Title: Rounding to Decimal Digits
Description: Decimal rounding is non-trivial in binary arithmetic. ISO
standard round to even is more rare than typically assumed as most decimal fractions
are not exactly representable in binary. Our roundX() versions explore differences
between current and potential future versions of round() in R.
Further, provides (some partly related) C99 math lib functions not in base R.
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
R-core [ctb] ("r1.C" only)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between round versions 0.12-2 dated 2020-07-06 and 0.20-0 dated 2021-01-04
DESCRIPTION | 14 +- LICENSE |only MD5 | 32 +++--- R/round.R | 12 ++ build/round.pdf |binary build/vignette.rds |binary inst/NEWS.Rd | 21 +++- inst/doc/Rounding.Rmd | 5 + inst/doc/Rounding.html | 211 ++++++++++++++++++++++++-------------------- inst/doc/rationalRound.Rmd |only inst/doc/rationalRound.html |only man/randI.Rd | 5 - man/roundX.Rd | 8 + src/fround.c | 23 ++-- src/round.h | 45 ++++++++- tests/round-extreme.R | 1 tests/round-tst.R | 125 ++++++++++++++++++++------ vignettes/Rounding.Rmd | 5 + vignettes/rationalRound.Rmd |only 19 files changed, 342 insertions(+), 165 deletions(-)
Title: Simple Tools for Examining and Cleaning Dirty Data
Description: The main janitor functions can: perfectly format data.frame column
names; provide quick counts of variable combinations (i.e., frequency
tables and crosstabs); and isolate duplicate records. Other janitor functions
nicely format the tabulation results. These tabulate-and-report functions
approximate popular features of SPSS and Microsoft Excel. This package
follows the principles of the "tidyverse" and works well with the pipe function
%>%. janitor was built with beginning-to-intermediate R users in mind and is
optimized for user-friendliness. Advanced R users can already do everything
covered here, but with janitor they can do it faster and save their thinking for
the fun stuff.
Author: Sam Firke [aut, cre],
Bill Denney [ctb],
Chris Haid [ctb],
Ryan Knight [ctb],
Malte Grosser [ctb],
Jonathan Zadra [ctb]
Maintainer: Sam Firke <samuel.firke@gmail.com>
Diff between janitor versions 2.0.1 dated 2020-04-12 and 2.1.0 dated 2021-01-04
janitor-2.0.1/janitor/R/tests.R |only janitor-2.0.1/janitor/tests/testthat/test-add-totals.R |only janitor-2.0.1/janitor/tests/testthat/test-tests.R |only janitor-2.1.0/janitor/DESCRIPTION | 10 janitor-2.1.0/janitor/MD5 | 91 +++--- janitor-2.1.0/janitor/NEWS.md | 38 ++ janitor-2.1.0/janitor/R/adorn_ns.R | 32 +- janitor-2.1.0/janitor/R/adorn_pct_formatting.R | 17 + janitor-2.1.0/janitor/R/adorn_percentages.R | 14 janitor-2.1.0/janitor/R/adorn_rounding.R | 19 - janitor-2.1.0/janitor/R/adorn_title.R | 3 janitor-2.1.0/janitor/R/adorn_totals.R | 87 ++++- janitor-2.1.0/janitor/R/clean_names.R | 39 +- janitor-2.1.0/janitor/R/excel_dates.R | 2 janitor-2.1.0/janitor/R/make_clean_names.R | 34 +- janitor-2.1.0/janitor/R/round_half_up.R | 6 janitor-2.1.0/janitor/R/statistical_tests.R |only janitor-2.1.0/janitor/R/tabyl.R | 57 +-- janitor-2.1.0/janitor/README.md | 146 ++++------ janitor-2.1.0/janitor/build/vignette.rds |binary janitor-2.1.0/janitor/inst/doc/janitor.R | 4 janitor-2.1.0/janitor/inst/doc/janitor.Rmd | 4 janitor-2.1.0/janitor/inst/doc/janitor.html | 73 ++--- janitor-2.1.0/janitor/inst/doc/tabyls.R | 35 ++ janitor-2.1.0/janitor/inst/doc/tabyls.Rmd | 50 ++- janitor-2.1.0/janitor/inst/doc/tabyls.html | 119 +++++--- janitor-2.1.0/janitor/man/adorn_ns.Rd | 17 + janitor-2.1.0/janitor/man/adorn_pct_formatting.Rd | 16 + janitor-2.1.0/janitor/man/adorn_percentages.Rd | 14 janitor-2.1.0/janitor/man/adorn_rounding.Rd | 18 - janitor-2.1.0/janitor/man/adorn_title.Rd | 3 janitor-2.1.0/janitor/man/adorn_totals.Rd | 4 janitor-2.1.0/janitor/man/chisq.test.Rd | 2 janitor-2.1.0/janitor/man/clean_names.Rd | 39 +- janitor-2.1.0/janitor/man/excel_numeric_to_date.Rd | 2 janitor-2.1.0/janitor/man/figures/dirty_data.PNG |binary janitor-2.1.0/janitor/man/fisher.test.Rd | 2 janitor-2.1.0/janitor/man/make_clean_names.Rd | 15 - janitor-2.1.0/janitor/man/round_half_up.Rd | 2 janitor-2.1.0/janitor/man/signif_half_up.Rd | 2 janitor-2.1.0/janitor/tests/testthat/test-adorn-ns.R | 8 janitor-2.1.0/janitor/tests/testthat/test-adorn-percentages.R | 18 - janitor-2.1.0/janitor/tests/testthat/test-adorn-totals.R |only janitor-2.1.0/janitor/tests/testthat/test-adorn_totals.R |only janitor-2.1.0/janitor/tests/testthat/test-clean-names.R | 34 ++ janitor-2.1.0/janitor/tests/testthat/test-statistical-tests.R |only janitor-2.1.0/janitor/tests/testthat/test-tabyl.R | 53 +++ janitor-2.1.0/janitor/tests/testthat/test-utilities.R | 3 janitor-2.1.0/janitor/vignettes/janitor.Rmd | 4 janitor-2.1.0/janitor/vignettes/tabyls.Rmd | 50 ++- 50 files changed, 808 insertions(+), 378 deletions(-)
Title: A Tool for the Correlates of State Policy Project Data
Description: A tool that imports, subsets, visualizes, and exports the Correlates of State Policy Project dataset assembled by Marty P. Jordan and Matt Grossmann (2020) <http://ippsr.msu.edu/public-policy/correlates-state-policy>. The Correlates data contains over 2000 variables across more than 100 years that pertain to state politics and policy in the United States. Users with only a basic understanding of R can subset this data across multiple dimensions, export their search results, create map visualizations, export the citations associated with their searches, and more.
Author: Caleb Lucas (https://caleblucas.com/) and Joshua McCrain (http://joshuamccrain.com/)
Maintainer: Josh McCrain <josh.mccrain@gmail.com>
Diff between cspp versions 0.3.0 dated 2020-10-27 and 0.3.1 dated 2021-01-04
cspp-0.3.0/cspp/R/codebook.R |only cspp-0.3.0/cspp/R/correlates.R |only cspp-0.3.0/cspp/data/codebook.rda |only cspp-0.3.0/cspp/data/correlates.rda |only cspp-0.3.0/cspp/man/codebook.Rd |only cspp-0.3.0/cspp/man/correlates.Rd |only cspp-0.3.1/cspp/DESCRIPTION | 10 cspp-0.3.1/cspp/MD5 | 64 - cspp-0.3.1/cspp/NAMESPACE | 2 cspp-0.3.1/cspp/NEWS.md |only cspp-0.3.1/cspp/R/generate_map.R | 20 cspp-0.3.1/cspp/R/get_cites.R | 2 cspp-0.3.1/cspp/R/get_cspp_data.R | 100 ++ cspp-0.3.1/cspp/R/get_var_info.R | 2 cspp-0.3.1/cspp/R/map_example.R | 8 cspp-0.3.1/cspp/R/network_data.R | 6 cspp-0.3.1/cspp/R/network_vars.R | 8 cspp-0.3.1/cspp/R/plot_panel.R |only cspp-0.3.1/cspp/R/var_names_db.R | 8 cspp-0.3.1/cspp/R/zzz.R | 2 cspp-0.3.1/cspp/README.md | 465 ++++++---- cspp-0.3.1/cspp/build/vignette.rds |binary cspp-0.3.1/cspp/inst/doc/cspp-vignette.R | 74 + cspp-0.3.1/cspp/inst/doc/cspp-vignette.Rmd | 107 +- cspp-0.3.1/cspp/inst/doc/cspp-vignette.html | 638 +++++++------- cspp-0.3.1/cspp/man/figures/README-unnamed-chunk-16-1.png |binary cspp-0.3.1/cspp/man/figures/README-unnamed-chunk-17-1.png |only cspp-0.3.1/cspp/man/figures/README-unnamed-chunk-18-1.png |only cspp-0.3.1/cspp/man/figures/README-unnamed-chunk-19-1.png |only cspp-0.3.1/cspp/man/figures/README-unnamed-chunk-20-1.png |only cspp-0.3.1/cspp/man/figures/README-unnamed-chunk-21-1.png |only cspp-0.3.1/cspp/man/figures/README-unnamed-chunk-24-1.png |only cspp-0.3.1/cspp/man/figures/README-unnamed-chunk-25-1.png |only cspp-0.3.1/cspp/man/generate_map.Rd | 18 cspp-0.3.1/cspp/man/get_cspp_data.Rd | 3 cspp-0.3.1/cspp/man/map_example.Rd | 10 cspp-0.3.1/cspp/man/network_data.Rd | 8 cspp-0.3.1/cspp/man/network_vars.Rd | 10 cspp-0.3.1/cspp/man/plot_panel.Rd |only cspp-0.3.1/cspp/man/var_names_db.Rd | 10 cspp-0.3.1/cspp/vignettes/cspp-vignette.Rmd | 107 +- 41 files changed, 1072 insertions(+), 610 deletions(-)
Title: Nonparametric and Cox-Based Estimation of ATE in Competing Risks
Description: Estimation of average treatment effects (ATE) of two static treatment regimes on time-to-event outcomes with K competing events (K can be 1). The method uses propensity scores weighting for emulation of baseline randomization.
Author: Bella Vakulenko-Lagun, Colin Magdamo, Marie-Laure Charpignon, Bang Zheng, Mark Albers, Sudeshna Das
Maintainer: Bella Vakulenko-Lagun <blagun@stat.haifa.ac.il>
Diff between causalCmprsk versions 1.0.0 dated 2020-11-03 and 1.0.1 dated 2021-01-04
DESCRIPTION | 8 +-- MD5 | 28 ++++++------ R/causalCmprsk-functions.R | 16 +++---- R/causalCmprsk.R | 4 - README.md | 4 - inst/doc/cmp_rsk_RHC.R | 34 +-------------- inst/doc/cmp_rsk_RHC.Rmd | 37 ++-------------- inst/doc/cmp_rsk_RHC.html | 102 ++++++++++++++++++++++----------------------- man/causalCmprsk.Rd | 4 - man/fit.cox.Rd | 6 +- man/fit.nonpar.Rd | 4 - man/get.numAtRisk.Rd | 2 man/get.weights.Rd | 4 - vignettes/cmp_rsk_RHC.Rmd | 37 ++-------------- vignettes/references.bib | 5 +- 15 files changed, 106 insertions(+), 189 deletions(-)
Title: UNC Men's Basketball Match Results Since 1949-1950 Season
Description: Dataset contains select attributes for each match result since 1949-1950 season for UNC men's basketball team.
Author: Jay Lee [aut, cre]
Maintainer: Jay Lee <joongsup@gmail.com>
Diff between uncmbb versions 0.2.1 dated 2019-10-28 and 0.2.2 dated 2021-01-04
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/data.R | 16 ++++++++-------- README.md | 35 +++++++++++++++++------------------ data/duke.rda |binary data/unc.rda |binary man/duke.Rd | 14 ++++++++------ man/unc.Rd | 14 ++++++++------ 9 files changed, 59 insertions(+), 51 deletions(-)
Title: Seamless Integration Between R and 'Julia'
Description: Provides an R interface to 'Julia',
which is a high-level, high-performance dynamic programming language
for numerical computing, see <https://julialang.org/> for more information.
It provides a high-level interface as well as a low-level interface.
Using the high level interface, you could call any 'Julia' function just like
any R function with automatic type conversion. Using the low level interface,
you could deal with C-level SEXP directly while enjoying the convenience of
using a high-level programming language like 'Julia'.
Author: Changcheng Li [aut, cre],
Randy Lai [ctb],
Dmitri Grominski [ctb],
Nagi Teramo [ctb]
Maintainer: Changcheng Li <cxl508@psu.edu>
Diff between JuliaCall versions 0.17.1 dated 2019-11-27 and 0.17.2 dated 2021-01-04
DESCRIPTION | 14 +- MD5 | 116 +++++++++++------------ NAMESPACE | 3 NEWS.md | 18 +++ R/JuliaCall.R | 4 R/JuliaObject.R | 2 R/RMarkdown.R | 25 +++- R/RcppExports.R | 4 R/aaa.R | 43 +++++--- R/installJulia.R |only R/interface.R | 12 ++ R/package.R | 5 R/package_wrap.R | 2 R/piper.R | 2 R/zzz.R | 40 ++++++- README.md | 75 +++++++++----- build/vignette.rds |binary inst/doc/JuliaCall_in_Jupyter_R_Notebook.html | 41 ++++++-- inst/doc/Julia_in_RMarkdown.html | 41 ++++++-- inst/julia/display/plotsViewer.jl | 9 + man/JuliaCall.Rd | 6 - man/JuliaObject.Rd | 4 man/JuliaObjectFields.Rd | 2 man/autowrap.Rd | 2 man/call.Rd | 4 man/eng_juliacall.Rd | 36 +++---- man/grapes-greater-than-J-grapes.Rd | 46 ++++----- man/install_julia.Rd |only man/julia_assign.Rd | 4 man/julia_command.Rd | 4 man/julia_console.Rd | 32 +++--- man/julia_eval.Rd | 4 man/julia_exists.Rd | 42 ++++---- man/julia_help.Rd | 42 ++++---- man/julia_markdown_setup.Rd | 2 man/julia_notebook_setup.Rd | 28 ++--- man/julia_package.Rd | 7 - man/julia_pkg_wrap.Rd | 4 man/julia_setup.Rd | 114 ++++++++++++---------- man/julia_source.Rd | 26 ++--- man/plotsViewer.Rd | 20 +-- src/JuliaCall.cpp | 27 ++++- src/RcppExports.cpp | 10 + src/libjulia.cpp | 18 ++- src/libjulia.h | 4 tests/testthat.R | 1 tests/testthat/test_AD.R | 6 - tests/testthat/test_JuliaObject.R | 6 - tests/testthat/test_JuliaTuple.R | 2 tests/testthat/test_RCall.R | 2 tests/testthat/test_arguments.R | 2 tests/testthat/test_array_related_dispatching.R | 8 - tests/testthat/test_asR.R | 2 tests/testthat/test_autowrap_JuliaObject.R | 2 tests/testthat/test_basic.R | 2 tests/testthat/test_dispatch.R | 10 - tests/testthat/test_error.R | 2 tests/testthat/test_ifelse_related_dispatching.R | 8 - tests/testthat/test_julia_package.R | 2 tests/testthat/test_pkgwrap.R | 2 60 files changed, 619 insertions(+), 382 deletions(-)
Title: Infinite Mixtures of Infinite Factor Analysers and Related
Models
Description: Provides flexible Bayesian estimation of Infinite Mixtures of Infinite Factor Analysers and related models, for nonparametrically clustering high-dimensional data, introduced by Murphy et al. (2020) <doi:10.1214/19-BA1179>. The IMIFA model conducts Bayesian nonparametric model-based clustering with factor analytic covariance structures without recourse to model selection criteria to choose the number of clusters or cluster-specific latent factors, mostly via efficient Gibbs updates. Model-specific diagnostic tools are also provided, as well as many options for plotting results, conducting posterior inference on parameters of interest, posterior predictive checking, and quantifying uncertainty.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Cinzia Viroli [ctb] (<https://orcid.org/0000-0002-3278-5266>),
Isobel Claire Gormley [ctb] (<https://orcid.org/0000-0001-7713-681X>)
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between IMIFA versions 2.1.4 dated 2020-11-18 and 2.1.5 dated 2021-01-04
DESCRIPTION | 16 +++++++-------- MD5 | 35 +++++++++++++++++----------------- R/Diagnostics.R | 12 ++++++----- R/FullConditionals.R | 48 +++++++++++++++++++++++++++++++++++------------ R/Gibbs_IMFA.R | 31 +++++++++++++++++++----------- R/Gibbs_IMIFA.R | 30 ++++++++++++++++++----------- R/IMIFA.R | 6 ++--- R/MainFunction.R | 6 +++-- R/PlottingFunctions.R | 8 ++++--- build/partial.rdb |only inst/CITATION | 7 +++--- inst/NEWS.md | 11 +++++++++- inst/doc/IMIFA.R | 11 +++++++--- inst/doc/IMIFA.Rmd | 11 +++++++--- inst/doc/IMIFA.html | 44 ++----------------------------------------- man/IMIFA-package.Rd | 6 ++--- man/get_IMIFA_results.Rd | 6 ++--- man/rDirichlet.Rd | 2 - vignettes/IMIFA.Rmd | 11 +++++++--- 19 files changed, 168 insertions(+), 133 deletions(-)
Title: Creating Meta-Information for Parameters
Description: Provides tools for describing parameters of algorithms in an abstract way.
Description can include an id, a description, a domain (range or list of values),
and a default value. 'dynparam' can also convert parameter sets to a 'ParamHelpers' format,
in order to be able to use 'dynparam' in conjunction with 'mlrMBO'.
