Title: Programming with Big Data -- Interface to 'ZeroMQ'
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.2.2)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code),
Philipp A. [ctb] (Fedora),
Elliott Sales de Andrade [ctb] (sprintf),
Spencer Aiello [ctb] (windows conf),
Paul Andrey [ctb] (Mac OSX conf),
Panagiotis Cheilaris [ctb] (add serialize version)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.3-3.1 dated 2020-10-14 and 0.3-4 dated 2020-12-13
pbdZMQ-0.3-3.1/pbdZMQ/build |only pbdZMQ-0.3-4/pbdZMQ/ChangeLog | 35 + pbdZMQ-0.3-4/pbdZMQ/DESCRIPTION | 23 - pbdZMQ-0.3-4/pbdZMQ/INSTALL | 4 pbdZMQ-0.3-4/pbdZMQ/MD5 | 122 ++--- pbdZMQ-0.3-4/pbdZMQ/NAMESPACE | 4 pbdZMQ-0.3-4/pbdZMQ/R/111_control.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/111_pbd_opt.r | 3 pbdZMQ-0.3-4/pbdZMQ/R/222_export_env.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/222_export_opt.r | 3 pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_context.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_message.r | 10 pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_poll.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_sendrecv.r | 6 pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_sendrecv_multipart.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_socket.r | 3 pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_transfer.r | 142 +++++- pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_transfers.r |only pbdZMQ-0.3-4/pbdZMQ/R/R_zmq_utility.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/get_conf_zmq.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/overwrite_shpkg.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/pbdZMQ-package.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/random_port.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/rzmq_wrapper.r | 12 pbdZMQ-0.3-4/pbdZMQ/R/zmq.r | 2 pbdZMQ-0.3-4/pbdZMQ/R/zzz.r.in | 4 pbdZMQ-0.3-4/pbdZMQ/README.md | 5 pbdZMQ-0.3-4/pbdZMQ/configure | 97 ++++ pbdZMQ-0.3-4/pbdZMQ/configure.ac | 9 pbdZMQ-0.3-4/pbdZMQ/inst/doc/pbdZMQ-guide.Rnw | 2 pbdZMQ-0.3-4/pbdZMQ/inst/doc/pbdZMQ-guide.pdf |binary pbdZMQ-0.3-4/pbdZMQ/man/a0_a_pbdZMQ-package.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/man/a0_b_control.Rd | 6 pbdZMQ-0.3-4/pbdZMQ/man/a0_b_pbd_opt.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/man/a0_c_options.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/man/a0_d_context.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/man/a1_socket.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/man/a2_message.Rd | 14 pbdZMQ-0.3-4/pbdZMQ/man/b0_sendrecv.Rd | 16 pbdZMQ-0.3-4/pbdZMQ/man/b1_sendrecvfile.Rd | 54 ++ pbdZMQ-0.3-4/pbdZMQ/man/b2_sendrecv_multipart.Rd | 4 pbdZMQ-0.3-4/pbdZMQ/man/b2_sendrecvdir.Rd |only pbdZMQ-0.3-4/pbdZMQ/man/b3_poll.Rd | 8 pbdZMQ-0.3-4/pbdZMQ/man/random_port.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/man/xx_czmq_wrapper.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/man/xx_ls_wrapper.Rd | 10 pbdZMQ-0.3-4/pbdZMQ/man/xx_rzmq_wrapper.Rd | 14 pbdZMQ-0.3-4/pbdZMQ/man/xx_utility.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/man/zz_overwrite_shpkg.Rd | 10 pbdZMQ-0.3-4/pbdZMQ/man/zz_zmq_control.Rd | 105 +++- pbdZMQ-0.3-4/pbdZMQ/man/zz_zmq_flags.Rd | 2 pbdZMQ-0.3-4/pbdZMQ/src/R_zmq.h | 6 pbdZMQ-0.3-4/pbdZMQ/src/R_zmq_transfer.c | 214 ++++++---- pbdZMQ-0.3-4/pbdZMQ/src/install.libs.R | 24 - pbdZMQ-0.3-4/pbdZMQ/src/shellexec_wcc.c | 5 pbdZMQ-0.3-4/pbdZMQ/src/zmqsrc/configure | 6 pbdZMQ-0.3-4/pbdZMQ/src/zmqsrc/src/msg.cpp | 8 pbdZMQ-0.3-4/pbdZMQ/src/zzz.c | 4 pbdZMQ-0.3-4/pbdZMQ/tests/send_recv.R | 28 - pbdZMQ-0.3-4/pbdZMQ/tests/send_recv_rzmq.R |only pbdZMQ-0.3-4/pbdZMQ/vignettes/pbdZMQ-guide.Rnw | 2 pbdZMQ-0.3-4/pbdZMQ/vignettes/pbdZMQ-include/01-introduction.tex | 4 pbdZMQ-0.3-4/pbdZMQ/vignettes/pbdZMQ-include/06-solaris.tex | 8 pbdZMQ-0.3-4/pbdZMQ/vignettes/pbdZMQ-include/pbdZMQ.bib | 6 64 files changed, 773 insertions(+), 307 deletions(-)
Title: Redraw Base Graphics Using 'grid' Graphics
Description: Functions to convert a page of plots drawn with the
'graphics' package into identical output drawn with the 'grid' package.
