Title: Analyze Shot Group Data
Description: Analyzes shooting data with respect to group shape,
precision, and accuracy. This includes graphical methods,
descriptive statistics, and inference tests using standard,
but also non-parametric and robust statistical methods.
Implements distributions for radial error in bivariate normal
variables. Works with files exported by 'OnTarget PC/TDS',
'Silver Mountain' e-target, 'ShotMarker' e-target, or 'Taran',
as well as with custom data files in text format.
Supports inference from range statistics like extreme spread.
Includes a set of web-based graphical user interfaces.
Author: Daniel Wollschlaeger
Maintainer: Daniel Wollschlaeger <dwoll@kuci.org>
Diff between shotGroups versions 0.7.5.2 dated 2020-11-27 and 0.8 dated 2021-01-19
shotGroups-0.7.5.2/shotGroups/inst/shotGroups_AnalyzeGroups/helper.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_AnalyzeGroups/server.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_AnalyzeGroups/ui.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_AngularSize/helper.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_AngularSize/server.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_AngularSize/ui.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_HitProb/helper.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_HitProb/server.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_HitProb/ui.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_RangeStat/helper.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_RangeStat/server.R |only shotGroups-0.7.5.2/shotGroups/inst/shotGroups_RangeStat/ui.R |only shotGroups-0.8/shotGroups/DESCRIPTION | 11 shotGroups-0.8/shotGroups/MD5 | 136 +++++++--- shotGroups-0.8/shotGroups/R/getMinBBox.R | 15 + shotGroups-0.8/shotGroups/R/getMinCircle.R | 46 +++ shotGroups-0.8/shotGroups/R/hoyt.R | 2 shotGroups-0.8/shotGroups/R/maxwell.R | 2 shotGroups-0.8/shotGroups/R/rayleigh.R | 4 shotGroups-0.8/shotGroups/R/readData.R | 4 shotGroups-0.8/shotGroups/R/readDataSM.R | 3 shotGroups-0.8/shotGroups/R/rice.R | 2 shotGroups-0.8/shotGroups/R/runGUI.R | 31 +- shotGroups-0.8/shotGroups/inst/ChangeLog | 29 +- shotGroups-0.8/shotGroups/inst/doc/shotGroups.Rnw | 4 shotGroups-0.8/shotGroups/inst/doc/shotGroups.pdf |binary shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app_ui_sidebar.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app_ui_tab_about.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app_ui_tab_data.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app_ui_tab_group_accuracy.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app_ui_tab_group_compare.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app_ui_tab_group_precision.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app_ui_tab_group_shape.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/app_ui_tab_target_plot.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups/global.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups_bs4Dash_05 |only shotGroups-0.8/shotGroups/inst/shotGroups_AnalyzeGroups_legacy |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize/app.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize/app_ui_sidebar.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize/app_ui_tab_about.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize/app_ui_tab_absolute.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize/app_ui_tab_angular.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize/app_ui_tab_distance.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize/app_ui_tab_math.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize/global.R |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize_bs4Dash_05 |only shotGroups-0.8/shotGroups/inst/shotGroups_AngularSize_legacy |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb/app.R |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb/app_ui_sidebar.R |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb/app_ui_tab_about.R |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb/app_ui_tab_data.R |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb/app_ui_tab_hit_probability.R |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb/app_ui_tab_radius.R |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb/global.R |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb_bs4Dash_05 |only shotGroups-0.8/shotGroups/inst/shotGroups_HitProb_legacy |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat/app.R |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat/app_ui_sidebar.R |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat/app_ui_tab_about.R |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat/app_ui_tab_ci_width.R |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat/app_ui_tab_n_groups.R |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat/app_ui_tab_sigma.R |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat/global.R |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat_bs4Dash_05 |only shotGroups-0.8/shotGroups/inst/shotGroups_RangeStat_legacy |only shotGroups-0.8/shotGroups/man/getHoytParam.Rd | 2 shotGroups-0.8/shotGroups/man/getRiceParam.Rd | 2 shotGroups-0.8/shotGroups/man/hoyt.Rd | 2 shotGroups-0.8/shotGroups/man/maxwell.Rd | 2 shotGroups-0.8/shotGroups/man/rayleigh.Rd | 2 shotGroups-0.8/shotGroups/man/rice.Rd | 2 shotGroups-0.8/shotGroups/man/shotGroups-package.Rd | 6 shotGroups-0.8/shotGroups/vignettes/lit.bib | 93 +++--- shotGroups-0.8/shotGroups/vignettes/shotGroups.Rnw | 4 75 files changed, 277 insertions(+), 127 deletions(-)
Title: Voronoi Diagrams and Heatmaps with 'ggplot2'
Description: Easy creation and manipulation of Voronoi diagrams using 'deldir' with visualization in 'ggplot2'.
Author: Robert C. Garrett [aut, cre],
Austin Nar [aut],
Thomas J. Fisher [aut],
Karsten Maurer [ctb]
Maintainer: Robert C. Garrett <garretrc@miamioh.edu>
Diff between ggvoronoi versions 0.8.3 dated 2019-02-19 and 0.8.4 dated 2021-01-19
ggvoronoi-0.8.3/ggvoronoi/README.md |only ggvoronoi-0.8.4/ggvoronoi/DESCRIPTION | 12 ggvoronoi-0.8.4/ggvoronoi/LICENSE | 2 ggvoronoi-0.8.4/ggvoronoi/MD5 | 49 ggvoronoi-0.8.4/ggvoronoi/R/voronoi_polygon.R | 2 ggvoronoi-0.8.4/ggvoronoi/build/vignette.rds |binary ggvoronoi-0.8.4/ggvoronoi/inst/doc/ggvoronoi.R | 37 ggvoronoi-0.8.4/ggvoronoi/inst/doc/ggvoronoi.Rmd | 1 ggvoronoi-0.8.4/ggvoronoi/inst/doc/ggvoronoi.html | 580 +++++++--- ggvoronoi-0.8.4/ggvoronoi/man/fortify_voronoi.Rd | 2 ggvoronoi-0.8.4/ggvoronoi/man/geom_voronoi.Rd | 31 ggvoronoi-0.8.4/ggvoronoi/man/ncdc_locations.Rd | 6 ggvoronoi-0.8.4/ggvoronoi/man/oxford_bikes.Rd | 6 ggvoronoi-0.8.4/ggvoronoi/man/oxford_map.Rd | 4 ggvoronoi-0.8.4/ggvoronoi/man/stat_voronoi.Rd | 31 ggvoronoi-0.8.4/ggvoronoi/man/voronoi_polygon.Rd | 5 ggvoronoi-0.8.4/ggvoronoi/tests/figs/border-with-blank-diagram.svg | 64 - ggvoronoi-0.8.4/ggvoronoi/tests/figs/border-with-continuous-fill.svg | 88 - ggvoronoi-0.8.4/ggvoronoi/tests/figs/border-with-discrete-fill.svg | 122 +- ggvoronoi-0.8.4/ggvoronoi/tests/figs/deps.txt | 2 ggvoronoi-0.8.4/ggvoronoi/tests/figs/heatmap-with-continuous-fill.svg | 90 - ggvoronoi-0.8.4/ggvoronoi/tests/figs/heatmap-with-discrete-fill.svg | 84 - ggvoronoi-0.8.4/ggvoronoi/tests/testthat/test_aes_continuous.R | 8 ggvoronoi-0.8.4/ggvoronoi/tests/testthat/test_aes_discrete.R | 8 ggvoronoi-0.8.4/ggvoronoi/tests/testthat/test_outline.R | 11 ggvoronoi-0.8.4/ggvoronoi/vignettes/ggvoronoi.Rmd | 1 26 files changed, 780 insertions(+), 466 deletions(-)
Title: Automatic Structural Time Series Models
Description: Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components using the Kalman filter.
See Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models <doi:10.1093/oxfordhb/9780195398649.013.0006>.
Author: Alex Hubbard
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between autostsm versions 1.0 dated 2021-01-15 and 1.1 dated 2021-01-19
DESCRIPTION | 10 +++---- MD5 | 34 ++++++++++++------------ R/stsm_build_dates.R | 8 +++++ R/stsm_detect_cycle.R | 9 ++++++ R/stsm_detect_frequency.R | 15 ++++++++-- R/stsm_detect_multiplicative.R | 15 +++++----- R/stsm_detect_seasonality.R | 55 ++++++++++++++++++++++++++-------------- R/stsm_detect_trend.R | 14 +++------- R/stsm_estimate.R | 45 +++++++++++++++++++++++++------- R/stsm_forecast.R | 5 ++- R/stsm_prior.R | 5 ++- inst/doc/autostsm_vignette.R | 4 +- inst/doc/autostsm_vignette.Rmd | 28 ++++++++++---------- inst/doc/autostsm_vignette.html | 29 ++++++++++----------- man/stsm_detect_seasonality.Rd | 13 ++++++++- man/stsm_detect_trend.Rd | 2 - man/stsm_estimate.Rd | 10 +++++-- vignettes/autostsm_vignette.Rmd | 28 ++++++++++---------- 18 files changed, 211 insertions(+), 118 deletions(-)
Title: Learn Computer and Data Science using Algorithmic Trading
Description: Provide sets of functions and methods to learn and practice data science using idea of algorithmic trading.
Main goal is to process information within "Decision Support System" to come up with analysis or predictions.
There are several utilities such as dynamic and adaptive risk management using reinforcement learning
and even functions to generate predictions of price changes using pattern recognition deep regression learning.
Summary of Methods used: Awesome H2O tutorials: <https://github.com/h2oai/awesome-h2o>,
Market Type research of Van Tharp Institute: <https://www.vantharp.com/>,
Reinforcement Learning R package: <https://CRAN.R-project.org/package=ReinforcementLearning>.
Author: Vladimir Zhbanko
Maintainer: Vladimir Zhbanko <vladimir.zhbanko@gmail.com>
Diff between lazytrade versions 0.4.3 dated 2020-12-16 and 0.4.4 dated 2021-01-19
DESCRIPTION | 8 ++-- MD5 | 56 ++++++++++++++++++---------------- NAMESPACE | 3 + NEWS.md | 10 ++++++ R/aml_collect_data.R | 24 +++----------- R/check_if_optimize.R | 11 ++++++ R/dlog.R |only R/import_data.R | 4 +- R/mt_make_model.R | 47 +++++++++++++++++----------- R/mt_stat_evaluate.R |only R/mt_stat_transf.R |only R/rl_generate_policy.R | 4 +- R/rl_log_progress.R | 15 +++++---- R/rl_log_progress_mt.R | 19 +++++++---- R/rl_record_policy.R | 2 + R/rl_write_control_parameters.R | 39 ++++++++++++----------- R/rl_write_control_parameters_mt.R | 33 ++++++++++---------- R/test_model.R | 1 README.md | 6 ++- data/price_dataset_big.rda |binary man/aml_collect_data.Rd | 13 ++++++- man/check_if_optimize.Rd | 2 - man/dlog.Rd |only man/mt_make_model.Rd | 28 +++++++++++++++-- man/mt_stat_evaluate.Rd |only man/mt_stat_transf.Rd |only man/rl_generate_policy.Rd | 2 - man/rl_log_progress.Rd | 6 ++- man/rl_log_progress_mt.Rd | 12 +++++-- man/rl_record_policy.Rd | 3 + man/rl_write_control_parameters.Rd | 15 +++++++-- man/rl_write_control_parameters_mt.Rd | 16 +++++++-- 32 files changed, 244 insertions(+), 135 deletions(-)
Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a model without having to remember the different argument names across different functions or computational engines (e.g. 'R', 'Spark', 'Stan', etc).
Author: Max Kuhn [aut, cre],
Davis Vaughan [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between parsnip versions 0.1.4 dated 2020-10-27 and 0.1.5 dated 2021-01-19
parsnip-0.1.4/parsnip/tests/testthat/recipes_examples.RData |only parsnip-0.1.5/parsnip/DESCRIPTION | 10 parsnip-0.1.5/parsnip/MD5 | 73 + parsnip-0.1.5/parsnip/NAMESPACE | 5 parsnip-0.1.5/parsnip/NEWS.md | 13 parsnip-0.1.5/parsnip/R/aaa_models.R | 9 parsnip-0.1.5/parsnip/R/add_in.R |only parsnip-0.1.5/parsnip/R/augment.R |only parsnip-0.1.5/parsnip/R/boost_tree.R | 36 parsnip-0.1.5/parsnip/R/data.R |only parsnip-0.1.5/parsnip/R/descriptors.R | 6 parsnip-0.1.5/parsnip/R/fit.R | 11 parsnip-0.1.5/parsnip/R/linear_reg.R | 4 parsnip-0.1.5/parsnip/R/linear_reg_data.R | 8 parsnip-0.1.5/parsnip/R/logistic_reg_data.R | 28 parsnip-0.1.5/parsnip/R/misc.R | 24 parsnip-0.1.5/parsnip/R/multinom_reg_data.R | 4 parsnip-0.1.5/parsnip/R/reexports.R | 5 parsnip-0.1.5/parsnip/R/zzz.R | 15 parsnip-0.1.5/parsnip/build/vignette.rds |binary parsnip-0.1.5/parsnip/data |only parsnip-0.1.5/parsnip/inst/add-in |only parsnip-0.1.5/parsnip/inst/doc/parsnip_Intro.html | 385 +--------- parsnip-0.1.5/parsnip/inst/rstudio |only parsnip-0.1.5/parsnip/man/C5.0_train.Rd | 2 parsnip-0.1.5/parsnip/man/augment.model_fit.Rd |only parsnip-0.1.5/parsnip/man/fit.Rd | 2 parsnip-0.1.5/parsnip/man/model_db.Rd |only parsnip-0.1.5/parsnip/man/parsnip_addin.Rd |only parsnip-0.1.5/parsnip/man/rand_forest.Rd | 15 parsnip-0.1.5/parsnip/man/reexports.Rd | 3 parsnip-0.1.5/parsnip/man/set_new_model.Rd | 8 parsnip-0.1.5/parsnip/man/stan_conf_int.Rd |only parsnip-0.1.5/parsnip/man/xgb_train.Rd | 5 parsnip-0.1.5/parsnip/tests/testthat/test-augment.R |only parsnip-0.1.5/parsnip/tests/testthat/test_boost_tree_C50.R | 10 parsnip-0.1.5/parsnip/tests/testthat/test_boost_tree_xgboost.R | 45 - parsnip-0.1.5/parsnip/tests/testthat/test_linear_reg_keras.R | 7 parsnip-0.1.5/parsnip/tests/testthat/test_logistic_reg_keras.R | 7 parsnip-0.1.5/parsnip/tests/testthat/test_misc.R | 14 parsnip-0.1.5/parsnip/tests/testthat/test_multinom_reg_keras.R | 7 parsnip-0.1.5/parsnip/tests/testthat/test_varying.R | 75 - parsnip-0.1.5/parsnip/vignettes/articles/Models.Rmd | 2 43 files changed, 297 insertions(+), 541 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-25 4.0.0
2013-03-01 3.8.10.1
2012-04-06 3.8.10
2012-03-15 3.8.9
2012-01-13 3.8.8
2011-02-08 3.8.7
2010-03-15 3.8.6
2009-08-04 3.8.0
2009-04-04 3.7.0
2009-03-05 3.0.2
2009-03-03 3.0.0
2009-01-26 2.1.2
2008-03-26 1.1.0
2008-02-14 1.0.0
2008-01-03 0.2.1
2007-11-21 0.2.0
2007-11-09 0.1.4
2007-11-05 0.1.3
Title: Thematic Map Tools
Description: Set of tools for reading and processing spatial data. The aim is to supply the workflow to create thematic maps. This package also facilitates 'tmap', the package for visualizing thematic maps.