Author: Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between dynparam versions 1.0.1 dated 2020-06-24 and 1.0.2 dated 2021-01-04
DESCRIPTION | 8 +-- MD5 | 32 ++++++------- NEWS.md | 4 + README.md | 9 ++- tests/testthat/test-distribution_expuniform.R | 20 ++++---- tests/testthat/test-distribution_normal.R | 40 ++++++++--------- tests/testthat/test-distribution_super.R | 10 ++-- tests/testthat/test-distribution_uniform.R | 20 ++++---- tests/testthat/test-helper_collapse_set.R | 16 +++--- tests/testthat/test-param_character.R | 56 ++++++++++++------------ tests/testthat/test-param_integer.R | 60 +++++++++++++------------- tests/testthat/test-param_integer_range.R | 36 +++++++-------- tests/testthat/test-param_logical.R | 44 +++++++++---------- tests/testthat/test-param_numeric.R | 60 +++++++++++++------------- tests/testthat/test-param_numeric_range.R | 36 +++++++-------- tests/testthat/test-param_subset.R | 30 ++++++------- tests/testthat/test-set.R | 44 +++++++++---------- 17 files changed, 265 insertions(+), 260 deletions(-)
Title: Inferring Causal Effects using Bayesian Structural Time-Series
Models
Description: Implements a Bayesian approach to causal impact estimation in time
series, as described in Brodersen et al. (2015) <DOI:10.1214/14-AOAS788>.
See the package documentation on GitHub
<https://google.github.io/CausalImpact/> to get started.
Author: Kay H. Brodersen <kbrodersen@google.com>,
Alain Hauser <alhauser@google.com>
Maintainer: Alain Hauser <alhauser@google.com>
Diff between CausalImpact versions 1.2.4 dated 2020-01-08 and 1.2.5 dated 2021-01-04
DESCRIPTION | 12 ++++++------ MD5 | 30 +++++++++++++++--------------- R/impact_analysis.R | 2 +- R/impact_model.R | 2 +- README.md | 6 +++--- build/vignette.rds |binary inst/CITATION | 4 ++-- inst/doc/CausalImpact.Rmd | 8 ++++---- inst/doc/CausalImpact.html | 20 ++++++++++---------- man/CausalImpact.Rd | 2 +- tests/testthat/test-impact-analysis.R | 33 +++++++++++++++++++-------------- tests/testthat/test-impact-inference.R | 6 +++--- tests/testthat/test-impact-misc.R | 14 +++++++++----- tests/testthat/test-impact-model.R | 27 ++++++++++++++++++++------- tests/testthat/test-impact-plot.R | 10 +++++----- vignettes/CausalImpact.Rmd | 8 ++++---- 16 files changed, 103 insertions(+), 81 deletions(-)
Title: An API Wrapper for WordPress Site APIs
Description: An API wrapper that helps R developers retrieve data from a WordPress site's API in tidy format, in addition to
publishing content on the WordPress site (WordPress API documentation: <https://developer.wordpress.org/rest-api/>).
Author: Simit Patel [aut, cre],
SixJupiter [cph, fnd]
Maintainer: Simit Patel <simit@sixjupiter.com>
Diff between wordpressr versions 0.1.1 dated 2020-09-29 and 0.2.0 dated 2021-01-04
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++++------ NAMESPACE | 2 ++ NEWS.md | 12 ++++++++++++ R/delete-wp-pages.R |only R/get-wp-posts-after.R |only R/get-wp-posts.R | 8 ++++---- R/globals.R | 2 +- inst/doc/wordpressr.html | 28 +++++++++++++++------------- man/delete_wp_page.Rd |only man/get_wp_posts_after.Rd |only 11 files changed, 47 insertions(+), 27 deletions(-)
Title: Interpreting Regression Effects
Description: The purpose of this package is to provide methods to interpret multiple
linear regression and canonical correlation results including beta weights,structure coefficients,
validity coefficients, product measures, relative weights, all-possible-subsets regression,
dominance analysis, commonality analysis, and adjusted effect sizes.
Author: Kim Nimon <kim.nimon@gmail.com>, Fred Oswald, and J. Kyle Roberts.
Maintainer: Kim Nimon <kim.nimon@gmail.com>
Diff between yhat versions 2.0-2 dated 2020-05-27 and 2.0-3 dated 2021-01-04
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- R/effect.size.R | 12 ++++++------ man/aps.Rd | 3 ++- man/boot.yhat.Rd | 3 ++- man/booteval.yhat.rd | 3 ++- man/calc.yhat.rd | 5 +++-- man/canonCommonality.Rd | 3 ++- man/commonality.rd | 3 ++- man/commonalityCoefficients.Rd | 3 ++- man/dombin.rd | 3 ++- man/dominance.rd | 3 ++- man/effect.size.Rd | 3 ++- man/plotCI.yhat.rd | 3 ++- man/regr.Rd | 3 ++- man/rlw.rd | 3 ++- 16 files changed, 52 insertions(+), 39 deletions(-)
Title: A Framework for Building HTTP API
Description: Allows to easily create high-performance full featured HTTP APIs from R
functions. Provides high-level classes such as 'Request', 'Response',
'Application', 'Middleware' in order to streamline server side
application development. Out of the box allows to serve requests using
'Rserve' package, but flexible enough to integrate with other HTTP servers
such as 'httpuv'.
Author: Dmitriy Selivanov [aut, cre] (<https://orcid.org/0000-0001-5413-1506>),
Artem Klevtsov [aut] (<https://orcid.org/0000-0003-0492-6647>),
rexy.ai [cph, fnd]
Maintainer: Dmitriy Selivanov <ds@rexy.ai>
Diff between RestRserve versions 0.4.0 dated 2020-11-11 and 0.4.1 dated 2021-01-04
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 12 ++++++++---- README.md | 11 ++++++----- inst/doc/ContentHandlers.html | 6 +++--- inst/doc/Logging.html | 6 +++--- inst/doc/Middleware.html | 16 ++++++++-------- inst/tinytest/test-cl-application.R | 19 ++++++++++++------- inst/tinytest/test-cl-middleware.R | 4 ++-- 9 files changed, 53 insertions(+), 43 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.22.0 dated 2020-12-13 and 1.23.0 dated 2021-01-04
parallelly-1.22.0/parallelly/man/figures/lifecycle-experimental-orange.svg |only parallelly-1.23.0/parallelly/DESCRIPTION | 6 - parallelly-1.23.0/parallelly/MD5 | 38 +++++----- parallelly-1.23.0/parallelly/NAMESPACE | 2 parallelly-1.23.0/parallelly/NEWS | 26 ++++++ parallelly-1.23.0/parallelly/R/availableConnections.R |only parallelly-1.23.0/parallelly/R/availableCores.R | 11 ++ parallelly-1.23.0/parallelly/R/availableWorkers.R | 12 +-- parallelly-1.23.0/parallelly/R/detectCores.R | 20 +++-- parallelly-1.23.0/parallelly/R/freeCores.R | 6 + parallelly-1.23.0/parallelly/R/makeClusterPSOCK.R | 10 ++ parallelly-1.23.0/parallelly/R/options.R | 2 parallelly-1.23.0/parallelly/R/zzz.R | 17 ++++ parallelly-1.23.0/parallelly/README.md | 8 +- parallelly-1.23.0/parallelly/inst/WORDLIST | 2 parallelly-1.23.0/parallelly/man/availableConnections.Rd |only parallelly-1.23.0/parallelly/man/availableCores.Rd | 8 +- parallelly-1.23.0/parallelly/man/availableWorkers.Rd | 9 +- parallelly-1.23.0/parallelly/man/figures/lifecycle-maturing-blue.svg |only parallelly-1.23.0/parallelly/man/freeCores.Rd | 3 parallelly-1.23.0/parallelly/man/parallelly.options.Rd | 2 parallelly-1.23.0/parallelly/tests/availableCores.R | 8 +- 22 files changed, 142 insertions(+), 48 deletions(-)
Title: Visualizations of Distributions and Uncertainty
Description: Provides primitives for visualizing distributions using 'ggplot2' that are particularly tuned for
visualizing uncertainty in either a frequentist or Bayesian mode. Both analytical distributions (such as
frequentist confidence distributions or Bayesian priors) and distributions represented as samples (such as
bootstrap distributions or Bayesian posterior samples) are easily visualized. Visualization primitives include
but are not limited to: points with multiple uncertainty intervals,
eye plots (Spiegelhalter D., 1999) <doi:10.1111/1467-985X.00120>,
density plots, gradient plots, dot plots (Wilkinson L., 1999) <doi:10.1080/00031305.1999.10474474>,
quantile dot plots (Kay M., Kola T., Hullman J., Munson S., 2016) <doi:10.1145/2858036.2858558>,
complementary cumulative distribution function
barplots (Fernandes M., Walls L., Munson S., Hullman J., Kay M., 2018) <doi:10.1145/3173574.3173718>,
and fit curves with multiple uncertainty ribbons.
Author: Matthew Kay [aut, cre]
Maintainer: Matthew Kay <mjskay@northwestern.edu>
Diff between ggdist versions 2.3.0 dated 2020-10-30 and 2.4.0 dated 2021-01-04
DESCRIPTION | 23 MD5 | 118 NAMESPACE | 400 +- NEWS.md | 29 R/curve_interval.R | 21 R/cut_cdf_qi.R |only R/draw_key_slabinterval.R | 192 - R/geom_dotsinterval.R | 1126 +++--- R/geom_interval.R | 2 R/geom_lineribbon.R | 23 R/geom_slabinterval.R | 1659 +++++----- R/lkjcorr_marginal.R | 4 R/parse_dist.R | 12 R/scale_colour_ramp.R |only R/scales.R | 623 +-- R/stat_dist_slabinterval.R | 70 R/stat_interval.R | 2 R/stat_sample_slabinterval.R | 122 R/stat_slabinterval.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/freq-uncertainty-vis.R | 36 inst/doc/freq-uncertainty-vis.Rmd | 508 +-- inst/doc/freq-uncertainty-vis.html | 443 -- inst/doc/lineribbon.R | 83 inst/doc/lineribbon.Rmd | 738 ++-- inst/doc/lineribbon.html | 653 +-- inst/doc/slabinterval.R | 75 inst/doc/slabinterval.Rmd | 1583 +++++---- inst/doc/slabinterval.html | 885 ++--- man/curve_interval.Rd | 9 man/cut_cdf_qi.Rd |only man/geom_dotsinterval.Rd | 668 ++-- man/geom_interval.Rd | 436 +- man/geom_lineribbon.Rd | 2 man/geom_pointinterval.Rd | 426 +- man/geom_slabinterval.Rd | 508 +-- man/lkjcorr_marginal.Rd | 4 man/parse_dist.Rd | 10 man/scale_colour_ramp.Rd |only man/scales.Rd | 522 +-- man/stat_dist_slabinterval.Rd | 739 ++-- man/stat_interval.Rd | 410 +- man/stat_pointinterval.Rd | 406 +- man/stat_sample_slabinterval.Rd | 685 ++-- man/stat_slabinterval.Rd | 410 +- tests/figs/curve-interval |only tests/figs/geom-dotsinterval/stat-dist-dots-with-dist-normal.svg | 486 +- tests/figs/scale-colour-ramp |only tests/figs/stat-cdfinterval/vertical-ccdf-bar-plot-with-dodging-3-groups.svg | 8 tests/figs/stat-dist/dist-slab-beta-2-2.svg |only tests/figs/stat-dist/stat-dist-with-factor-dist-name.svg | 102 tests/figs/stat-sample/pdf-and-cdf-on-a-sample-slabinterval.svg |only tests/testthat/test.curve_interval.R |only tests/testthat/test.scale_colour_ramp.R |only tests/testthat/test.stat_dist_slabinterval.R | 13 tests/testthat/test.stat_sample_slabinterval.R | 16 vignettes/freq-uncertainty-vis.Rmd | 508 +-- vignettes/lineribbon.Rmd | 738 ++-- vignettes/slabinterval.Rmd | 1583 +++++---- 60 files changed, 9348 insertions(+), 8774 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
'batchtools'
Description: Implementation of the Future API on top of the 'batchtools' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future.apply::future_lapply(files, FUN = process)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.batchtools versions 0.9.0 dated 2020-04-14 and 0.10.0 dated 2021-01-04
future.batchtools-0.10.0/future.batchtools/DESCRIPTION | 12 future.batchtools-0.10.0/future.batchtools/MD5 | 66 +- future.batchtools-0.10.0/future.batchtools/NAMESPACE | 5 future.batchtools-0.10.0/future.batchtools/NEWS | 32 + future.batchtools-0.10.0/future.batchtools/R/BatchtoolsFuture-class.R | 281 +++++----- future.batchtools-0.10.0/future.batchtools/R/options.R | 26 future.batchtools-0.10.0/future.batchtools/R/resources_OP.R | 6 future.batchtools-0.10.0/future.batchtools/build/vignette.rds |binary future.batchtools-0.10.0/future.batchtools/inst/CITATION |only future.batchtools-0.10.0/future.batchtools/inst/WORDLIST | 56 + future.batchtools-0.10.0/future.batchtools/inst/doc/future.batchtools.html | 12 future.batchtools-0.10.0/future.batchtools/inst/doc/future.batchtools.md.rsp | 12 future.batchtools-0.10.0/future.batchtools/man/BatchtoolsFuture.Rd | 9 future.batchtools-0.10.0/future.batchtools/man/BatchtoolsFutureError.Rd | 2 future.batchtools-0.10.0/future.batchtools/man/batchtools_custom.Rd | 7 future.batchtools-0.10.0/future.batchtools/man/batchtools_local.Rd | 2 future.batchtools-0.10.0/future.batchtools/man/batchtools_template.Rd | 5 future.batchtools-0.10.0/future.batchtools/man/future.batchtools.options.Rd | 27 future.batchtools-0.10.0/future.batchtools/man/grapes-resources-grapes.Rd | 6 future.batchtools-0.10.0/future.batchtools/man/loggedOutput.Rd |only future.batchtools-0.10.0/future.batchtools/tests/BatchtoolsFuture.R | 20 future.batchtools-0.10.0/future.batchtools/tests/BatchtoolsFutureError.R | 4 future.batchtools-0.10.0/future.batchtools/tests/batchtools_custom.R | 2 future.batchtools-0.10.0/future.batchtools/tests/batchtools_interactive.R | 2 future.batchtools-0.10.0/future.batchtools/tests/batchtools_local.R | 2 future.batchtools-0.10.0/future.batchtools/tests/batchtools_multicore.R | 2 future.batchtools-0.10.0/future.batchtools/tests/future,lazy.R | 6 future.batchtools-0.10.0/future.batchtools/tests/incl/end.R | 49 + future.batchtools-0.10.0/future.batchtools/tests/incl/start,load-only.R | 15 future.batchtools-0.10.0/future.batchtools/tests/plan.R | 27 future.batchtools-0.10.0/future.batchtools/tests/resources_OP.R | 6 future.batchtools-0.10.0/future.batchtools/tests/utils.R | 2 future.batchtools-0.10.0/future.batchtools/tests/zzz,future_lapply.R | 8 future.batchtools-0.10.0/future.batchtools/vignettes/future.batchtools.md.rsp | 12 future.batchtools-0.9.0/future.batchtools/man/await.BatchtoolsFuture.Rd |only future.batchtools-0.9.0/future.batchtools/man/status.BatchtoolsFuture.Rd |only 36 files changed, 472 insertions(+), 251 deletions(-)
More information about future.batchtools at CRAN
Permanent link
Title: Apply Function to Elements in Parallel using Futures
Description: Implementations of apply(), by(), eapply(), lapply(), Map(), .mapply(), mapply(), replicate(), sapply(), tapply(), and vapply() that can be resolved using any future-supported backend, e.g. parallel on the local machine or distributed on a compute cluster. These future_*apply() functions come with the same pros and cons as the corresponding base-R *apply() functions but with the additional feature of being able to be processed via the future framework.
Author: Henrik Bengtsson [aut, cre, cph],
R Core Team [cph, ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.apply versions 1.6.0 dated 2020-07-01 and 1.7.0 dated 2021-01-04
DESCRIPTION | 6 ++-- MD5 | 31 +++++++++++++------------ NEWS | 11 ++++++++ R/future_apply.R | 4 +-- R/future_lapply.R | 4 ++- R/future_mapply.R | 4 ++- R/future_xapply.R | 38 ++++++++++++++++++++++++++----- build/vignette.rds |binary inst/CITATION |only inst/doc/future.apply-1-overview.html | 10 ++++---- inst/doc/future.apply-1-overview.md.rsp | 10 +++----- man/future_apply.Rd | 2 - man/future_lapply.Rd | 2 - man/future_mapply.Rd | 2 - tests/future_lapply,globals.R | 10 ++++++++ tests/utils.R | 2 - vignettes/future.apply-1-overview.md.rsp | 10 +++----- 17 files changed, 97 insertions(+), 49 deletions(-)
Title: A Universal Foreach Parallel Adapter using the Future API of the
'future' Package
Description: Provides a '%dopar%' adapter such that any type of futures can
be used as backends for the 'foreach' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 0.11.0 dated 2020-12-12 and 0.12.0 dated 2021-01-04
DESCRIPTION | 8 +++---- MD5 | 17 +++++++-------- NEWS | 23 +++++++++++++++++++- R/doFuture.R | 25 ++++++++++++++++++++-- R/registerDoFuture.R | 53 ++++++++++++++++++++++++++++++++++++++++++++++- R/utils.R | 5 ++++ R/zzz.R |only inst/WORDLIST | 3 ++ man/registerDoFuture.Rd | 27 +++++++++++++++++++++++ tests/registerDoFuture.R | 18 ++++++++++++--- 10 files changed, 159 insertions(+), 20 deletions(-)
Title: Convert Dates to Arbitrary Week Definitions
Description: Which day a week starts depends heavily on the either the local or
professional context. This package is designed to be a lightweight solution
to easily switching between week-based date definitions.
Author: Zhian N. Kamvar [aut, cre]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between aweek versions 1.0.1 dated 2020-04-29 and 1.0.2 dated 2021-01-04
DESCRIPTION | 14 +- MD5 | 20 +-- NEWS.md | 14 ++ build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 260 +++++++++++++++++++++------------------ man/aweek-package.Rd | 4 tests/testthat/test-as.aweek.R | 6 tests/testthat/test-make_aweek.R | 23 +++ vignettes/introduction.Rmd | 2 11 files changed, 208 insertions(+), 140 deletions(-)
Title: Semi-Supervised Calibration of Risk with Noisy Event Times
Description: A consistent, semi-supervised, non-parametric survival curve estimator optimized for efficient use of Electronic Health Record (EHR) data with a limited number of current status labels. See van der Laan and Robins (1997) <doi:10.2307/2670119>.
