff between codyn versions 2.0.4 dated 2020-05-06 and 2.0.5 dated 2020-12-01
DESCRIPTION | 54 ++-- MD5 | 24 +- NEWS | 12 + R/community_diversity.R | 6 R/community_structure.R | 4 R/synchrony.R | 4 README.md | 39 +-- build/vignette.rds |binary inst/doc/Community_Stability_Metrics.Rmd | 2 inst/doc/Community_Stability_Metrics.html | 216 ++++++++++++------ inst/doc/Temporal_Diversity_Indices.html | 352 ++++++++++++++++-------------- inst/doc/codyn_overview.html | 68 +++++ vignettes/Community_Stability_Metrics.Rmd | 2 13 files changed, 478 insertions(+), 305 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis, especially raster data. Methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. The package is very similar to the 'raster' package; but 'terra' is simpler and faster.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Karl Forner [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 0.9-8 dated 2020-11-13 and 0.9-11 dated 2020-12-01
terra-0.9-11/terra/DESCRIPTION | 10 terra-0.9-11/terra/MD5 | 155 +++--- terra-0.9-11/terra/NAMESPACE | 4 terra-0.9-11/terra/R/Agenerics.R | 23 terra-0.9-11/terra/R/RcppExports.R | 20 terra-0.9-11/terra/R/SpatDataSet.R | 10 terra-0.9-11/terra/R/aggregate.R | 2 terra-0.9-11/terra/R/app.R | 4 terra-0.9-11/terra/R/arith.R | 2 terra-0.9-11/terra/R/cells.R | 11 terra-0.9-11/terra/R/coerce.R | 44 + terra-0.9-11/terra/R/crosstab.R |only terra-0.9-11/terra/R/focal.R | 2 terra-0.9-11/terra/R/gdal.R | 98 +++- terra-0.9-11/terra/R/generics.R | 141 +++--- terra-0.9-11/terra/R/interpolate.R | 2 terra-0.9-11/terra/R/lapp.R | 4 terra-0.9-11/terra/R/match.R | 2 terra-0.9-11/terra/R/merge.R | 25 + terra-0.9-11/terra/R/names.R | 24 - terra-0.9-11/terra/R/ncdf.R |only terra-0.9-11/terra/R/plotLegend.R | 20 terra-0.9-11/terra/R/plotVector.R | 8 terra-0.9-11/terra/R/plot_legend.R | 4 terra-0.9-11/terra/R/plot_raster.R | 101 ++++ terra-0.9-11/terra/R/predict.R | 2 terra-0.9-11/terra/R/rast.R | 14 terra-0.9-11/terra/R/rasterize.R |only terra-0.9-11/terra/R/show.R | 61 ++ terra-0.9-11/terra/R/spatvec.R | 20 terra-0.9-11/terra/R/tapp.R | 2 terra-0.9-11/terra/R/time.R | 54 +- terra-0.9-11/terra/R/vect.R | 39 + terra-0.9-11/terra/man/as.data.frame.Rd | 20 terra-0.9-11/terra/man/as.spatvector.Rd |only terra-0.9-11/terra/man/cells.Rd | 13 terra-0.9-11/terra/man/coerce.Rd | 47 -- terra-0.9-11/terra/man/crosstab.Rd |only terra-0.9-11/terra/man/desc.Rd |only terra-0.9-11/terra/man/flip.Rd | 20 terra-0.9-11/terra/man/gdal_warnings.Rd |only terra-0.9-11/terra/man/geometry.Rd | 10 terra-0.9-11/terra/man/init.Rd | 2 terra-0.9-11/terra/man/interpolate.Rd | 2 terra-0.9-11/terra/man/names.Rd | 12 terra-0.9-11/terra/man/plot.Rd | 14 terra-0.9-11/terra/man/plotVector.Rd | 4 terra-0.9-11/terra/man/project.Rd | 16 