The result looks like the original 'graphics'-based plot, but consists
of 'grid' grobs and viewports that can then be manipulated with
'grid' functions (e.g., edit grobs and revisit viewports).
Author: Paul Murrell [cre, aut],
Zhijian Wen [aut]
Maintainer: Paul Murrell <paul@stat.auckland.ac.nz>
Diff between gridGraphics versions 0.5-0 dated 2020-02-25 and 0.5-1 dated 2020-12-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/plotdiff.R | 6 ++++-- inst/NEWS.Rd | 10 ++++++++++ 4 files changed, 20 insertions(+), 8 deletions(-)
Title: Generalized Eigenvalues and QZ Decomposition
Description: Generalized eigenvalues and eigenvectors
use QZ decomposition (generalized Schur decomposition).
The decomposition needs an N-by-N non-symmetric
matrix A or paired matrices (A,B) with eigenvalues reordering
mechanism. The decomposition functions are mainly based Fortran
subroutines in complex*16 and double precision of LAPACK
library (version 3.4.2. or later).
Author: Wei-Chen Chen [aut, cre],
LAPACK authors [aut, cph]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between QZ versions 0.1-9 dated 2019-11-28 and 0.2-1 dated 2020-12-13
QZ-0.1-9/QZ/vignettes/QZ-include/jss.bst |only QZ-0.1-9/QZ/vignettes/QZ-include/jss.cls |only QZ-0.2-1/QZ/ChangeLog | 7 + QZ-0.2-1/QZ/DESCRIPTION | 8 - QZ-0.2-1/QZ/MD5 | 111 +++++++++---------- QZ-0.2-1/QZ/data/example_A.r | 8 - QZ-0.2-1/QZ/data/example_AB.r | 8 - QZ-0.2-1/QZ/demo/ex1_geigen.r | 8 - QZ-0.2-1/QZ/demo/ex2_qz.r | 8 - QZ-0.2-1/QZ/demo/ex3_ordqz.r | 4 QZ-0.2-1/QZ/inst/CITATION | 8 - QZ-0.2-1/QZ/inst/doc/QZ-guide.Rnw | 6 - QZ-0.2-1/QZ/inst/doc/QZ-guide.pdf |binary QZ-0.2-1/QZ/inst/ex_verify/dexA1_zgees.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexA1_zgeev.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexA2_dgees.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexA2_dgeev.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexA3_ztrsen.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexA4_dtrsen.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexAB1_zgges.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexAB1_zggev.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexAB2_dgges.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexAB2_dggev.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexAB3_ztgsen.r | 2 QZ-0.2-1/QZ/inst/ex_verify/dexAB4_dtgsen.r | 2 QZ-0.2-1/QZ/man/00_QZ-package.Rd | 4 QZ-0.2-1/QZ/man/11_example.Rd | 18 +-- QZ-0.2-1/QZ/man/21_qz_geigen.Rd | 10 - QZ-0.2-1/QZ/man/23_qz.Rd | 10 - QZ-0.2-1/QZ/man/24_ordqz.Rd | 2 QZ-0.2-1/QZ/man/aa_qz_zgges.Rd | 6 - QZ-0.2-1/QZ/man/aa_qz_zggev.Rd | 6 - QZ-0.2-1/QZ/man/ac_qz_ztgsen.Rd | 6 - QZ-0.2-1/QZ/man/bb_qz_dgges.Rd | 6 - QZ-0.2-1/QZ/man/bb_qz_dggev.Rd | 6 - QZ-0.2-1/QZ/man/bc_qz_dtgsen.Rd | 6 - QZ-0.2-1/QZ/man/cc_qz_zgees.Rd | 6 - QZ-0.2-1/QZ/man/cc_qz_zgeev.Rd | 6 - QZ-0.2-1/QZ/man/cc_qz_ztrsen.Rd | 6 - QZ-0.2-1/QZ/man/dd_qz_dgees.Rd | 6 - QZ-0.2-1/QZ/man/dd_qz_dgeev.Rd | 6 - QZ-0.2-1/QZ/man/dd_qz_dtrsen.Rd | 6 - QZ-0.2-1/QZ/man/xx_print.method.Rd | 2 