Author: Yuri Ahuja [aut, cre]
Maintainer: Yuri Ahuja <Yuri_Ahuja@hms.harvard.edu>
Diff between SCORNET versions 0.1.0 dated 2020-11-12 and 0.1.1 dated 2021-01-04
DESCRIPTION | 6 +-- MD5 | 12 +++---- R/SCORNET.R | 74 ++++++++++++++++++------------------------------- README.md | 2 + inst/doc/example.html | 6 +-- man/scornet.Rd | 9 +++-- src/SCORNET_helper.cpp | 2 - 7 files changed, 49 insertions(+), 62 deletions(-)
Title: A Collection of Models that Employ a Prior Distribution on
Partitions
Description: Provides functions that fit hierarchical Gaussian and probit ordinal models.
A (covariate dependent) product partition model is used as a prior.
If a covariate dependent product partition model is selected,
then all the options detailed in Page, G.L.; Quintana, F.A.; (2018)
<doi:10.1007/s11222-017-9777-z> are available. If covariate values
are missing, then the approach detailed in Page, G.L.; Quintana, F.A.;
Mueller, P (2020) <arXiv:1912.13119> is employed. Also included in the
package is a function that fits a Gaussian likelihood spatial product
partition model that is detailed in Page, G.L.; Quintana, F.A.; (2016)
<doi:10.1214/15-BA971>.
Author: Garritt L. Page [aut, cre, cph],
S. McKay Curtis [ctb, cph],
Radford M. Neal [ctb, cph]
Maintainer: Garritt L. Page <page@stat.byu.edu>
Diff between ppmSuite versions 0.1.1 dated 2020-11-26 and 0.1.3 dated 2021-01-04
ppmSuite-0.1.1/ppmSuite/src/mcmcloop.ordinal.ppmx.c |only ppmSuite-0.1.1/ppmSuite/src/mcmcloop.ppmx.c |only ppmSuite-0.1.3/ppmSuite/DESCRIPTION | 16 - ppmSuite-0.1.3/ppmSuite/MD5 | 24 - ppmSuite-0.1.3/ppmSuite/R/ordinal_ppmx.R | 255 ++++++++++-------- ppmSuite-0.1.3/ppmSuite/R/ppmx.R | 244 +++++++++-------- ppmSuite-0.1.3/ppmSuite/man/gaussian_ppmx.Rd | 200 ++++++++------ ppmSuite-0.1.3/ppmSuite/man/ordinal_ppmx.Rd | 167 +++++++----- ppmSuite-0.1.3/ppmSuite/man/sppm.Rd | 10 ppmSuite-0.1.3/ppmSuite/src/Rutil.c | 275 ++++++++++---------- ppmSuite-0.1.3/ppmSuite/src/Rutil.h | 13 ppmSuite-0.1.3/ppmSuite/src/gaussian.ppmx.c |only ppmSuite-0.1.3/ppmSuite/src/init.c | 18 - ppmSuite-0.1.3/ppmSuite/src/mcmcloop.missing.c | 7 ppmSuite-0.1.3/ppmSuite/src/ordinal.ppmx.c |only 15 files changed, 677 insertions(+), 552 deletions(-)
Title: High Dimensional Locally-Linear Mapping
Description: Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) <DOI:10.1007/s11222-014-9461-5>) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) <https://hal.archives-ouvertes.fr/hal-01347455>) based on a mixture of Generalized Student distributions. The methods also include BLLiM (see Devijver et al (2017) <arXiv:1701.07899>) which is an extension of GLLiM with a sparse block diagonal structure for large covariance matrices (particularly interesting for transcriptomic data).
Author: Emeline Perthame (emeline.perthame@inria.fr), Florence Forbes (florence.forbes@inria.fr), Antoine Deleforge (antoine.deleforge@inria.fr), Emilie Devijver (emilie.devijver@kuleuven.be), Melina Gallopin (melina.gallopin@u-psud.fr)
Maintainer: Emeline Perthame <emeline.perthame@pasteur.fr>
Diff between xLLiM versions 2.1 dated 2017-05-23 and 2.2 dated 2021-01-04
DESCRIPTION | 11 MD5 | 25 - NAMESPACE | 7 R/bllim.R | 619 +++++++++++++++++++++++------------------------ R/gllim.R | 4 R/gllim_inverse_map.R | 2 R/thresholdAbsPath2.R | 10 README.md |only man/emgm.Rd | 2 man/gllim.Rd | 2 man/gllim_inverse_map.Rd | 2 man/sllim.Rd | 2 man/sllim_inverse_map.Rd | 2 man/xLLiM-package.Rd | 2 14 files changed, 351 insertions(+), 339 deletions(-)
Title: Random Forest with Canonical Correlation Analysis
Description: Random Forest with Canonical Correlation Analysis (RFCCA) is a
random forest method for estimating the canonical correlations between two
sets of variables depending on the subject-related covariates. The trees are
built with a splitting rule specifically designed to partition the data to
maximize the canonical correlation heterogeneity between child nodes. The
method is described in Alakus et al. (2020) <arXiv:2011.11555>. RFCCA uses
'randomForestSRC' package (Ishwaran and Kogalur, 2020) by freezing at the
version 2.9.3. The custom splitting rule feature is utilised to apply the
proposed splitting rule.
Author: Cansu Alakus [aut, cre],
Denis Larocque [aut],
Aurelie Labbe [aut],
Hemant Ishwaran [ctb] (Author of included randomForestSRC codes),
Udaya B. Kogalur [ctb] (Author of included randomForestSRC codes)
Maintainer: Cansu Alakus <cansu.alakus@hec.ca>
Diff between RFCCA versions 1.0.2 dated 2020-12-04 and 1.0.3 dated 2021-01-04
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md |only R/rfcca.utilities.R | 1 - README.md | 2 +- configure | 18 +++++++++--------- configure.ac | 2 +- inst/doc/RFCCA.html | 38 +++++++++++++++++++------------------- 8 files changed, 40 insertions(+), 40 deletions(-)
Title: Enrichment Analysis Utilizing Active Subnetworks
Description: Enrichment analysis enables researchers to uncover mechanisms
underlying a phenotype. However, conventional methods for enrichment
analysis do not take into account protein-protein interaction information,
resulting in incomplete conclusions. pathfindR is a tool for enrichment
analysis utilizing active subnetworks. The main function identifies active
subnetworks in a protein-protein interaction network using a user-provided
list of genes and associated p values. It then performs enrichment analyses
on the identified subnetworks, identifying enriched terms (i.e. pathways or,
more broadly, gene sets) that possibly underlie the phenotype of interest.
pathfindR also offers functionalities to cluster the enriched terms and
identify representative terms in each cluster, to score the enriched terms
per sample and to visualize analysis results. The enrichment, clustering and
other methods implemented in pathfindR are described in detail in
Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for
Comprehensive Identification of Enriched Pathways in Omics Data Through
Active Subnetworks. Front. Genet. <doi:10.3389/fgene.2019.00858>.
Author: Ege Ulgen [cre, cph] (<https://orcid.org/0000-0003-2090-3621>),
Ozan Ozisik [aut] (<https://orcid.org/0000-0001-5980-8002>)
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 1.6.0 dated 2020-11-21 and 1.6.1 dated 2021-01-04
pathfindR-1.6.0/pathfindR/man/run_pathfindR.Rd |only pathfindR-1.6.1/pathfindR/DESCRIPTION | 6 pathfindR-1.6.1/pathfindR/MD5 | 36 pathfindR-1.6.1/pathfindR/NEWS.md | 8 pathfindR-1.6.1/pathfindR/R/clustering_functions.R | 2 pathfindR-1.6.1/pathfindR/R/comparison_functions.R | 4 pathfindR-1.6.1/pathfindR/R/core_functions.R | 4 pathfindR-1.6.1/pathfindR/R/data_generation.R | 14 pathfindR-1.6.1/pathfindR/R/enrichment_functions.R | 2 pathfindR-1.6.1/pathfindR/inst/doc/comparing_results.html | 4 pathfindR-1.6.1/pathfindR/inst/doc/intro_vignette.html | 877 +--------- pathfindR-1.6.1/pathfindR/inst/doc/manual_execution.html | 4 pathfindR-1.6.1/pathfindR/inst/doc/non_hs_analysis.html | 256 +- pathfindR-1.6.1/pathfindR/inst/doc/obtain_data.html | 4 pathfindR-1.6.1/pathfindR/inst/doc/visualization_vignette.html | 12 pathfindR-1.6.1/pathfindR/man/run_pathfindr.Rd |only pathfindR-1.6.1/pathfindR/tests/testthat/test-active_snw_functions.R | 7 pathfindR-1.6.1/pathfindR/tests/testthat/test-core_functions.R | 5 pathfindR-1.6.1/pathfindR/tests/testthat/test-data_generation.R | 3 pathfindR-1.6.1/pathfindR/tests/testthat/test-visualization_functions.R | 17 20 files changed, 297 insertions(+), 968 deletions(-)
Title: Magnetic Resonance Binning, Integration and Normalization
Description: Nuclear Magnetic Resonance is widely used in Life Science
research. The package (<http://www.kleinomicslab.com/software/>) converts 1D
or 2D data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, are replaced by positive values. All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time.
Author: Matthias Klein [aut, cre] (<https://orcid.org/0000-0001-7455-5381>)
Maintainer: Matthias Klein <klein.663@osu.edu>
Diff between mrbin versions 1.4.4 dated 2020-12-09 and 1.5.0 dated 2021-01-04
DESCRIPTION | 20 - MD5 | 14 NEWS.md | 7 R/mrbin.R | 1005 ++++++++++++++++++++++++++++++++-------------------- inst/doc/mrbin.Rnw | 10 inst/doc/mrbin.pdf |binary man/readBruker.Rd | 13 vignettes/mrbin.Rnw | 10 8 files changed, 681 insertions(+), 398 deletions(-)
Title: Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
Description: Calculates Model-Averaged Tail Area Wald
(MATA-Wald) confidence intervals, which are constructed using
single-model estimators and model weights. See Turek and Fletcher
(2012) <doi:10.1016/j.csda.2012.03.002> for details.
Author: Daniel Turek [aut, cre]
Maintainer: Daniel Turek <danielturek@gmail.com>
Diff between MATA versions 0.4 dated 2019-02-15 and 0.5 dated 2021-01-04
DESCRIPTION | 8 +++---- MD5 | 6 ++--- R/MATA_package_source.R | 15 ++++++++++++- man/mata.wald.Rd | 52 +++++++++++++++++++++++++++++++----------------- 4 files changed, 54 insertions(+), 27 deletions(-)
Title: Distance-Based k-Medoids
Description: Algorithms of distance-based k-medoids clustering: simple and fast
k-medoids, ranked k-medoids, and increasing number of clusters in k-medoids.
Calculate distances for mixed variable data such as Gower, Podani, Wishart,
Huang, Harikumar-PV, and Ahmad-Dey. Cluster validation applies internal and
relative criteria. The internal criteria includes silhouette index and shadow
values. The relative criterium applies bootstrap procedure producing a heatmap
with a flexible reordering matrix algorithm such as complete, ward, or average
linkages. The cluster result can be plotted in a marked barplot or pca biplot.
Author: Weksi Budiaji
Maintainer: Weksi Budiaji <budiaji@untirta.ac.id>
Diff between kmed versions 0.3.0 dated 2019-06-14 and 0.4.0 dated 2021-01-04
kmed-0.3.0/kmed/R/shadow.R |only kmed-0.3.0/kmed/R/silhoutte.R |only kmed-0.3.0/kmed/R/stepkmed.R |only kmed-0.3.0/kmed/inst/doc/kmed.R |only kmed-0.3.0/kmed/inst/doc/kmed.Rmd |only kmed-0.3.0/kmed/inst/doc/kmed.html |only kmed-0.3.0/kmed/man/shadow.Rd |only kmed-0.3.0/kmed/man/silhoutte.Rd |only kmed-0.3.0/kmed/man/stepkmed.Rd |only kmed-0.3.0/kmed/vignettes/kmed.Rmd |only kmed-0.4.0/kmed/DESCRIPTION | 28 +++++++-------- kmed-0.4.0/kmed/MD5 | 44 +++++++++++------------- kmed-0.4.0/kmed/NAMESPACE | 5 +- kmed-0.4.0/kmed/NEWS.md | 36 +++++++++++--------- kmed-0.4.0/kmed/R/csv.R | 20 +++++++---- kmed-0.4.0/kmed/R/fastkmed.R | 14 +++++++ kmed-0.4.0/kmed/R/inckmed.R | 61 +++++++++++++++++++++++++++++++++- kmed-0.4.0/kmed/R/msv.R |only kmed-0.4.0/kmed/R/rankkmed.R | 2 - kmed-0.4.0/kmed/R/sil.R | 2 + kmed-0.4.0/kmed/R/skm.R |only kmed-0.4.0/kmed/R/weightednum.R | 58 -------------------------------- kmed-0.4.0/kmed/build/vignette.rds |binary kmed-0.4.0/kmed/inst/doc/kmedoid.R |only kmed-0.4.0/kmed/inst/doc/kmedoid.Rmd |only kmed-0.4.0/kmed/inst/doc/kmedoid.html |only kmed-0.4.0/kmed/man/csv.Rd | 14 +++++-- kmed-0.4.0/kmed/man/fastkmed.Rd | 2 - kmed-0.4.0/kmed/man/msv.Rd |only kmed-0.4.0/kmed/man/rankkmed.Rd | 2 - kmed-0.4.0/kmed/man/skm.Rd |only kmed-0.4.0/kmed/vignettes/kmedoid.Rmd |only 32 files changed, 160 insertions(+), 128 deletions(-)
Title: Portfolio Optimization Methods
Description: Collection of functions to optimize portfolio weights using quadratic programming. This package includes different functions to compute portfolio weights based on different constraints and methods. For more information see Markowitz, H.M. (1952), <doi:10.2307/2975974>. Analysis of Investments & Management of Portfolios [2012, ISBN:978-8131518748].
Author: Anurag Agrawal [aut, cre] (<https://orcid.org/0000-0003-2272-8273>)
Maintainer: Anurag Agrawal <agrawalanurag1999@gmail.com>
Diff between PortfolioAnalysis versions 1.1 dated 2020-11-08 and 1.1.1 dated 2021-01-04
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
More information about PortfolioAnalysis at CRAN
Permanent link
Title: Multilevel Mediation Analysis
Description: Do multilevel mediation analysis with generalized additive multilevel models. The analysis method is described in Yu and Li (2020), "Third-Variable Effect Analysis with Multilevel Additive Models", PLoS ONE 15(10): e0241072.
Author: Qingzhao Yu, Bin Li
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mlma versions 6.0-0 dated 2020-12-11 and 6.0-1 dated 2021-01-04
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 1 + R/mlma.r | 27 ++++++++++++++++----------- inst/doc/MLMAvignette.html | 36 ++++++++++++++++++------------------ man/joint.effect.Rd | 11 ++++++++--- 6 files changed, 54 insertions(+), 43 deletions(-)
Title: A Future API for Parallel Processing using 'callr'
Description: Implementation of the Future API on top of the 'callr' package. This allows you to process futures, as defined by the 'future' package, in parallel out of the box, on your local (Linux, macOS, Windows, ...) machine. Contrary to backends relying on the 'parallel' package (e.g. 'future::multisession'), the 'callr' backend provided here can run more than 125 parallel R processes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.callr versions 0.5.0 dated 2019-09-28 and 0.6.0 dated 2021-01-04
future.callr-0.5.0/future.callr/man/await.CallrFuture.Rd |only future.callr-0.6.0/future.callr/DESCRIPTION | 10 +- future.callr-0.6.0/future.callr/MD5 | 23 ++--- future.callr-0.6.0/future.callr/NAMESPACE | 4 future.callr-0.6.0/future.callr/NEWS | 15 +++ future.callr-0.6.0/future.callr/R/CallrFuture-class.R | 61 ++++----------- future.callr-0.6.0/future.callr/R/nbrOfFreeWorkers.R |only future.callr-0.6.0/future.callr/R/package.R | 3 future.callr-0.6.0/future.callr/build/vignette.rds |binary future.callr-0.6.0/future.callr/inst/CITATION |only future.callr-0.6.0/future.callr/man/CallrFuture.Rd | 15 ++- future.callr-0.6.0/future.callr/man/callr.Rd | 11 ++ future.callr-0.6.0/future.callr/tests/plan.R | 2 future.callr-0.6.0/future.callr/tests/utils.R | 2 14 files changed, 79 insertions(+), 67 deletions(-)
Title: Create American Psychological Association (APA) Style Tables
Description: A common task faced by researchers is the creation of APA style
(i.e., American Psychological Association style) tables from statistical
output. In R a large number of function calls are often needed to obtain all of
the desired information for a single APA style table. As well, the process of
manually creating APA style tables in a word processor is prone to transcription
errors. This package creates Word files (.doc files) containing APA style tables
for several types of analyses. Using this package minimizes transcription errors
and reduces the number commands needed by the user.