Author: Martijn Tennekes [aut, cre]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmaptools versions 3.1 dated 2020-07-01 and 3.1-1 dated 2021-01-19
DESCRIPTION | 14 +++++++------- MD5 | 28 ++++++++++++++-------------- NEWS | 3 +++ R/approx_areas.R | 2 +- R/approx_distances.R | 4 ++-- R/bb.R | 2 +- R/geocode_OSM.R | 12 ++++++------ R/get_asp_ratio.R | 2 +- R/palette_explorer.R | 2 +- R/simplify_shape.R | 4 ++-- man/bb.Rd | 2 +- man/geocode_OSM.Rd | 6 +++--- man/palette_explorer.Rd | 2 +- man/rev_geocode_OSM.Rd | 6 +++--- man/simplify_shape.Rd | 4 ++-- 15 files changed, 48 insertions(+), 45 deletions(-)
Title: Map Layers and Spatial Utilities for British Columbia
Description: Provides access to various spatial layers for B.C., such as
administrative boundaries, natural resource management boundaries, etc.
Most layers are imported from the 'bcdata' package as 'sf' or 'Spatial' objects
through function calls in this package.
Author: Andy Teucher [aut, cre],
Stephanie Hazlitt [aut],
Sam Albers [aut],
Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gov.bc.ca>
Diff between bcmaps versions 1.0.0 dated 2021-01-10 and 1.0.1 dated 2021-01-19
bcmaps-1.0.0/bcmaps/inst/doc/add_points.R |only bcmaps-1.0.1/bcmaps/DESCRIPTION | 6 bcmaps-1.0.1/bcmaps/MD5 | 50 +- bcmaps-1.0.1/bcmaps/NAMESPACE | 3 bcmaps-1.0.1/bcmaps/NEWS.md | 16 bcmaps-1.0.1/bcmaps/R/cded.R | 2 bcmaps-1.0.1/bcmaps/R/download_data.R | 11 bcmaps-1.0.1/bcmaps/R/get-non-catalogue-data.R | 9 bcmaps-1.0.1/bcmaps/R/shortcuts.R | 68 +++ bcmaps-1.0.1/bcmaps/R/sysdata.rda |binary bcmaps-1.0.1/bcmaps/R/utils.R | 4 bcmaps-1.0.1/bcmaps/README.md | 18 - bcmaps-1.0.1/bcmaps/build/vignette.rds |binary bcmaps-1.0.1/bcmaps/inst/doc/add_points.Rmd | 169 ++++++++- bcmaps-1.0.1/bcmaps/inst/doc/add_points.html | 259 +++++++-------- bcmaps-1.0.1/bcmaps/man/census_dissemination_area.Rd |only bcmaps-1.0.1/bcmaps/man/census_metropolitan_area.Rd |only bcmaps-1.0.1/bcmaps/man/census_tract.Rd |only bcmaps-1.0.1/bcmaps/tests/testthat/test-cded.R | 5 bcmaps-1.0.1/bcmaps/tools/readme/bc_neighbours-1.png |binary bcmaps-1.0.1/bcmaps/tools/readme/bec-1.png |binary bcmaps-1.0.1/bcmaps/tools/readme/cded-1.png |binary bcmaps-1.0.1/bcmaps/tools/readme/plot-maps-1.png |binary bcmaps-1.0.1/bcmaps/tools/readme/unnamed-chunk-6-1.png |binary bcmaps-1.0.1/bcmaps/tools/readme/watercourses-1.png |binary bcmaps-1.0.1/bcmaps/vignettes/add_points.Rmd | 169 ++++++++- bcmaps-1.0.1/bcmaps/vignettes/add_points.Rmd.orig |only bcmaps-1.0.1/bcmaps/vignettes/precompile.R |only bcmaps-1.0.1/bcmaps/vignettes/vignette-fig-convert-1.png |only bcmaps-1.0.1/bcmaps/vignettes/vignette-fig-overlay-1.png |only 30 files changed, 586 insertions(+), 203 deletions(-)
Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a unified
interface for model fitting, prediction, performance assessment, and
presentation of results. Approaches for model fitting and prediction of
numerical, categorical, or censored time-to-event outcomes include
traditional regression models, regularization methods, tree-based methods,
support vector machines, neural networks, ensembles, data preprocessing,
filtering, and model tuning and selection. Performance metrics are provided
for model assessment and can be estimated with independent test sets, split
sampling, cross-validation, or bootstrap resampling. Resample estimation
can be executed in parallel for faster processing and nested in cases of
model tuning and selection. Modeling results can be summarized with
descriptive statistics; calibration curves; variable importance; partial
dependence plots; confusion matrices; and ROC, lift, and other performance
curves.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 2.5.0 dated 2020-08-05 and 2.6.0 dated 2021-01-19
DESCRIPTION | 12 MD5 | 127 ++++--- NAMESPACE | 4 NEWS.md | 12 R/MLModel.R | 20 + R/ML_AdaBagModel.R | 11 R/ML_AdaBoostModel.R | 14 R/ML_BARTMachineModel.R | 2 R/ML_BARTModel.R | 57 +-- R/ML_BlackBoostModel.R | 30 - R/ML_C50Model.R | 4 R/ML_CForestModel.R | 10 R/ML_CoxModel.R | 8 R/ML_EarthModel.R | 12 R/ML_FDAModel.R | 6 R/ML_GAMBoostModel.R | 25 - R/ML_GBMModel.R | 25 - R/ML_GLMBoostModel.R | 22 - R/ML_GLMModel.R | 40 +- R/ML_GLMNetModel.R | 31 - R/ML_KNNModel.R | 9 R/ML_LARSModel.R | 7 R/ML_LDAModel.R | 8 R/ML_MDAModel.R | 2 R/ML_NNetModel.R | 11 R/ML_POLRModel.R | 5 R/ML_QDAModel.R | 7 R/ML_RFSRCModel.R |only R/ML_RPartModel.R | 21 - R/ML_RandomForestModel.R | 11 R/ML_RangerModel.R | 20 - R/ML_SVMModel.R | 27 - R/ML_StackedModel.R | 5 R/ML_SuperModel.R | 7 R/ML_SurvRegModel.R | 22 - R/ML_TreeModel.R | 7 R/ML_XGBModel.R | 113 +++---- R/ModeledInput.R | 32 -- R/TrainedInputs.R | 4 R/convert.R | 4 R/dependence.R | 16 - R/extract.R | 4 R/grid.R | 20 - R/modelinfo.R | 5 R/models.R | 2 R/plot.R | 91 ++--- R/resample.R | 15 R/step_kmedoids.R | 6 R/survival.R | 16 - R/utils.R | 23 + README.md | 2 build/vignette.rds |binary inst/doc/MLModels.html | 14 inst/doc/UsersGuide.R | 339 +++++++++++++++------ inst/doc/UsersGuide.Rmd | 192 +++++++++++- inst/doc/UsersGuide.html | 398 ++++++++++++++++++++----- man/BARTMachineModel.Rd | 2 man/C50Model.Rd | 2 man/MLModel.Rd | 11 man/RFSRCModel.Rd |only man/XGBModel.Rd | 2 man/models.Rd | 2 man/unMLModelFit.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-ML_RFSRCModel.R |only vignettes/UsersGuide.Rmd | 192 +++++++++++- vignettes/img/using_strategies_tune_plot-1.png |only 67 files changed, 1495 insertions(+), 653 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Jakub Nowosad [ctb],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jannes Muenchow [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 3.2 dated 2020-09-15 and 3.3 dated 2021-01-19
DESCRIPTION | 12 ++--- MD5 | 93 +++++++++++++++++++++--------------------- NAMESPACE | 2 NEWS | 5 ++ R/map_num2pal.R | 11 ++++ R/map_num2shape.R | 3 - R/pkg.R | 10 +++- R/plot_legend_prepare.R | 8 ++- R/plot_map.R | 25 +++++++---- R/plot_n.R | 12 ++--- R/pre_gather_shape_info.R | 4 + R/pre_process_shapes.R | 42 +++++++++++------- R/pre_split_x.R | 2 R/print.R | 1 R/print_tmap.R | 27 ++++++------ R/process_color_aes.R | 2 R/process_fill.R | 22 ++++----- R/process_shape_aes.R | 3 - R/process_shapes.R | 5 +- R/process_text.R | 8 ++- R/qtm.R | 4 - R/tm_layers.R | 15 ++++-- R/tm_layout.R | 2 R/tm_misc_elements.R | 4 - R/tm_shape.R | 2 R/tm_view.R | 2 R/tmap_grob.R |only R/tmap_mode.R | 2 R/xxx_scales.R | 3 - build/partial.rdb |only build/vignette.rds |binary inst/doc/tmap-getstarted.html | 2 man/land.Rd | 6 ++ man/plus-.tmap.Rd | 2 man/qtm.Rd | 2 man/tm_facets.Rd | 4 - man/tm_iso.Rd | 3 + man/tm_layout.Rd | 2 man/tm_lines.Rd | 2 man/tm_polygons.Rd | 2 man/tm_raster.Rd | 2 man/tm_shape.Rd | 2 man/tm_symbols.Rd | 2 man/tm_text.Rd | 2 man/tm_view.Rd | 2 man/tmap-element.Rd | 2 man/tmap-package.Rd | 2 man/tmap_grob.Rd |only man/tmap_mode.Rd | 2 49 files changed, 217 insertions(+), 155 deletions(-)
Title: Unified Handling of Graphics Devices
Description: Functions for creating plots and image files in a unified way
regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default
device options as well as scales and aspect ratios are controlled in a uniform
way across all device types. Switching output format requires minimal changes
in code. This package is ideal for large-scale batch processing, because it
will never leave open graphics devices or incomplete image files behind, even on
errors or user interrupts.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.devices versions 2.16.1 dated 2019-10-24 and 2.17.0 dated 2021-01-19
DESCRIPTION | 11 MD5 | 55 +-- NAMESPACE | 2 NEWS | 27 + R/DevEvalProduct.R | 2 R/capturePlot.R | 2 R/devEval.R | 2 R/devNew.R | 2 R/deviceUtils.R | 63 +++ R/recordedplot-methods.R | 2 R/toNNN.R | 36 +- build/vignette.rds |binary inst/WORDLIST |only inst/doc/R.devices-overview.R | 17 inst/doc/R.devices-overview.pdf |binary inst/doc/R.devices-overview.tex.rsp | 630 ++++++++++++++++++----------------- man/DevEvalFileProduct.Rd | 2 man/R.devices-package.Rd | 4 man/architecture.Rd | 11 man/capturePlot.Rd | 7 man/devEval.Rd | 7 man/devNew.Rd | 2 man/print.RecordedPlot.Rd | 1 man/toNNN.Rd | 2 tests/capturePlot.R | 56 +-- tests/devEval,error.R | 9 tests/devEval.R | 41 +- tests/devOptions.R | 118 +++--- vignettes/R.devices-overview.tex.rsp | 630 ++++++++++++++++++----------------- 29 files changed, 947 insertions(+), 794 deletions(-)
Title: LogNormal Response Time Item Response Theory Models
Description: Allows the simultaneous analysis of responses and response times in an Item Response Theory (IRT) modelling framework. Supports variable person speed functions (intercept, trend, quadratic), and covariates for item and person (random) parameters. Data missing-by-design can be specified. Parameter estimation is done with a MCMC algorithm. LNIRT replaces the package CIRT, which was written by Rinke Klein Entink. For reference, see the paper by Fox, Klein Entink and Van der Linden (2007), "Modeling of Responses and Response Times with the Package cirt", Journal of Statistical Software, <doi:10.18637/jss.v020.i07>.
Author: Jean-Paul Fox, Konrad Klotzke, Rinke Klein Entink
Maintainer: Konrad Klotzke <omd.bms.utwente.stats@gmail.com>
Diff between LNIRT versions 0.5.0 dated 2020-11-16 and 0.5.1 dated 2021-01-19
DESCRIPTION | 7 MD5 | 60 NAMESPACE | 73 - R/AmsterdamChess-data.R | 57 R/CredentialForm1-data.R | 83 - R/LNIRT.R | 3022 +++++++++++++++++++++++----------------------- R/LNIRT_Q.R | 885 ++++++------- R/LNRT.R | 1214 +++++++++--------- R/LNRT_Q.R | 524 +++----- R/MCMC.R | 1374 ++++++++++----------- R/MCMC_Q.R | 814 ++++++------ R/SUMMARY_LNIRT_Q.R | 1644 ++++++++++++------------- R/fit.R | 1092 ++++++++-------- R/fit_Q.R | 192 +- R/init.R | 38 R/print.R | 3060 +++++++++++++++++++++++------------------------ R/simLNIRT.R | 542 ++++---- R/simLNIRT_Q.R | 212 +-- R/summary.R | 902 ++++++------- R/tools.R | 120 - inst |only man/AmsterdamChess.Rd | 208 ++- man/CredentialForm1.Rd | 324 ++++ man/LNIRT.Rd | 200 +-- man/LNIRTQ.Rd | 88 - man/LNRT.Rd | 126 - man/LNRTQ.Rd | 56 man/dot-onAttach.Rd | 38 man/simLNIRT.Rd | 66 - man/simLNIRTQ.Rd | 42 man/summaryIRTQ.Rd | 32 31 files changed, 8714 insertions(+), 8381 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Christophe Dervieux [aut] (<https://orcid.org/0000-0003-4474-2498>),
Alison Presmanes Hill [aut] (<https://orcid.org/0000-0002-8082-1890>),
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
Jake Barlow [ctb],
James Balamuta [ctb],
JJ Allaire [ctb],
Jon Calder [ctb],
Jozef Hajnala [ctb],
Juan Manuel Vazquez [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Maëlle Salmon [ctb],
Maria Paula Caldas [ctb],
Nicolas Roelandt [ctb],
Oliver Madsen [ctb],
Raniere Silva [ctb],
TC Zhang [ctb],
Xianying Tan [ctb],
RStudio, PBC [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.0 dated 2021-01-09 and 1.1 dated 2021-01-19
DESCRIPTION | 6 +- MD5 | 20 ++++----- R/check.R | 80 ++++++++++++++++++++++++++++--------- R/hugo.R | 38 ++++++++++++++--- R/render.R | 18 ++++++-- R/serve.R | 27 +++++++++--- R/site.R | 2 R/utils.R | 107 +++++++++++++++++--------------------------------- man/build_site.Rd | 4 + man/filter_newfile.Rd | 2 man/hugo_cmd.Rd | 14 ++++++ 11 files changed, 196 insertions(+), 122 deletions(-)
Title: Tidy Wrapper for 'BayesFactor' Package
Description: Provides helper functions that make it easy to run
'BayesFactor' package tests on a data which is in a tidy format.
Additionally, it provides a more consistent syntax and by default
returns a dataframe with rich details. These functions can also return
expressions containing results from Bayes Factor tests that can then
be displayed on custom plots. Posterior estimation is carried out using
the 'bayestestR' package.