QZ-0.2-1/QZ/src/qz/xerbla.f | 8 - QZ-0.2-1/QZ/src/wdgees.f | 2 QZ-0.2-1/QZ/src/wdgges.f | 2 QZ-0.2-1/QZ/src/wdtgsen.f | 4 QZ-0.2-1/QZ/src/wdtrsen.f | 4 QZ-0.2-1/QZ/src/wzgees.f | 2 QZ-0.2-1/QZ/src/wzgges.f | 2 QZ-0.2-1/QZ/src/wztgsen.f | 4 QZ-0.2-1/QZ/src/wztrsen.f | 4 QZ-0.2-1/QZ/vignettes/QZ-guide.Rnw | 6 - QZ-0.2-1/QZ/vignettes/QZ-include/02-method.tex | 4 QZ-0.2-1/QZ/vignettes/QZ-include/04-data_example.tex | 36 +++--- QZ-0.2-1/QZ/vignettes/QZ-include/QZ.bib | 6 - QZ-0.2-1/QZ/vignettes/QZ-include/my_jss.cls |only QZ-0.2-1/QZ/vignettes/build_pdf.sh | 16 ++ 58 files changed, 217 insertions(+), 201 deletions(-)
Title: Simple Memory Profiling for R
Description: A simple and light-weight API for memory profiling of R expressions. The profiling is built on top of R's built-in memory profiler ('utils::Rprofmem()'), which records every memory allocation done by R (also native code).
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between profmem versions 0.5.0 dated 2018-01-30 and 0.6.0 dated 2020-12-13
profmem-0.5.0/profmem/inst/extdata/broken.Rprofile.out |only profmem-0.6.0/profmem/DESCRIPTION | 8 +- profmem-0.6.0/profmem/MD5 | 31 ++++--- profmem-0.6.0/profmem/NEWS | 63 ++++++++++------ profmem-0.6.0/profmem/R/Rprofmem-class.R | 14 +-- profmem-0.6.0/profmem/R/profmem.R | 32 ++++++-- profmem-0.6.0/profmem/R/readRprofmem.R | 26 ++++-- profmem-0.6.0/profmem/R/utils.R |only profmem-0.6.0/profmem/build/vignette.rds |binary profmem-0.6.0/profmem/inst/WORDLIST |only profmem-0.6.0/profmem/inst/doc/profmem.html | 34 ++++---- profmem-0.6.0/profmem/inst/doc/profmem.md.rsp | 4 - profmem-0.6.0/profmem/inst/extdata/broken.Rprofmem.out |only profmem-0.6.0/profmem/inst/extdata/example.Rprofmem.out |only profmem-0.6.0/profmem/man/profmem.Rd | 43 ++++++---- profmem-0.6.0/profmem/man/readRprofmem.Rd | 24 +++++- profmem-0.6.0/profmem/tests/profmem.R | 8 +- profmem-0.6.0/profmem/tests/readRprofmem.R | 2 profmem-0.6.0/profmem/vignettes/profmem.md.rsp | 4 - 19 files changed, 188 insertions(+), 105 deletions(-)
Title: Basic Pipe and Open Channel Hydraulics
Description: Functions for basic hydraulic calculations related to
water flow in circular pipes both flowing full (under pressure), and
partially full (gravity flow), and trapezoidal open channels. For
pressure flow this includes friction loss calculations by solving
the Darcy-Weisbach equation for head loss, flow or diameter, and
plotting a Moody diagram. The Darcy-Weisbach friction factor is
calculated using the Colebrook (or Colebrook-White equation),
the basis of the Moody diagram, the original citation being
Colebrook (1939) <doi:10.1680/ijoti.1939.13150>. For gravity flow, the
Manning equation is used, again solving for missing parameters. The
derivation of and solutions using the Darcy-Weisbach equation and the
Manning equation are outlined in many fluid mechanics texts such as
Finnemore and Franzini (2002, ISBN:978-0072432022). For the Manning equation
solutions, this package uses modifications of original code from the 'iemisc'
package by Irucka Embry.