Author: David Stanley [aut, cre]
Maintainer: David Stanley <dstanley@uoguelph.ca>
Diff between apaTables versions 2.0.5 dated 2018-08-29 and 2.0.8 dated 2021-01-04
apaTables-2.0.5/apaTables/build |only apaTables-2.0.5/apaTables/inst |only apaTables-2.0.5/apaTables/vignettes |only apaTables-2.0.8/apaTables/DESCRIPTION | 15 +-- apaTables-2.0.8/apaTables/MD5 | 82 ++++++----------- apaTables-2.0.8/apaTables/NEWS.md | 4 apaTables-2.0.8/apaTables/R/apaANOVATable1way.R | 2 apaTables-2.0.8/apaTables/R/apaANOVATable2way.R | 2 apaTables-2.0.8/apaTables/R/apaAOVTable.R | 2 apaTables-2.0.8/apaTables/R/apaCorrelationTable.R | 27 ++++- apaTables-2.0.8/apaTables/R/apaDvalueTable.R | 2 apaTables-2.0.8/apaTables/R/apaEZANOVA.R | 4 apaTables-2.0.8/apaTables/R/apaRegressionBootTable.R | 11 +- apaTables-2.0.8/apaTables/R/apaRegressionTable.R | 15 ++- apaTables-2.0.8/apaTables/R/apaTables.R | 14 +- apaTables-2.0.8/apaTables/R/data-album.R | 2 apaTables-2.0.8/apaTables/R/data-dating_wide.R | 2 apaTables-2.0.8/apaTables/R/data-drink_attitude_wide.R | 2 apaTables-2.0.8/apaTables/R/data-eysenck.R | 2 apaTables-2.0.8/apaTables/R/data-goggles.R | 2 apaTables-2.0.8/apaTables/R/data-viagra.R | 2 apaTables-2.0.8/apaTables/man/Eysenck.Rd | 8 + apaTables-2.0.8/apaTables/man/album.Rd | 8 + apaTables-2.0.8/apaTables/man/apa.1way.table.Rd | 13 ++ apaTables-2.0.8/apaTables/man/apa.2way.table.Rd | 16 ++- apaTables-2.0.8/apaTables/man/apa.aov.table.Rd | 11 +- apaTables-2.0.8/apaTables/man/apa.cor.table.Rd | 14 ++ apaTables-2.0.8/apaTables/man/apa.d.table.Rd | 13 ++ apaTables-2.0.8/apaTables/man/apa.ezANOVA.table.Rd | 13 +- apaTables-2.0.8/apaTables/man/apa.reg.boot.table.Rd | 19 ++- apaTables-2.0.8/apaTables/man/apa.reg.table.Rd | 11 +- apaTables-2.0.8/apaTables/man/apaTables.Rd | 9 - apaTables-2.0.8/apaTables/man/dating_wide.Rd | 8 + apaTables-2.0.8/apaTables/man/drink_attitude_wide.Rd | 8 + apaTables-2.0.8/apaTables/man/fidler_thompson.Rd | 6 - apaTables-2.0.8/apaTables/man/goggles.Rd | 8 + apaTables-2.0.8/apaTables/man/viagra.Rd | 8 + 37 files changed, 231 insertions(+), 134 deletions(-)
Title: A Toolbox for Linear Discriminant Analysis with Penalties
Description: Integrates several popular high-dimensional methods based on Linear Discriminant Analysis (LDA) and provides a comprehensive and user-friendly toolbox for linear, semi-parametric and tensor-variate classification as mentioned in Yuqing Pan, Qing Mai and Xin Zhang (2019) <arXiv:1904.03469>. Functions are included for covariate adjustment, model fitting, cross validation and prediction.
Author: Yuqing Pan <yuqing.pan@stat.fsu.edu>,
Qing Mai <mai@stat.fsu.edu>,
Xin Zhang <henry@stat.fsu.edu>
Maintainer: Yuqing Pan <yuqing.pan@stat.fsu.edu>
Diff between TULIP versions 1.0.1 dated 2020-06-29 and 1.0.2 dated 2021-01-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/adjust_predict.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis, especially raster data. Methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is very similar to the 'raster' package; but 'terra' is simpler, better, and faster.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Karl Forner [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 0.9-11 dated 2020-12-01 and 1.0-7 dated 2021-01-04
terra-0.9-11/terra/R/SpatDataSet.R |only terra-0.9-11/terra/R/plotLegend.R |only terra-0.9-11/terra/R/plotVector.R |only terra-0.9-11/terra/man/desc.Rd |only terra-0.9-11/terra/man/gdal_warnings.Rd |only terra-0.9-11/terra/src/categories.cpp |only terra-0.9-11/terra/src/cellnumber.cpp |only terra-0.9-11/terra/src/extent.cpp |only terra-0.9-11/terra/src/gdal_info.cpp |only terra-0.9-11/terra/src/gdal_info.h |only terra-0.9-11/terra/src/modal.cpp |only terra-0.9-11/terra/src/modal.h |only terra-0.9-11/terra/src/moving.cpp |only terra-0.9-11/terra/src/polygonize.cpp |only terra-0.9-11/terra/src/raster_coerce.cpp |only terra-0.9-11/terra/src/reclassify.cpp |only terra-0.9-11/terra/src/rectify.cpp |only terra-0.9-11/terra/src/resample.cpp |only terra-0.9-11/terra/src/sources.cpp |only terra-0.9-11/terra/src/warp.cpp |only terra-1.0-7/terra/DESCRIPTION | 13 terra-1.0-7/terra/MD5 | 454 ++++---- terra-1.0-7/terra/NAMESPACE | 6 terra-1.0-7/terra/R/Aclasses.R | 70 - terra-1.0-7/terra/R/Adepracated.R |only terra-1.0-7/terra/R/Agenerics.R | 238 ++-- terra-1.0-7/terra/R/Arith_generics.R | 220 ++-- terra-1.0-7/terra/R/RcppExports.R | 16 terra-1.0-7/terra/R/SpatRasterDataset.R |only terra-1.0-7/terra/R/SpatVectorCollection.R |only terra-1.0-7/terra/R/aggregate.R | 177 ++- terra-1.0-7/terra/R/animate.R | 4 terra-1.0-7/terra/R/app.R | 63 - terra-1.0-7/terra/R/arith.R | 8 terra-1.0-7/terra/R/autocor.R |only terra-1.0-7/terra/R/cells.R | 46 terra-1.0-7/terra/R/click.R | 15 terra-1.0-7/terra/R/coerce.R | 128 +- terra-1.0-7/terra/R/colors.R | 42 terra-1.0-7/terra/R/crosstab.R | 20 terra-1.0-7/terra/R/crs.R | 82 - terra-1.0-7/terra/R/dimensions.R | 26 terra-1.0-7/terra/R/distance.R | 81 + terra-1.0-7/terra/R/draw.R | 6 terra-1.0-7/terra/R/expand.R | 16 terra-1.0-7/terra/R/extent.R | 132 +- terra-1.0-7/terra/R/extract.R | 204 ++- terra-1.0-7/terra/R/focal.R | 28 terra-1.0-7/terra/R/focalMat.R | 12 terra-1.0-7/terra/R/gdal.R | 102 + terra-1.0-7/terra/R/generics.R | 315 +++-- terra-1.0-7/terra/R/geocolors.R |only terra-1.0-7/terra/R/geom.R | 170 ++- terra-1.0-7/terra/R/hist.R | 32 terra-1.0-7/terra/R/ifelse.R | 12 terra-1.0-7/terra/R/image.R | 8 terra-1.0-7/terra/R/init.R | 14 terra-1.0-7/terra/R/inset.R |only terra-1.0-7/terra/R/interpolate.R | 6 terra-1.0-7/terra/R/lapp.R | 29 terra-1.0-7/terra/R/levels.R | 81 + terra-1.0-7/terra/R/lines.R |only terra-1.0-7/terra/R/match.R | 4 terra-1.0-7/terra/R/math.R | 30 terra-1.0-7/terra/R/merge.R | 18 terra-1.0-7/terra/R/messages.R | 41 terra-1.0-7/terra/R/names.R | 86 + terra-1.0-7/terra/R/ncdf.R | 181 +++ terra-1.0-7/terra/R/options.R | 52 terra-1.0-7/terra/R/pack.R | 18 terra-1.0-7/terra/R/plot.R | 95 + terra-1.0-7/terra/R/plot2rasters.R | 50 terra-1.0-7/terra/R/plotExtent.R | 11 terra-1.0-7/terra/R/plotRGB.R | 30 terra-1.0-7/terra/R/plot_legend.R | 153 ++ terra-1.0-7/terra/R/plot_raster.R | 293 +---- terra-1.0-7/terra/R/plot_scale.R | 75 - terra-1.0-7/terra/R/plot_vector.R |only terra-1.0-7/terra/R/predict.R | 58 - terra-1.0-7/terra/R/rapp.R | 8 terra-1.0-7/terra/R/rast.R | 144 +- terra-1.0-7/terra/R/rasterize.R | 120 +- terra-1.0-7/terra/R/read-write.R | 53 terra-1.0-7/terra/R/relate.R |only terra-1.0-7/terra/R/replace.R | 62 - terra-1.0-7/terra/R/sample.R | 352 +++++- terra-1.0-7/terra/R/select.R | 38 terra-1.0-7/terra/R/show.R | 255 +++- terra-1.0-7/terra/R/spatvec.R | 68 - terra-1.0-7/terra/R/subset.R | 78 - terra-1.0-7/terra/R/tapp.R | 10 terra-1.0-7/terra/R/tempfiles.R | 17 terra-1.0-7/terra/R/time.R | 41 terra-1.0-7/terra/R/values.R | 45 terra-1.0-7/terra/R/vect.R | 76 - terra-1.0-7/terra/R/window.R | 14 terra-1.0-7/terra/R/xyRowColCell.R | 18 terra-1.0-7/terra/R/zonal.R | 22 terra-1.0-7/terra/R/zoom.R | 30 terra-1.0-7/terra/R/zzz.R | 2 terra-1.0-7/terra/inst/ex/elev.tif |only terra-1.0-7/terra/inst/ex/logo.tif |binary terra-1.0-7/terra/inst/ex/test.tif |binary terra-1.0-7/terra/inst/tinytest/test_extract.R |only terra-1.0-7/terra/inst/tinytest/test_geom.R | 10 terra-1.0-7/terra/inst/tinytest/test_matrix-input.R | 3 terra-1.0-7/terra/inst/tinytest/test_window.R |only terra-1.0-7/terra/man/NAflag.Rd |only terra-1.0-7/terra/man/add.Rd |only terra-1.0-7/terra/man/adjacent.Rd | 18 terra-1.0-7/terra/man/aggregate.Rd | 24 terra-1.0-7/terra/man/app.Rd | 12 terra-1.0-7/terra/man/area.Rd | 22 terra-1.0-7/terra/man/as.spatvector.Rd | 5 terra-1.0-7/terra/man/autocor.Rd |only terra-1.0-7/terra/man/barplot.Rd |only terra-1.0-7/terra/man/boundaries.Rd | 2 terra-1.0-7/terra/man/boxplot.Rd |only terra-1.0-7/terra/man/buffer.Rd | 4 terra-1.0-7/terra/man/c.Rd | 42 terra-1.0-7/terra/man/cells.Rd | 7 terra-1.0-7/terra/man/centroids.Rd |only terra-1.0-7/terra/man/chull.Rd |only terra-1.0-7/terra/man/click.Rd | 15 terra-1.0-7/terra/man/collapse.Rd |only terra-1.0-7/terra/man/colors.Rd | 27 terra-1.0-7/terra/man/contour.Rd | 10 terra-1.0-7/terra/man/copy.Rd |only terra-1.0-7/terra/man/cover.Rd | 24 terra-1.0-7/terra/man/crop.Rd | 21 terra-1.0-7/terra/man/crs.Rd | 5 terra-1.0-7/terra/man/describe.Rd |only terra-1.0-7/terra/man/dimensions.Rd | 25 terra-1.0-7/terra/man/distance.Rd | 55 - terra-1.0-7/terra/man/erase.Rd |only terra-1.0-7/terra/man/ext.Rd | 15 terra-1.0-7/terra/man/extract.Rd | 32 terra-1.0-7/terra/man/factors.Rd | 44 terra-1.0-7/terra/man/fill.Rd | 16 terra-1.0-7/terra/man/flip.Rd | 7 terra-1.0-7/terra/man/focal.Rd | 2 terra-1.0-7/terra/man/focalMat.Rd | 8 terra-1.0-7/terra/man/gdal.Rd |only terra-1.0-7/terra/man/geometry.Rd | 23 terra-1.0-7/terra/man/geomtype.Rd | 20 terra-1.0-7/terra/man/global.Rd | 2 terra-1.0-7/terra/man/ifelse.Rd | 5 terra-1.0-7/terra/man/image.Rd | 2 terra-1.0-7/terra/man/inset.Rd |only terra-1.0-7/terra/man/interpolate.Rd | 2 terra-1.0-7/terra/man/intersect.Rd |only terra-1.0-7/terra/man/isLonLat.Rd | 28 terra-1.0-7/terra/man/isvalid.Rd |only terra-1.0-7/terra/man/lapp.Rd | 12 terra-1.0-7/terra/man/linearUnits.Rd |only terra-1.0-7/terra/man/lines.Rd |only terra-1.0-7/terra/man/mask.Rd | 9 terra-1.0-7/terra/man/math.Rd | 15 terra-1.0-7/terra/man/minmax.Rd | 5 terra-1.0-7/terra/man/names.Rd | 56 - terra-1.0-7/terra/man/near.Rd |only terra-1.0-7/terra/man/pairs.Rd | 9 terra-1.0-7/terra/man/persp.Rd | 2 terra-1.0-7/terra/man/plot.Rd | 60 - terra-1.0-7/terra/man/plotVector.Rd | 66 - terra-1.0-7/terra/man/predict.Rd | 5 terra-1.0-7/terra/man/quantile.Rd | 5 terra-1.0-7/terra/man/rapp.Rd | 2 terra-1.0-7/terra/man/rast.Rd | 32 terra-1.0-7/terra/man/rasterize.Rd | 21 terra-1.0-7/terra/man/readwrite.Rd | 4 terra-1.0-7/terra/man/relate.Rd |only terra-1.0-7/terra/man/replace-vector.Rd | 5 terra-1.0-7/terra/man/rescale.Rd |only terra-1.0-7/terra/man/rotate.Rd | 6 terra-1.0-7/terra/man/sample.Rd | 39 terra-1.0-7/terra/man/sbar.Rd |only terra-1.0-7/terra/man/scale.Rd |only terra-1.0-7/terra/man/sds.Rd | 14 terra-1.0-7/terra/man/select.Rd | 19 terra-1.0-7/terra/man/separate.Rd | 6 terra-1.0-7/terra/man/shift.Rd | 2 terra-1.0-7/terra/man/sources.Rd | 6 terra-1.0-7/terra/man/spin.Rd |only terra-1.0-7/terra/man/subset-vector.Rd | 3 terra-1.0-7/terra/man/subset.Rd | 12 terra-1.0-7/terra/man/summarize-generics.Rd | 14 terra-1.0-7/terra/man/summary.Rd | 5 terra-1.0-7/terra/man/svc.Rd |only terra-1.0-7/terra/man/symdif.Rd |only terra-1.0-7/terra/man/tapp.Rd | 2 terra-1.0-7/terra/man/terra-package.Rd | 462 +++++--- terra-1.0-7/terra/man/terraOptions.Rd | 9 terra-1.0-7/terra/man/transpose.Rd | 3 terra-1.0-7/terra/man/union.Rd |only terra-1.0-7/terra/man/unique.Rd | 21 terra-1.0-7/terra/man/units.Rd | 9 terra-1.0-7/terra/man/values.Rd | 3 terra-1.0-7/terra/man/vect.Rd | 35 terra-1.0-7/terra/man/voronoi.Rd |only terra-1.0-7/terra/man/window.Rd | 21 terra-1.0-7/terra/man/writeCDF.Rd |only terra-1.0-7/terra/man/writeRaster.Rd | 30 terra-1.0-7/terra/man/zoom.Rd | 5 terra-1.0-7/terra/src/RcppExports.cpp | 48 terra-1.0-7/terra/src/RcppFunctions.cpp | 78 + terra-1.0-7/terra/src/RcppModule.cpp | 381 ++++--- terra-1.0-7/terra/src/aggregate.cpp | 29 terra-1.0-7/terra/src/area.cpp | 180 ++- terra-1.0-7/terra/src/arith.cpp | 164 +-- terra-1.0-7/terra/src/buffer.cpp | 4 terra-1.0-7/terra/src/crs.cpp | 143 +- terra-1.0-7/terra/src/distRaster.cpp | 261 +++- terra-1.0-7/terra/src/distance.cpp | 10 terra-1.0-7/terra/src/distance.h | 4 terra-1.0-7/terra/src/extract.cpp | 434 ++++---- terra-1.0-7/terra/src/file_utils.cpp | 2 terra-1.0-7/terra/src/focal.cpp | 49 terra-1.0-7/terra/src/gdal_algs.cpp |only terra-1.0-7/terra/src/gdal_multidimensional.cpp |only terra-1.0-7/terra/src/gdalio.cpp | 305 +++++ terra-1.0-7/terra/src/gdalio.h | 6 terra-1.0-7/terra/src/geos_methods.cpp | 815 ++++++++++++++- terra-1.0-7/terra/src/geos_spat.h | 416 +++++-- terra-1.0-7/terra/src/geosphere.cpp |only terra-1.0-7/terra/src/graticule.cpp |only terra-1.0-7/terra/src/math_utils.cpp | 137 ++ terra-1.0-7/terra/src/math_utils.h | 29 terra-1.0-7/terra/src/memory.cpp | 18 terra-1.0-7/terra/src/mosaic.cpp | 23 terra-1.0-7/terra/src/ncdf_util.cpp | 124 +- terra-1.0-7/terra/src/pointInPolygon.cpp | 12 terra-1.0-7/terra/src/ram.cpp | 2 terra-1.0-7/terra/src/ram.h | 17 terra-1.0-7/terra/src/raster_methods.cpp | 906 +++++++++++++++- terra-1.0-7/terra/src/raster_stats.cpp | 17 terra-1.0-7/terra/src/rasterize.cpp | 83 + terra-1.0-7/terra/src/read.cpp | 166 +-- terra-1.0-7/terra/src/read_gdal.cpp | 119 +- terra-1.0-7/terra/src/read_ogr.cpp | 58 - terra-1.0-7/terra/src/recycle.h | 65 + terra-1.0-7/terra/src/sample.cpp | 650 ++++++++++-- terra-1.0-7/terra/src/spatBase.h | 28 terra-1.0-7/terra/src/spatDataframe.cpp | 167 ++- terra-1.0-7/terra/src/spatDataframe.h | 3 terra-1.0-7/terra/src/spatExtent.cpp |only terra-1.0-7/terra/src/spatOptions.cpp | 36 terra-1.0-7/terra/src/spatRaster.cpp | 1073 ++++++++++++++++++-- terra-1.0-7/terra/src/spatRaster.h | 159 +- terra-1.0-7/terra/src/spatRasterMultiple.h | 67 - terra-1.0-7/terra/src/spatSources.cpp |only terra-1.0-7/terra/src/spatVector.cpp | 221 +++- terra-1.0-7/terra/src/spatVector.h | 146 ++ terra-1.0-7/terra/src/terrain.cpp | 44 terra-1.0-7/terra/src/time.cpp | 28 terra-1.0-7/terra/src/vecmath.h | 64 + terra-1.0-7/terra/src/vecmathfun.cpp | 6 terra-1.0-7/terra/src/vector_methods.cpp | 385 ++++++- terra-1.0-7/terra/src/write.cpp | 59 - terra-1.0-7/terra/src/write_gdal.cpp | 549 ++++++---- terra-1.0-7/terra/src/write_ogr.cpp | 41 261 files changed, 11702 insertions(+), 4224 deletions(-)
Title: Tools for Building, Visualizing, and Evaluating Self-Organizing
Maps
Description: A self-organizing map package with three distinguishing features:
(1) Automatic cluster centroid detection and visualization using starbursts.