Author: Indrajeet Patil [aut, cre, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between tidyBF versions 0.4.2 dated 2020-12-08 and 0.4.3 dated 2021-01-19
DESCRIPTION | 13 +- MD5 | 46 +++++--- NAMESPACE | 10 + NEWS.md | 4 R/bf_contingency_tab.R | 45 +++----- R/bf_expr_template.R | 67 +++++++----- R/bf_ttest.R | 26 +--- R/global_vars.R | 4 R/helpers_bf_tests.R | 78 ++------------ README.md | 138 ++++++++++++++----------- man/bf_expr_template.Rd | 12 +- man/figures/README-expr_plot2-1.png |binary man/figures/README-expr_plot5-1.png |binary man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only tests/testthat/test-bf_contingency_tab.R | 166 +++++++------------------------ tests/testthat/test-bf_corr_test.R | 80 ++++---------- tests/testthat/test-bf_extractor.R | 16 +- tests/testthat/test-bf_meta_random.R | 34 +----- tests/testthat/test-bf_oneway_anova.R | 128 ++++++----------------- tests/testthat/test-bf_ttest.R | 127 +++++------------------ tests/testthat/test-loop_execution.R | 26 ++-- 28 files changed, 375 insertions(+), 645 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
MongoDB, Inc [cph] (Bundled mongo-c-driver, see AUTHORS file)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between mongolite versions 2.2.1 dated 2020-11-21 and 2.3.0 dated 2021-01-19
DESCRIPTION | 6 +++--- MD5 | 23 ++++++++++++----------- NAMESPACE | 1 + NEWS | 5 +++++ R/gridfs.R | 2 +- R/hex.R | 16 ++++++++++++++++ R/mongo.R | 2 +- R/pool.R | 7 ++++--- configure | 13 +++++-------- man/gridfs.Rd | 2 +- man/mongo.Rd | 2 +- man/oid_to_timestamp.Rd |only src/utils.c | 2 ++ 13 files changed, 52 insertions(+), 29 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates
graphics with details from statistical tests included in the plots
themselves. It provides an easier API to generate information-rich plots
for statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical tests: parametric, nonparametric, robust, and Bayesian
versions of t-test/ANOVA, correlation analyses, contingency table
analysis, meta-analysis, and regression analyses.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.6.6 dated 2020-12-03 and 0.6.8 dated 2021-01-19
ggstatsplot-0.6.6/ggstatsplot/man/line_labeller.Rd |only ggstatsplot-0.6.6/ggstatsplot/man/mean_ggrepel.Rd |only ggstatsplot-0.6.8/ggstatsplot/DESCRIPTION | 18 ggstatsplot-0.6.8/ggstatsplot/MD5 | 244 +- ggstatsplot-0.6.8/ggstatsplot/NAMESPACE | 28 ggstatsplot-0.6.8/ggstatsplot/NEWS.md | 59 ggstatsplot-0.6.8/ggstatsplot/R/combine_plots.R | 20 ggstatsplot-0.6.8/ggstatsplot/R/combine_plots2.R | 16 ggstatsplot-0.6.8/ggstatsplot/R/ggbarstats.R | 34 ggstatsplot-0.6.8/ggstatsplot/R/ggbetweenstats.R | 84 ggstatsplot-0.6.8/ggstatsplot/R/ggcoefstats.R | 121 - ggstatsplot-0.6.8/ggstatsplot/R/ggcorrmat.R | 94 ggstatsplot-0.6.8/ggstatsplot/R/ggdotplotstats.R | 88 ggstatsplot-0.6.8/ggstatsplot/R/gghistostats.R | 148 - ggstatsplot-0.6.8/ggstatsplot/R/ggpiestats.R | 27 ggstatsplot-0.6.8/ggstatsplot/R/ggscatterstats.R | 83 ggstatsplot-0.6.8/ggstatsplot/R/ggstatsplot-package.R | 22 ggstatsplot-0.6.8/ggstatsplot/R/ggwithinstats.R | 74 ggstatsplot-0.6.8/ggstatsplot/R/global_vars.R | 12 ggstatsplot-0.6.8/ggstatsplot/R/grouped_ggbarstats.R | 27 ggstatsplot-0.6.8/ggstatsplot/R/grouped_ggbetweenstats.R | 38 ggstatsplot-0.6.8/ggstatsplot/R/grouped_ggcorrmat.R | 16 ggstatsplot-0.6.8/ggstatsplot/R/grouped_ggdotplotstats.R | 32 ggstatsplot-0.6.8/ggstatsplot/R/grouped_gghistostats.R | 19 ggstatsplot-0.6.8/ggstatsplot/R/grouped_ggpiestats.R | 14 ggstatsplot-0.6.8/ggstatsplot/R/grouped_ggscatterstats.R | 7 ggstatsplot-0.6.8/ggstatsplot/R/grouped_ggwithinstats.R | 14 ggstatsplot-0.6.8/ggstatsplot/R/helpers_ggbetweenstats_graphics.R | 172 - ggstatsplot-0.6.8/ggstatsplot/R/helpers_ggcatstats_graphics.R | 18 ggstatsplot-0.6.8/ggstatsplot/R/helpers_ggcoefstats_graphics.R | 38 ggstatsplot-0.6.8/ggstatsplot/R/helpers_gghistostats_graphics.R | 144 - ggstatsplot-0.6.8/ggstatsplot/R/helpers_grouped_functions.R | 2 ggstatsplot-0.6.8/ggstatsplot/R/helpers_messages.R | 5 ggstatsplot-0.6.8/ggstatsplot/R/switch_functions.R | 42 ggstatsplot-0.6.8/ggstatsplot/README.md | 803 ++++--- ggstatsplot-0.6.8/ggstatsplot/build/ggstatsplot.pdf |only ggstatsplot-0.6.8/ggstatsplot/inst/WORDLIST | 17 ggstatsplot-0.6.8/ggstatsplot/inst/doc/additional.Rmd | 14 ggstatsplot-0.6.8/ggstatsplot/inst/doc/additional.html | 14 ggstatsplot-0.6.8/ggstatsplot/man/aesthetic_addon.Rd | 6 ggstatsplot-0.6.8/ggstatsplot/man/centrality_ggrepel.Rd |only ggstatsplot-0.6.8/ggstatsplot/man/combine_plots.Rd | 13 ggstatsplot-0.6.8/ggstatsplot/man/combine_plots2.Rd | 8 ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggbarstats1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggbarstats2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggbetweenstats1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggbetweenstats2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggbetweenstats3-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggcoefstats1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggcoefstats2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggcorrmat1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggcorrmat2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggdotplotstats1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggdotplotstats2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-gghistostats1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-gghistostats2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggpiestats1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggpiestats2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggpiestats3-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggscatterstats1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggscatterstats2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggscatterstats3-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggwithinstats1-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ggwithinstats2-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/README-ridgeplot-1.png |binary ggstatsplot-0.6.8/ggstatsplot/man/figures/lifecycle-archived.svg |only ggstatsplot-0.6.8/ggstatsplot/man/figures/lifecycle-defunct.svg |only ggstatsplot-0.6.8/ggstatsplot/man/figures/lifecycle-deprecated.svg |only ggstatsplot-0.6.8/ggstatsplot/man/figures/lifecycle-experimental.svg |only ggstatsplot-0.6.8/ggstatsplot/man/figures/lifecycle-maturing.svg |only ggstatsplot-0.6.8/ggstatsplot/man/figures/lifecycle-questioning.svg |only ggstatsplot-0.6.8/ggstatsplot/man/figures/lifecycle-stable.svg |only ggstatsplot-0.6.8/ggstatsplot/man/figures/lifecycle-superseded.svg |only ggstatsplot-0.6.8/ggstatsplot/man/ggbarstats.Rd | 16 ggstatsplot-0.6.8/ggstatsplot/man/ggbetweenstats.Rd | 43 ggstatsplot-0.6.8/ggstatsplot/man/ggcoefstats.Rd | 7 ggstatsplot-0.6.8/ggstatsplot/man/ggcorrmat.Rd | 26 ggstatsplot-0.6.8/ggstatsplot/man/ggdotplotstats.Rd | 51 ggstatsplot-0.6.8/ggstatsplot/man/gghistostats.Rd | 65 ggstatsplot-0.6.8/ggstatsplot/man/ggpiestats.Rd | 14 ggstatsplot-0.6.8/ggstatsplot/man/ggscatterstats.Rd | 70 ggstatsplot-0.6.8/ggstatsplot/man/ggstatsplot-package.Rd | 22 ggstatsplot-0.6.8/ggstatsplot/man/ggwithinstats.Rd | 47 ggstatsplot-0.6.8/ggstatsplot/man/grouped_ggbarstats.Rd | 20 ggstatsplot-0.6.8/ggstatsplot/man/grouped_ggbetweenstats.Rd | 46 ggstatsplot-0.6.8/ggstatsplot/man/grouped_ggcorrmat.Rd | 24 ggstatsplot-0.6.8/ggstatsplot/man/grouped_ggdotplotstats.Rd | 63 ggstatsplot-0.6.8/ggstatsplot/man/grouped_gghistostats.Rd | 46 ggstatsplot-0.6.8/ggstatsplot/man/grouped_ggpiestats.Rd | 16 ggstatsplot-0.6.8/ggstatsplot/man/grouped_ggscatterstats.Rd | 33 ggstatsplot-0.6.8/ggstatsplot/man/grouped_ggwithinstats.Rd | 27 ggstatsplot-0.6.8/ggstatsplot/man/grouped_list.Rd | 2 ggstatsplot-0.6.8/ggstatsplot/man/histo_labeller.Rd | 39 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/Rplots.pdf |binary ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-combine_plots.R | 28 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-ggbarstats.R | 95 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-ggbetweenstats.R | 478 ++-- ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-ggcoefstats.R | 444 +++- ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-ggcorrmat.R | 1069 ++++++++-- ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-ggdotplotstats.R | 152 - ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-gghistostats.R | 478 +--- ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-ggpiestats.R | 129 - ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-ggscatterstats.R | 275 +- ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-ggwithinstats.R | 275 +- ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-grouped_ggbarstats.R | 34 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-grouped_ggbetweenstats.R | 32 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-grouped_ggcorrmat.R | 35 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-grouped_ggdotplotstats.R | 26 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-grouped_gghistostats.R | 26 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-grouped_ggpiestats.R | 18 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-grouped_ggscatterstats.R | 54 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-grouped_ggwithinstats.R | 30 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-helpers.R | 18 ggstatsplot-0.6.8/ggstatsplot/tests/testthat/test-pairwise_ggsignif.R | 88 ggstatsplot-0.6.8/ggstatsplot/vignettes/additional.Rmd | 14 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/faq.Rmd | 83 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/gallery.Rmd | 4 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/ggbetweenstats.Rmd | 27 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/ggcoefstats.Rmd | 977 +++++---- ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/ggcorrmat.Rmd | 36 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/ggdotplotstats.Rmd | 30 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/gghistostats.Rmd | 36 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/ggpiestats.Rmd | 8 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/ggscatterstats.Rmd | 65 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/ggwithinstats.Rmd | 37 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/other_resources.Rmd | 2 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/purrr_examples.Rmd | 42 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/session_info.Rmd | 2 ggstatsplot-0.6.8/ggstatsplot/vignettes/web_only/theme_ggstatsplot.Rmd | 9 129 files changed, 4669 insertions(+), 3799 deletions(-)
Title: Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Description: The Bayesian optimal interval (BOIN) design is a novel phase I
clinical trial design for finding the maximum tolerated dose (MTD). It can be
used to design both single-agent and drug-combination trials. The BOIN design
is motivated by the top priority and concern of clinicians when testing a new
drug, which is to effectively treat patients and minimize the chance of exposing
them to subtherapeutic or overly toxic doses. The prominent advantage of the
BOIN design is that it achieves simplicity and superior performance at the same
time. The BOIN design is algorithm-based and can be implemented in a simple
way similar to the traditional 3+3 design. The BOIN design yields an average
performance that is comparable to that of the continual reassessment method
(CRM, one of the best model-based designs) in terms of selecting the MTD, but
has a substantially lower risk of assigning patients to subtherapeutic or overly
toxic doses. For tutorial, please check Yan et al. (2020) <doi:10.18637/jss.v094.i13>.
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan <yyuan@mdanderson.org>
Diff between BOIN versions 2.7.1 dated 2020-11-19 and 2.7.2 dated 2021-01-19
DESCRIPTION | 8 MD5 | 16 R/get.boundary.R | 7 R/get.oc.R | 6 R/get.oc.comb.R | 2426 ++++++++++++++++++++++++++-------------------------- R/plot.boin.R | 6 R/select.mtd.R | 4 R/select.mtd.comb.R | 4 R/summary.boin.R | 2 9 files changed, 1245 insertions(+), 1234 deletions(-)
Title: Visualization and Imputation of Missing Values
Description: New tools for the visualization of missing and/or imputed values
are introduced, which can be used for exploring the data and the structure of
the missing and/or imputed values. Depending on this structure of the missing
values, the corresponding methods may help to identify the mechanism generating
the missing values and allows to explore the data including missing values.
In addition, the quality of imputation can be visually explored using various
univariate, bivariate, multiple and multivariate plot methods. A graphical user
interface available in the separate package VIMGUI allows an easy handling of
the implemented plot methods.
Author: Matthias Templ [aut, cre],
Alexander Kowarik [aut] (<https://orcid.org/0000-0001-8598-4130>),
Andreas Alfons [aut],
Gregor de Cillia [aut],
Bernd Prantner [ctb],
Wolfgang Rannetbauer [aut]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between VIM versions 6.0.0 dated 2020-05-08 and 6.1.0 dated 2021-01-19
DESCRIPTION | 16 MD5 | 94 - NAMESPACE | 1 NEWS.md | 16 R/barMiss.R | 24 R/histMiss.R | 22 R/hotdeck.R | 263 ++-- R/kNN.R | 4 R/matrixplot.R | 3 R/regressionImp.R | 4 R/scattMiss.R | 24 R/tableMiss.R |only build/vignette.rds |binary data/SBS5242.rda |binary data/bcancer.rda |binary data/brittleness.rda |binary data/chorizonDL.rda |binary data/colic.rda |binary data/diabetes.rda |binary data/food.rda |binary data/kola.background.rda |binary data/pulplignin.rda |binary data/sleep.rda |binary data/tao.rda |binary data/testdata.RData |binary data/toydataMiss.rda |binary data/wine.rda |binary inst/doc/VIM.Rmd | 18 inst/doc/VIM.html | 556 +++++--- inst/doc/VisualImp.R |only inst/doc/VisualImp.Rmd |only inst/doc/VisualImp.html |only inst/doc/donorImp.R |only inst/doc/donorImp.Rmd |only inst/doc/donorImp.html |only inst/doc/irmi.R |only inst/doc/irmi.Rmd |only inst/doc/irmi.html |only inst/doc/modelImp.R | 53 inst/doc/modelImp.Rmd | 89 + inst/doc/modelImp.html | 2344 ++++++++++++++++++++++++++++++++---- man/colSequence.Rd | 2 man/hotdeck.Rd | 33 man/irmi.Rd | 2 man/matchImpute.Rd | 2 man/rugNA.Rd | 2 man/tableMiss.Rd |only tests/testthat/Rplots.pdf |only tests/testthat/test_hotdeck.R | 27 tests/testthat/test_kNN.R | 12 tests/testthat/test_regressionImp.R |only vignettes/VIM.Rmd | 18 vignettes/VisualImp.Rmd |only vignettes/donorImp.Rmd |only vignettes/irmi.Rmd |only vignettes/modelImp.Rmd | 89 + 56 files changed, 3030 insertions(+), 688 deletions(-)
Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which are
a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Xue-Song Liu [aut] (<https://orcid.org/0000-0002-7736-0077>),
Martin Morgan [ctb],
Christine Stawitz [rev] (Christine reviewed the package for ropensci,
see <https://github.com/ropensci/software-review/issues/315>),
Carl Ganz [rev] (Carl reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/315>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.3.6 dated 2020-11-23 and 1.4.0 dated 2021-01-19
DESCRIPTION | 6 - MD5 | 20 +-- NEWS.md | 4 R/XenaHub-class.R | 23 ++++ R/XenaQuery.R | 11 +- R/fetch.R | 3 README.md | 79 +++++++++------ inst/doc/USCSXenaTools.R | 6 + inst/doc/USCSXenaTools.Rmd | 34 ++++-- inst/doc/USCSXenaTools.html | 227 ++++++++++++++++---------------------------- vignettes/USCSXenaTools.Rmd | 34 ++++-- 11 files changed, 235 insertions(+), 212 deletions(-)
Title: Expressions and Dataframes with Statistical Details
Description: Statistical processing backend for 'ggstatsplot',
this package creates expressions with details from statistical tests.