Author: Ed Maurer [aut, cre], Irucka Embry [aut, ctb] (iemisc code)
Maintainer: Ed Maurer <emaurer@scu.edu>
Diff between hydraulics versions 0.2.2 dated 2020-08-26 and 0.2.3 dated 2020-12-13
DESCRIPTION | 6 +- MD5 | 20 ++++----- NEWS.md | 7 +++ R/f_colebrook.R | 2 R/manningt.R | 51 +++++++++++++++++++----- inst/doc/hydraulics_vignette.R | 9 ++++ inst/doc/hydraulics_vignette.Rmd | 21 +++++++++- inst/doc/hydraulics_vignette.html | 78 +++++++++++++++++++++++++++++++------- man/colebrook.Rd | 2 man/manningt.Rd | 18 ++++++-- vignettes/hydraulics_vignette.Rmd | 21 +++++++++- 11 files changed, 187 insertions(+), 48 deletions(-)
Title: Regularized Linear Models
Description: Algorithms compute concave convex (CC) estimators including robust (penalized) generalized linear models and robust support vector machines via the COCO - composite optimization by conjugation operator. The package also contains penalized Poisson, negative binomial, zero-inflated Poisson, zero-inflated negative binomial regression models and robust models with non-convex loss functions. See Wang et al. (2014) <doi:10.1002/sim.6314>,
Wang et al. (2015) <doi:10.1002/bimj.201400143>,
Wang et al. (2016) <doi:10.1177/0962280214530608>,
Wang (2019) <arXiv:1912.11119>,
Wang (2020) <arXiv:2010.02848>.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, and Patrick Breheny
Maintainer: Zhu Wang <wangz1@uthscsa.edu>
Diff between mpath versions 0.4-2.16 dated 2020-11-10 and 0.4-2.17 dated 2020-12-13
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- NEWS | 5 +++++ R/cv.ccsvm.R | 3 +++ inst/doc/brcancer.pdf |binary inst/doc/kkt.pdf |binary inst/doc/static_brcancer.pdf |binary inst/doc/static_ccglmExample.pdf |binary inst/doc/static_ccsvmExample.pdf |binary inst/doc/static_german.pdf |binary man/cv.ccsvm.Rd | 2 ++ 11 files changed, 26 insertions(+), 16 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's Seventh Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Paul Meyvisch, Alvaro Florez Poveda, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 1.7 dated 2020-03-22 and 1.8 dated 2020-12-13
DESCRIPTION | 8 MD5 | 14 - NAMESPACE | 2 R/BimixedContCont.R | 3 R/CausalDiagramBinBin.R | 6 R/CausalDiagramContCont.R | 8 R/plot_SPPBinBin.R | 440 +++++++++++++++++++++++----------------------- man/plot.SPPBinBin.Rd | 2 8 files changed, 243 insertions(+), 240 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-22 0.3-3
2017-03-22 0.3-2
2016-01-13 0.2-22
2015-11-09 0.2-21
2015-08-13 0.2-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-13 2.2
2015-04-27 2.1
2015-04-22 2.0
2014-08-28 1.0
2014-06-13 0.2
2014-04-18 0.1
Title: Log Rotation and Conditional Backups
Description: Conditionally rotate or back-up files based on
their size or the date of the last backup; inspired by the 'Linux'
utility 'logrotate'.
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between rotor versions 0.3.4 dated 2020-10-28 and 0.3.5 dated 2020-12-13
DESCRIPTION | 6 +- MD5 | 32 ++++++------ NEWS.md | 14 +++-- R/BackupQueue.R | 28 +++++++---- R/copy_or_compress.R | 1 R/parsers.R | 20 ++++--- R/rotate.R | 5 + R/utils-fs.R | 9 +++ README.md | 81 ++++++++++++++++---------------- man/Cache.Rd | 2 man/rotate.Rd | 10 +++ man/rotate_rds.Rd | 10 +++ tests/testthat/test_BackupQueue.R | 83 +++++++++++++++++++++++++++++---- tests/testthat/test_copy_or_compress.R | 44 +++++++++++++++-- tests/testthat/test_parsers.R | 10 +++ tests/testthat/test_rotate.R | 3 - tests/testthat/test_utils-predicates.R | 2 17 files changed, 258 insertions(+), 102 deletions(-)
Title: Fast Imputations Using 'Rcpp' and 'Armadillo'
Description: Fast imputations under the object-oriented programming paradigm.
Moreover there are offered a few functions built to work with popular R packages such as 'data.table' or 'dplyr'.
The biggest improvement in time performance could be achieve for a calculation where a grouping variable have to be used.
A single evaluation of a quantitative model for the multiple imputations is another major enhancement.