(2) Maintains two models of the data: (a) a self-organizing map model (b) a centroid based clustering model.
(3) A very efficient stochastic training algorithm based on ideas from tensor algebra.
Author: Lutz Hamel [aut, cre],
Benjamin Ott [aut],
Gregory Breard [aut],
Robert Tatoian [aut],
Michael Eiger [aut],
Vishakh Gopu [aut]
Maintainer: Lutz Hamel <lutzhamel@uri.edu>
Diff between popsom versions 5.0 dated 2020-12-09 and 5.1 dated 2021-01-04
popsom-5.0/popsom/man/fitted.map.Rd |only popsom-5.0/popsom/man/marginal.map.Rd |only popsom-5.0/popsom/man/position.map.Rd |only popsom-5.0/popsom/man/predict.map.Rd |only popsom-5.0/popsom/man/significance.map.Rd |only popsom-5.0/popsom/man/starburst.map.Rd |only popsom-5.1/popsom/DESCRIPTION | 10 +- popsom-5.1/popsom/MD5 | 23 ++--- popsom-5.1/popsom/NAMESPACE | 18 +--- popsom-5.1/popsom/NEWS.md | 5 + popsom-5.1/popsom/R/map-utils.R | 129 +++++++++++++++++++++--------- popsom-5.1/popsom/man/fitted.Rd |only popsom-5.1/popsom/man/map.Rd | 24 ++--- popsom-5.1/popsom/man/marginal.Rd |only popsom-5.1/popsom/man/position.Rd |only popsom-5.1/popsom/man/predict.Rd |only popsom-5.1/popsom/man/significance.Rd |only popsom-5.1/popsom/man/starburst.Rd |only popsom-5.1/popsom/man/summary.Rd |only 19 files changed, 132 insertions(+), 77 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
The package does not require any installation of Microsoft products to be able to write Microsoft
files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] (function body_replace_all_text),
Liz Sander [ctb] (several documentation fixes),
Anton Victorson [ctb] (fixes xml structures),
Jon Calder [ctb] (update vignettes),
John Harrold [ctb] (function annotate_base),
John Muschelli [ctb] (google doc compatibility)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.3.15 dated 2020-11-01 and 0.3.16 dated 2021-01-04
DESCRIPTION | 14 +-- MD5 | 143 +++++++++++++++++----------------- NAMESPACE | 5 - NEWS.md | 15 +++ R/docx_add.R | 115 +++++++++++++++------------ R/docx_add_chunk.R | 56 +++++++------ R/docx_cursor.R | 69 ++++++++-------- R/docx_footnotes.R | 10 -- R/docx_img.R | 40 +++++++++ R/docx_part.R | 1 R/docx_replace.R | 27 ++---- R/ooxml_block_objects.R | 12 ++ R/ooxml_run_objects.R | 78 +++++++++++++++++- R/ppt_ph_manipulate.R | 35 ++++---- R/ppt_ph_with_methods.R | 42 ++++++--- R/pptx_informations.R | 16 --- R/pptx_slide_manip.R | 6 - R/read_pptx.R | 2 inst/doc/overview.html | 40 --------- man/add_slide.Rd | 3 man/body_add_break.Rd | 4 man/body_add_docx.Rd | 23 ++--- man/body_add_fpar.Rd | 12 +- man/body_add_par.Rd | 10 -- man/body_add_table.Rd | 6 - man/body_add_toc.Rd | 4 man/body_bookmark.Rd | 7 - man/body_remove.Rd | 25 +++-- man/body_replace_all_text.Rd | 8 - man/body_replace_text_at_bkm.Rd | 11 +- man/cursor.Rd | 69 ++++++++-------- man/docx_show_chunk.Rd | 8 - man/external_img.Rd | 1 man/fpar.Rd | 6 - man/ftext.Rd | 1 man/hyperlink_ftext.Rd |only man/move_slide.Rd | 2 man/officer.Rd | 2 man/on_slide.Rd | 2 man/ph_add_fpar.Rd | 15 ++- man/ph_add_par.Rd | 21 ++-- man/ph_add_text.Rd | 5 + man/ph_with.Rd | 22 +++-- man/read_pptx.Rd | 2 man/remove_slide.Rd | 2 man/run_autonum.Rd | 1 man/run_bookmark.Rd | 1 man/run_columnbreak.Rd | 1 man/run_linebreak.Rd | 1 man/run_pagebreak.Rd | 1 man/run_reference.Rd | 1 man/run_word_field.Rd | 1 man/slip_in_footnote.Rd | 10 -- man/slip_in_img.Rd | 12 +- man/slip_in_seqfield.Rd | 34 ++++---- man/slip_in_text.Rd | 16 ++- tests/testthat.R | 1 tests/testthat/test-docx-add.R | 62 +++++++------- tests/testthat/test-docx-footnotes.R | 18 +--- tests/testthat/test-docx-insert.R | 20 ++-- tests/testthat/test-docx-misc.R | 71 ++++++++-------- tests/testthat/test-docx-replace.R | 14 +-- tests/testthat/test-fp_border.R | 17 +--- tests/testthat/test-fp_cell.R | 37 ++++---- tests/testthat/test-fp_par.R | 16 +-- tests/testthat/test-fpar.R | 45 ++++++---- tests/testthat/test-pptx-add-at.R | 18 +--- tests/testthat/test-pptx-add.R | 101 +++++++++++------------- tests/testthat/test-pptx-misc.R | 28 +++--- tests/testthat/test-pptx-move.R | 10 +- tests/testthat/test-pptx-selections.R | 12 +- tests/testthat/test-pptx-table.R | 2 tests/testthat/test-properties.R | 7 - 73 files changed, 851 insertions(+), 704 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
Author: Jan Graffelman [aut, cre],
Christopher Chang [ctb],
Xavi Puig [ctb],
Jan Wigginton [ctb],
Leonardo Ortoleva [ctb],
William R. Engels [ctb]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.7.0 dated 2020-12-14 and 1.7.1 dated 2021-01-04
DESCRIPTION | 8 ++++---- MD5 | 35 +++++++++++++++++++---------------- NAMESPACE | 5 +++-- R/HWNetwork.R |only build/partial.rdb |only inst/doc/HardyWeinberg.Rnw | 2 +- inst/doc/HardyWeinberg.pdf |binary man/HWAIC.Rd | 5 ++--- man/HWChisq.Rd | 2 +- man/HWExactStats.Rd | 2 +- man/HWLRAllTests.Rd | 6 +++--- man/HWLRtest.Rd | 4 ++-- man/HWMissing.Rd | 2 +- man/HWNetwork.Rd |only man/HWPerm.mult.Rd | 2 +- man/HWTriExact.Rd | 2 +- man/HardyWeinberg-package.Rd | 6 +++--- man/dgraffelmanweir.bi.Rd | 2 +- src/HWxChromosomal.cpp | 29 ++++++++++++++++------------- vignettes/HardyWeinberg.Rnw | 2 +- 20 files changed, 60 insertions(+), 54 deletions(-)
Title: Spatial Data Framework for ggplot2
Description: Spatial data plus the power of the ggplot2 framework means easier mapping when input
data are already in the form of spatial objects.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Brent Thorne [ctb] (<https://orcid.org/0000-0002-1099-3857>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between ggspatial versions 1.1.4 dated 2020-07-12 and 1.1.5 dated 2021-01-04
ggspatial-1.1.4/ggspatial/tests/testthat/test-test-layer-spatial-stars.R |only ggspatial-1.1.5/ggspatial/DESCRIPTION | 8 - ggspatial-1.1.5/ggspatial/MD5 | 49 +++++----- ggspatial-1.1.5/ggspatial/NEWS.md |only ggspatial-1.1.5/ggspatial/R/annotation-map-tile.R | 38 +++++-- ggspatial-1.1.5/ggspatial/R/layer-spatial-stars.R | 48 ++++++--- ggspatial-1.1.5/ggspatial/R/longlake-data.R | 10 +- ggspatial-1.1.5/ggspatial/man/annotation_map_tile.Rd | 2 ggspatial-1.1.5/ggspatial/man/figures/README-fig-layer-spatial-sf-1.png |binary ggspatial-1.1.5/ggspatial/man/ggspatial-package.Rd | 2 ggspatial-1.1.5/ggspatial/man/layer_spatial.stars.Rd | 2 ggspatial-1.1.5/ggspatial/man/load_longlake_data.Rd | 2 ggspatial-1.1.5/ggspatial/tests/testthat/test-annotation-map-tile.R | 10 ++ ggspatial-1.1.5/ggspatial/tests/testthat/test-annotation-north-arrow.R | 9 + ggspatial-1.1.5/ggspatial/tests/testthat/test-annotation-scale.R | 5 + ggspatial-1.1.5/ggspatial/tests/testthat/test-df-spatial-raster.R | 2 ggspatial-1.1.5/ggspatial/tests/testthat/test-df-spatial-sf.R | 1 ggspatial-1.1.5/ggspatial/tests/testthat/test-fixed-aspect.R | 1 ggspatial-1.1.5/ggspatial/tests/testthat/test-geom-polypath.R | 2 ggspatial-1.1.5/ggspatial/tests/testthat/test-geom-spatial-rect.R | 2 ggspatial-1.1.5/ggspatial/tests/testthat/test-geom-spatial-segment.R | 3 ggspatial-1.1.5/ggspatial/tests/testthat/test-geom-spatial-xline.R | 4 ggspatial-1.1.5/ggspatial/tests/testthat/test-geom-spatial.R | 6 + ggspatial-1.1.5/ggspatial/tests/testthat/test-layer-spatial-bbox.R | 2 ggspatial-1.1.5/ggspatial/tests/testthat/test-layer-spatial-raster.R | 4 ggspatial-1.1.5/ggspatial/tests/testthat/test-layer-spatial-stars.R |only ggspatial-1.1.5/ggspatial/tests/testthat/test-layer-spatial.R | 4 27 files changed, 152 insertions(+), 64 deletions(-)
Title: A Future API for Parallel and Distributed Processing using
BatchJobs
Description: Implementation of the Future API on top of the 'BatchJobs' package.
This allows you to process futures, as defined by the 'future' package,
in parallel out of the box, not only on your local machine or ad-hoc
cluster of machines, but also via high-performance compute ('HPC') job
schedulers such as 'LSF', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS',
e.g. 'y <- future.apply::future_lapply(files, FUN = process)'.
NOTE: The 'BatchJobs' package is deprecated in favor of the 'batchtools'
package. Because of this, it is recommended to use the 'future.batchtools'
package instead of this package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.BatchJobs versions 0.16.2 dated 2019-09-29 and 0.17.0 dated 2021-01-04
future.BatchJobs-0.16.2/future.BatchJobs/man/await.BatchJobsFuture.Rd |only future.BatchJobs-0.17.0/future.BatchJobs/DESCRIPTION | 11 future.BatchJobs-0.17.0/future.BatchJobs/MD5 | 62 ++--- future.BatchJobs-0.17.0/future.BatchJobs/NAMESPACE | 1 future.BatchJobs-0.17.0/future.BatchJobs/NEWS | 21 + future.BatchJobs-0.17.0/future.BatchJobs/R/BatchJobsFuture-class.R | 121 ++++------ future.BatchJobs-0.17.0/future.BatchJobs/R/future.BatchJobs-package.R | 1 future.BatchJobs-0.17.0/future.BatchJobs/R/zzz.R | 8 future.BatchJobs-0.17.0/future.BatchJobs/build/vignette.rds |binary future.BatchJobs-0.17.0/future.BatchJobs/inst/WORDLIST | 93 +++++++ future.BatchJobs-0.17.0/future.BatchJobs/inst/doc/future.BatchJobs.html | 16 - future.BatchJobs-0.17.0/future.BatchJobs/inst/doc/future.BatchJobs.md.rsp | 19 + future.BatchJobs-0.17.0/future.BatchJobs/man/BatchJobsFuture.Rd | 20 + future.BatchJobs-0.17.0/future.BatchJobs/man/batchjobs_custom.Rd | 17 + future.BatchJobs-0.17.0/future.BatchJobs/man/batchjobs_local.Rd | 13 - future.BatchJobs-0.17.0/future.BatchJobs/man/batchjobs_multicore.Rd | 12 future.BatchJobs-0.17.0/future.BatchJobs/man/batchjobs_template.Rd | 75 ++++-- future.BatchJobs-0.17.0/future.BatchJobs/man/delete.BatchJobsFuture.Rd | 13 - future.BatchJobs-0.17.0/future.BatchJobs/man/future.BatchJobs.Rd | 10 future.BatchJobs-0.17.0/future.BatchJobs/tests/BatchJobsFuture.R | 14 - future.BatchJobs-0.17.0/future.BatchJobs/tests/batchjobs_job.delay.R | 2 future.BatchJobs-0.17.0/future.BatchJobs/tests/dotdotdot.R | 2 future.BatchJobs-0.17.0/future.BatchJobs/tests/future,labels.R | 1 future.BatchJobs-0.17.0/future.BatchJobs/tests/future,lazy.R | 12 future.BatchJobs-0.17.0/future.BatchJobs/tests/globals,formulas.R | 9 future.BatchJobs-0.17.0/future.BatchJobs/tests/globals,subassignment.R | 10 future.BatchJobs-0.17.0/future.BatchJobs/tests/globals,tricky.R | 7 future.BatchJobs-0.17.0/future.BatchJobs/tests/incl/start,load-only.R | 4 future.BatchJobs-0.17.0/future.BatchJobs/tests/plan.R | 2 future.BatchJobs-0.17.0/future.BatchJobs/tests/utils.R | 2 future.BatchJobs-0.17.0/future.BatchJobs/tests/zzz,future_lapply.R | 7 future.BatchJobs-0.17.0/future.BatchJobs/vignettes/future.BatchJobs.md.rsp | 19 + future.BatchJobs-0.17.0/future.BatchJobs/vignettes/imgs |only 33 files changed, 367 insertions(+), 237 deletions(-)
More information about future.BatchJobs at CRAN
Permanent link
Title: Sensitivity Analyses for Unmeasured Confounding and Other Biases
in Observational Studies and Meta-Analyses
Description: Conducts sensitivity analyses for unmeasured confounding,selection bias, and measurement error (individually or in combination) in individual studies. Also conducts sensitivity analyses for unmeasured confounding in meta-analyses.
Author: Maya B. Mathur [cre, aut],
Louisa H. Smith [aut],
Peng Ding [aut],
Tyler J. VanderWeele [aut]
Maintainer: Maya B. Mathur <mmathur@stanford.edu>
Diff between EValue versions 4.1.0 dated 2020-11-18 and 4.1.1 dated 2021-01-04
DESCRIPTION | 6 MD5 | 26 +-- R/meta-analysis.R | 231 +++++++++++++++++++++++------------ build/vignette.rds |binary inst/doc/meta-analysis.Rmd | 4 inst/doc/meta-analysis.html | 10 - inst/doc/unmeasured-confounding.Rmd | 4 inst/doc/unmeasured-confounding.html | 4 man/confounded_meta.Rd | 26 ++- man/sens_plot.Rd | 10 - man/soyMeta.Rd | 2 tests/testthat/testthat.R | 121 ++++++++++++++---- vignettes/meta-analysis.Rmd | 4 vignettes/unmeasured-confounding.Rmd | 4 14 files changed, 302 insertions(+), 150 deletions(-)
Title: Covariate-Adjusted Tensor Classification in High-Dimensions
Description: Performs classification and variable selection on high-dimensional tensors (multi-dimensional arrays) after adjusting for additional covariates (scalar or vectors) as CATCH model in Pan, Mai and Zhang (2018) <arXiv:1805.04421>. The low-dimensional covariates and the high-dimensional tensors are jointly modeled to predict a categorical outcome in a multi-class discriminant analysis setting. The Covariate-Adjusted Tensor Classification in High-dimensions (CATCH) model is fitted in two steps: (1) adjust for the covariates within each class; and (2) penalized estimation with the adjusted tensor using a cyclic block coordinate descent algorithm. The package can provide a solution path for tuning parameter in the penalized estimation step. Special case of the CATCH model includes linear discriminant analysis model and matrix (or tensor) discriminant analysis without covariates.
Author: Yuqing Pan <yuqing.pan@stat.fsu.edu>,
Qing Mai <mai@stat.fsu.edu>,
Xin Zhang <henry@stat.fsu.edu>
Maintainer: Yuqing Pan <yuqing.pan@stat.fsu.edu>
Diff between catch versions 1.0 dated 2018-05-14 and 1.0.1 dated 2021-01-04
DESCRIPTION | 6 +- MD5 | 4 - R/adjust_predict.R | 144 ++++++++++++++++++++++++++--------------------------- 3 files changed, 77 insertions(+), 77 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (<https://orcid.org/0000-0001-5411-1409>),
Cameron Smith [aut],
George Sugihara [aut, ccp] (<https://orcid.org/0000-0002-2863-6946>),
Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
Erik Saberski [ctb] (<https://orcid.org/0000-0002-6475-6187>),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.7.1 dated 2020-12-03 and 1.7.3 dated 2021-01-04
DESCRIPTION | 8 MD5 | 22 - NEWS | 4 src/cppEDM/src/EDM.cc | 2 src/cppEDM/src/EDM.h | 11 src/cppEDM/src/EDM_Formatting.cc | 178 ++++++------ src/cppEDM/src/EDM_Neighbors.cc | 59 +--- src/cppEDM/src/Parameter.cc | 567 ++++++++++++++++++--------------------- src/cppEDM/src/Parameter.h | 2 src/cppEDM/src/SMap.cc | 89 +++--- src/cppEDM/src/Simplex.cc | 14 vignettes/rEDM-tutorial.html | 58 +-- 12 files changed, 497 insertions(+), 517 deletions(-)
Title: Running Interrupted Time Series Analysis
Description: Two functions for running and then post-estimating an Interrupted Time Series Analysis model. This is a solution for running time series analyses on temporally short data. See English (2019) 'The its.analysis R package - Modelling short time series data' <https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3398189> for an overview of the method.