It can additionally return dataframes with these results, which also
make these functions a more pipe-friendly way to do statistical
analysis. Currently, it supports only the most common types of
statistical tests: parametric, nonparametric, robust, and Bayesian
versions of t-test/ANOVA, correlation analyses, contingency table
analysis, and meta-analysis.
Author: Indrajeet Patil [cre, aut, cph]
(<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 0.6.2 dated 2020-12-08 and 0.7.0 dated 2021-01-19
statsExpressions-0.6.2/statsExpressions/R/helpers_anova.R |only statsExpressions-0.6.2/statsExpressions/R/helpers_contingency_tabs.R |only statsExpressions-0.6.2/statsExpressions/R/helpers_correlation.R |only statsExpressions-0.6.2/statsExpressions/R/helpers_meta_random.R |only statsExpressions-0.6.2/statsExpressions/R/helpers_miscellaneous.R |only statsExpressions-0.6.2/statsExpressions/R/helpers_t_onesample.R |only statsExpressions-0.6.2/statsExpressions/R/helpers_t_test.R |only statsExpressions-0.6.2/statsExpressions/man/expr_anova_bayes.Rd |only statsExpressions-0.6.2/statsExpressions/man/expr_anova_nonparametric.Rd |only statsExpressions-0.6.2/statsExpressions/man/expr_anova_parametric.Rd |only statsExpressions-0.6.2/statsExpressions/man/expr_anova_robust.Rd |only statsExpressions-0.6.2/statsExpressions/man/expr_t_bayes.Rd |only statsExpressions-0.6.2/statsExpressions/man/expr_t_nonparametric.Rd |only statsExpressions-0.6.2/statsExpressions/man/expr_t_parametric.Rd |only statsExpressions-0.6.2/statsExpressions/man/expr_t_robust.Rd |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-expr_anova_bayes.R |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-expr_anova_nonparametric.R |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-expr_anova_parametric.R |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-expr_anova_robust.R |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-expr_t_bayes.R |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-expr_t_nonparametric.R |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-expr_t_parametric.R |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-expr_t_robust.R |only statsExpressions-0.6.2/statsExpressions/tests/testthat/test-switch_statements.R |only statsExpressions-0.7.0/statsExpressions/DESCRIPTION | 16 statsExpressions-0.7.0/statsExpressions/MD5 | 123 ++--- statsExpressions-0.7.0/statsExpressions/NAMESPACE | 57 +- statsExpressions-0.7.0/statsExpressions/NEWS.md | 44 + statsExpressions-0.7.0/statsExpressions/R/contingency_tabs.R |only statsExpressions-0.7.0/statsExpressions/R/corr_test.R |only statsExpressions-0.7.0/statsExpressions/R/global_vars.R | 17 statsExpressions-0.7.0/statsExpressions/R/helpers_bf_tests.R |only statsExpressions-0.7.0/statsExpressions/R/helpers_easystats.R |only statsExpressions-0.7.0/statsExpressions/R/helpers_expr_templates.R |only statsExpressions-0.7.0/statsExpressions/R/meta_random.R |only statsExpressions-0.7.0/statsExpressions/R/oneway_anova.R |only statsExpressions-0.7.0/statsExpressions/R/reexports.R | 22 statsExpressions-0.7.0/statsExpressions/R/t_onesample.R |only statsExpressions-0.7.0/statsExpressions/R/t_twosample.R |only statsExpressions-0.7.0/statsExpressions/README.md | 49 +- statsExpressions-0.7.0/statsExpressions/inst/WORDLIST | 8 statsExpressions-0.7.0/statsExpressions/inst/doc/stats_details.Rmd | 29 - statsExpressions-0.7.0/statsExpressions/inst/doc/stats_details.html | 23 - statsExpressions-0.7.0/statsExpressions/man/bf_expr_template.Rd |only statsExpressions-0.7.0/statsExpressions/man/bf_extractor.Rd |only statsExpressions-0.7.0/statsExpressions/man/expr_contingency_tab.Rd | 72 ++- statsExpressions-0.7.0/statsExpressions/man/expr_corr_test.Rd | 55 -- statsExpressions-0.7.0/statsExpressions/man/expr_meta_random.Rd | 10 statsExpressions-0.7.0/statsExpressions/man/expr_oneway_anova.Rd |only statsExpressions-0.7.0/statsExpressions/man/expr_t_onesample.Rd | 31 - statsExpressions-0.7.0/statsExpressions/man/expr_t_twosample.Rd |only statsExpressions-0.7.0/statsExpressions/man/expr_template.Rd | 40 - statsExpressions-0.7.0/statsExpressions/man/figures/README-anova_parametric2-1.png |binary statsExpressions-0.7.0/statsExpressions/man/figures/README-ggpubr_anova-1.png |binary statsExpressions-0.7.0/statsExpressions/man/figures/README-t_ggiraphExtra-1.png |binary statsExpressions-0.7.0/statsExpressions/man/figures/README-t_one-1.png |binary statsExpressions-0.7.0/statsExpressions/man/figures/README-t_two_paired1-1.png |binary statsExpressions-0.7.0/statsExpressions/man/figures/lifecycle-archived.svg |only statsExpressions-0.7.0/statsExpressions/man/figures/lifecycle-defunct.svg |only statsExpressions-0.7.0/statsExpressions/man/figures/lifecycle-deprecated.svg |only statsExpressions-0.7.0/statsExpressions/man/figures/lifecycle-experimental.svg |only statsExpressions-0.7.0/statsExpressions/man/figures/lifecycle-maturing.svg |only statsExpressions-0.7.0/statsExpressions/man/figures/lifecycle-questioning.svg |only statsExpressions-0.7.0/statsExpressions/man/figures/lifecycle-stable.svg |only statsExpressions-0.7.0/statsExpressions/man/figures/lifecycle-superseded.svg |only statsExpressions-0.7.0/statsExpressions/man/reexports.Rd | 7 statsExpressions-0.7.0/statsExpressions/man/tidy_model_effectsize.Rd |only statsExpressions-0.7.0/statsExpressions/man/tidy_model_parameters.Rd | 6 statsExpressions-0.7.0/statsExpressions/man/tidy_model_performance.Rd | 6 statsExpressions-0.7.0/statsExpressions/tests/testthat/test-bf_extractor.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_contingency_tab.R | 101 ++-- statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_contingency_tab_bayes.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_corr_test.R | 73 --- statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_corr_test_bayes.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_meta_random_bayes.R | 63 +- statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_meta_random_parametric.R | 12 statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_meta_random_robust.R | 8 statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_oneway_anova_bayes.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_oneway_anova_nonparametric.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_oneway_anova_parametric.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_oneway_anova_robust.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_t_onesample.R | 230 ++++++---- statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_t_twosample_bayes.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_t_twosample_nonparametric.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_t_twosample_parametric.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_t_twosample_robust.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-expr_templates.R | 36 + statsExpressions-0.7.0/statsExpressions/tests/testthat/test-loop_execution.R | 18 statsExpressions-0.7.0/statsExpressions/tests/testthat/test-loop_execution_bayes.R |only statsExpressions-0.7.0/statsExpressions/tests/testthat/test-t-dataframes.R |only statsExpressions-0.7.0/statsExpressions/vignettes/stats_details.Rmd | 29 - statsExpressions-0.7.0/statsExpressions/vignettes/web_only/dataframe_outputs.Rmd | 92 ++-- 92 files changed, 711 insertions(+), 566 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Interface for the 'Box.com API'
Description: An R interface for the remote file hosting service 'Box'
(<https://www.box.com/>). In addition to uploading and downloading files,
this package includes functions which mirror base R operations for local
files, (e.g. box_load(), box_save(), box_read(), box_setwd(), etc.), as well
as 'git' style functions for entire directories (e.g. box_fetch(),
box_push()).
Author: Brendan Rocks [aut],
Ian Lyttle [aut, cre] (<https://orcid.org/0000-0001-9962-4849>),
Nathan Day [aut] (<https://orcid.org/0000-0002-6714-8611>),
Vincent Fulco [ctb],
Alec Wong [ctb],
Alex Brodersen [ctb]
Maintainer: Ian Lyttle <ian.lyttle@se.com>
Diff between boxr versions 0.3.5 dated 2019-11-19 and 0.3.6 dated 2021-01-19
boxr-0.3.5/boxr/R/boxr_invite.R |only boxr-0.3.6/boxr/DESCRIPTION | 33 - boxr-0.3.6/boxr/MD5 | 174 +++--- boxr-0.3.6/boxr/NAMESPACE | 30 + boxr-0.3.6/boxr/NEWS.md | 47 + boxr-0.3.6/boxr/R/boxr-package.R | 7 boxr-0.3.6/boxr/R/boxr__internal_dir_comparison.R | 4 boxr-0.3.6/boxr/R/boxr__internal_get.R | 16 boxr-0.3.6/boxr/R/boxr__internal_misc.R | 199 +++++++ boxr-0.3.6/boxr/R/boxr__internal_update_upload.R | 12 boxr-0.3.6/boxr/R/boxr__internal_verb_exit.R | 26 - boxr-0.3.6/boxr/R/boxr_add_description.R | 13 boxr-0.3.6/boxr/R/boxr_auth.R | 128 +++- boxr-0.3.6/boxr/R/boxr_collab.R |only boxr-0.3.6/boxr/R/boxr_comment.R |only boxr-0.3.6/boxr/R/boxr_delete_restore.R | 39 - boxr-0.3.6/boxr/R/boxr_dir_verbs.R | 8 boxr-0.3.6/boxr/R/boxr_file_versions.R | 157 ++++-- boxr-0.3.6/boxr/R/boxr_misc.R | 58 +- boxr-0.3.6/boxr/R/boxr_read.R | 22 boxr-0.3.6/boxr/R/boxr_s3_classes.R | 226 ++++++++ boxr-0.3.6/boxr/R/boxr_save_load.R | 40 + boxr-0.3.6/boxr/R/boxr_search.R | 32 - boxr-0.3.6/boxr/R/boxr_source.R | 8 boxr-0.3.6/boxr/R/boxr_upload_download.R | 13 boxr-0.3.6/boxr/R/boxr_write.R | 65 ++ boxr-0.3.6/boxr/R/utils-documentation.R |only boxr-0.3.6/boxr/R/utils-pipe.R |only boxr-0.3.6/boxr/R/zzz.R | 15 boxr-0.3.6/boxr/build/vignette.rds |binary boxr-0.3.6/boxr/inst/doc/boxr-app-interactive.R |only boxr-0.3.6/boxr/inst/doc/boxr-app-interactive.Rmd | 2 boxr-0.3.6/boxr/inst/doc/boxr-app-interactive.html | 250 +-------- boxr-0.3.6/boxr/inst/doc/boxr-app-service.R |only boxr-0.3.6/boxr/inst/doc/boxr-app-service.Rmd | 32 - boxr-0.3.6/boxr/inst/doc/boxr-app-service.html | 307 +++-------- boxr-0.3.6/boxr/inst/doc/boxr-apps.R |only boxr-0.3.6/boxr/inst/doc/boxr-apps.Rmd | 2 boxr-0.3.6/boxr/inst/doc/boxr-apps.html | 202 ------- boxr-0.3.6/boxr/inst/doc/boxr.R |only boxr-0.3.6/boxr/inst/doc/boxr.Rmd | 84 ++- boxr-0.3.6/boxr/inst/doc/boxr.html | 361 ++++---------- boxr-0.3.6/boxr/inst/doc/design.R |only boxr-0.3.6/boxr/inst/doc/design.Rmd |only boxr-0.3.6/boxr/inst/doc/design.html |only boxr-0.3.6/boxr/man/boxGet.Rd | 10 boxr-0.3.6/boxr/man/box_add_description.Rd | 5 boxr-0.3.6/boxr/man/box_auth.Rd | 14 boxr-0.3.6/boxr/man/box_auth_on_attach.Rd | 6 boxr-0.3.6/boxr/man/box_auth_service.Rd | 17 boxr-0.3.6/boxr/man/box_browse.Rd |only boxr-0.3.6/boxr/man/box_collab_create.Rd |only boxr-0.3.6/boxr/man/box_collab_delete.Rd |only boxr-0.3.6/boxr/man/box_collab_get.Rd |only boxr-0.3.6/boxr/man/box_comment_create.Rd |only boxr-0.3.6/boxr/man/box_delete_file.Rd | 6 boxr-0.3.6/boxr/man/box_dir_diff.Rd | 10 boxr-0.3.6/boxr/man/box_dir_invite.Rd | 69 -- boxr-0.3.6/boxr/man/box_dl.Rd | 27 - boxr-0.3.6/boxr/man/box_fetch.Rd | 22 boxr-0.3.6/boxr/man/box_fresh_auth.Rd | 3 boxr-0.3.6/boxr/man/box_ls.Rd | 4 boxr-0.3.6/boxr/man/box_previous_versions.Rd | 23 boxr-0.3.6/boxr/man/box_read.Rd | 26 - boxr-0.3.6/boxr/man/box_save.Rd | 33 - boxr-0.3.6/boxr/man/box_search.Rd | 43 + boxr-0.3.6/boxr/man/box_setwd.Rd | 2 boxr-0.3.6/boxr/man/box_source.Rd | 5 boxr-0.3.6/boxr/man/box_version_api.Rd |only boxr-0.3.6/boxr/man/box_version_history.Rd |only boxr-0.3.6/boxr/man/box_write.Rd | 53 +- boxr-0.3.6/boxr/man/boxr-package.Rd | 2 boxr-0.3.6/boxr/man/boxr_S3_classes.Rd | 35 + boxr-0.3.6/boxr/man/boxr_options.Rd | 4 boxr-0.3.6/boxr/man/downloadDirFiles.Rd | 8 boxr-0.3.6/boxr/man/figures/lifecycle-archived.svg |only boxr-0.3.6/boxr/man/figures/lifecycle-defunct.svg |only boxr-0.3.6/boxr/man/figures/lifecycle-deprecated.svg |only boxr-0.3.6/boxr/man/figures/lifecycle-experimental.svg |only boxr-0.3.6/boxr/man/figures/lifecycle-maturing.svg |only boxr-0.3.6/boxr/man/figures/lifecycle-questioning.svg |only boxr-0.3.6/boxr/man/figures/lifecycle-soft-deprecated.svg |only boxr-0.3.6/boxr/man/figures/lifecycle-stable.svg |only boxr-0.3.6/boxr/man/figures/lifecycle-superseded.svg |only boxr-0.3.6/boxr/man/pipe.Rd |only boxr-0.3.6/boxr/tests/testthat/setup_auth.R | 1 boxr-0.3.6/boxr/tests/testthat/test_00_internal.R |only boxr-0.3.6/boxr/tests/testthat/test_02_clear_out.R | 15 boxr-0.3.6/boxr/tests/testthat/test_03_upload_download.R | 28 - boxr-0.3.6/boxr/tests/testthat/test_05_read_write.R | 15 boxr-0.3.6/boxr/tests/testthat/test_06_push.R | 14 boxr-0.3.6/boxr/tests/testthat/test_07_fetch.R | 13 boxr-0.3.6/boxr/tests/testthat/test_08_versions.R | 30 - boxr-0.3.6/boxr/tests/testthat/test_10_descriptions.R | 1 boxr-0.3.6/boxr/tests/testthat/test_11_write.R | 17 boxr-0.3.6/boxr/tests/testthat/test_12_ls.R | 16 boxr-0.3.6/boxr/tests/testthat/test_13_collab.R |only boxr-0.3.6/boxr/tests/testthat/test_14_comments.R |only boxr-0.3.6/boxr/tests/testthat/test_15_delete.R |only boxr-0.3.6/boxr/tests/testthat/test_99_tidy_up.R | 2 boxr-0.3.6/boxr/vignettes/boxr-app-interactive.Rmd | 2 boxr-0.3.6/boxr/vignettes/boxr-app-service.Rmd | 32 - boxr-0.3.6/boxr/vignettes/boxr-apps.Rmd | 2 boxr-0.3.6/boxr/vignettes/boxr.Rmd | 84 ++- boxr-0.3.6/boxr/vignettes/design.Rmd |only 105 files changed, 1857 insertions(+), 1454 deletions(-)
Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting
spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL'
bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Michael Sumner [ctb] (<https://orcid.org/0000-0002-2471-7511>),
Etienne Racine [ctb],
Adriano Fantini [ctb],
David Blodgett [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between stars versions 0.4-3 dated 2020-07-08 and 0.5-0 dated 2021-01-19
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Title: Estimation of Characteristics of Seasonal and Sporadic
Infectious Disease Outbreaks Using Generalized Additive
Modeling with Penalized Basis Splines
Description: Inference of infectious disease outcomes using generalized additive
(mixed) models with penalized basis splines (P-Splines). See
<https://medrxiv.org/cgi/content/short/2020.07.14.20138180v1>.
