Title: Structural Equation Modeling and Confirmatory Network Analysis
Description: Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between psychonetrics versions 0.8 dated 2020-10-26 and 0.8.1 dated 2021-01-28
DESCRIPTION | 15 MD5 | 70 - NAMESPACE | 347 +++---- NEWS | 187 ++-- R/01_classes.R | 298 +++--- R/02_algebrahelpers_spectralshift.R | 50 - R/03_modelformation_matrixSetup_lambda.R | 264 ++--- R/03_modelformation_matrixSetup_sigma.R | 102 +- R/03_modelformation_samplestats_norawts.R | 1136 ++++++++++++------------- R/04_generalfit_loglikelihood_gauss.R | 232 ++--- R/05_MLestimator_fit_Gauss.R | 36 R/09_modelmodifivation_emergencystart.R | 156 +-- R/14_varcov_implied.R | 92 +- R/15_lvm_identify.R | 436 ++++----- R/16_var1_derivatives.R | 362 ++++---- R/16_var1_implied.R | 150 +-- R/RcppExports.R | 1326 +++++++++++++++--------------- R/a_models_latentgrowth.R | 198 ++-- R/a_models_lvm.R | 846 +++++++++---------- R/a_models_meta_varcov.R | 1298 ++++++++++++++--------------- R/b_modelexpansions_addMIs.R | 450 +++++----- R/c_runmodel.R | 978 +++++++++++----------- R/e_modelmodifications_partialprune.R | 378 ++++---- R/f_conveneince_fake_optimr.R |only R/f_conveneince_fakeoptimr.R |only R/f_conveneince_generate.R | 4 R/f_convenience_ergodicity.R | 21 R/f_convenience_factorscores.R | 164 +-- R/f_convenience_getmatrix.R | 72 - R/h_modelsearch.R | 874 +++++++++---------- build/partial.rdb |binary data/Jonas.RData |binary man/factorscores.Rd | 56 - man/latentgrowth.Rd | 146 +-- man/lvm_family.Rd | 1082 ++++++++++++------------ man/partialprune.Rd | 84 - man/runmodel.Rd | 156 +-- 37 files changed, 6037 insertions(+), 6029 deletions(-)
Title: Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Description: Weighted network visualization and analysis, as well as Gaussian graphical model computation. See Epskamp et al. (2012) <doi:10.18637/jss.v048.i04>.
Author: Sacha Epskamp [aut, cre],
Giulio Costantini [aut],
Jonas Haslbeck [aut],
Adela Isvoranu [aut],
Angelique O. J. Cramer [ctb],
Lourens J. Waldorp [ctb],
Verena D. Schmittmann [ctb],
Denny Borsboom [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between qgraph versions 1.6.5 dated 2020-02-21 and 1.6.9 dated 2021-01-28
qgraph-1.6.5/qgraph/man/as.ggraph.Rd |only qgraph-1.6.5/qgraph/man/qgraphAnnotate.Rd |only qgraph-1.6.9/qgraph/DESCRIPTION | 13 - qgraph-1.6.9/qgraph/MD5 | 30 ++-- qgraph-1.6.9/qgraph/NAMESPACE | 15 -- qgraph-1.6.9/qgraph/NEWS | 18 ++ qgraph-1.6.9/qgraph/R/PLOT.R | 7 - qgraph-1.6.9/qgraph/R/as_ggraph.R | 126 +++++++++--------- qgraph-1.6.9/qgraph/R/centrality.R | 25 +++ qgraph-1.6.9/qgraph/R/cor_auto.R | 3 qgraph-1.6.9/qgraph/R/getWmat.R | 8 + qgraph-1.6.9/qgraph/R/qgraph.R | 80 +++++++---- qgraph-1.6.9/qgraph/R/qgraphAnnotate.R | 155 +++++++++++----------- qgraph-1.6.9/qgraph/R/qgraphD3.R | 206 +++++++++++++++--------------- qgraph-1.6.9/qgraph/inst/CITATION | 45 +++--- qgraph-1.6.9/qgraph/man/centrality.Rd | 3 qgraph-1.6.9/qgraph/src/layout_rcpp.cpp | 3 17 files changed, 398 insertions(+), 339 deletions(-)
Title: Access the Trello API
Description: An R client for the Trello API. Supports free-tier features such as
access to private boards, creating and updating cards and other resources,
and downloading data in a structured way.