A new major improvement is one of the fastest predictive mean matching in the R world because of presorting and binary search.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between miceFast versions 0.6.2 dated 2020-07-10 and 0.6.9 dated 2020-12-13
miceFast-0.6.2/miceFast/man/figures |only miceFast-0.6.9/miceFast/DESCRIPTION | 12 - miceFast-0.6.9/miceFast/MD5 | 48 ++--- miceFast-0.6.9/miceFast/NAMESPACE | 23 +- miceFast-0.6.9/miceFast/NEWS.md | 15 + miceFast-0.6.9/miceFast/R/RcppExports.R | 4 miceFast-0.6.9/miceFast/R/fill_NA.R | 10 - miceFast-0.6.9/miceFast/R/fill_NA_N.R | 25 +- miceFast-0.6.9/miceFast/R/naive_fill_NA.R | 2 miceFast-0.6.9/miceFast/R/plots.R |only miceFast-0.6.9/miceFast/build/vignette.rds |binary miceFast-0.6.9/miceFast/inst/doc/miceFast-intro.R | 15 - miceFast-0.6.9/miceFast/inst/doc/miceFast-intro.Rmd | 26 +- miceFast-0.6.9/miceFast/inst/doc/miceFast-intro.html | 106 +++++++++--- miceFast-0.6.9/miceFast/inst/extdata/performance_validity.R | 20 +- miceFast-0.6.9/miceFast/man/compare_imp.Rd |only miceFast-0.6.9/miceFast/man/fill_NA.Rd | 10 - miceFast-0.6.9/miceFast/man/fill_NA_N.Rd | 24 +- miceFast-0.6.9/miceFast/man/upset_NA.Rd |only miceFast-0.6.9/miceFast/src/RcppExports.cpp | 16 + miceFast-0.6.9/miceFast/src/miceFast_class.cpp | 2 miceFast-0.6.9/miceFast/src/miceFast_quantmodels.cpp | 13 + miceFast-0.6.9/miceFast/vignettes/miceFast-intro.Rmd | 26 +- 23 files changed, 241 insertions(+), 156 deletions(-)
Title: Retrieving Information of Proteins from Uniprot
Description: Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.
Author: Mohamed Soudy [aut, cre],
Ali Mostafa [aut]
Maintainer: Mohamed Soudy <MohmedSoudy2009@gmail.com>
Diff between UniprotR versions 1.4.0 dated 2020-07-26 and 2.0.0 dated 2020-12-13
UniprotR-1.4.0/UniprotR/R/plotGoannotation.R |only UniprotR-1.4.0/UniprotR/man/plotGoannotation.Rd |only UniprotR-2.0.0/UniprotR/DESCRIPTION | 13 +++--- UniprotR-2.0.0/UniprotR/MD5 | 43 +++++++++++++------- UniprotR-2.0.0/UniprotR/NAMESPACE | 24 ++++++++++- UniprotR-2.0.0/UniprotR/R/GETSeqFastaUniprot.R |only UniprotR-2.0.0/UniprotR/R/GetPTM_Processing.R | 2 UniprotR-2.0.0/UniprotR/R/GetPathology_Biotech.R | 2 UniprotR-2.0.0/UniprotR/R/GetProteinGOInfo.R | 2 UniprotR-2.0.0/UniprotR/R/GetPublication.R | 2 UniprotR-2.0.0/UniprotR/R/GetSeqLength.R | 2 UniprotR-2.0.0/UniprotR/R/GetSequences.R | 2 UniprotR-2.0.0/UniprotR/R/Getdiseases.R |only UniprotR-2.0.0/UniprotR/R/PathwayAnalysis.R |only UniprotR-2.0.0/UniprotR/R/PlotAcidity.R |only UniprotR-2.0.0/UniprotR/R/PlotCharge.R |only UniprotR-2.0.0/UniprotR/R/PlotGenesNetwork.R |only UniprotR-2.0.0/UniprotR/R/PlotGoInfo.R | 6 +- UniprotR-2.0.0/UniprotR/R/PlotGoterms.R |only UniprotR-2.0.0/UniprotR/R/PlotGravy.R |only UniprotR-2.0.0/UniprotR/inst/CITATION | 2 UniprotR-2.0.0/UniprotR/man/Enrichment.React.Rd |only UniprotR-2.0.0/UniprotR/man/Enrichment.gprofiler.Rd |only UniprotR-2.0.0/UniprotR/man/GETSeqFastaUniprot.Rd |only UniprotR-2.0.0/UniprotR/man/Get.diseases.Rd |only UniprotR-2.0.0/UniprotR/man/Plot.GOMolecular.Rd |only UniprotR-2.0.0/UniprotR/man/Plot.GOSubCellular.Rd |only UniprotR-2.0.0/UniprotR/man/PlotAcidity.Rd |only UniprotR-2.0.0/UniprotR/man/PlotCharge.Rd |only UniprotR-2.0.0/UniprotR/man/PlotGOBiological.Rd |only UniprotR-2.0.0/UniprotR/man/PlotGenesNetwork.Rd |only UniprotR-2.0.0/UniprotR/man/PlotGoInfo.Rd | 2 UniprotR-2.0.0/UniprotR/man/PlotGravy.Rd |only 33 files changed, 70 insertions(+), 32 deletions(-)
Title: Conducts Mokken Scale Analysis
Description: Contains functions for performing Mokken
scale analysis on test and questionnaire data.