terra-0.9-11/terra/man/rasterize.Rd | 9 terra-0.9-11/terra/man/sds.Rd | 9 terra-0.9-11/terra/man/select.Rd | 2 terra-0.9-11/terra/man/separate.Rd |only terra-0.9-11/terra/man/shift.Rd | 2 terra-0.9-11/terra/man/terra-package.Rd | 5 terra-0.9-11/terra/man/time.Rd | 3 terra-0.9-11/terra/man/units.Rd |only terra-0.9-11/terra/man/vect.Rd | 11 terra-0.9-11/terra/src/RcppExports.cpp | 59 ++ terra-0.9-11/terra/src/RcppFunctions.cpp |only terra-0.9-11/terra/src/RcppModule.cpp | 112 ++-- terra-0.9-11/terra/src/arith.cpp | 2 terra-0.9-11/terra/src/gdal_info.cpp | 154 ++++++ terra-0.9-11/terra/src/gdal_info.h | 4 terra-0.9-11/terra/src/mosaic.cpp | 161 ++++++ terra-0.9-11/terra/src/ncdf_util.cpp |only terra-0.9-11/terra/src/raster_methods.cpp | 173 +++++++ terra-0.9-11/terra/src/raster_stats.cpp | 4 terra-0.9-11/terra/src/read_gdal.cpp | 649 +--------------------------- terra-0.9-11/terra/src/read_ogr.cpp | 429 +++++++++--------- terra-0.9-11/terra/src/sample.cpp | 2 terra-0.9-11/terra/src/sources.cpp | 15 terra-0.9-11/terra/src/spatBase.h | 26 - terra-0.9-11/terra/src/spatDataframe.cpp | 4 terra-0.9-11/terra/src/spatRaster.cpp | 138 ++++- terra-0.9-11/terra/src/spatRaster.h | 55 +- terra-0.9-11/terra/src/spatRasterMultiple.h | 22 terra-0.9-11/terra/src/spatVector.cpp | 93 +++- terra-0.9-11/terra/src/spatVector.h | 5 terra-0.9-11/terra/src/string_utils.cpp | 61 +- terra-0.9-11/terra/src/string_utils.h | 4 terra-0.9-11/terra/src/terrain.cpp | 4 terra-0.9-11/terra/src/time.cpp |only terra-0.9-11/terra/src/time.h |only terra-0.9-8/terra/R/plotRaster.R |only terra-0.9-8/terra/man/gdal_info.Rd |only terra-0.9-8/terra/src/gdal_errors.cpp |only terra-0.9-8/terra/src/gdal_errors.h |only 87 files changed, 1941 insertions(+), 1344 deletions(-)
Title: 'dplyr'-Like Syntax for Summary Statistics of Survey Data
Description: Use piping, verbs like 'group_by' and 'summarize', and other
'dplyr' inspired syntactic style when calculating summary statistics on survey
data using functions from the 'survey' package.
Author: Greg Freedman Ellis [aut, cre],
Thomas Lumley [ctb],
Tomasz Żółtak [ctb],
Ben Schneider [aut, ctb],
Pavel N. Krivitsky [ctb]
Maintainer: Greg Freedman Ellis <greg.freedman@gmail.com>
Diff between srvyr versions 0.4.0 dated 2020-07-30 and 1.0.0 dated 2020-12-01
srvyr-0.4.0/srvyr/R/s3_register.R |only srvyr-0.4.0/srvyr/man/current_svy.Rd |only srvyr-1.0.0/srvyr/DESCRIPTION | 18 srvyr-1.0.0/srvyr/MD5 | 86 +- srvyr-1.0.0/srvyr/NAMESPACE | 77 +- srvyr-1.0.0/srvyr/NEWS.md | 28 srvyr-1.0.0/srvyr/R/as_survey.r | 12 srvyr-1.0.0/srvyr/R/cascade.r | 4 srvyr-1.0.0/srvyr/R/group-by.r | 82 ++ srvyr-1.0.0/srvyr/R/group_map.R |only srvyr-1.0.0/srvyr/R/manip.r | 63 + srvyr-1.0.0/srvyr/R/split_and_nest.R |only srvyr-1.0.0/srvyr/R/summarise.r | 173 +--- srvyr-1.0.0/srvyr/R/survey_statistics.r | 478 +++---------- srvyr-1.0.0/srvyr/R/survey_statistics_helpers.R | 122 --- srvyr-1.0.0/srvyr/R/svy_context.R | 110 ++ srvyr-1.0.0/srvyr/R/utils.r | 4 srvyr-1.0.0/srvyr/README.md | 20 srvyr-1.0.0/srvyr/build/vignette.rds |binary srvyr-1.0.0/srvyr/inst/doc/extending-srvyr.R | 37 - srvyr-1.0.0/srvyr/inst/doc/extending-srvyr.Rmd | 77 -- srvyr-1.0.0/srvyr/inst/doc/extending-srvyr.html | 183 ++-- srvyr-1.0.0/srvyr/inst/doc/srvyr-database.Rmd | 2 srvyr-1.0.0/srvyr/inst/doc/srvyr-database.html | 30 srvyr-1.0.0/srvyr/inst/doc/srvyr-vs-survey.Rmd | 2 srvyr-1.0.0/srvyr/inst/doc/srvyr-vs-survey.html | 18 srvyr-1.0.0/srvyr/man/as_survey.Rd | 3 srvyr-1.0.0/srvyr/man/cascade.Rd | 4 srvyr-1.0.0/srvyr/man/cur_svy.Rd |only srvyr-1.0.0/srvyr/man/dplyr_single.Rd | 14 srvyr-1.0.0/srvyr/man/group_map_dfr.Rd |only srvyr-1.0.0/srvyr/man/groups.Rd | 6 srvyr-1.0.0/srvyr/man/reexports.Rd |only srvyr-1.0.0/srvyr/man/summarise.Rd | 12 srvyr-1.0.0/srvyr/man/survey_mean.Rd | 17 srvyr-1.0.0/srvyr/man/survey_quantile.Rd | 7 srvyr-1.0.0/srvyr/man/survey_ratio.Rd | 4 srvyr-1.0.0/srvyr/man/survey_total.Rd | 6 srvyr-1.0.0/srvyr/man/survey_var.Rd | 6 srvyr-1.0.0/srvyr/man/unweighted.Rd | 48 - srvyr-1.0.0/srvyr/tests/testthat/test-group_map.R |only srvyr-1.0.0/srvyr/tests/testthat/test_as_survey.r | 15 srvyr-1.0.0/srvyr/tests/testthat/test_dplyr_verbs.R | 83 +- srvyr-1.0.0/srvyr/tests/testthat/test_survey_mean_factor.r | 12 srvyr-1.0.0/srvyr/tests/testthat/test_survey_statistics.r | 139 ++- srvyr-1.0.0/srvyr/vignettes/extending-srvyr.Rmd | 77 -- srvyr-1.0.0/srvyr/vignettes/srvyr-database.Rmd | 2 srvyr-1.0.0/srvyr/vignettes/srvyr-vs-survey.Rmd | 2 48 files changed, 995 insertions(+), 1088 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut, cre] (<https://orcid.org/0000-0002-1261-905X>),
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] (<https://orcid.org/0000-0003-1469-9396>),
Wil Davis [ctb],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Yitao Li <yitao@rstudio.com>
Diff between sparklyr versions 1.5.0 dated 2020-11-25 and 1.5.1 dated 2020-12-01
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NEWS.md | 19 +++++++++++++++++++ R/connection_spark.R | 8 +++++--- R/dplyr_spark.R | 16 ++++++++++++++-- R/livy_connection.R | 47 +++++++++++++++++++---------------------------- R/logs |only R/sdf_interface.R | 3 ++- README.md | 21 +++++++++++++++++++++ man/livy_config.Rd | 1 + man/spark-connections.Rd | 5 +++-- 11 files changed, 97 insertions(+), 48 deletions(-)
Title: Pena-Yohai Initial Estimator for Robust S-Regression
Description: Deterministic Pena-Yohai initial estimator for robust S estimators
of regression. The procedure is described in detail in
Pena, D., & Yohai, V. (1999) <doi:10.2307/2670164>.