Author: Jakub Chromec [aut, cre]
Maintainer: Jakub Chromec <chromec.jakub@gmail.com>
Diff between trelloR versions 0.1.0 dated 2016-09-22 and 0.7.0 dated 2021-01-28
trelloR-0.1.0/trelloR/R/trello_fix.R |only trelloR-0.1.0/trelloR/R/trello_get.R |only trelloR-0.1.0/trelloR/R/trello_get_token.R |only trelloR-0.1.0/trelloR/R/trello_search.R |only trelloR-0.1.0/trelloR/inst/doc/R_API_for_Trello.R |only trelloR-0.1.0/trelloR/inst/doc/R_API_for_Trello.Rmd |only trelloR-0.1.0/trelloR/inst/doc/R_API_for_Trello.html |only trelloR-0.1.0/trelloR/man/get_flat.Rd |only trelloR-0.1.0/trelloR/man/trello_get.Rd |only trelloR-0.1.0/trelloR/man/trello_get_token.Rd |only trelloR-0.1.0/trelloR/man/trello_search.Rd |only trelloR-0.1.0/trelloR/vignettes/R_API_for_Trello.Rmd |only trelloR-0.7.0/trelloR/DESCRIPTION | 40 ++--- trelloR-0.7.0/trelloR/MD5 | 115 ++++++++++----- trelloR-0.7.0/trelloR/NAMESPACE | 70 +++++++-- trelloR-0.7.0/trelloR/R/create_resource.R |only trelloR-0.7.0/trelloR/R/create_wrappers.R |only trelloR-0.7.0/trelloR/R/custom_fields.R |only trelloR-0.7.0/trelloR/R/delete_resource.R |only trelloR-0.7.0/trelloR/R/delete_wrappers.R |only trelloR-0.7.0/trelloR/R/deprecated.R |only trelloR-0.7.0/trelloR/R/get-nested.R |only trelloR-0.7.0/trelloR/R/get_board.R | 76 ++++++--- trelloR-0.7.0/trelloR/R/get_card.R | 41 ++--- trelloR-0.7.0/trelloR/R/get_id.R | 65 +++----- trelloR-0.7.0/trelloR/R/get_list.R | 26 --- trelloR-0.7.0/trelloR/R/get_member.R | 45 ++--- trelloR-0.7.0/trelloR/R/get_org.R | 20 -- trelloR-0.7.0/trelloR/R/get_resource.R |only trelloR-0.7.0/trelloR/R/get_token.R |only trelloR-0.7.0/trelloR/R/on-attach.R |only trelloR-0.7.0/trelloR/R/print_token.R |only trelloR-0.7.0/trelloR/R/rbind_vector.R |only trelloR-0.7.0/trelloR/R/search_resource.R |only trelloR-0.7.0/trelloR/R/trelloR.R |only trelloR-0.7.0/trelloR/R/trello_api_verb.R |only trelloR-0.7.0/trelloR/R/update_resource.R |only trelloR-0.7.0/trelloR/R/update_wrappers.R |only trelloR-0.7.0/trelloR/R/utils.R | 68 +++++++- trelloR-0.7.0/trelloR/README.md | 40 +++-- trelloR-0.7.0/trelloR/build/vignette.rds |binary trelloR-0.7.0/trelloR/inst/doc/auth-access.R |only trelloR-0.7.0/trelloR/inst/doc/auth-access.Rmd |only trelloR-0.7.0/trelloR/inst/doc/auth-access.html |only trelloR-0.7.0/trelloR/inst/doc/create-update-delete.R |only trelloR-0.7.0/trelloR/inst/doc/create-update-delete.Rmd |only trelloR-0.7.0/trelloR/inst/doc/create-update-delete.html |only trelloR-0.7.0/trelloR/inst/doc/getting-public-data.R |only trelloR-0.7.0/trelloR/inst/doc/getting-public-data.Rmd |only trelloR-0.7.0/trelloR/inst/doc/getting-public-data.html |only trelloR-0.7.0/trelloR/man/Deprecated.Rd |only trelloR-0.7.0/trelloR/man/add_board.Rd |only trelloR-0.7.0/trelloR/man/add_card.Rd |only trelloR-0.7.0/trelloR/man/add_checkitem.Rd |only trelloR-0.7.0/trelloR/man/add_checklist.Rd |only trelloR-0.7.0/trelloR/man/add_comment.Rd |only trelloR-0.7.0/trelloR/man/add_field.Rd |only trelloR-0.7.0/trelloR/man/add_field_option.Rd |only trelloR-0.7.0/trelloR/man/add_label.Rd |only trelloR-0.7.0/trelloR/man/add_list.Rd |only trelloR-0.7.0/trelloR/man/add_member.Rd |only trelloR-0.7.0/trelloR/man/as_POSIXct_hex.Rd |only trelloR-0.7.0/trelloR/man/create_resource.Rd |only trelloR-0.7.0/trelloR/man/delete_card.Rd |only trelloR-0.7.0/trelloR/man/delete_checkitem.Rd |only trelloR-0.7.0/trelloR/man/delete_checklist.Rd |only trelloR-0.7.0/trelloR/man/delete_field.Rd |only trelloR-0.7.0/trelloR/man/delete_field_option.Rd |only trelloR-0.7.0/trelloR/man/delete_resource.Rd |only trelloR-0.7.0/trelloR/man/extract_id.Rd |only trelloR-0.7.0/trelloR/man/get_board.Rd | 22 +- trelloR-0.7.0/trelloR/man/get_card.Rd | 13 + trelloR-0.7.0/trelloR/man/get_id.Rd | 7 trelloR-0.7.0/trelloR/man/get_list.Rd | 7 trelloR-0.7.0/trelloR/man/get_member_boards.Rd | 7 trelloR-0.7.0/trelloR/man/get_member_fields.Rd | 14 + trelloR-0.7.0/trelloR/man/get_my_boards.Rd | 11 - trelloR-0.7.0/trelloR/man/get_resource.Rd |only trelloR-0.7.0/trelloR/man/get_team.Rd | 9 - trelloR-0.7.0/trelloR/man/get_token.Rd |only trelloR-0.7.0/trelloR/man/move_card.Rd |only trelloR-0.7.0/trelloR/man/print.Trello_API_token.Rd |only trelloR-0.7.0/trelloR/man/search_resource.Rd |only trelloR-0.7.0/trelloR/man/trelloR.Rd |only trelloR-0.7.0/trelloR/man/update_card.Rd |only trelloR-0.7.0/trelloR/man/update_card_field.Rd |only trelloR-0.7.0/trelloR/man/update_card_labels.Rd |only trelloR-0.7.0/trelloR/man/update_card_members.Rd |only trelloR-0.7.0/trelloR/man/update_checkitem.Rd |only trelloR-0.7.0/trelloR/man/update_field.Rd |only trelloR-0.7.0/trelloR/man/update_resource.Rd |only trelloR-0.7.0/trelloR/tests |only trelloR-0.7.0/trelloR/vignettes/auth-access.Rmd |only trelloR-0.7.0/trelloR/vignettes/create-update-delete.Rmd |only trelloR-0.7.0/trelloR/vignettes/getting-public-data.Rmd |only 95 files changed, 410 insertions(+), 286 deletions(-)
Title: Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Description: Enables quick calibration of radiocarbon dates under various
calibration curves (including user generated ones); age-depth modelling
as per the algorithm of Haslett and Parnell (2008) <DOI:10.1111/j.1467-9876.2008.00623.x>; Relative sea level
rate estimation incorporating time uncertainty in polynomial regression
models (Parnell and Gehrels 2015) <DOI:10.1002/9781118452547.ch32>; non-parametric phase modelling via
Gaussian mixtures as a means to determine the activity of a site
(and as an alternative to the Oxcal function SUM; currently
unpublished), and reverse calibration of dates from calibrated into
un-calibrated years (also unpublished).