Author: Patrick English
Maintainer: Patrick English <p.english@exeter.ac.uk>
Diff between its.analysis versions 1.4.1 dated 2019-07-22 and 1.6.0 dated 2021-01-04
DESCRIPTION | 8 +++--- MD5 | 14 +++++------ R/itsa.model.R | 53 ++++++++++++++++++++------------------------ R/itsa.postest.R | 25 ++++++++++++-------- R/package.description.R | 10 ++++---- man/its.analysis-package.Rd | 12 ++++----- man/itsa.model.Rd | 40 +++++++++++++++++++++------------ man/itsa.postest.Rd | 17 +++++++++----- 8 files changed, 99 insertions(+), 80 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data
analysis, drake rebuilds intermediate data objects when their
dependencies change, and it skips work when the results are already up
to date. Not every execution starts from scratch, there is native
support for parallel and distributed computing, and completed projects
have tangible evidence that they are reproducible. Extensive
documentation, from beginner-friendly tutorials to practical examples
and more, is available at the reference website
<https://docs.ropensci.org/drake/> and the online manual
<https://books.ropensci.org/drake/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Ellis Hughes [ctb],
Matthew Mark Strasiotto [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.12.7 dated 2020-10-27 and 7.13.0 dated 2021-01-04
drake-7.12.7/drake/tests/scenarios/tests-separate.Rout |only drake-7.13.0/drake/DESCRIPTION | 6 - drake-7.13.0/drake/MD5 | 31 ++++----- drake-7.13.0/drake/NEWS.md | 11 +++ drake-7.13.0/drake/R/drake_ggraph.R | 4 - drake-7.13.0/drake/R/transform_plan.R | 2 drake-7.13.0/drake/R/vis_drake_graph.R | 24 +++++-- drake-7.13.0/drake/man/figures/unnamed-chunk-13-1.png |binary drake-7.13.0/drake/man/figures/unnamed-chunk-18-1.png |binary drake-7.13.0/drake/man/figures/unnamed-chunk-9-1.png |binary drake-7.13.0/drake/man/render_drake_graph.Rd | 9 ++ drake-7.13.0/drake/man/vis_drake_graph.Rd | 7 ++ drake-7.13.0/drake/man/vis_drake_graph_impl.Rd | 3 drake-7.13.0/drake/tests/testthat/test-1-interactive.R | 58 ++++++++++++++++- drake-7.13.0/drake/tests/testthat/test-2-testing.R | 33 ++------- drake-7.13.0/drake/tests/testthat/test-7-recovery.R | 4 - drake-7.13.0/drake/tests/testthat/test-8-cache.R | 29 -------- 17 files changed, 137 insertions(+), 84 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-07 0.3.0
2017-06-15 0.2.0
2016-12-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-16 0.3.0
2018-06-18 0.2.0
2018-03-19 0.1.8
2017-10-17 0.1.2
2017-10-14 0.1.0
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Peter Rousseeuw [ctb] (Qn and Sn),
Christophe Croux [ctb] (Qn and Sn),
Valentin Todorov [aut] (most robust Cov),
Andreas Ruckstuhl [aut] (nlrob, anova, glmrob),
Matias Salibian-Barrera [aut] (lmrob orig.),
Tobias Verbeke [ctb, fnd] (mc, adjbox),
Manuel Koller [aut] (mc, lmrob, psi-func.),
Eduardo L. T. Conceicao [aut] (MM-, tau-, CM-, and MTL- nlrob),
Maria Anna di Palma [ctb] (initial version of Comedian)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.93-6 dated 2020-03-23 and 0.93-7 dated 2021-01-04
robustbase-0.93-6/robustbase/man/pkg-internal.Rd |only robustbase-0.93-6/robustbase/tests/lmrob-outlierStats.R |only robustbase-0.93-6/robustbase/tests/plot-ex.R |only robustbase-0.93-6/robustbase/vignettes/plot-fig-AdB2-1.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-Mscale-all.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-Mscale.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-cpr.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-efficiency-all.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-efficiency.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-emp-level.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-example-design.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-lqq-level.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-max-asymptotic-bias.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-meanscale.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-power-1-0_2.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-power-1-0_4.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-power-1-0_6.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-power-1-0_8.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-power-1-1.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-pred-points.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-psi-functions.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-qscale-all.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-qscale.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-sdAdB2-1.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-sdscale-1.pdf |only robustbase-0.93-6/robustbase/vignettes/plot-fig-sdscale-all.pdf |only robustbase-0.93-7/robustbase/DESCRIPTION | 12 robustbase-0.93-7/robustbase/MD5 | 159 ++++------ robustbase-0.93-7/robustbase/NAMESPACE | 4 robustbase-0.93-7/robustbase/R/OGK.R | 26 - robustbase-0.93-7/robustbase/R/adjbox.R | 12 robustbase-0.93-7/robustbase/R/adjoutlyingness.R | 86 ++++- robustbase-0.93-7/robustbase/R/classPC.R | 5 robustbase-0.93-7/robustbase/R/mc.R | 3 robustbase-0.93-7/robustbase/TODO | 4 robustbase-0.93-7/robustbase/build/partial.rdb |binary robustbase-0.93-7/robustbase/build/vignette.rds |binary robustbase-0.93-7/robustbase/inst/CITATION | 4 robustbase-0.93-7/robustbase/inst/NEWS.Rd | 36 ++ robustbase-0.93-7/robustbase/inst/doc/fastMcd-kmini.R | 1 robustbase-0.93-7/robustbase/inst/doc/fastMcd-kmini.pdf |binary robustbase-0.93-7/robustbase/inst/doc/lmrob_simulation.R | 6 robustbase-0.93-7/robustbase/inst/doc/lmrob_simulation.Rnw | 4 robustbase-0.93-7/robustbase/inst/doc/lmrob_simulation.pdf |binary robustbase-0.93-7/robustbase/inst/doc/psi_functions.R | 1 robustbase-0.93-7/robustbase/inst/doc/psi_functions.pdf |binary robustbase-0.93-7/robustbase/inst/xtraR/test_MCD.R | 2 robustbase-0.93-7/robustbase/man/Animals2.Rd | 4 robustbase-0.93-7/robustbase/man/BYlogreg.Rd | 2 robustbase-0.93-7/robustbase/man/M.psi.Rd | 2 robustbase-0.93-7/robustbase/man/adjOutlyingness.Rd | 40 +- robustbase-0.93-7/robustbase/man/adjbox.Rd | 7 robustbase-0.93-7/robustbase/man/adjboxStats.Rd | 2 robustbase-0.93-7/robustbase/man/alcohol.Rd | 2 robustbase-0.93-7/robustbase/man/anova.glmrob.Rd | 2 robustbase-0.93-7/robustbase/man/colMedians.Rd | 2 robustbase-0.93-7/robustbase/man/covComed.Rd | 2 robustbase-0.93-7/robustbase/man/covMcd.Rd | 3 robustbase-0.93-7/robustbase/man/foodstamp.Rd | 2 robustbase-0.93-7/robustbase/man/glmrob.Rd | 7 robustbase-0.93-7/robustbase/man/hbk.Rd | 2 robustbase-0.93-7/robustbase/man/heart.Rd | 2 robustbase-0.93-7/robustbase/man/huberM.Rd | 2 robustbase-0.93-7/robustbase/man/lmrob..M..fit.Rd | 2 robustbase-0.93-7/robustbase/man/lmrob.M.S.Rd | 2 robustbase-0.93-7/robustbase/man/lmrob.lar.Rd | 4 robustbase-0.93-7/robustbase/man/mc.Rd | 11 robustbase-0.93-7/robustbase/man/nlrob.Rd | 2 robustbase-0.93-7/robustbase/man/nlrob.control.Rd | 6 robustbase-0.93-7/robustbase/man/possumDiv.Rd | 2 robustbase-0.93-7/robustbase/man/r6pack.Rd | 2 robustbase-0.93-7/robustbase/man/radarImage.Rd | 2 robustbase-0.93-7/robustbase/man/rankMM.Rd | 2 robustbase-0.93-7/robustbase/man/robustbase-internal.Rd |only robustbase-0.93-7/robustbase/man/salinity.Rd | 2 robustbase-0.93-7/robustbase/man/scaleTau2.Rd | 10 robustbase-0.93-7/robustbase/man/sigma.Rd | 2 robustbase-0.93-7/robustbase/man/tolEllipsePlot.Rd | 2 robustbase-0.93-7/robustbase/man/toxicity.Rd | 2 robustbase-0.93-7/robustbase/man/wgt.himedian.Rd | 2 robustbase-0.93-7/robustbase/src/mc.c | 4 robustbase-0.93-7/robustbase/src/robustbase.h | 2 robustbase-0.93-7/robustbase/src/wgt_himed.c | 1 robustbase-0.93-7/robustbase/src/wgt_himed_templ.h | 30 + robustbase-0.93-7/robustbase/tests/LTS-specials.R | 1 robustbase-0.93-7/robustbase/tests/Qn-Sn-plots.R |only robustbase-0.93-7/robustbase/tests/large-values.R |only robustbase-0.93-7/robustbase/tests/lmrob-data.R | 30 + robustbase-0.93-7/robustbase/tests/lmrob-methods.R | 8 robustbase-0.93-7/robustbase/tests/lmrob-methods.Rout.save | 14 robustbase-0.93-7/robustbase/tests/mc-strict.R | 31 + robustbase-0.93-7/robustbase/tests/nlrob-tst.R | 6 robustbase-0.93-7/robustbase/tests/tmcd.R | 8 robustbase-0.93-7/robustbase/tests/wgt-himed.R | 3 robustbase-0.93-7/robustbase/vignettes/lmrob_simulation.Rnw | 4 95 files changed, 403 insertions(+), 242 deletions(-)
Title: R Interface to 'FACTS' on Unix-Like Systems
Description: The 'rfacts' package is an R interface to the
Fixed and Adaptive Clinical Trial Simulator ('FACTS')
on Unix-like systems. It programmatically invokes 'FACTS' to run clinical
trial simulations, and it aggregates simulation output data
into tidy data frames. These capabilities provide end-to-end
automation for large-scale simulation pipelines, and
they enhance computational reproducibility.
For more information on 'FACTS' itself,
please visit <https://www.berryconsultants.com/software/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between rfacts versions 0.0.2 dated 2020-10-14 and 0.1.0 dated 2021-01-04
DESCRIPTION | 15 - MD5 | 39 ++- NAMESPACE | 8 NEWS.md | 7 R/assert.R | 4 R/package.R | 5 R/read_facts.R |only R/utils.R | 9 R/write_facts.R |only README.md | 2 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/config.Rmd | 2 inst/doc/config.html | 409 +++++++++----------------------------- inst/doc/generate.R |only inst/doc/generate.Rmd |only inst/doc/generate.html |only inst/doc/te.html | 391 +++++++++--------------------------- man/read_facts.Rd |only man/write_facts.Rd |only tests/testthat/test-assert.R | 5 tests/testthat/test-read_facts.R |only tests/testthat/test-utils.R |only tests/testthat/test-write_facts.R |only vignettes/config.Rmd | 2 vignettes/generate.Rmd |only 26 files changed, 278 insertions(+), 621 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre] (<https://orcid.org/0000-0003-0410-7385>)
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.1.9 dated 2020-10-01 and 2.2.2 dated 2021-01-04
DESCRIPTION | 10 - MD5 | 36 +++--- NAMESPACE | 2 NEWS.md | 22 +++ R/fbGetBusinessManagersUsers.R |only R/fbGetMarketingStat.R | 160 ++++++++++++++++++++++++++--- R/fbParsers.R | 18 +++ R/zzz.R | 2 README.md | 8 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/rfacebookstat-authorization.Rmd | 2 inst/doc/rfacebookstat-authorization.html | 73 +++++++++++++ inst/doc/rfacebookstat-cost-data.html | 75 +++++++++++++ inst/doc/rfacebookstat-get-statistics.Rmd | 3 inst/doc/rfacebookstat-get-statistics.html | 78 +++++++++++++- man/fbGetBusinessManagersUsers.Rd |only man/fbGetMarketingStat.Rd | 16 +- vignettes/rfacebookstat-authorization.Rmd | 2 vignettes/rfacebookstat-get-statistics.Rmd | 3 20 files changed, 454 insertions(+), 56 deletions(-)
Title: Tools to Match Financial Portfolios with Climate Data
Description: These tools implement in R a fundamental part of
the software 'PACTA' (Paris Agreement Capital Transition Assessment),
which is a free tool that calculates the alignment between financial
portfolios and climate scenarios (<https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation impacts the climate. This package matches data from
financial portfolios to asset level data from market-intelligence
databases (e.g. power plant capacities, emission factors, etc.). This
is the first step to assess if a financial portfolio aligns with
climate goals.
Author: Mauro Lepore [aut, cre, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Jackson Hoffart [aut] (<https://orcid.org/0000-0002-8600-5042>),
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between r2dii.match versions 0.0.7 dated 2020-12-03 and 0.0.8 dated 2021-01-04
r2dii.match-0.0.7/r2dii.match/tests/testthat/_snaps/prioritize.md |only r2dii.match-0.0.8/r2dii.match/DESCRIPTION | 6 +++--- r2dii.match-0.0.8/r2dii.match/MD5 | 9 ++++----- r2dii.match-0.0.8/r2dii.match/NEWS.md | 4 ++++ r2dii.match-0.0.8/r2dii.match/README.md | 8 ++++---- r2dii.match-0.0.8/r2dii.match/tests/testthat/test-prioritize.R | 2 -- 6 files changed, 15 insertions(+), 14 deletions(-)
Title: Profile R Code and Visualize with 'Pprof'
Description: Like similar profiling tools,
the 'proffer' package automatically detects
sources of slowness in R code.
The distinguishing feature of 'proffer' is its utilization of
'pprof', which supplies interactive visualizations
that are efficient and easy to interpret.
Behind the scenes, the 'profile' package converts
native Rprof() data to a protocol buffer
that 'pprof' understands.
For the documentation of 'proffer',
visit <https://r-prof.github.io/proffer>.
To learn about the implementations and methodologies of
'pprof', 'profile', and protocol buffers,
visit <https://github.com/google/pprof>.
<https://developers.google.com/protocol-buffers>,
and <https://github.com/r-prof/profile>, respectively.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between proffer versions 0.1.0 dated 2020-03-22 and 0.1.1 dated 2021-01-04
DESCRIPTION | 13 +++++---- MD5 | 30 +++++++++++---------- NAMESPACE | 2 + NEWS.md | 8 +++++ R/package.R | 2 - R/pprof.R | 52 +++++++++++++++++++++++++++++--------- R/utils.R | 16 ++++++++++- inst/WORDLIST | 1 man/pprof.Rd | 2 - man/random_port.Rd |only man/serve_pprof.Rd | 2 - man/serve_rprof.Rd | 2 - man/test_pprof.Rd | 2 - tests/testthat/helper-functions.R |only tests/testthat/test-interactive.R | 8 ++--- tests/testthat/test-profile.R | 12 ++------ tests/testthat/test-utils.R | 13 +++++++++ 17 files changed, 115 insertions(+), 50 deletions(-)
Title: An R Wrapper for the 'OpenTripPlanner' REST API
Description: A wrapper for the 'OpenTripPlanner' <http://www.opentripplanner.org/>
REST API. Queries are submitted to the relevant 'OpenTripPlanner' API resource, the response
is parsed and useful R objects are returned.
Author: Marcus Young [aut, cre] (<https://orcid.org/0000-0003-4627-1116>)
Maintainer: Marcus Young <M.A.Young@soton.ac.uk>
Diff between otpr versions 0.4.2 dated 2020-10-01 and 0.5.0 dated 2021-01-04
otpr-0.4.2/otpr/R/otpr_get_isochrone.R |only otpr-0.5.0/otpr/DESCRIPTION | 9 otpr-0.5.0/otpr/LICENSE | 2 otpr-0.5.0/otpr/MD5 | 41 - otpr-0.5.0/otpr/NAMESPACE | 5 otpr-0.5.0/otpr/NEWS.md |only otpr-0.5.0/otpr/R/otp_check_params.R |only otpr-0.5.0/otpr/R/otp_create_surface.R |only otpr-0.5.0/otpr/R/otp_evaluate_surface.R |only otpr-0.5.0/otpr/R/otp_get_distance.R | 16 otpr-0.5.0/otpr/R/otp_get_isochrone.R |only otpr-0.5.0/otpr/R/otp_get_times.R | 466 +++++++------ otpr-0.5.0/otpr/R/utility_functions.R | 61 + otpr-0.5.0/otpr/README.md | 349 +++++++-- otpr-0.5.0/otpr/inst/CITATION | 9 otpr-0.5.0/otpr/man/figures/surface0.jpg |only otpr-0.5.0/otpr/man/figures/unnamed-chunk-9-1.png |binary otpr-0.5.0/otpr/man/otp_check_mode.Rd |only otpr-0.5.0/otpr/man/otp_check_params.Rd |only otpr-0.5.0/otpr/man/otp_create_surface.Rd |only otpr-0.5.0/otpr/man/otp_evaluate_surface.Rd |only otpr-0.5.0/otpr/man/otp_get_isochrone.Rd | 78 +- otpr-0.5.0/otpr/man/otp_get_times.Rd | 107 ++ otpr-0.5.0/otpr/tests/launch-otp.R | 11 otpr-0.5.0/otpr/tests/testthat/test-otp_create_surface.R |only otpr-0.5.0/otpr/tests/testthat/test-otp_evaluate_surface.R |only otpr-0.5.0/otpr/tests/testthat/test-otp_get_isochrone.R | 10 otpr-0.5.0/otpr/tests/testthat/test-otp_get_times.R | 223 +++++- 28 files changed, 977 insertions(+), 410 deletions(-)
Title: Bayesian and Classical Audit Sampling
Description: Implements the audit sampling workflow as discussed in Derks et al. (2019) <doi:10.31234/osf.io/9f6ub>. The package makes it easy for an auditor to plan an audit sample, sample from the population, and evaluating that sample using various confidence bounds according to the International Standards on Auditing. Furthermore, the package implements Bayesian equivalents of these methods.