It includes an automated item selection algorithm, and various checks of model assumptions.
Author: L. Andries van der Ark [aut, cre],
Letty Koopman [aut],
J. Hendrik Straat [ctb],
Don van den Bergh [ctb]
Maintainer: L. Andries van der Ark <L.A.vanderArk@uva.nl>
Diff between mokken versions 3.0.3 dated 2020-09-15 and 3.0.4 dated 2020-12-13
DESCRIPTION | 8 MD5 | 44 ++-- R/MLcoefH.R | 363 ++++++++++++++++++++++------------ R/MLcoefZ.R | 33 ++- R/aisp.R | 16 - R/coefH.R | 67 ++++-- R/coefZ.R | 60 +++-- R/internalFunctions.R | 27 +- R/search.normal.R | 31 +- data/SWMDK.rda |only data/balance.rda |only data/transreas2.rda |only inst/doc/GettingStartedWithMokken.pdf |binary man/DS14.Rd | 9 man/ICC.Rd | 6 man/MLcoefH.Rd | 35 +-- man/MLcoefZ.Rd | 20 + man/SWMD.Rd | 7 man/SWMDK.Rd |only man/aisp.Rd | 17 - man/autonomySupport.Rd | 2 man/balance.Rd |only man/coefH.Rd | 26 +- man/coefZ.Rd | 28 +- man/mokken-package.Rd | 29 ++ man/transreas2.Rd |only 26 files changed, 525 insertions(+), 303 deletions(-)
Title: Wavelet Scalogram Tools for Time Series Analysis
Description: Provides scalogram based wavelet tools for time series analysis: wavelet power spectrum, scalogram, windowed scalogram, windowed scalogram difference (see Bolos et al. (2017) <doi:10.1016/j.amc.2017.05.046>), scale index and windowed scale index (Benitez et al. (2010) <doi:10.1016/j.camwa.2010.05.010>).
Author: Vicente J. Bolos and Rafael Benitez
Maintainer: Vicente J. Bolos <vicente.bolos@uv.es>
Diff between wavScalogram versions 1.0.0 dated 2019-05-24 and 1.1.0 dated 2020-12-13
DESCRIPTION | 8 MD5 | 42 +-- NAMESPACE | 2 R/cwt_wst.R | 43 ++- R/pow2scales.R | 6 R/scale_index.R | 194 ++++++++++++----- R/scalogram.R | 34 ++- R/wavPlot.R | 6 R/windowed_scale_index.R | 495 ++++++++++++++++++++++++++++---------------- R/windowed_scalogram.R | 45 ++-- R/wsd.R | 15 - man/core.Rd | 36 +-- man/cwt_wst.Rd | 230 ++++++++++---------- man/fourier_factor.Rd | 68 +++--- man/pow2scales.Rd | 62 ++--- man/scale_index.Rd | 252 ++++++++++++---------- man/scalogram.Rd | 239 ++++++++++----------- man/wavPlot.Rd | 141 ++++++------ man/wavelet_radius.Rd | 90 ++++---- man/windowed_scale_index.Rd | 334 ++++++++++++++++------------- man/windowed_scalogram.Rd | 294 +++++++++++++------------- man/wsd.Rd | 379 ++++++++++++++++----------------- 22 files changed, 1698 insertions(+), 1317 deletions(-)
Title: Open Population Capture-Recapture
Description: Functions for non-spatial and spatial open-population capture-recapture analysis.