Author: Ben Artin [aut, cre, cph]
Maintainer: Ben Artin <ben@artins.org>
Diff between pspline.inference versions 1.0.2 dated 2020-07-17 and 1.0.4 dated 2021-01-19
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- inst/doc/seasonal.html | 20 ++++++++++---------- vignettes/figures.R | 2 +- 4 files changed, 20 insertions(+), 20 deletions(-)
More information about pspline.inference at CRAN
Permanent link
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression;
- generalised linear mixed models;
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.16-0 dated 2021-01-18 and 4.16-1 dated 2021-01-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 10 ++++++++++ R/metabind.R | 4 ++++ R/metagen.R | 2 +- 5 files changed, 23 insertions(+), 9 deletions(-)
Title: Performance Measures for Statistical Learning
Description: Provides the biggest amount of statistical measures in the whole R world. Includes measures of regression, (multiclass) classification and multilabel classification. The measures come mainly from the 'mlr' package and were programed by several 'mlr' developers.
Author: Philipp Probst [aut, cre]
Maintainer: Philipp Probst <philipp_probst@gmx.de>
Diff between measures versions 0.2 dated 2018-07-25 and 0.3 dated 2021-01-19
DESCRIPTION | 8 MD5 | 136 +++--- NAMESPACE | 128 +++--- R/helpers.R | 152 +++---- R/listAllMeasures.R | 84 ++-- R/measures_binaryclass.R | 898 ++++++++++++++++++++++----------------------- R/measures_multiclass.R | 666 ++++++++++++++++----------------- R/measures_multilabel.R | 238 +++++------ R/measures_regression.R | 678 ++++++++++++++++----------------- README.md | 150 +++---- man/ACC.Rd | 2 man/ARSQ.Rd | 2 man/AUC.Rd | 2 man/BAC.Rd | 2 man/BER.Rd | 2 man/Brier.Rd | 2 man/BrierScaled.Rd | 2 man/EXPVAR.Rd | 2 man/F1.Rd | 2 man/FDR.Rd | 2 man/FN.Rd | 2 man/FNR.Rd | 2 man/FP.Rd | 2 man/FPR.Rd | 2 man/GMEAN.Rd | 2 man/GPR.Rd | 2 man/KAPPA.Rd | 2 man/KendallTau.Rd | 2 man/LSR.Rd | 2 man/Logloss.Rd | 2 man/MAE.Rd | 2 man/MAPE.Rd | 2 man/MCC.Rd | 2 man/MEDAE.Rd | 2 man/MEDSE.Rd | 2 man/MMCE.Rd | 2 man/MSE.Rd | 2 man/MSLE.Rd | 2 man/MultilabelACC.Rd | 2 man/MultilabelF1.Rd | 2 man/MultilabelHamloss.Rd | 2 man/MultilabelPPV.Rd | 2 man/MultilabelSubset01.Rd | 2 man/MultilabelTPR.Rd | 2 man/NPV.Rd | 2 man/PPV.Rd | 2 man/QSR.Rd | 2 man/RAE.Rd | 2 man/RMSE.Rd | 2 man/RMSLE.Rd | 2 man/RRSE.Rd | 2 man/RSQ.Rd | 2 man/SAE.Rd | 2 man/SSE.Rd | 2 man/SSR.Rd | 2 man/SpearmanRho.Rd | 2 man/TN.Rd | 2 man/TNR.Rd | 2 man/TP.Rd | 2 man/TPR.Rd | 2 man/WKAPPA.Rd | 2 man/listAllMeasures.Rd | 2 man/multiclass.AU1P.Rd | 2 man/multiclass.AU1U.Rd | 2 man/multiclass.AUNP.Rd | 2 man/multiclass.AUNU.Rd | 2 man/multiclass.Brier.Rd | 2 tests/testthat.R | 8 tests/testthat/test_base.R | 198 ++++----- 69 files changed, 1729 insertions(+), 1729 deletions(-)
Title: Lipid Annotation for LC-MS/MS DDA or DIA Data
Description: Lipid annotation in untargeted liquid chromatography mass spectrometry lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Author: M Isabel Alcoriza-Balaguer, J Carlos Garcia-Canaveras
Maintainer: M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between LipidMS versions 1.2.0 dated 2020-11-20 and 2.0.0 dated 2021-01-19
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Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Daniel Caetano [aut],
James Boyko [aut]
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Diff between hisse versions 1.9.10 dated 2020-10-28 and 1.9.13 dated 2021-01-19
hisse-1.9.10/hisse/man/plotHiSSE.Rd |only hisse-1.9.13/hisse/DESCRIPTION | 8 hisse-1.9.13/hisse/MD5 | 120 +++--- hisse-1.9.13/hisse/R/GetModelWeight.R | 6 hisse-1.9.13/hisse/R/geohisse.R | 17 hisse-1.9.13/hisse/R/geohisse.old.R | 2 hisse-1.9.13/hisse/R/geohisseLikelihood.R | 2 hisse-1.9.13/hisse/R/getModelAveTipRates.R | 29 + hisse-1.9.13/hisse/R/hisse.R | 9 hisse-1.9.13/hisse/R/hisse.old.R | 3 hisse-1.9.13/hisse/R/hisseNull4.old.R | 6 hisse-1.9.13/hisse/R/marginRecon.R | 193 +++++----- hisse-1.9.13/hisse/R/misse.R | 53 +- hisse-1.9.13/hisse/R/muhisse.R | 11 hisse-1.9.13/hisse/R/plotHisse.R | 100 +++-- hisse-1.9.13/hisse/inst/doc/Clade-specific-sampling.Rmd | 2 hisse-1.9.13/hisse/inst/doc/Clade-specific-sampling.pdf |binary hisse-1.9.13/hisse/inst/doc/GeoHiSSE-vignette.R | 12 hisse-1.9.13/hisse/inst/doc/GeoHiSSE-vignette.Rmd | 12 hisse-1.9.13/hisse/inst/doc/GeoHiSSE-vignette.pdf |binary hisse-1.9.13/hisse/inst/doc/MiSSE-vignette.R | 14 hisse-1.9.13/hisse/inst/doc/MiSSE-vignette.Rmd | 14 hisse-1.9.13/hisse/inst/doc/MiSSE-vignette.pdf |binary hisse-1.9.13/hisse/inst/doc/MuHiSSE-vignette.R | 6 hisse-1.9.13/hisse/inst/doc/MuHiSSE-vignette.Rmd | 6 hisse-1.9.13/hisse/inst/doc/MuHiSSE-vignette.pdf |binary hisse-1.9.13/hisse/inst/doc/hisse-fisse-type1-vignette.pdf |binary hisse-1.9.13/hisse/inst/doc/hisse-new-vignette.R | 6 hisse-1.9.13/hisse/inst/doc/hisse-new-vignette.Rmd | 6 hisse-1.9.13/hisse/inst/doc/hisse-new-vignette.pdf |binary hisse-1.9.13/hisse/inst/doc/hisse-vignette.R | 8 hisse-1.9.13/hisse/inst/doc/hisse-vignette.Rmd | 10 hisse-1.9.13/hisse/inst/doc/hisse-vignette.pdf |binary hisse-1.9.13/hisse/man/GetAICWeights.Rd | 4 hisse-1.9.13/hisse/man/MiSSEGreedy.Rd | 4 hisse-1.9.13/hisse/man/makeGeoHiSSELikelihood.Rd | 2 hisse-1.9.13/hisse/man/marginRecon.old.Rd | 4 hisse-1.9.13/hisse/man/marginReconGeoSSE.Rd | 4 hisse-1.9.13/hisse/man/marginReconGeoSSE.old.Rd | 4 hisse-1.9.13/hisse/man/marginReconHiSSE.Rd | 4 hisse-1.9.13/hisse/man/marginReconMiSSE.Rd | 4 hisse-1.9.13/hisse/man/marginReconMuHiSSE.Rd | 4 hisse-1.9.13/hisse/man/modelAveRates.Rd | 4 hisse-1.9.13/hisse/man/plotHisse.Rd |only hisse-1.9.13/hisse/tests/testthat/test_likelihood.R | 28 - hisse-1.9.13/hisse/vignettes/Clade-specific-sampling.Rmd | 2 hisse-1.9.13/hisse/vignettes/Clade-specific-sampling.html | 2 hisse-1.9.13/hisse/vignettes/GeoHiSSE-vignette.Rmd | 12 hisse-1.9.13/hisse/vignettes/GeoHiSSE-vignette.html | 14 hisse-1.9.13/hisse/vignettes/MiSSE-vignette.Rmd | 14 hisse-1.9.13/hisse/vignettes/MiSSE-vignette.html | 16 hisse-1.9.13/hisse/vignettes/MuHiSSE-vignette.Rmd | 6 hisse-1.9.13/hisse/vignettes/MuHiSSE-vignette.html | 6 hisse-1.9.13/hisse/vignettes/geohisse_recons_new_vignette.Rsave |binary hisse-1.9.13/hisse/vignettes/hisse-new-vignette.Rmd | 6 hisse-1.9.13/hisse/vignettes/hisse-new-vignette.html | 6 hisse-1.9.13/hisse/vignettes/hisse-vignette.Rmd | 10 hisse-1.9.13/hisse/vignettes/hisse-vignette.html | 10 hisse-1.9.13/hisse/vignettes/misse.vignette.Rsave |binary hisse-1.9.13/hisse/vignettes/testrecon1.Rsave |binary hisse-1.9.13/hisse/vignettes/testrecon2.Rsave |binary hisse-1.9.13/hisse/vignettes/testrecon3.Rsave |binary 62 files changed, 474 insertions(+), 351 deletions(-)
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from 'SCOPUS' (<https://scopus.com>),
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>)
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 3.0.3 dated 2020-09-28 and 3.0.4 dated 2021-01-19
bibliometrix-3.0.3/bibliometrix/R/biblio.R |only bibliometrix-3.0.3/bibliometrix/R/biblio_df.R |only bibliometrix-3.0.3/bibliometrix/R/garfield.R |only bibliometrix-3.0.3/bibliometrix/R/isiCollection.R |only bibliometrix-3.0.3/bibliometrix/R/management.R |only bibliometrix-3.0.3/bibliometrix/R/scientometrics.R |only bibliometrix-3.0.3/bibliometrix/R/scientometrics_text.R |only bibliometrix-3.0.3/bibliometrix/R/scopusCollection.R |only bibliometrix-3.0.3/bibliometrix/build/vignette.rds |only bibliometrix-3.0.3/bibliometrix/data/biblio.rda |only bibliometrix-3.0.3/bibliometrix/data/biblio_df.rda |only bibliometrix-3.0.3/bibliometrix/data/datalist |only bibliometrix-3.0.3/bibliometrix/data/garfield.rda |only bibliometrix-3.0.3/bibliometrix/data/isiCollection.rda |only bibliometrix-3.0.3/bibliometrix/data/management.rda |only bibliometrix-3.0.3/bibliometrix/data/scientometrics.rda |only bibliometrix-3.0.3/bibliometrix/data/scientometrics_text.rda |only bibliometrix-3.0.3/bibliometrix/data/scopusCollection.rda |only bibliometrix-3.0.3/bibliometrix/inst/doc |only bibliometrix-3.0.3/bibliometrix/man/biblio.Rd |only bibliometrix-3.0.3/bibliometrix/man/biblio_df.Rd |only bibliometrix-3.0.3/bibliometrix/man/garfield.Rd |only bibliometrix-3.0.3/bibliometrix/man/isiCollection.Rd |only bibliometrix-3.0.3/bibliometrix/man/management.Rd |only bibliometrix-3.0.3/bibliometrix/man/scientometrics.Rd |only bibliometrix-3.0.3/bibliometrix/man/scientometrics_text.Rd |only bibliometrix-3.0.3/bibliometrix/man/scopusCollection.Rd |only bibliometrix-3.0.3/bibliometrix/vignettes |only bibliometrix-3.0.4/bibliometrix/DESCRIPTION | 20 bibliometrix-3.0.4/bibliometrix/MD5 | 215 - bibliometrix-3.0.4/bibliometrix/NAMESPACE | 8 bibliometrix-3.0.4/bibliometrix/NEWS | 21 bibliometrix-3.0.4/bibliometrix/R/Hindex.R | 224 - bibliometrix-3.0.4/bibliometrix/R/authorProdOverTime.R | 11 bibliometrix-3.0.4/bibliometrix/R/bib2df.R | 8 bibliometrix-3.0.4/bibliometrix/R/biblioAnalysis.R | 14 bibliometrix-3.0.4/bibliometrix/R/biblioNetwork.R | 44 bibliometrix-3.0.4/bibliometrix/R/citations.R | 258 - bibliometrix-3.0.4/bibliometrix/R/cocMatrix.R | 64 bibliometrix-3.0.4/bibliometrix/R/conceptualStructure.R | 31 bibliometrix-3.0.4/bibliometrix/R/convert2df.R | 7 bibliometrix-3.0.4/bibliometrix/R/couplingMap.R |only bibliometrix-3.0.4/bibliometrix/R/csvScopus2df.R | 146 bibliometrix-3.0.4/bibliometrix/R/dimensions2df.R | 419 +- bibliometrix-3.0.4/bibliometrix/R/dominance.R | 132 bibliometrix-3.0.4/bibliometrix/R/duplicatedMatching.R | 6 bibliometrix-3.0.4/bibliometrix/R/fieldByYear.R | 224 - bibliometrix-3.0.4/bibliometrix/R/histNetwork.R | 2 bibliometrix-3.0.4/bibliometrix/R/histPlot.R | 7 bibliometrix-3.0.4/bibliometrix/R/isi2df.R | 19 bibliometrix-3.0.4/bibliometrix/R/keywordAssoc.R | 114 bibliometrix-3.0.4/bibliometrix/R/keywordGrowth.R | 136 bibliometrix-3.0.4/bibliometrix/R/localCitations.R | 111 bibliometrix-3.0.4/bibliometrix/R/lotka.R | 96 bibliometrix-3.0.4/bibliometrix/R/mergeDbSources.R | 164 bibliometrix-3.0.4/bibliometrix/R/metaTagExtraction.R | 8 bibliometrix-3.0.4/bibliometrix/R/net2VOSviewer.R | 2 bibliometrix-3.0.4/bibliometrix/R/networkPlot.R | 6 bibliometrix-3.0.4/bibliometrix/R/networkStat.R | 334 +- bibliometrix-3.0.4/bibliometrix/R/normalizeCItationScore.R |only bibliometrix-3.0.4/bibliometrix/R/normalizeSimilarity.R | 142 bibliometrix-3.0.4/bibliometrix/R/plot.bibliometrix.R | 2 bibliometrix-3.0.4/bibliometrix/R/plotThematicEvolution.R | 98 bibliometrix-3.0.4/bibliometrix/R/pubmed2df.R | 4 bibliometrix-3.0.4/bibliometrix/R/rpys.R | 2 bibliometrix-3.0.4/bibliometrix/R/sourceGrowth.R | 112 bibliometrix-3.0.4/bibliometrix/R/summary.bibliometrix.R | 468 +- bibliometrix-3.0.4/bibliometrix/R/summary.bibliometrix_netstat.R | 310 - bibliometrix-3.0.4/bibliometrix/R/tableTag.R | 2 bibliometrix-3.0.4/bibliometrix/R/termExtraction.R | 336 +- bibliometrix-3.0.4/bibliometrix/R/thematicEvolution.R | 290 - bibliometrix-3.0.4/bibliometrix/R/thematicMap.R | 66 bibliometrix-3.0.4/bibliometrix/R/threeFieldsPlot.R | 233 - bibliometrix-3.0.4/bibliometrix/R/timeslice.R | 84 bibliometrix-3.0.4/bibliometrix/R/zzz.R | 474 +- bibliometrix-3.0.4/bibliometrix/build/partial.rdb |binary bibliometrix-3.0.4/bibliometrix/data/bibtag.rda |binary bibliometrix-3.0.4/bibliometrix/data/countries.rda |binary bibliometrix-3.0.4/bibliometrix/data/stopwords.rda |binary bibliometrix-3.0.4/bibliometrix/inst/biblioshiny/rsconnect |only bibliometrix-3.0.4/bibliometrix/inst/biblioshiny/server.R | 1664 +++++++--- bibliometrix-3.0.4/bibliometrix/inst/biblioshiny/ui.R | 1061 +++++- bibliometrix-3.0.4/bibliometrix/man/Hindex.Rd | 4 bibliometrix-3.0.4/bibliometrix/man/KeywordGrowth.