Author: Andrew Parnell
Maintainer: Andrew Parnell <Andrew.Parnell@mu.ie>
Diff between Bchron versions 4.7.3 dated 2020-11-21 and 4.7.4 dated 2021-01-28
Bchron-4.7.3/Bchron/R/sampleAges.R |only Bchron-4.7.4/Bchron/DESCRIPTION | 10 Bchron-4.7.4/Bchron/MD5 | 102 +- Bchron-4.7.4/Bchron/NEWS.md | 10 Bchron-4.7.4/Bchron/R/Bchron.R | 2 Bchron-4.7.4/Bchron/R/BchronCalibrate.R | 127 +- Bchron-4.7.4/Bchron/R/BchronDensity.R | 254 ++--- Bchron-4.7.4/Bchron/R/BchronDensityFast.R | 54 - Bchron-4.7.4/Bchron/R/BchronRSL.R | 89 - Bchron-4.7.4/Bchron/R/Bchronology.R | 652 +++++++------- Bchron-4.7.4/Bchron/R/SampleAges.R |only Bchron-4.7.4/Bchron/R/choosePositions.BchronologyRun.R | 310 +++--- Bchron-4.7.4/Bchron/R/coreInfluence.BchronologyRun.R | 214 ++-- Bchron-4.7.4/Bchron/R/createCalCurve.R | 72 - Bchron-4.7.4/Bchron/R/data.R | 23 Bchron-4.7.4/Bchron/R/dateInfluence.BchronologyRun.R | 576 ++++++------ Bchron-4.7.4/Bchron/R/hdr.R | 75 - Bchron-4.7.4/Bchron/R/plot.BchronCalibratedDates.R | 497 ++++++---- Bchron-4.7.4/Bchron/R/plot.BchronDensityRun.R | 115 +- Bchron-4.7.4/Bchron/R/plot.BchronDensityRunFast.R | 101 +- Bchron-4.7.4/Bchron/R/plot.BchronRSLRun.R | 264 ++--- Bchron-4.7.4/Bchron/R/plot.BchronologyRun.R | 264 +++-- Bchron-4.7.4/Bchron/R/predict.BchronologyRun.R | 152 +-- Bchron-4.7.4/Bchron/R/summary.BchronCalibratedDates.R | 20 Bchron-4.7.4/Bchron/R/summary.BchronDensityRun.R | 17 Bchron-4.7.4/Bchron/R/summary.BchronRSLRun.R | 158 +-- Bchron-4.7.4/Bchron/R/summary.BchronologyRun.R | 172 +-- Bchron-4.7.4/Bchron/R/unCalibrate.R | 179 ++- Bchron-4.7.4/Bchron/inst/doc/Bchron.html | 117 -- Bchron-4.7.4/Bchron/man/BchronCalibrate.Rd | 25 Bchron-4.7.4/Bchron/man/BchronDensity.Rd | 10 Bchron-4.7.4/Bchron/man/BchronDensityFast.Rd | 10 Bchron-4.7.4/Bchron/man/BchronRSL.Rd | 20 Bchron-4.7.4/Bchron/man/Bchronology.Rd | 27 Bchron-4.7.4/Bchron/man/choosePositions.Rd | 37 Bchron-4.7.4/Bchron/man/coreInfluence.Rd | 65 - Bchron-4.7.4/Bchron/man/createCalCurve.Rd | 36 Bchron-4.7.4/Bchron/man/dateInfluence.Rd | 20 Bchron-4.7.4/Bchron/man/hdr.Rd | 6 Bchron-4.7.4/Bchron/man/plot.BchronCalibratedDates.Rd | 9 Bchron-4.7.4/Bchron/man/plot.BchronDensityRun.Rd | 3 Bchron-4.7.4/Bchron/man/plot.BchronDensityRunFast.Rd | 4 Bchron-4.7.4/Bchron/man/plot.BchronologyRun.Rd | 3 Bchron-4.7.4/Bchron/man/sampleAges.Rd | 10 Bchron-4.7.4/Bchron/man/unCalibrate.Rd | 21 Bchron-4.7.4/Bchron/src/Bchron.c | 1 Bchron-4.7.4/Bchron/tests/testthat/test_BchronCalibrate.R | 82 + Bchron-4.7.4/Bchron/tests/testthat/test_BchronDensity.R | 31 Bchron-4.7.4/Bchron/tests/testthat/test_Bchronology.R | 151 +-- Bchron-4.7.4/Bchron/tests/testthat/test_RSL.R | 75 - Bchron-4.7.4/Bchron/tests/testthat/test_all_chrons.R | 359 ++++++- Bchron-4.7.4/Bchron/tests/testthat/test_influence.R | 129 +- Bchron-4.7.4/Bchron/tests/testthat/test_misc_functions.R | 60 - 53 files changed, 3259 insertions(+), 2561 deletions(-)
Title: Tidy Interface to 'data.table'
Description: A tidy interface to 'data.table' that is 'rlang' compatible,
giving users the speed of 'data.table' with the clean syntax of the tidyverse.