Author: David Kepplinger [aut, cre],
Matias Salibian-Barrera [aut],
Gabriela Cohen Freue [aut]
Maintainer: David Kepplinger <david.kepplinger@gmail.com>
Diff between pyinit versions 1.0.4 dated 2020-11-08 and 1.1.1 dated 2020-12-01
DESCRIPTION | 8 ++-- MD5 | 20 ++++++------ NEWS.md | 8 ++++ src/BLAS.h | 65 +++++++++------------------------------- src/Makevars | 2 - src/fastPY.c | 50 ++++++++++++++++-------------- src/mscale.c | 2 + src/olsreg.c | 33 +++++++++++++++++--- src/olsreg.h | 4 +- tests/debug.R | 8 +++- tests/testthat/test-exact_fit.R | 53 ++++++++++++++++++++------------ 11 files changed, 138 insertions(+), 115 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.1.3 dated 2020-11-06 and 1.1.4 dated 2020-12-01
DESCRIPTION | 10 ++-- MD5 | 10 ++-- NEWS.md | 6 ++ R/kaplan.R | 12 +++-- build/vignette.rds |binary inst/doc/jsmodule.html | 106 ++++++++++++++++++------------------------------- 6 files changed, 65 insertions(+), 79 deletions(-)
Title: Improved Text Rendering Support for 'Grid' Graphics
Description: Provides support for rendering of formatted text using 'grid' graphics. Text can be
formatted via a minimal subset of 'Markdown', 'HTML', and inline 'CSS' directives, and it can be
rendered both with and without word wrap.
Author: Claus O. Wilke [aut, cre] (<https://orcid.org/0000-0002-7470-9261>)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between gridtext versions 0.1.1 dated 2020-02-24 and 0.1.2 dated 2020-12-01
gridtext-0.1.1/gridtext/R/catch-routine-registration.R |only gridtext-0.1.1/gridtext/src/test-layout.cpp |only gridtext-0.1.1/gridtext/src/test-line-breaker.cpp |only gridtext-0.1.1/gridtext/src/test-runner.cpp |only gridtext-0.1.1/gridtext/tests/figs/rich-text-grob |only gridtext-0.1.1/gridtext/tests/figs/text-box-grob |only gridtext-0.1.1/gridtext/tests/testthat/test-cpp.R |only gridtext-0.1.2/gridtext/DESCRIPTION | 16 gridtext-0.1.2/gridtext/MD5 | 53 +- gridtext-0.1.2/gridtext/NEWS.md | 4 gridtext-0.1.2/gridtext/R/textbox-grob.R | 1 gridtext-0.1.2/gridtext/README.md | 207 ++++------ gridtext-0.1.2/gridtext/man/figures/README-unnamed-chunk-4-1.png |binary gridtext-0.1.2/gridtext/man/figures/README-unnamed-chunk-5-1.png |binary gridtext-0.1.2/gridtext/man/figures/README-unnamed-chunk-6-1.png |binary gridtext-0.1.2/gridtext/man/figures/README-unnamed-chunk-7-1.png |binary gridtext-0.1.2/gridtext/man/figures/README-unnamed-chunk-8-1.png |binary gridtext-0.1.2/gridtext/man/richtext_grob.Rd | 2 gridtext-0.1.2/gridtext/src/RcppExports.cpp | 3 gridtext-0.1.2/gridtext/tests/figs/deps.txt | 2 gridtext-0.1.2/gridtext/tests/testthat/Rplots.pdf |binary gridtext-0.1.2/gridtext/tests/testthat/test-grid-constructors.R | 2 gridtext-0.1.2/gridtext/tests/testthat/test-grid-renderer.R | 2 gridtext-0.1.2/gridtext/tests/testthat/test-null-box.R | 2 gridtext-0.1.2/gridtext/tests/testthat/test-raster-box.R | 2 gridtext-0.1.2/gridtext/tests/testthat/test-rect-box.R | 2 gridtext-0.1.2/gridtext/tests/testthat/test-richtext-grob.R | 2 gridtext-0.1.2/gridtext/tests/testthat/test-text-details.R | 2 gridtext-0.1.2/gridtext/tests/testthat/test-textbox-grob.R | 2 gridtext-0.1.2/gridtext/tests/testthat/test-vbox.R | 2 30 files changed, 137 insertions(+), 169 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'PDF', 'Microsoft Word' and 'Microsoft PowerPoint'
documents from 'R Markdown'. Functions are provided to let users create tables, modify and format
their content. It also extends package 'officer' that does not contain any feature for customized
tabular reporting.