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/authorProdOverTime.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/biblioAnalysis.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/biblioNetwork.Rd | 7 bibliometrix-3.0.4/bibliometrix/man/citations.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/cocMatrix.Rd | 18 bibliometrix-3.0.4/bibliometrix/man/conceptualStructure.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/couplingMap.Rd |only bibliometrix-3.0.4/bibliometrix/man/dominance.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/duplicatedMatching.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/fieldByYear.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/histNetwork.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/histPlot.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/keywordAssoc.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/localCitations.Rd | 8 bibliometrix-3.0.4/bibliometrix/man/lotka.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/mergeDbSources.Rd | 4 bibliometrix-3.0.4/bibliometrix/man/metaTagExtraction.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/net2VOSviewer.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/networkPlot.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/networkStat.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/normalizeCitationScore.Rd |only bibliometrix-3.0.4/bibliometrix/man/normalizeSimilarity.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/plot.bibliometrix.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/plotThematicEvolution.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/rpys.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/sourceGrowth.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/summary.bibliometrix.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/summary.bibliometrix_netstat.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/tableTag.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/termExtraction.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/thematicEvolution.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/thematicMap.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/threeFieldsPlot.Rd | 2 bibliometrix-3.0.4/bibliometrix/man/timeslice.Rd | 2 118 files changed, 4895 insertions(+), 3403 deletions(-)
Title: Deal with Dependencies
Description: Tools to help manage dependencies during package
development. This can retrieve all dependencies that are used in R
files in the "R" directory, in Rmd files in "vignettes" directory and
in 'roxygen2' documentation of functions. There is a function to
update the Description file of your package and a function to create a
file with the R commands to install all dependencies of your package.
All functions to retrieve dependencies of R scripts and Rmd files can
be used independently of a package development.
Author: Sébastien Rochette [cre, aut] (<https://orcid.org/0000-0002-1565-9313>),
Vincent Guyader [aut] (<https://orcid.org/0000-0003-0671-9270>,
previous maintainer),
ThinkR [cph, fnd]
Maintainer: Sébastien Rochette <sebastien@thinkr.fr>
Diff between attachment versions 0.1.0 dated 2020-03-15 and 0.2.0 dated 2021-01-19
attachment-0.1.0/attachment/man/att_to_description.Rd |only attachment-0.2.0/attachment/DESCRIPTION | 45 attachment-0.2.0/attachment/MD5 | 65 attachment-0.2.0/attachment/NAMESPACE | 1 attachment-0.2.0/attachment/NEWS.md | 11 attachment-0.2.0/attachment/R/att_from_namespace.R | 7 attachment-0.2.0/attachment/R/att_from_rmds.R | 32 attachment-0.2.0/attachment/R/att_from_rscripts.R | 3 attachment-0.2.0/attachment/R/att_to_description.R | 100 - attachment-0.2.0/attachment/R/attachment-deprecated.R |only attachment-0.2.0/attachment/R/install_from_description.R | 4 attachment-0.2.0/attachment/README.md | 27 attachment-0.2.0/attachment/build/vignette.rds |binary attachment-0.2.0/attachment/inst/doc/fill-pkg-description.R | 109 - attachment-0.2.0/attachment/inst/doc/fill-pkg-description.Rmd | 34 attachment-0.2.0/attachment/inst/doc/fill-pkg-description.html | 932 +++++----- attachment-0.2.0/attachment/inst/dummypackage/R/my_mean.R | 2 attachment-0.2.0/attachment/man/att_amend_desc.Rd |only attachment-0.2.0/attachment/man/att_from_rmd.Rd | 9 attachment-0.2.0/attachment/man/att_from_rmds.Rd | 9 attachment-0.2.0/attachment/man/att_to_desc_from_is.Rd | 12 attachment-0.2.0/attachment/man/attachment-deprecated.Rd |only attachment-0.2.0/attachment/man/attachment-package.Rd | 5 attachment-0.2.0/attachment/man/extract_pkg_info.Rd |only attachment-0.2.0/attachment/man/find_remotes.Rd |only attachment-0.2.0/attachment/tests/testthat/f1.Rmd | 3 attachment-0.2.0/attachment/tests/testthat/f1Rmd | 174 - attachment-0.2.0/attachment/tests/testthat/f2.R | 99 - attachment-0.2.0/attachment/tests/testthat/f2R | 96 - attachment-0.2.0/attachment/tests/testthat/fake_namespace |only attachment-0.2.0/attachment/tests/testthat/insidermd.Rmd |only attachment-0.2.0/attachment/tests/testthat/test-att_from_namespace.R |only attachment-0.2.0/attachment/tests/testthat/test-create_dependencies_file.R | 1 attachment-0.2.0/attachment/tests/testthat/test-install_from_description.R | 36 attachment-0.2.0/attachment/tests/testthat/test-rmd.R | 61 attachment-0.2.0/attachment/tests/testthat/test-rscript.R | 3 attachment-0.2.0/attachment/tests/testthat/test-to-description.R | 87 attachment-0.2.0/attachment/vignettes/fill-pkg-description.Rmd | 34 38 files changed, 1225 insertions(+), 776 deletions(-)
Title: R Speaks 'Monolix'
Description: Provides methods for model building and model evaluation of mixed effects models using
'Monolix' <http://monolix.lixoft.com>. 'Monolix' is a software tool for nonlinear mixed effects
modeling that must have been installed in order to use 'Rsmlx'.
Among other tasks, 'Rsmlx' provides a powerful tool for automatic PK model building, performs
statistical tests for model assessment, bootstrap simulation and likelihood profiling for
computing confidence intervals. 'Rsmlx' also proposes several automatic covariate search methods for
mixed effects models.
Author: Marc Lavielle [aut, cre],
Jonathan Chauvin [ctb],
Clémence Pinaud [ctb]
Maintainer: Marc Lavielle <Marc.Lavielle@inria.fr>
Diff between Rsmlx versions 2.0.2 dated 2019-04-30 and 3.0.0 dated 2021-01-19
DESCRIPTION | 22 ++-- MD5 | 52 +++++----- R/RsmlxTools.R | 125 ++++++++++++++++++++++--- R/bootstrap.R | 219 ++++++++++++++++++++++++++++++++++++++++---- R/buildmlx.R | 7 - R/confintmlx.R | 80 ++++++++++++++-- R/covariateModelSelection.R | 3 R/covariateSearch.R | 2 R/errorModelSelection.R | 12 +- R/llp.R | 8 - R/mlxConnectors.R | 83 +++++++++++++++- R/newConnectors.R | 49 ++++++++- R/pkbuild.R | 6 - R/pkpopini.R | 4 R/setSettings.R | 2 R/testmlx.R | 12 +- R/whichPKmodel.R | 10 +- R/writeDataSmlx.R |only man/bootmlx.Rd | 16 ++- man/buildmlx.Rd | 23 +++- man/confintmlx.Rd | 14 ++ man/covariateSearch.Rd | 13 ++ man/initRsmlx.Rd | 16 ++- man/pkbuild.Rd | 13 ++ man/pkpopini.Rd | 10 +- man/testmlx.Rd | 9 + man/whichPKmodel.Rd | 4 man/writeDataSmlx.Rd |only 28 files changed, 679 insertions(+), 135 deletions(-)
Title: 'Rcpp' Interface to 'PostgreSQL'
Description: Fully 'DBI'-compliant 'Rcpp'-backed interface to
'PostgreSQL' <https://www.postgresql.org/>, an open-source relational
database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb] (Code for encoding vectors into strings derived
from RPostgreSQL)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RPostgres versions 1.3.0 dated 2021-01-07 and 1.3.1 dated 2021-01-19
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 16 ++++++++++++++++ R/PqConnection.R | 10 ++++++---- configure | 40 +++++++++++++++++++++------------------- tests/testthat/test-timezone.R | 2 ++ 6 files changed, 54 insertions(+), 32 deletions(-)
Title: Numerical Methods and Optimization in Finance
Description: Functions, examples and data from the first and
the second edition of "Numerical Methods and Optimization
in Finance" by M. Gilli, D. Maringer and E. Schumann
(2019, ISBN:978-0128150658). The package provides
implementations of optimisation heuristics (Differential
Evolution, Genetic Algorithms, Particle Swarm
Optimisation, Simulated Annealing and Threshold
Accepting), and other optimisation tools, such as grid
search and greedy search. There are also functions for
the valuation of financial instruments such as bonds and
options, for portfolio selection and functions that help
with stochastic simulations.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between NMOF versions 2.2-2 dated 2020-10-20 and 2.3-1 dated 2021-01-19
DESCRIPTION | 8 +- MD5 | 43 +++++++------ NEWS | 9 ++ R/market_data.R | 30 ++++++--- R/portfolio.R | 16 ++++- build/partial.rdb |only inst/doc/An_overview.pdf |binary inst/doc/DEnss.pdf |binary inst/doc/LSqueens.pdf |binary inst/doc/LSselect.pdf |binary inst/doc/PSlms.pdf |binary inst/doc/TAportfolio.pdf |binary inst/doc/portfolio.pdf |binary inst/doc/qTableEx.pdf |binary inst/doc/repair.pdf |binary inst/doc/vectorise.pdf |binary inst/tinytest/test_portfolio.R | 124 ++++++++++++++++++++-------------------- inst/unitTests/test_results.txt | 24 +++---- man/EuropeanCall.Rd | 19 +++--- man/French.Rd | 1 man/NS.Rd | 6 + man/NSf.Rd | 7 +- man/minCVaR.Rd | 14 +++- 23 files changed, 173 insertions(+), 128 deletions(-)
Title: Simulation of Longitudinal Data
Description: Simulation and visualization of complex
models for longitudinal data. The models are encoded using the model coding
language 'Mlxtran' and automatically converted into C++ codes.
That allows one to implement very easily complex ODE-based models and complex
statistical models, including mixed effects models, for continuous, count,
categorical, and time-to-event data.
Author: Marc Lavielle [aut, cre],
Esther Ilinca [ctb],
Raphael Kuate [ctb]
Maintainer: Marc Lavielle <Marc.Lavielle@inria.fr>
Diff between mlxR versions 4.1.3 dated 2020-06-02 and 4.2.0 dated 2021-01-19
DESCRIPTION | 6 ++-- MD5 | 30 ++++++++++----------- NAMESPACE | 1 R/commentModel.R | 34 ++++++++++++++++++++++++ R/convertmlx.R | 6 ++-- R/exposure.R | 5 ++- R/hgdata.R | 1 R/prctilemlx.R | 2 - R/processing_monolix.R | 4 +- R/readdatamlx.R | 29 ++++++++++++++------ R/shinymlx.R | 68 ++++++++++++++++++++++++++++++++++--------------- R/simulx.R | 4 -- R/translateIOV.R | 33 +++++++++++++++++++---- man/prctilemlx.Rd | 2 - man/readDatamlx.Rd | 11 +++++-- man/shinymlx.Rd | 2 - 16 files changed, 169 insertions(+), 69 deletions(-)
Title: Binned Data Analysis
Description: Algorithms developed for binned data analysis,
gene expression data analysis and
measurement error models for ordinal data analysis.