Author: Murray Efford [aut, cre] (<https://orcid.org/0000-0001-5231-5184>)
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between openCR versions 1.4.4 dated 2020-09-01 and 1.5.0 dated 2020-12-13
openCR-1.4.4/openCR/inst/doc/openCR-vignette.html |only openCR-1.5.0/openCR/DESCRIPTION | 10 openCR-1.5.0/openCR/MD5 | 98 +-- openCR-1.5.0/openCR/NAMESPACE | 2 openCR-1.5.0/openCR/NEWS | 29 + openCR-1.5.0/openCR/R/LLsurface.openCR.R | 21 openCR-1.5.0/openCR/R/PCH1.R | 21 openCR-1.5.0/openCR/R/RcppExports.R | 8 openCR-1.5.0/openCR/R/cloned.fit.R | 2 openCR-1.5.0/openCR/R/derived.r | 88 ++- openCR-1.5.0/openCR/R/getD.R | 14 openCR-1.5.0/openCR/R/kernel.R | 19 openCR-1.5.0/openCR/R/loglik.R | 61 +- openCR-1.5.0/openCR/R/logliksecr.R | 58 +- openCR-1.5.0/openCR/R/moving.fit.R | 2 openCR-1.5.0/openCR/R/onLoad.R |only openCR-1.5.0/openCR/R/openCR.design.R | 55 +- openCR-1.5.0/openCR/R/openCR.esa.r | 106 ++-- openCR-1.5.0/openCR/R/openCR.fit.R | 321 +++++++----- openCR-1.5.0/openCR/R/openCR.make.newdata.R | 55 +- openCR-1.5.0/openCR/R/openCR.pdot.r | 11 openCR-1.5.0/openCR/R/par.openCR.fit.R | 50 - openCR-1.5.0/openCR/R/plotKernel.R | 4 openCR-1.5.0/openCR/R/posterior2.R | 50 - openCR-1.5.0/openCR/R/prwi.R | 24 openCR-1.5.0/openCR/R/prwisecr.R | 112 +--- openCR-1.5.0/openCR/R/summary.openCR.R | 2 openCR-1.5.0/openCR/R/utility.R | 124 +++- openCR-1.5.0/openCR/build/vignette.rds |binary openCR-1.5.0/openCR/inst/doc/openCR-vignette.R | 5 openCR-1.5.0/openCR/inst/doc/openCR-vignette.Rmd | 138 +++-- openCR-1.5.0/openCR/inst/doc/openCR-vignette.pdf |only openCR-1.5.0/openCR/man/LLsurface.Rd | 8 openCR-1.5.0/openCR/man/derived.Rd | 10 openCR-1.5.0/openCR/man/fieldvoleCH.Rd | 4 openCR-1.5.0/openCR/man/microtus.Rd | 2 openCR-1.5.0/openCR/man/openCR-internal.Rd | 14 openCR-1.5.0/openCR/man/openCR-package.Rd | 4 openCR-1.5.0/openCR/man/openCR.design.Rd | 13 openCR-1.5.0/openCR/man/openCR.fit.Rd | 106 ++-- openCR-1.5.0/openCR/man/par.openCR.fit.Rd | 40 + openCR-1.5.0/openCR/man/simulate.Rd | 9 openCR-1.5.0/openCR/man/ucare.Rd | 2 openCR-1.5.0/openCR/src/PCH1.cpp | 222 ++++---- openCR-1.5.0/openCR/src/RcppExports.cpp | 21 openCR-1.5.0/openCR/src/prwiparallel.cpp | 6 openCR-1.5.0/openCR/src/prwisecrparallel.cpp | 572 +++++++++++----------- openCR-1.5.0/openCR/src/utils.cpp | 32 + openCR-1.5.0/openCR/src/utils.h | 5 openCR-1.5.0/openCR/tests |only openCR-1.5.0/openCR/vignettes/openCR-vignette.Rmd | 138 +++-- 51 files changed, 1542 insertions(+), 1156 deletions(-)
Title: Working with Files from 'LexisNexis'
Description: My PhD supervisor once told me that everyone doing newspaper
analysis starts by writing code to read in files from the 'LexisNexis' newspaper
archive (retrieved e.g., from <http://www.nexis.com/> or any of the partner
sites). However, while this is a nice exercise I do recommend, not everyone has
the time. This package takes files downloaded from the newspaper archive of
'LexisNexis', reads them into R and offers functions for further processing.
Author: Johannes Gruber [aut, cre]
Maintainer: Johannes Gruber <j.gruber.1@research.gla.ac.uk>
Diff between LexisNexisTools versions 0.3.2 dated 2020-10-17 and 0.3.3 dated 2020-12-13
DESCRIPTION | 14 - MD5 | 24 +- NAMESPACE | 2 NEWS.md | 4 R/LexisNexisTools.R | 15 - README.md | 2 inst/CITATION | 2 inst/WORDLIST | 22 +- inst/doc/demo.Rmd | 2 inst/doc/demo.html | 431 +++++++++++++++++++++++--------------------------- man/lnt_convert.Rd | 2 man/lnt_similarity.Rd | 2 vignettes/demo.Rmd | 2 13 files changed, 255 insertions(+), 269 deletions(-)
More information about LexisNexisTools at CRAN
Permanent link
Title: A Simpler Way to Find Your Files
Description: Constructs paths to your project's files.
Declare the relative path of a file within your project with 'i_am()'.