Author: David Gohel [aut, cre],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] (rmarkdown for docx output),
Titouan Robert [ctb],
Michael Barrowman [ctb] (inline footnotes),
Atsushi Yasumoto [ctb] (support for bookdown cross reference)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.5.11 dated 2020-09-09 and 0.6.0 dated 2020-12-01
flextable-0.5.11/flextable/R/00_generic.R |only flextable-0.5.11/flextable/R/deprecated.R |only flextable-0.5.11/flextable/R/display.R |only flextable-0.5.11/flextable/inst/examples/rmd/captions |only flextable-0.5.11/flextable/inst/examples/rmd/loop_docx.Rmd |only flextable-0.5.11/flextable/inst/examples/rmd/loop_html.Rmd |only flextable-0.5.11/flextable/man/figures/fig_colformat_char_1.png |only flextable-0.5.11/flextable/man/figures/fig_colformat_int_1.png |only flextable-0.5.11/flextable/man/figures/fig_colformat_lgl_1.png |only flextable-0.5.11/flextable/man/figures/man_flextable_1.png |only flextable-0.5.11/flextable/man/ph_with_flextable.Rd |only flextable-0.6.0/flextable/DESCRIPTION | 23 flextable-0.6.0/flextable/MD5 | 383 ++--- flextable-0.6.0/flextable/NAMESPACE | 28 flextable-0.6.0/flextable/NEWS.md | 31 flextable-0.6.0/flextable/R/01_fpstruct.R | 224 --- flextable-0.6.0/flextable/R/05_content.R | 325 ---- flextable-0.6.0/flextable/R/chunk_images.R |only flextable-0.6.0/flextable/R/compose.R |only flextable-0.6.0/flextable/R/defaults.R |only flextable-0.6.0/flextable/R/defunct.R | 6 flextable-0.6.0/flextable/R/docx_str.R | 58 flextable-0.6.0/flextable/R/flextable.R | 56 flextable-0.6.0/flextable/R/flextable_sizes.R | 58 flextable-0.6.0/flextable/R/footnote.R |only flextable-0.6.0/flextable/R/format_fun.R | 105 + flextable-0.6.0/flextable/R/formatters.R | 267 ++- flextable-0.6.0/flextable/R/html_str.R | 136 +- flextable-0.6.0/flextable/R/latex_chunks.R |only flextable-0.6.0/flextable/R/latex_str.R |only flextable-0.6.0/flextable/R/printers.R | 670 ++++++---- flextable-0.6.0/flextable/R/proc_freq.R | 2 flextable-0.6.0/flextable/R/read_structure.R | 41 flextable-0.6.0/flextable/R/styles.R | 63 flextable-0.6.0/flextable/R/tabpart_format.R | 30 flextable-0.6.0/flextable/R/tabpart_mains.R | 31 flextable-0.6.0/flextable/R/themes.R | 272 ++-- flextable-0.6.0/flextable/R/utils.R | 3 flextable-0.6.0/flextable/README.md | 22 flextable-0.6.0/flextable/inst/doc/display.R | 16 flextable-0.6.0/flextable/inst/doc/display.Rmd | 26 flextable-0.6.0/flextable/inst/doc/display.html | 216 +-- flextable-0.6.0/flextable/inst/doc/format.R | 63 flextable-0.6.0/flextable/inst/doc/format.Rmd | 177 +- flextable-0.6.0/flextable/inst/doc/format.html | 382 +++-- flextable-0.6.0/flextable/inst/doc/layout.R | 19 flextable-0.6.0/flextable/inst/doc/layout.Rmd | 113 - flextable-0.6.0/flextable/inst/doc/layout.html | 295 ++-- flextable-0.6.0/flextable/inst/doc/overview.R | 9 flextable-0.6.0/flextable/inst/doc/overview.Rmd | 61 flextable-0.6.0/flextable/inst/doc/overview.html | 133 + flextable-0.6.0/flextable/inst/doc/selectors.html | 64 flextable-0.6.0/flextable/inst/examples/rmd/captions_example.Rmd |only flextable-0.6.0/flextable/inst/examples/rmd/demo.Rmd | 4 flextable-0.6.0/flextable/inst/examples/rmd/loop_with_flextable.Rmd |only flextable-0.6.0/flextable/man/align.Rd | 1 flextable-0.6.0/flextable/man/as_b.Rd | 4 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