Author: Bin Wang <bwang831@gmail.com>
Maintainer: Bin Wang <bwang831@gmail.com>
Diff between bda versions 15.1.7 dated 2020-09-30 and 15.2.2 dated 2021-01-19
bda-15.1.7/bda/R/npr.R |only bda-15.2.2/bda/DESCRIPTION | 10 +++++----- bda-15.2.2/bda/MD5 | 12 ++++++++---- bda-15.2.2/bda/NAMESPACE | 6 +++++- bda-15.2.2/bda/R/bootPRO.R |only bda-15.2.2/bda/R/bootnpr.R |only bda-15.2.2/bda/R/fnm.R |only bda-15.2.2/bda/man/bootPRO.Rd |only bda-15.2.2/bda/man/fnm.Rd |only bda-15.2.2/bda/man/lpsmooth.Rd | 4 +++- 10 files changed, 21 insertions(+), 11 deletions(-)
Title: Line Maps
Description: Create maps made of lines. The package contains two functions:
linemap() and getgrid(). linemap() displays a map made of lines using a
data frame of gridded data. getgrid() transforms a set of polygons
(sf objects) into a suitable data frame for linemap().
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between linemap versions 0.1.0 dated 2017-09-15 and 0.2.0 dated 2021-01-19
linemap-0.1.0/linemap/data/bretagne.RData |only linemap-0.1.0/linemap/data/datalist |only linemap-0.1.0/linemap/data/france.RData |only linemap-0.1.0/linemap/data/occitanie.RData |only linemap-0.1.0/linemap/man/bretagne.Rd |only linemap-0.1.0/linemap/man/france.Rd |only linemap-0.1.0/linemap/man/occitanie.Rd |only linemap-0.2.0/linemap/DESCRIPTION | 25 +++++++++------- linemap-0.2.0/linemap/MD5 | 29 ++++++++---------- linemap-0.2.0/linemap/NEWS.md |only linemap-0.2.0/linemap/R/getgrid.R | 34 +++++++++++++-------- linemap-0.2.0/linemap/R/linemap.R | 3 + linemap-0.2.0/linemap/R/package.R | 37 +++++------------------ linemap-0.2.0/linemap/README.md | 42 +++++++++++++++++++-------- linemap-0.2.0/linemap/inst |only linemap-0.2.0/linemap/man/getgrid.Rd | 21 +++++++------ linemap-0.2.0/linemap/man/linemap-package.Rd | 14 +++++---- linemap-0.2.0/linemap/man/linemap.Rd | 15 +++++++-- linemap-0.2.0/linemap/man/popOcc.Rd | 4 +- linemap-0.2.0/linemap/tests |only 20 files changed, 127 insertions(+), 97 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-01 2.0.0
2020-10-30 1.0.2
2020-05-29 1.0.1
2020-05-05 1.0.0
2020-04-05 0.2.2
2020-03-17 0.2.1
2020-02-28 0.2.0
2020-01-14 0.1.1
2019-11-21 0.1.0
2019-08-28 0.0.9
2019-08-07 0.0.8
2019-06-05 0.0.7
2019-03-20 0.0.6
2019-01-21 0.0.5
2018-12-01 0.0.4
2018-10-05 0.0.3
2018-07-19 0.0.2
2018-07-05 0.0.1
Title: Tools for 2D and 3D Plots of Single and Multi-Objective
Linear/Integer Programming Models
Description: Make 2D and 3D plots of linear programming (LP),
integer linear programming (ILP), or mixed integer linear programming (MILP) models
with up to three objectives. Plots of both the solution and criterion space are possible.
For instance the non-dominated (Pareto) set for bi-objective LP/ILP/MILP programming models
(see vignettes for an overview). The package also contains an function for checking if a point
is inside the convex hull.
Author: Lars Relund Nielsen [aut, cre]
(<https://orcid.org/0000-0002-4802-3071>)
Maintainer: Lars Relund Nielsen <lars@relund.dk>
Diff between gMOIP versions 1.4.3 dated 2020-02-20 and 1.4.6 dated 2021-01-19
gMOIP-1.4.3/gMOIP/inst/doc/bi-objective.R |only gMOIP-1.4.3/gMOIP/inst/doc/bi-objective.Rmd |only gMOIP-1.4.3/gMOIP/inst/doc/bi-objective.html |only gMOIP-1.4.3/gMOIP/inst/doc/polytope_3d.R |only gMOIP-1.4.3/gMOIP/inst/doc/polytope_3d.Rmd |only gMOIP-1.4.3/gMOIP/inst/doc/polytope_3d.html |only gMOIP-1.4.3/gMOIP/inst/examples/old_examples.R |only gMOIP-1.4.3/gMOIP/tests |only gMOIP-1.4.3/gMOIP/vignettes/bi-objective.Rmd |only gMOIP-1.4.3/gMOIP/vignettes/polytope_3d.Rmd |only gMOIP-1.4.6/gMOIP/DESCRIPTION | 20 gMOIP-1.4.6/gMOIP/MD5 | 169 gMOIP-1.4.6/gMOIP/NAMESPACE | 71 gMOIP-1.4.6/gMOIP/NEWS.md | 80 gMOIP-1.4.6/gMOIP/R/functions.R | 737 - gMOIP-1.4.6/gMOIP/R/hull.R | 1050 +- gMOIP-1.4.6/gMOIP/R/ndset.R | 1653 ++- gMOIP-1.4.6/gMOIP/R/package_doc.R | 11 gMOIP-1.4.6/gMOIP/R/plot.R | 3549 ++++--- gMOIP-1.4.6/gMOIP/build/vignette.rds |binary gMOIP-1.4.6/gMOIP/inst/doc/bi-objective_2x.R |only gMOIP-1.4.6/gMOIP/inst/doc/bi-objective_2x.Rmd |only gMOIP-1.4.6/gMOIP/inst/doc/bi-objective_2x.html |only gMOIP-1.4.6/gMOIP/inst/doc/bi-objective_3x_ex1.R |only gMOIP-1.4.6/gMOIP/inst/doc/bi-objective_3x_ex1.Rmd |only gMOIP-1.4.6/gMOIP/inst/doc/bi-objective_3x_ex1.html |only gMOIP-1.4.6/gMOIP/inst/doc/intro.R |only gMOIP-1.4.6/gMOIP/inst/doc/intro.Rmd |only gMOIP-1.4.6/gMOIP/inst/doc/intro.html |only gMOIP-1.4.6/gMOIP/inst/doc/polytope_2d.R | 521 - gMOIP-1.4.6/gMOIP/inst/doc/polytope_2d.Rmd | 633 - gMOIP-1.4.6/gMOIP/inst/doc/polytope_2d.html | 1198 +- gMOIP-1.4.6/gMOIP/inst/doc/polytope_3d_ex1.R |only gMOIP-1.4.6/gMOIP/inst/doc/polytope_3d_ex1.Rmd |only gMOIP-1.4.6/gMOIP/inst/doc/polytope_3d_ex1.html |only gMOIP-1.4.6/gMOIP/inst/doc/tri-objective.R |only gMOIP-1.4.6/gMOIP/inst/doc/tri-objective.Rmd |only gMOIP-1.4.6/gMOIP/inst/doc/tri-objective.html |only gMOIP-1.4.6/gMOIP/inst/examples/3d_interactive.Rmd | 88 gMOIP-1.4.6/gMOIP/inst/examples/3d_interactive.html | 9600 ++++++++++---------- gMOIP-1.4.6/gMOIP/inst/examples/ex_criterion.R | 449 gMOIP-1.4.6/gMOIP/inst/examples/ex_polytope.R | 607 - gMOIP-1.4.6/gMOIP/man/addNDSet.Rd |only gMOIP-1.4.6/gMOIP/man/addNDSet2D.Rd | 12 gMOIP-1.4.6/gMOIP/man/addRays.Rd | 6 gMOIP-1.4.6/gMOIP/man/binaryPoints.Rd |only gMOIP-1.4.6/gMOIP/man/classifyNDSet.Rd | 14 gMOIP-1.4.6/gMOIP/man/convexHull.Rd | 8 gMOIP-1.4.6/gMOIP/man/criterionPoints.Rd | 10 gMOIP-1.4.6/gMOIP/man/df2String.Rd | 2 gMOIP-1.4.6/gMOIP/man/dot-checkPts.Rd | 7 gMOIP-1.4.6/gMOIP/man/dot-getRanges.Rd |only gMOIP-1.4.6/gMOIP/man/dot-mToDirection.Rd |only gMOIP-1.4.6/gMOIP/man/dot-sizeM.Rd |only gMOIP-1.4.6/gMOIP/man/figures |only gMOIP-1.4.6/gMOIP/man/finalize3D.Rd | 13 gMOIP-1.4.6/gMOIP/man/gMOIP-package.Rd | 8 gMOIP-1.4.6/gMOIP/man/gMOIPTheme.Rd |only gMOIP-1.4.6/gMOIP/man/genNDSet.Rd | 27 gMOIP-1.4.6/gMOIP/man/genSample.Rd | 10 gMOIP-1.4.6/gMOIP/man/getTexture.Rd |only gMOIP-1.4.6/gMOIP/man/inHull.Rd | 23 gMOIP-1.4.6/gMOIP/man/ini3D.Rd | 15 gMOIP-1.4.6/gMOIP/man/loadView.Rd | 10 gMOIP-1.4.6/gMOIP/man/mergeLists.Rd | 2 gMOIP-1.4.6/gMOIP/man/plotCones2D.Rd |only gMOIP-1.4.6/gMOIP/man/plotCones3D.Rd | 11 gMOIP-1.4.6/gMOIP/man/plotCriterion2D.Rd | 5 gMOIP-1.4.6/gMOIP/man/plotHull2D.Rd | 50 gMOIP-1.4.6/gMOIP/man/plotHull3D.Rd | 40 gMOIP-1.4.6/gMOIP/man/plotMTeX3D.Rd |only gMOIP-1.4.6/gMOIP/man/plotNDSet2D.Rd | 17 gMOIP-1.4.6/gMOIP/man/plotPlane3D.Rd | 37 gMOIP-1.4.6/gMOIP/man/plotPoints3D.Rd | 14 gMOIP-1.4.6/gMOIP/man/plotPolygon3D.Rd |only gMOIP-1.4.6/gMOIP/man/plotPolytope.Rd | 72 gMOIP-1.4.6/gMOIP/man/plotPolytope2D.Rd | 23 gMOIP-1.4.6/gMOIP/man/plotPolytope3D.Rd | 29 gMOIP-1.4.6/gMOIP/man/plotRectangle3D.Rd | 11 gMOIP-1.4.6/gMOIP/man/plotTeX3D.Rd |only gMOIP-1.4.6/gMOIP/man/plotTitleTeX3D.Rd |only gMOIP-1.4.6/gMOIP/man/pngSize.Rd |only gMOIP-1.4.6/gMOIP/man/saveView.Rd | 6 gMOIP-1.4.6/gMOIP/man/texToPng.Rd |only gMOIP-1.4.6/gMOIP/vignettes/bi-objective_2x.Rmd |only gMOIP-1.4.6/gMOIP/vignettes/bi-objective_3x_ex1.Rmd |only gMOIP-1.4.6/gMOIP/vignettes/intro.Rmd |only gMOIP-1.4.6/gMOIP/vignettes/polytope_2d.Rmd | 633 - gMOIP-1.4.6/gMOIP/vignettes/polytope_3d_ex1.Rmd |only gMOIP-1.4.6/gMOIP/vignettes/tri-objective.Rmd |only 90 files changed, 11426 insertions(+), 10125 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include a) Tsagris M.T., Preston S. and Wood A.T.A. (2011) A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis. b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519--534. c) Tsagris M. (2015). A novel, divergence based, regression for compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444. d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Statistics, 6(2):47--57. e) Tsagris M., Preston S. and Wood A.T.A. (2016). Improved supervised classification for compositional data using the alpha-transformation. Journal of Classification, 33(2):243--261. <doi:10.1007/s00357-016-9207-5>. f) Tsagris M., Preston S. and Wood A.T.A. (2017). Nonparametric hypothesis testing for equality of means on the simplex. Journal of Statistical Computation and Simulation, 87(2): 406--422. <doi:10.1080/00949655.2016.1216554> g) Tsagris M. and Stewart C. (2018). A Dirichlet regression model for compositional data with zeros. Lobachevskii Journal of Mathematics, 39(3): 398--412. <doi:10.1134/S1995080218030198>. h) Alenazi A. (2019). Regression for compositional data with compositional data as predictor variables with or without zero values. Journal of Data Science, 17(1): 219--238. <doi:10.6339/JDS.201901_17(1).0010>. i) Tsagris M. and Stewart C. (2020). A folded model for compositional data analysis. Australian and New Zealand Journal of Statistics, 62(2):249--277. <doi:10.1111/anzs.12289>. j) Tsagris M., Alenazi A. and Stewart C. (2020). The alpha-k-NN regression for compositional data. <arXiv:2002.05137>. We further include functions for percentages (or proportions).