Use the 'here()' function as a drop-in replacement for 'file.path()',
it will always locate the files relative to your project root.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Jennifer Bryan [ctb] (<https://orcid.org/0000-0002-6983-2759>)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between here versions 1.0.0 dated 2020-11-15 and 1.0.1 dated 2020-12-13
DESCRIPTION | 12 ++--- MD5 | 11 ++-- NEWS.md | 5 ++ inst/doc/here.html | 98 +++++++++++++---------------------------- inst/doc/rmarkdown.html | 52 ++------------------- tests/testthat/helper-expect.R |only tests/testthat/test-i_am.R | 2 7 files changed, 58 insertions(+), 122 deletions(-)
Title: Functions for Analysis of fMRI Datasets Stored in the ANALYZE or
NIFTI Format
Description: Functions for I/O, visualisation and analysis of functional Magnetic Resonance Imaging (fMRI) datasets stored in the ANALYZE or NIFTI format. Note that the latest version of XQuartz seems to be necessary under MacOS.
Author: Pierre Lafaye De Micheaux [aut, cre],
Jonathan L Marchini [aut],
Cleve Moler [cph] (LAPACK/BLAS routines in src),
Jack Dongarra [cph] (LAPACK/BLAS routines in src),
Richard Hanson [cph] (LAPACK/BLAS routines in src),
Sven Hammarling [cph] (LAPACK/BLAS routines in src),
Jeremy Du Croz [cph] (LAPACK/BLAS routines in src)
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between AnalyzeFMRI versions 1.1-21 dated 2019-11-10 and 1.1-22 dated 2020-12-13
AnalyzeFMRI-1.1-21/AnalyzeFMRI/src/lsame.f |only AnalyzeFMRI-1.1-21/AnalyzeFMRI/src/slamc.f |only AnalyzeFMRI-1.1-22/AnalyzeFMRI/DESCRIPTION | 13 AnalyzeFMRI-1.1-22/AnalyzeFMRI/MD5 | 14 - AnalyzeFMRI-1.1-22/AnalyzeFMRI/configure | 310 ++++++++++++++++++++++- AnalyzeFMRI-1.1-22/AnalyzeFMRI/configure.ac | 11 AnalyzeFMRI-1.1-22/AnalyzeFMRI/inst/CITATION | 4 AnalyzeFMRI-1.1-22/AnalyzeFMRI/inst/HISTORY | 12 AnalyzeFMRI-1.1-22/AnalyzeFMRI/src/analyzeFMRI.c | 64 ++-- 9 files changed, 368 insertions(+), 60 deletions(-)
Title: Tensor Noise Reduction and Completion Based on Ordinal
Observations
Description: Efficient algorithm for tensor noise reduction and completion of ordinal tensor data based on the cumulative link model. The algorithm employs the alternating optimization approach. The detailed algorithm description can be found in Lee and Wang, Proceedings of International Conference on Machine Learning, 119:5778-5788, 2020.
Author: Chanwoo Lee <chanwoo.lee@wisc.edu>, Miaoyan Wang <miaoyan.wang@wisc.edu>
Maintainer: Chanwoo Lee <chanwoo.lee@wisc.edu>
Diff between tensorordinal versions 0.1.0 dated 2020-03-20 and 0.2.0 dated 2020-12-13
DESCRIPTION | 11 ++++++----- MD5 | 10 ++++++---- NAMESPACE | 1 + NEWS.md |only R/basicfunction.R | 22 ++++++++++++++++++---- README.md | 5 ++++- man/theta_to_p.Rd |only 7 files changed, 35 insertions(+), 14 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.21.0 dated 2020-10-27 and 1.22.0 dated 2020-12-13
DESCRIPTION | 8 +++---- MD5 | 33 ++++++++++++++++++------------ NAMESPACE | 2 + NEWS | 29 ++++++++++++++++++++++++++ R/availableCores.R | 47 ++++++++++++++++++++++++++++++++++++++++++- R/cpuLoad.R |only R/freeCores.R |only R/getOptionOrEnvVar.R | 7 +++--- R/makeClusterPSOCK.R | 6 ++--- README.md | 13 ++++++++--- inst/WORDLIST | 6 +++++ man/availableCores.Rd | 24 ++++++++++++++++++++- man/cpuLoad.Rd |only man/freeCores.Rd |only man/makeClusterPSOCK.Rd | 6 ++--- tests/as.cluster.R | 2 - tests/cpuLoad.R |only tests/freeCores.R |only tests/incl/start,load-only.R | 1 tests/makeClusterPSOCK.R | 20 ++++++++++++++++-- tests/options-and-envvars.R |only 21 files changed, 168 insertions(+), 36 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-31 1.4.0
2016-01-15 1.3.2
2012-10-30 1.2
2012-09-19 1.1
2012-07-13 1.0