Author: Koen Derks [aut, cre] (<https://orcid.org/0000-0002-5533-9349>)
Maintainer: Koen Derks <k.derks@nyenrode.nl>
Diff between jfa versions 0.4.0 dated 2020-10-30 and 0.5.0 dated 2021-01-04
jfa-0.4.0/jfa/R/sampling.R |only jfa-0.4.0/jfa/inst/doc/auditWorkflow.R |only jfa-0.4.0/jfa/inst/doc/auditWorkflow.Rmd |only jfa-0.4.0/jfa/inst/doc/auditWorkflow.html |only jfa-0.4.0/jfa/man/figures/logo |only jfa-0.4.0/jfa/man/sampling.Rd |only jfa-0.4.0/jfa/vignettes/auditWorkflow.Rmd |only jfa-0.5.0/jfa/DESCRIPTION | 16 jfa-0.5.0/jfa/MD5 | 113 +- jfa-0.5.0/jfa/NAMESPACE | 2 jfa-0.5.0/jfa/NEWS.md | 10 jfa-0.5.0/jfa/R/auditPrior.R | 29 jfa-0.5.0/jfa/R/evaluation.R | 56 - jfa-0.5.0/jfa/R/hidden.R | 40 jfa-0.5.0/jfa/R/internal.R | 15 jfa-0.5.0/jfa/R/methods.R | 118 +- jfa-0.5.0/jfa/R/planning.R | 5 jfa-0.5.0/jfa/R/report.R |only jfa-0.5.0/jfa/R/selection.R | 3 jfa-0.5.0/jfa/README.md | 429 ++++++--- jfa-0.5.0/jfa/build/vignette.rds |binary jfa-0.5.0/jfa/inst/CITATION |only jfa-0.5.0/jfa/inst/doc/jfa.R |only jfa-0.5.0/jfa/inst/doc/jfa.Rmd |only jfa-0.5.0/jfa/inst/doc/jfa.html |only jfa-0.5.0/jfa/inst/doc/v1auditWorkflow.R |only jfa-0.5.0/jfa/inst/doc/v1auditWorkflow.Rmd |only jfa-0.5.0/jfa/inst/doc/v1auditWorkflow.html |only jfa-0.5.0/jfa/inst/doc/v2priorDistributions.R |only jfa-0.5.0/jfa/inst/doc/v2priorDistributions.Rmd |only jfa-0.5.0/jfa/inst/doc/v2priorDistributions.html |only jfa-0.5.0/jfa/inst/doc/v3estimation.R |only jfa-0.5.0/jfa/inst/doc/v3estimation.Rmd |only jfa-0.5.0/jfa/inst/doc/v3estimation.html |only jfa-0.5.0/jfa/inst/doc/v4testing.R |only jfa-0.5.0/jfa/inst/doc/v4testing.Rmd |only jfa-0.5.0/jfa/inst/doc/v4testing.html |only jfa-0.5.0/jfa/inst/rmd |only jfa-0.5.0/jfa/man/auditPrior.Rd | 9 jfa-0.5.0/jfa/man/evaluation.Rd | 15 jfa-0.5.0/jfa/man/figures/cheatsheet |only jfa-0.5.0/jfa/man/figures/readme |only jfa-0.5.0/jfa/man/manual/jfa_0.5.0.pdf |only jfa-0.5.0/jfa/man/planning.Rd | 5 jfa-0.5.0/jfa/man/report.Rd |only jfa-0.5.0/jfa/man/selection.Rd | 5 jfa-0.5.0/jfa/tests/testthat/test-comparison-appendix-a.R | 12 jfa-0.5.0/jfa/tests/testthat/test-comparison-appendix-c.R | 3 jfa-0.5.0/jfa/tests/testthat/test-comparison-audit-sampler.R | 2 jfa-0.5.0/jfa/tests/testthat/test-function-auditPrior.R | 81 - jfa-0.5.0/jfa/tests/testthat/test-function-evaluation.R | 500 ++++++----- jfa-0.5.0/jfa/tests/testthat/test-function-planning.R | 106 +- jfa-0.5.0/jfa/tests/testthat/test-function-selection.R | 128 +- jfa-0.5.0/jfa/tests/testthat/test-function-workflow.R |only jfa-0.5.0/jfa/tests/testthat/test-other.R |only jfa-0.5.0/jfa/vignettes/jfa.Rmd |only jfa-0.5.0/jfa/vignettes/v1auditWorkflow.Rmd |only jfa-0.5.0/jfa/vignettes/v2priorDistributions.Rmd |only jfa-0.5.0/jfa/vignettes/v3estimation.Rmd |only jfa-0.5.0/jfa/vignettes/v4testing.Rmd |only 60 files changed, 1105 insertions(+), 597 deletions(-)
Title: Open Source Geometry Engine ('GEOS') R API
Description: Provides an R API to the Open Source Geometry Engine
('GEOS') library (<https://trac.osgeo.org/geos/>) and a vector format
with which to efficiently store 'GEOS' geometries. High-performance functions
to extract information from, calculate relationships between, and
transform geometries are provided. Finally, facilities to import
and export geometry vectors to other spatial formats are provided.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Edzer Pebesma [aut] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between geos versions 0.0.1 dated 2020-08-13 and 0.0.2 dated 2021-01-04
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NAMESPACE | 1 - NEWS.md | 4 ++++ R/wk-compat.R | 33 --------------------------------- R/zzz.R | 1 - README.md | 6 +++--- man/as_geos_geometry.Rd | 3 --- man/plot.geos_geometry.Rd | 2 +- tests/testthat/Rplots.pdf |binary tests/testthat/test-wk-compat.R | 3 --- 11 files changed, 21 insertions(+), 58 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX <https://sdmx.org>) Web Services
(<https://ec.europa.eu/eurostat/web/sdmx-web-services/about-this-service>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Mátyás Mészáros [aut, cre]
Maintainer: Mátyás Mészáros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.8.10 dated 2020-09-18 and 0.9.8 dated 2021-01-04
DESCRIPTION | 10 ++--- MD5 | 58 +++++++++++++++---------------- R/clean_restatapi_cache.R | 8 ++-- R/create_filter_table.R | 35 +++++++++---------- R/extract_data.R | 14 +++---- R/extract_dsd.R | 9 ++-- R/extract_toc.R | 4 +- R/filter_raw_data.R | 24 +++++++------ R/get_compressed_sdmx.R | 8 ++-- R/get_eurostat_bulk.R | 53 ++++++++++++++--------------- R/get_eurostat_cache.R | 8 ++-- R/get_eurostat_data.R | 36 +++++++++++++------ R/get_eurostat_raw.R | 59 +++++++++++++++++++------------- R/search_eurostat_dsd.R | 2 - R/search_eurostat_toc.R | 4 +- README.md | 78 +++++++++++++++++++++++++++++++------------ man/clean_restatapi_cache.Rd | 8 ++-- man/create_filter_table.Rd | 33 +++++++++--------- man/extract_data.Rd | 14 +++---- man/extract_dsd.Rd | 9 ++-- man/extract_toc.Rd | 4 +- man/filter_raw_data.Rd | 24 +++++++------ man/get_compressed_sdmx.Rd | 8 ++-- man/get_eurostat_bulk.Rd | 49 +++++++++++++-------------- man/get_eurostat_cache.Rd | 8 ++-- man/get_eurostat_data.Rd | 21 ++++++++--- man/get_eurostat_raw.Rd | 10 ++++- man/search_eurostat_dsd.Rd | 2 - man/search_eurostat_toc.Rd | 4 +- tests/testthat/test-all.R | 10 ++++- 30 files changed, 354 insertions(+), 260 deletions(-)
Title: Generalized Fiducial Inference for Low-Dimensional Robust Linear
Regression
Description: Fiducial framework for linear regression models allowing normal, Student, Cauchy, or logistic error terms. Only low-dimensional models are possible, such as the simple linear regression model, or the one-way ANOVA model with two factor levels. Reference: Hannig, Lai & Lee (2014) <doi:10.1016/j.csda.2013.03.003>.
Author: Stéphane Laurent
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between gfilinreg versions 1.0.0 dated 2020-12-04 and 2.0.0 dated 2021-01-04
DESCRIPTION | 14 - MD5 | 48 +++--- NAMESPACE | 13 - NEWS.md | 5 R/RcppExports.R | 16 +- R/gfilinreg.R | 112 ++++++++------ R/inference.R | 20 +- R/internal.R | 133 +++++----------- R/predictive.R | 2 data/FID.rda |binary data/MAXLHD.rda |binary inst/doc/the-gfilinreg-package.R | 28 +-- inst/doc/the-gfilinreg-package.Rmd | 43 ++--- inst/doc/the-gfilinreg-package.html | 129 +++++----------- man/gfiCDF.Rd | 8 - man/gfiConfInt.Rd | 4 man/gfiQuantile.Rd | 4 man/gfiSummary.Rd | 4 man/gfilinreg.Rd | 8 - man/gfilinregPredictive.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 76 +++++---- src/gfilinreg.cpp | 286 +++++++++++++++++++++++------------- vignettes/the-gfilinreg-package.Rmd | 43 ++--- 25 files changed, 539 insertions(+), 463 deletions(-)
Title: Automated Retrieval of ACLED Conflict Event Data
Description: Access and manage the application programming interface (API) of the Armed Conflict Location & Event Data Project (ACLED) at <https://acleddata.com/>. The package makes it easy to retrieve a user-defined sample (or all of the available data) of ACLED, enabling a seamless integration of regular data updates into the research work flow. See the package's README file for a note on replicability when drawing on ACLED data. When using this package, you acknowledge that you have read ACLED's terms and conditions of use, and that you agree with their attribution requirements.
Author: Christoph Dworschak [aut, cre]
(<https://orcid.org/0000-0003-0196-9545>)
Maintainer: Christoph Dworschak <c.dworschak@essex.ac.uk>
Diff between acled.api versions 1.0.8 dated 2020-10-27 and 1.0.9 dated 2021-01-04
DESCRIPTION | 10 +++--- MD5 | 13 ++++---- NEWS.md | 9 ++++- R/acled.api.R | 16 +++++----- R/acled.api.internal.R | 2 - README.md | 76 ++++++++++++++++++++++++++++++------------------- man/acled.api.Rd | 12 ++++--- man/figures |only 8 files changed, 84 insertions(+), 54 deletions(-)
Title: Radiation Safety
Description: Provides functions for radiation safety, also known as
"radiation protection" and "radiological control". The science of
radiation protection is called "health physics" and its engineering
functions are called "radiological engineering". Functions in this
package cover many of the computations needed by radiation safety
professionals. Examples include: obtaining updated calibration and
source check values for radiation monitors to account for radioactive
decay in a reference source, simulating instrument readings to better
understand measurement uncertainty, correcting instrument readings
for geometry and ambient atmospheric conditions. Many of these
functions are described in Johnson and Kirby (2011, ISBN-13:
978-1609134198). Utilities are also included for developing inputs
and processing outputs with radiation transport codes, such as MCNP,
a general-purpose Monte Carlo N-Particle code that can be used for
neutron, photon, electron, or coupled neutron/photon/electron transport
(Werner et. al. (2018) <doi:10.2172/1419730>).
Author: Mark Hogue <mark.hogue.chp@gmail.com>
Maintainer: Mark Hogue <mark.hogue.chp@gmail.com>
Diff between radsafer versions 2.2.3 dated 2020-09-09 and 2.2.4 dated 2021-01-04
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/mcnp_scan2plot.R | 2 +- R/mcnp_scan_save.R | 2 +- build/vignette.rds |binary inst/doc/Introduction_to_radsafer.html | 28 +++++++++++++++++++--------- 6 files changed, 31 insertions(+), 21 deletions(-)
Title: Integrated Stratigraphy
Description: Includes bases for litholog generation: graphical functions
based on R base graphics, interval management functions and svg importation
functions among others. Also include stereographic projection functions,
and other functions made to deal with large datasets while keeping options
to get into the details of the data.
When using for publication please cite Wouters, S., Da Silva, A.C. Crucifix,
M., Sinnesael, M., Zivanovic, M., Boulvain, F., Devleeschouwer, X., 2019,
Litholog generation with the StratigrapheR package and signal decomposition
for cyclostratigraphic purposes. Geophysical Research Abstracts Vol. 21,
EGU2019-5520, 2019, EGU General Assembly 2019.
<http://hdl.handle.net/2268/234402>
The palaeomagnetism functions are based on:
Tauxe, L., 2010. Essentials of Paleomagnetism. University of California
Press. <https://earthref.org/MagIC/books/Tauxe/Essentials/>;
Allmendinger, R. W., Cardozo, N. C., and Fisher, D., 2013, Structural
Geology Algorithms: Vectors & Tensors: Cambridge, England, Cambridge
University Press, 289 pp.;
Cardozo, N., and Allmendinger, R. W., 2013, Spherical projections
with OSXStereonet: Computers & Geosciences, v. 51, no. 0, p. 193 - 205,
<doi: 10.1016/j.cageo.2012.07.021>.
Author: Sebastien Wouters [aut, cre], Adam D. Smith [ctb]
Maintainer: Sebastien Wouters <sebastien.wouters@doct.uliege.be>
Diff between StratigrapheR versions 1.1.1 dated 2020-11-02 and 1.1.2 dated 2021-01-04
DESCRIPTION | 6 MD5 | 16 +- NEWS | 6 R/StratigrapheR.R | 12 - R/framesvg.R | 4 R/nlegend.R | 17 +- R/pointsvg.R | 391 ++++++++++++++++++++++++++++++++++----------------- man/StratigrapheR.Rd | 2 man/nlegend.Rd | 18 +- 9 files changed, 314 insertions(+), 158 deletions(-)
Title: Plackett-Luce Models for Rankings
Description: Functions to prepare rankings data and fit the Plackett-Luce model
jointly attributed to Plackett (1975) <doi:10.2307/2346567> and Luce
(1959, ISBN:0486441369). The standard Plackett-Luce model is generalized
to accommodate ties of any order in the ranking. Partial rankings, in which
only a subset of items are ranked in each ranking, are also accommodated in
the implementation. Disconnected/weakly connected networks implied by the
rankings may be handled by adding pseudo-rankings with a hypothetical item.
Optionally, a multivariate normal prior may be set on the log-worth
parameters and ranker reliabilities may be incorporated as proposed by
Raman and Joachims (2014) <doi:10.1145/2623330.2623654>. Maximum a
posteriori estimation is used when priors are set. Methods are provided to
estimate standard errors or quasi-standard errors for inference as well as
to fit Plackett-Luce trees. See the package website or vignette for further
details.
Author: Heather Turner [aut, cre] (<https://orcid.org/0000-0002-1256-3375>),
Ioannis Kosmidis [aut] (<https://orcid.org/0000-0003-1556-0302>),
David Firth [aut] (<https://orcid.org/0000-0003-0302-2312>),
Jacob van Etten [ctb] (<https://orcid.org/0000-0001-7554-2558>)
Maintainer: Heather Turner <ht@heatherturner.net>
Diff between PlackettLuce versions 0.3.1 dated 2020-10-13 and 0.3.2 dated 2021-01-04
DESCRIPTION | 6 MD5 | 15 NEWS.md | 379 +++++++++++----------- build/vignette.rds |binary inst/CITATION |only inst/doc/Overview.html | 80 ++++ tests/testthat/outputs/pltree_adherence_beans.rds |binary tests/testthat/test-psycho.R | 3 vignettes/render.R | 60 +-- 9 files changed, 308 insertions(+), 235 deletions(-)
Title: Reproducible Scripts via Version-Specific Package Loading
Description: Make R scripts that rely on packages reproducible, by ensuring that
every time a given script is run, the same version of the used packages are
loaded (instead of whichever version the user running the script happens to
have installed). This is achieved by using the new command
groundhog.library() instead of the base command library(), and including a
date in the call. The date is used to call on the same version of the
package every time (the most recent version available on CRAN at that date).