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 4.2 dated 2020-11-12 and 4.3 dated 2021-01-19
Compositional-4.2/Compositional/R/js.prop.reg.R |only Compositional-4.3/Compositional/DESCRIPTION | 15 +- Compositional-4.3/Compositional/MD5 | 79 ++++++----- Compositional-4.3/Compositional/NAMESPACE | 6 Compositional-4.3/Compositional/R/aknn.reg.R | 4 Compositional-4.3/Compositional/R/compknn.tune.R | 4 Compositional-4.3/Compositional/R/cv.olscompcomp.R |only Compositional-4.3/Compositional/R/diri.contour.R | 5 Compositional-4.3/Compositional/R/fd.contour.R |only Compositional-4.3/Compositional/R/fold.contour.R |only Compositional-4.3/Compositional/R/frechet2.R | 31 +--- Compositional-4.3/Compositional/R/js.compreg.R | 25 +-- Compositional-4.3/Compositional/R/kent.contour.R |only Compositional-4.3/Compositional/R/kl.compreg.R | 14 - Compositional-4.3/Compositional/R/norm.contour.R | 27 +-- Compositional-4.3/Compositional/R/ols.compcomp.R |only Compositional-4.3/Compositional/R/ols.compreg.R | 35 ++-- Compositional-4.3/Compositional/R/probout.R |only Compositional-4.3/Compositional/R/symkl.compreg.R | 23 +-- Compositional-4.3/Compositional/R/ternary.R | 16 +- Compositional-4.3/Compositional/R/ternary.reg.R |only Compositional-4.3/Compositional/R/unitweib.reg.R |only Compositional-4.3/Compositional/man/Compositional-package.Rd | 4 Compositional-4.3/Compositional/man/a.est.Rd | 3 Compositional-4.3/Compositional/man/alfa.Rd | 7 Compositional-4.3/Compositional/man/alfa.rda.Rd | 2 Compositional-4.3/Compositional/man/alpha.mle.Rd | 5 Compositional-4.3/Compositional/man/compppr.tune.Rd | 17 +- Compositional-4.3/Compositional/man/cv.olscompcomp.Rd |only Compositional-4.3/Compositional/man/cv.tflr.Rd | 4 Compositional-4.3/Compositional/man/fd.contour.Rd |only Compositional-4.3/Compositional/man/fd.density.Rd | 9 - Compositional-4.3/Compositional/man/fd.est.Rd | 13 - Compositional-4.3/Compositional/man/fold.contour.Rd |only Compositional-4.3/Compositional/man/frechet2.Rd | 12 - Compositional-4.3/Compositional/man/kent.contour.Rd |only Compositional-4.3/Compositional/man/kl.alfapcr.Rd | 4 Compositional-4.3/Compositional/man/kl.compreg.Rd | 4 Compositional-4.3/Compositional/man/norm.contour.Rd | 19 +- Compositional-4.3/Compositional/man/ols.compcomp.Rd |only Compositional-4.3/Compositional/man/ols.compreg.Rd | 8 - Compositional-4.3/Compositional/man/ols.prop.reg.Rd | 10 - Compositional-4.3/Compositional/man/probout.Rd |only Compositional-4.3/Compositional/man/rfd.Rd | 9 - Compositional-4.3/Compositional/man/rfolded.Rd | 7 Compositional-4.3/Compositional/man/ternary.Rd | 39 ++--- Compositional-4.3/Compositional/man/ternary.reg.Rd |only Compositional-4.3/Compositional/man/tflr.Rd | 4 Compositional-4.3/Compositional/man/unitweib.reg.Rd |only 49 files changed, 230 insertions(+), 234 deletions(-)
Title: Portfolio Management with R
Description: Functions and examples for 'Portfolio
Management with R': backtesting investment and
trading strategies, computing profit/loss and
returns, analysing trades, handling lists of
transactions, reporting, and more.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between PMwR versions 0.15-0 dated 2020-10-19 and 0.16-0 dated 2021-01-19
PMwR-0.15-0/PMwR/data/DAX.csv |only PMwR-0.15-0/PMwR/data/REXP.csv |only PMwR-0.16-0/PMwR/ChangeLog | 70 +++++ PMwR-0.16-0/PMwR/DESCRIPTION | 10 PMwR-0.16-0/PMwR/MD5 | 54 ++-- PMwR-0.16-0/PMwR/NEWS | 30 ++ PMwR-0.16-0/PMwR/R/div_adjust.R | 15 - PMwR-0.16-0/PMwR/R/internal.R | 22 + PMwR-0.16-0/PMwR/R/returns.R | 155 +++++++++--- PMwR-0.16-0/PMwR/R/unit_prices.R | 73 +++++ PMwR-0.16-0/PMwR/build/vignette.rds |binary PMwR-0.16-0/PMwR/data/DAX.csv.gz |only PMwR-0.16-0/PMwR/data/REXP.csv.gz |only PMwR-0.16-0/PMwR/inst/CITATION | 8 PMwR-0.16-0/PMwR/inst/doc/An_overview_of_PMwR.pdf |binary PMwR-0.16-0/PMwR/inst/doc/Computing_returns.pdf |binary PMwR-0.16-0/PMwR/inst/doc/Drawdowns_streaks.pdf |binary PMwR-0.16-0/PMwR/inst/doc/FinTeX.pdf |binary PMwR-0.16-0/PMwR/inst/doc/pl_open_positions.pdf |binary PMwR-0.16-0/PMwR/inst/doc/q32.pdf |binary PMwR-0.16-0/PMwR/inst/tinytest/test_btest_prices.R | 2 PMwR-0.16-0/PMwR/inst/tinytest/test_div_adjust.R | 76 +++++ PMwR-0.16-0/PMwR/inst/tinytest/test_returns_portfolio.R | 41 ++- PMwR-0.16-0/PMwR/inst/tinytest/test_returns_rebalance.R | 203 +++++++++++++++- PMwR-0.16-0/PMwR/inst/tinytest/test_split_adjust.R | 17 + PMwR-0.16-0/PMwR/inst/tinytest/test_unit_prices.R | 29 ++ PMwR-0.16-0/PMwR/man/NAVseries.Rd | 36 ++ PMwR-0.16-0/PMwR/man/adjust-series.Rd | 33 +- PMwR-0.16-0/PMwR/man/returns.Rd | 54 ++-- PMwR-0.16-0/PMwR/man/unit_prices.Rd | 65 +++-- 30 files changed, 847 insertions(+), 146 deletions(-)
Title: The Flexible Spatial Scan Statistic
Description: Functions for the detection of spatial clusters using the flexible
spatial scan statistic developed by Tango and Takahashi (2005) <doi:10.1186/1476-072X-4-11>.
This package implements a wrapper for the C routine used in the FleXScan 3.1.2
<https://sites.google.com/site/flexscansoftware/home> developed by Takahashi,
Yokoyama, and Tango.
Author: Takahiro Otani,
Kunihiko Takahashi
Maintainer: Takahiro Otani <otani@med.nagoya-cu.ac.jp>
Diff between rflexscan versions 0.3.1 dated 2020-08-24 and 0.4.0 dated 2021-01-19
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/RcppExports.R | 15 +++++++++++++++ R/flexscan.R | 11 +++++++++-- man/rflexscan.Rd | 7 ++++++- man/runFleXScan.Rd |only src/flscan312.cpp | 35 +++++++++++++++++++++++++++++++---- 9 files changed, 79 insertions(+), 18 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
George Athanasopoulos [ctb],
David Holt [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.2.1 dated 2020-09-03 and 0.3.0 dated 2021-01-19
DESCRIPTION | 12 MD5 | 89 +-- NAMESPACE | 16 NEWS.md | 50 + R/accessors.R | 4 R/accuracy.R | 87 ++- R/aggregate.R | 19 R/box_cox.R | 30 - R/dplyr-fable.R | 7 R/dplyr-mable.R | 7 R/fable.R | 8 R/features.R | 7 R/fitted.R | 45 + R/forecast.R | 74 +- R/generate.R | 41 + R/interpolate.R | 11 R/mable.R | 31 - R/model.R | 7 R/parse.R | 42 + R/plot.R | 73 +- R/reconciliation.R | 189 ++++++- R/refit.R | 11 R/report.R | 4 R/stream.R | 8 R/utils.R | 75 ++ R/vctrs-fable.R | 10 R/vctrs-mable.R | 4 build/fabletools.pdf |binary inst/WORDLIST | 2 inst/doc/extension_models.html | 906 +++++++++++++--------------------- man/agg_vec.Rd | 9 man/autoplot.dcmp_ts.Rd | 4 man/directional_accuracy_measures.Rd |only man/distribution_accuracy_measures.Rd | 11 man/fabletools-package.Rd | 1 man/features.Rd | 7 man/fitted.mdl_df.Rd | 5 man/forecast.Rd | 13 man/generate.mdl_df.Rd | 15 man/middle_out.Rd |only man/model.Rd | 10 man/point_accuracy_measures.Rd | 2 man/scenarios.Rd |only man/skill_score.Rd | 3 tests/testthat/Rplots.pdf |binary tests/testthat/test-accuracy.R | 57 +- tests/testthat/test-parser.R | 69 +- 47 files changed, 1283 insertions(+), 792 deletions(-)
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined
convex programming (DCP) as described in Fu, Narasimhan, and Boyd
(2020, <doi:10.18637/jss.v094.i14>). It allows the user to
formulate convex optimization problems in a natural way following
mathematical convention and DCP rules. The system analyzes the
problem, verifies its convexity, converts it into a canonical
form, and hands it off to an appropriate solver to obtain the
solution. Interfaces to solvers on CRAN and elsewhere are
provided, both commercial and open source.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
David W Kang [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb],
Paul Kunsberg Rosenfield [ctb]
Maintainer: Anqi Fu <anqif@stanford.edu>
Diff between CVXR versions 1.0-8 dated 2020-09-13 and 1.0-9 dated 2021-01-19
DESCRIPTION | 8 MD5 | 18 NEWS.md | 6 R/conic_solvers.R | 12 R/elementwise.R | 25 build/vignette.rds |binary inst/doc/cvxr_intro.html | 1188 +++++++++++++------------------ inst/doc/version1.html | 518 +++---------- man/Power-class.Rd | 7 tests/testthat/test-g00-constant_atoms.R | 56 + 10 files changed, 760 insertions(+), 1078 deletions(-)
Title: Change-in-Estimate Approach to Assess Confounding Effects
Description: Applies the change-in-effect estimate method to assess confounding
effects in medical and epidemiological research (Greenland & Pearce (2016)
<doi:10.1146/annurev-publhealth-031914-122559> ). It starts with a crude model
including only the outcome and exposure variables. At each of the subsequent
steps, one variable which creates the largest change among the remaining variables
is selected. This process is repeated until all variables have been entered into
the model (Wang Z (2007) <doi:10.1177/1536867X0700700203> ). Currently, the 'chest'
package has functions for linear regression, logistic regression, negative
binomial regression, Cox proportional hazards model and conditional logistic
regression.
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <zhiqiang.wang@menzies.edu.au>
Diff between chest versions 0.3.4 dated 2020-09-30 and 0.3.5 dated 2021-01-19
DESCRIPTION | 8 - MD5 | 12 +- NEWS.md | 3 R/chest_glm.R | 4 R/chest_speedglm.R | 63 +++++++++------ build/vignette.rds |binary inst/doc/chest-vignette.html | 176 ++++++++++++++++++++++++------------------- 7 files changed, 151 insertions(+), 115 deletions(-)
Title: Send Messages, Images, R Objects and Files to 'Slack'
Channels/Users
Description: 'Slack' <https://slack.com/> provides a service for teams to
collaborate by sharing messages, images, links, files and more. Functions are provided
that make it possible to interact with the 'Slack' platform 'API'. When
you need to share information or data from R, rather than resort to copy/
paste in e-mails or other services like 'Skype' <https://www.skype.com/>, you
can use this package to send well-formatted output from multiple R objects and
expressions to all teammates at the same time with little effort. You can also
send images from the current graphics device, R objects, and upload files.
Author: Bob Rudis [aut, cre], Jay Jacobs [ctb], David Severski [ctb],
Quinn Weber [ctb], Konrad Karczewski [ctb], Shinya Uryu [ctb],
Gregory Jefferis [ctb], Ed Niles [ctb], Rick Saporta [ctb],
Jonathan Sidi [aut, ctb], Matt Kaye [ctb], Xinye Li [ctb]
Maintainer: Matt Kaye <mrkaye97@gmail.com>
Diff between slackr versions 1.4.2 dated 2016-07-20 and 2.0.1 dated 2021-01-19
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Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, and PDF file formats. The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.0.6 dated 2020-11-20 and 1.1.2 dated 2021-01-19
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Title: Efficient and Publishing-Oriented Workflow for Psychological
Science
Description: The main goal of the psycho package is to provide tools for psychologists, neuropsychologists and neuroscientists,
to facilitate and speed up the time spent on data analysis. It aims at supporting best practices and tools to format the output
of statistical methods to directly paste them into a manuscript, ensuring statistical reporting standardization and conformity.
Author: Dominique Makowski [aut, cre, cph]
(<https://orcid.org/0000-0001-5375-9967>),
Hugo Najberg [ctb],
Viliam Simko [ctb],
Sasha Epskamp [rev] (Sasha reviewed the package for JOSS, see
https://github.com/openjournals/joss-reviews/issues/470)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between psycho versions 0.5.0 dated 2020-01-22 and 0.6.1 dated 2021-01-19
DESCRIPTION | 14 ++-- MD5 | 48 ++++++++-------- NAMESPACE | 2 R/crawford.test.R | 6 +- R/crawford_dissociation.test.R | 2 R/dprime.R | 17 ++++- R/mellenbergh.test.R | 4 - R/startup_message.R | 6 +- README.md | 4 - build/vignette.rds |binary inst/doc/bayesian.html | 65 +++++++++++++++++++++- inst/doc/overview.Rmd | 4 - inst/doc/overview.html | 120 +++++++++++++++++++++++++++++++---------- man/affective.Rd | 6 +- man/emotion.Rd | 6 +- man/find_combinations.Rd | 36 ++++++------ man/golden.Rd | 44 +++++++-------- man/is.psychobject.Rd | 26 ++++---- man/percentile.Rd | 40 ++++++------- man/percentile_to_z.Rd | 40 ++++++------- man/plot.psychobject.Rd | 36 ++++++------ man/print.psychobject.Rd | 36 ++++++------ man/remove_empty_cols.Rd | 32 +++++----- man/values.Rd | 32 +++++----- vignettes/overview.Rmd | 4 - 25 files changed, 381 insertions(+), 249 deletions(-)
Title: A 'rmarkdown' Template that Can be Highly Customized
Description: A 'rmarkdown' template that supports company logo, contact info,
watermarks and more. Currently restricted to 'Latex'/'Markdown'; a similar
'HTML' theme will be added in the future.
Author: Hao Zhu [aut, cre] (<https://orcid.org/0000-0002-3386-6076>),
Timothy Tsai [aut] (<https://orcid.org/0000-0002-0274-8042>),
Thomas Travison [aut],
Mikhail Popov [ctb]
Maintainer: Hao Zhu <haozhu233@gmail.com>
Diff between memor versions 0.2.2 dated 2020-05-10 and 0.2.3 dated 2021-01-19
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- README.md | 2 +- build/vignette.rds |binary inst/doc/memor.R | 4 ++-- inst/doc/memor.Rmd | 1 - inst/doc/memor.pdf |binary inst/rmarkdown/templates/memor/resources/memor.tex | 20 ++++++++++++-------- vignettes/memor.Rmd | 1 - 9 files changed, 26 insertions(+), 24 deletions(-)
Title: Client for Dataverse 4 Repositories
Description: Provides access to Dataverse APIs <https://dataverse.org/> (versions 4-5),
enabling data search, retrieval, and deposit. For Dataverse versions <= 3.0,
use the archived 'dvn' package <https://cran.r-project.org/package=dvn>.
Author: Will Beasley [aut, cre] (<https://orcid.org/0000-0002-5613-5006>),
Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>),
Shiro Kuriwaki [aut] (<https://orcid.org/0000-0002-5687-2647>),
Philip Durbin [aut] (<https://orcid.org/0000-0002-9528-9470>),
Sebastian Karcher [aut] (<https://orcid.org/0000-0001-8249-7388>),
Jan Kanis [ctb]
Maintainer: Will Beasley <wibeasley@hotmail.com>
Diff between dataverse versions 0.2.0 dated 2017-06-15 and 0.3.0 dated 2021-01-19
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Title: Bayesian Approach for MTAR Models with Missing Data
Description: Implements parameter estimation using a Bayesian approach for Multivariate Threshold Autoregressive (MTAR) models with missing data using Markov Chain Monte Carlo methods. Performs the simulation of MTAR processes (mtarsim()), estimation of matrix parameters and the threshold values (mtarns()), identification of the autoregressive orders using Bayesian variable selection (mtarstr()), identification of the number of regimes using Metropolised Carlin and Chib (mtarnumreg()) and estimate missing data, coefficients and covariance matrices conditional on the autoregressive orders, the threshold values and the number of regimes (mtarmissing()). Calderon and Nieto (2017) <doi:10.1080/03610926.2014.990758>.
Author: Valeria Bejarano Salcedo <vbejaranos@unal.edu.co>,
Sergio Alejandro Calderon Villanueva <sacalderonv@unal.edu.co>
Andrey Duvan Rincon Torres <adrincont@unal.edu.co>
Maintainer: Andrey Duvan Rincon Torres <adrincont@unal.edu.co>
Diff between BMTAR versions 0.1.0 dated 2020-06-09 and 0.1.1 dated 2021-01-19
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