Author: Uri Simonsohn [aut, cre] (<https://orcid.org/0000-0002-8601-7211>),
Hugo Gruson [ctb, aut] (<https://orcid.org/0000-0002-4094-1476>)
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between groundhog versions 1.0.0 dated 2020-10-30 and 1.1.0 dated 2021-01-04
groundhog-1.0.0/groundhog/build |only groundhog-1.0.0/groundhog/inst/doc |only groundhog-1.0.0/groundhog/tests |only groundhog-1.0.0/groundhog/vignettes |only groundhog-1.1.0/groundhog/DESCRIPTION | 21 groundhog-1.1.0/groundhog/MD5 | 115 +- groundhog-1.1.0/groundhog/NAMESPACE | 37 groundhog-1.1.0/groundhog/R/check.mismatch.R.R | 136 +-- groundhog-1.1.0/groundhog/R/check.snowball.conflict.R | 169 ++- groundhog-1.1.0/groundhog/R/cross.toc.R | 72 - groundhog-1.1.0/groundhog/R/estimate.seconds.left.R | 88 +- groundhog-1.1.0/groundhog/R/get.R.pkg.date.R | 246 ++--- groundhog-1.1.0/groundhog/R/get.active.R | 68 - groundhog-1.1.0/groundhog/R/get.current.packages.R | 57 - groundhog-1.1.0/groundhog/R/get.date.for.install.binary.R | 135 ++- groundhog-1.1.0/groundhog/R/get.dependencies.R | 238 ++--- groundhog-1.1.0/groundhog/R/get.groundhog.folder.R | 229 ++--- groundhog-1.1.0/groundhog/R/get.installation.time.R | 56 - groundhog-1.1.0/groundhog/R/get.installed_path.R | 52 - groundhog-1.1.0/groundhog/R/get.pkg_search_paths.R | 58 - groundhog-1.1.0/groundhog/R/get.snowball.R | 223 ++--- groundhog-1.1.0/groundhog/R/get.version.R | 125 +- groundhog-1.1.0/groundhog/R/groundhog.library.R | 341 +++++-- groundhog-1.1.0/groundhog/R/install.snowball.R | 556 ++++++++----- groundhog-1.1.0/groundhog/R/install.source.R | 176 ++-- groundhog-1.1.0/groundhog/R/installation.feedback.R | 131 +-- groundhog-1.1.0/groundhog/R/load.cran.toc.R | 169 +-- groundhog-1.1.0/groundhog/R/msg.R.switch.R | 44 - groundhog-1.1.0/groundhog/R/r.version.check.R | 95 +- groundhog-1.1.0/groundhog/R/researchbox_functions.R |only groundhog-1.1.0/groundhog/R/toc.R | 92 +- groundhog-1.1.0/groundhog/R/update_cran.toc_if.needed.R | 137 +-- groundhog-1.1.0/groundhog/R/utils.R | 334 ++++--- groundhog-1.1.0/groundhog/R/zzz.R | 118 ++ groundhog-1.1.0/groundhog/README.md | 141 +-- groundhog-1.1.0/groundhog/inst/cran.times.rds |binary groundhog-1.1.0/groundhog/inst/cran.toc.rds |binary groundhog-1.1.0/groundhog/inst/missing.mran.dates.rds |binary groundhog-1.1.0/groundhog/man/as.DateYMD.Rd | 28 groundhog-1.1.0/groundhog/man/check.mismatch.R.Rd | 37 groundhog-1.1.0/groundhog/man/check.snowball.conflict.Rd | 42 groundhog-1.1.0/groundhog/man/cross.toc.Rd | 4 groundhog-1.1.0/groundhog/man/get.active.Rd | 38 groundhog-1.1.0/groundhog/man/get.groundhog.folder.Rd | 5 groundhog-1.1.0/groundhog/man/get.snowball.Rd | 56 - groundhog-1.1.0/groundhog/man/get.version.Rd | 64 - groundhog-1.1.0/groundhog/man/groundhog.library.Rd | 112 +- groundhog-1.1.0/groundhog/man/install.snowball.Rd | 84 - groundhog-1.1.0/groundhog/man/installation.feedback.Rd | 45 - groundhog-1.1.0/groundhog/man/is.pkg_vrs.installed.Rd | 32 groundhog-1.1.0/groundhog/man/msg.R.switch.Rd | 43 - groundhog-1.1.0/groundhog/man/r.version.check.Rd | 61 - groundhog-1.1.0/groundhog/man/researchbox.Rd |only groundhog-1.1.0/groundhog/man/set.groundhog.folder.Rd | 67 - groundhog-1.1.0/groundhog/man/toc.Rd | 3 groundhog-1.1.0/groundhog/man/update_cran.toc_if.needed.Rd | 2 56 files changed, 2804 insertions(+), 2378 deletions(-)
Title: Summary Statistics for Geospatial Features
Description: Provides summary statistics of local geospatial features within a given geographic area.
It does so by calculating the area covered by a target geospatial feature (i.e. buildings, parks, lakes, etc.).
The geospatial features can be of any type of geospatial data, including point, polygon or line data.
Author: Nikos Patias [aut, cre] (<https://orcid.org/0000-0002-6542-2330>),
Francisco Rowe [aut]
Maintainer: Nikos Patias <n.patias@liverpool.ac.uk>
Diff between extRatum versions 1.0.0 dated 2020-12-18 and 1.0.1 dated 2021-01-04
extRatum-1.0.0/extRatum/README.md |only extRatum-1.0.1/extRatum/DESCRIPTION | 6 extRatum-1.0.1/extRatum/MD5 | 15 - extRatum-1.0.1/extRatum/R/areal_calc.R | 203 ++++++++--------- extRatum-1.0.1/extRatum/R/line_calc.R | 193 ++++++++-------- extRatum-1.0.1/extRatum/R/point_calc.R | 349 ++++++++++++++---------------- extRatum-1.0.1/extRatum/man/areal_calc.Rd | 15 - extRatum-1.0.1/extRatum/man/line_calc.Rd | 5 extRatum-1.0.1/extRatum/man/point_calc.Rd | 13 - 9 files changed, 388 insertions(+), 411 deletions(-)
Title: Wrapper for 'tapkee' Dimension Reduction Library
Description: Wrapper for using 'tapkee' command line utility,
it allows to run it from inside R and catch the results for further analysis and plotting.
'Tapkee' is a program for fast dimension reduction, see 'package?tapkee' and <http://tapkee.lisitsyn.me/>
for installation and other details.
Author: Alexey Shipunov
Maintainer: Alexey Shipunov <dactylorhiza@gmail.com>
Diff between tapkee versions 1.1 dated 2019-09-18 and 1.2 dated 2021-01-04
DESCRIPTION | 8 +-- MD5 | 16 +++---- NEWS | 10 +++- TODO | 5 +- build/vignette.rds |binary inst/doc/tapkee_methods.pdf |binary man/Gen.dr.data.Rd | 55 ++++++++++++++++++++----- man/Tapkee.Rd | 37 +++++++++-------- man/tapkee-package.Rd | 95 ++++++++++++++++++++++++++++++++------------ 9 files changed, 159 insertions(+), 67 deletions(-)
Title: Miscellaneous Functions from Alexey Shipunov
Description: A collection of functions for data manipulation, plotting and statistical computing,
to use separately or with the book "Visual Statistics. Use R!":
Shipunov (2020) <http://ashipunov.info/shipunov/software/r/r-en.htm>.
Most useful functions:
Bclust(), Jclust() and BootA() which bootstrap hierarchical clustering;
Recode() which does multiple recoding in a fast, simple and flexible way;
Misclass() which outputs confusion matrix even if classes are not concerted;
Overlap() which measures group separation on any projection;
Biarrows() which converts any scatterplot into biplot;
and Pleiad() which is fast and flexible correlogram.
Author: Alexey Shipunov [aut, cre], Paul Murrell [ctb], Marcello D'Orazio [ctb], Stephen Turner [ctb], Eugeny Altshuler [ctb], Roland Rau [ctb], Marcus W Beck [ctb], Sebastian Gibb [ctb], Weiliang Qiu [ctb], Emmanuel Paradis [ctb], Roger Koenker [ctb], R Core Team [ctb]
Maintainer: Alexey Shipunov <dactylorhiza@gmail.com>
Diff between shipunov versions 1.12 dated 2020-10-19 and 1.13 dated 2021-01-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 8 ++++++-- TODO | 9 +++++++++ man/Dotcharts.Rd | 10 +++++----- man/Life.Rd | 4 +++- man/Minus.names.Rd | 2 +- 7 files changed, 34 insertions(+), 19 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.6.1 dated 2020-10-30 and 1.6.2 dated 2021-01-04
DESCRIPTION | 10 ++--- MD5 | 36 ++++++++++---------- NEWS.md | 10 ++++- R/kraje.R | 6 +-- R/obce_body.R | 4 +- R/obce_polygony.R | 4 +- R/okresy.R | 6 +-- R/orp_polygony.R | 4 +- R/silnice.R | 2 - R/sysdata.rda |binary README.md | 6 +-- inst/doc/vignette.html | 56 +++++--------------------------- man/kraje.Rd | 4 +- man/obce_body.Rd | 2 - man/obce_polygony.Rd | 2 - man/okresy.Rd | 4 +- man/orp_polygony.Rd | 2 - man/silnice.Rd | 2 - tests/testthat/test-1-data-structures.R | 29 ++++++++++++++++ 19 files changed, 91 insertions(+), 98 deletions(-)
Title: Mixture Autoregressive Models
Description: Model time series using mixture autoregressive (MAR)
models. Implemented are frequentist (EM) and Bayesian
methods for estimation, prediction and model
evaluation. See Wong and Li (2002)
<doi:10.1111/1467-9868.00222>, Boshnakov (2009)
<doi:10.1016/j.spl.2009.04.009>), and the extensive
references in the documentation.
Author: Georgi N. Boshnakov [aut, cre],
Davide Ravagli [aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between mixAR versions 0.22.4 dated 2020-06-29 and 0.22.5 dated 2021-01-04
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 6 ++++++ build/partial.rdb |binary man/MixARGaussian-class.Rd | 3 +++ tests/testthat/test-exampleModels.R | 8 +++++--- 6 files changed, 24 insertions(+), 13 deletions(-)
Title: 'sf'-Based Interface to the 'HERE' REST APIs
Description: Interface to the 'HERE' REST APIs <https://developer.here.com/develop/rest-apis>:
(1) geocode and autosuggest addresses or reverse geocode POIs using the 'Geocoder' API;
(2) route directions, travel distance or time matrices and isolines using the 'Routing', 'Matrix Routing' and 'Isoline Routing' APIs;
(3) request real-time traffic flow and incident information from the 'Traffic' API;
(4) find request public transport connections and nearby stations from the 'Public Transit' API;
(5) request intermodal routes using the 'Intermodal Routing' API;
(6) get weather forecasts, reports on current weather conditions, astronomical
information and alerts at a specific location from the 'Destination Weather' API.
Locations, routes and isolines are returned as 'sf' objects.
Author: Merlin Unterfinger [aut, cre] (<https://orcid.org/0000-0003-2020-2366>),
Daniel Possenriede [ctb] (<https://orcid.org/0000-0002-6738-9845>)
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Diff between hereR versions 0.5.2 dated 2020-11-26 and 0.6.0 dated 2021-01-04
DESCRIPTION | 10 - MD5 | 112 ++++++------ NEWS.md | 19 +- R/autosuggest.R | 2 R/checks.R | 88 ++------- R/connection.R | 6 R/geocode.R | 22 +- R/intermodal_route.R | 16 - R/isoline.R | 233 +++++++++++++++++-------- R/reverse_geocode.R | 2 R/route.R | 257 +++++++++++++++++----------- R/route_matrix.R | 283 +++++++++++++++++++------------ R/sysdata.rda |binary R/utils.R | 82 ++++----- R/weather.R | 4 README.md | 57 +++++- build/vignette.rds |binary inst/doc/authentication.Rmd | 9 - inst/doc/authentication.html | 9 - inst/doc/geocoder.R | 44 ++-- inst/doc/geocoder.Rmd | 69 ++++--- inst/doc/geocoder.html | 79 ++++---- inst/doc/intermodal.R | 29 +-- inst/doc/intermodal.Rmd | 31 ++- inst/doc/intermodal.html | 80 ++++---- inst/doc/routing.R | 52 +++-- inst/doc/routing.Rmd | 80 +++++--- inst/doc/routing.html | 332 +++++++++++++++++++++++-------------- inst/doc/traffic.R | 45 ++--- inst/doc/traffic.Rmd | 49 +++-- inst/doc/traffic.html | 36 ++-- inst/doc/transit.R | 51 +++-- inst/doc/transit.Rmd | 63 ++++--- inst/doc/transit.html | 122 +++++++------ inst/doc/weather.R | 125 +++++++------ inst/doc/weather.Rmd | 140 +++++++++------ inst/doc/weather.html | 278 +++++++++++++++--------------- man/autosuggest.Rd | 2 man/connection.Rd | 2 man/geocode.Rd | 10 - man/hereR-package.Rd | 2 man/isoline.Rd | 33 ++- man/reverse_geocode.Rd | 2 man/route.Rd | 44 ++-- man/route_matrix.Rd | 33 +-- tests/testthat/test-autosuggest.R | 4 tests/testthat/test-geocode.R | 13 - tests/testthat/test-isoline.R | 8 tests/testthat/test-route.R | 9 - tests/testthat/test-route_matrix.R | 12 - vignettes/authentication.Rmd | 9 - vignettes/geocoder.Rmd | 69 ++++--- vignettes/intermodal.Rmd | 31 ++- vignettes/routing.Rmd | 80 +++++--- vignettes/traffic.Rmd | 49 +++-- vignettes/transit.Rmd | 63 ++++--- vignettes/weather.Rmd | 140 +++++++++------ 57 files changed, 2041 insertions(+), 1490 deletions(-)
Title: Flexible Polyline Encoding
Description: Binding to the C++ implementation of the flexible polyline
encoding by HERE <https://github.com/heremaps/flexible-polyline>. The
flexible polyline encoding is a lossy compressed representation of a list of
coordinate pairs or coordinate triples. The encoding is achieved by:
(1) Reducing the decimal digits of each value;
(2) encoding only the offset from the previous point;
(3) using variable length for each coordinate delta; and
(4) using 64 URL-safe characters to display the result.
Author: Merlin Unterfinger [aut, cre] (<https://orcid.org/0000-0003-2020-2366>),
HERE Europe B.V. [aut, cph] (Flexible polyline encoding C++
implementation)
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Diff between flexpolyline versions 0.2.0 dated 2020-12-17 and 0.2.1 dated 2021-01-04
DESCRIPTION | 6 +-- MD5 | 14 ++++---- NEWS.md | 5 ++ README.md | 8 ++++ inst/doc/cpp-binding.html | 4 +- inst/doc/flexpolyline.html | 4 +- inst/doc/sf-support.html | 66 +++++++++++++++++++------------------- tests/testthat/test-cpp_binding.R | 17 +++++---- 8 files changed, 68 insertions(+), 56 deletions(-)
Title: Fisher's z-Tests Concerning Difference of Correlations
Description: Computations of Fisher's z-tests concerning differences between correlations. diffcor.one() could be used to test for differences regarding an expected value, e.g., in construct validation. diffcor.two() may be useful in replication studies, to test if the original study and the replication study differed in terms of effects. diffcor.dep() can be applied to check if the correlation between one construct with another one (r12) is significantly different/higher/smaller than the correlation of one of the constructs with a third construct (r13), given the correlation of the constructs that are compared (r23). The outputs for all the three functions provide the test statistic in z-units, p-values, and alpha levels that were corrected in terms of multiple testing according to Bonferroni. To help interpret the output, the procedure prompts if a single p value is smaller than the corrected alpha. For diffcor.one() and diffcor.two(), the effect size Cohens q is additionally provided. It is a descriptive index to evaluate differences of independent correlations. According to Cohen (1988), q = |.10|, |.30| and |.50| are considered small, moderate, and large differences, respectively.
Author: Christian Blötner
Maintainer: Christian Blötner <c.bloetner@gmail.com>
Diff between diffcor versions 0.6.2 dated 2020-10-16 and 0.6.3 dated 2021-01-04
DESCRIPTION | 10 ++++---- MD5 | 6 ++--- R/source_code_diffcor.R | 57 ++++++++++++++++++++++-------------------------- man/diffcor.Rd | 14 +++++------ 4 files changed, 42 insertions(+), 45 deletions(-)
Title: Find Arbitrage Opportunities for Sports Matches
Description: Money doesn't grow on trees. Arbitrage opportunities do.
Find the best arbitrage opportunities (arbs) in sports matches through
<https://www.oddschecker.com/>. This package allows the user to input
the URLs of <https://www.oddschecker.com/> subdomains in order to extract
any opportunities for arbitrage. The majority of the functionality is
implemented using the function `get_arbs_shiny()`, which simply provides an
easy-to-use interface wrapping the functionality of the `get_arbs()` function.
This function first finds all subdomains of the URL entered, then filters to
only include those that look like event betting pages. Next, odds are scraped
from the various bookmakers listed for that event, before returning
combinations of bookmakers, odds or outcomes that could be used for arbitrage.
Bets placed subsequently are done so at bettor's risk. Please see
package README for full details.
Author: Andrew Little [aut, cre]
Maintainer: Andrew Little <andrewlittlebristol@gmail.com>
Diff between aRbs versions 0.0.1 dated 2020-11-24 and 0.1.0 dated 2021-01-04
aRbs-0.0.1/aRbs/R/remove_form.R |only aRbs-0.0.1/aRbs/man/get_arbs.Rd |only aRbs-0.0.1/aRbs/man/remove_form.Rd |only aRbs-0.1.0/aRbs/DESCRIPTION | 27 ++--- aRbs-0.1.0/aRbs/MD5 | 34 +++---- aRbs-0.1.0/aRbs/NAMESPACE | 3 aRbs-0.1.0/aRbs/NEWS.md | 14 ++ aRbs-0.1.0/aRbs/R/get_arb_single.R | 109 +++++++--------------- aRbs-0.1.0/aRbs/R/get_arbs.R | 155 ++++++++++++++------------------ aRbs-0.1.0/aRbs/R/get_arbs_shiny.R |only aRbs-0.1.0/aRbs/R/implied_probability.R | 21 +++- aRbs-0.1.0/aRbs/R/oddschecker2.R | 106 ++++++++++++++------- aRbs-0.1.0/aRbs/R/print.arb.R | 8 - aRbs-0.1.0/aRbs/R/scrape_links.R | 2 aRbs-0.1.0/aRbs/R/test_get_arbs.R |only aRbs-0.1.0/aRbs/README.md |only aRbs-0.1.0/aRbs/inst |only aRbs-0.1.0/aRbs/man/get_arb_single.Rd | 68 +++++++------- aRbs-0.1.0/aRbs/man/get_arbs_shiny.Rd |only aRbs-0.1.0/aRbs/man/oddschecker2.Rd | 37 ++++--- aRbs-0.1.0/aRbs/man/print.arb.Rd | 42 ++++---- aRbs-0.1.0/aRbs/man/scrape_links.Rd | 48 ++++----- 22 files changed, 350 insertions(+), 324 deletions(-)
Title: Downloading Time Series from ALFRED Database for Various
Vintages
Description: Provides direct access to the ALFRED (<https://alfred.stlouisfed.org>) and FRED (<https://fred.stlouisfed.org>) databases.
Its functions return tidy data frames for different releases of the specified time series.
Note that this product uses the FRED© API but is not endorsed or certified by the Federal Reserve Bank of St. Louis.
Author: Onno Kleen [aut, cre] (<https://orcid.org/0000-0003-4731-4640>)
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between alfred versions 0.1.8 dated 2020-09-11 and 0.1.9 dated 2021-01-04
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- NEWS.md | 1 + R/get_alfred_series.R | 18 +++++++++--------- inst/doc/alfred.html | 6 +++--- 5 files changed, 22 insertions(+), 20 deletions(-)