Author: Mark Fairbanks [aut, cre],
Tyson Barrett [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb],
Lionel Henry [ctb],
Matt Carlson [ctb],
Abdessabour Moutik [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.5.7 dated 2020-12-16 and 0.5.8 dated 2021-01-28
tidytable-0.5.7/tidytable/man/as_dt.Rd |only tidytable-0.5.8/tidytable/DESCRIPTION | 6 tidytable-0.5.8/tidytable/MD5 | 97 ++++--- tidytable-0.5.8/tidytable/NAMESPACE | 10 tidytable-0.5.8/tidytable/NEWS.md | 23 + tidytable-0.5.8/tidytable/R/arrange.R | 5 tidytable-0.5.8/tidytable/R/as_tidytable.R | 23 - tidytable-0.5.8/tidytable/R/c_across.R |only tidytable-0.5.8/tidytable/R/distinct.R | 1 tidytable-0.5.8/tidytable/R/extract.R |only tidytable-0.5.8/tidytable/R/fill.R | 38 +- tidytable-0.5.8/tidytable/R/get_dummies.R | 4 tidytable-0.5.8/tidytable/R/mutate.R | 10 tidytable-0.5.8/tidytable/R/mutate_across.R | 103 -------- tidytable-0.5.8/tidytable/R/mutate_rowwise.R |only tidytable-0.5.8/tidytable/R/mutate_variants.R | 6 tidytable-0.5.8/tidytable/R/n.R | 2 tidytable-0.5.8/tidytable/R/nest.R | 63 ++-- tidytable-0.5.8/tidytable/R/nest_by.R |only tidytable-0.5.8/tidytable/R/pivot_longer.R | 127 ++++++++-- tidytable-0.5.8/tidytable/R/pivot_wider.R | 85 ++++-- tidytable-0.5.8/tidytable/R/rename_variants.R | 6 tidytable-0.5.8/tidytable/R/row_number.R | 5 tidytable-0.5.8/tidytable/R/select.R | 4 tidytable-0.5.8/tidytable/R/separate_rows.R | 2 tidytable-0.5.8/tidytable/R/slice.R | 65 +++++ tidytable-0.5.8/tidytable/R/summarize_across.R | 49 --- tidytable-0.5.8/tidytable/R/tidytable-package.R | 3 tidytable-0.5.8/tidytable/R/transmute.R | 2 tidytable-0.5.8/tidytable/R/unite.R | 2 tidytable-0.5.8/tidytable/R/unnest.R | 1 tidytable-0.5.8/tidytable/R/utils-across.R |only tidytable-0.5.8/tidytable/R/utils-general.R | 8 tidytable-0.5.8/tidytable/R/utils-stringr.R | 48 ++- tidytable-0.5.8/tidytable/R/vctrs-tidytable.R | 26 +- tidytable-0.5.8/tidytable/README.md | 38 +- tidytable-0.5.8/tidytable/man/as_tidytable.Rd | 2 tidytable-0.5.8/tidytable/man/c_across..Rd |only tidytable-0.5.8/tidytable/man/extract..Rd |only tidytable-0.5.8/tidytable/man/mutate_across..Rd | 8 tidytable-0.5.8/tidytable/man/mutate_rowwise..Rd |only tidytable-0.5.8/tidytable/man/nest..Rd |only tidytable-0.5.8/tidytable/man/nest_by..Rd | 2 tidytable-0.5.8/tidytable/man/pivot_longer..Rd | 39 ++- tidytable-0.5.8/tidytable/man/pivot_wider..Rd | 35 +- tidytable-0.5.8/tidytable/man/row_number..Rd | 2 tidytable-0.5.8/tidytable/man/slice..Rd | 9 tidytable-0.5.8/tidytable/tests/testthat/test-extract.R |only tidytable-0.5.8/tidytable/tests/testthat/test-mutate_rowwise.R |only tidytable-0.5.8/tidytable/tests/testthat/test-mutate_variants.R | 110 -------- tidytable-0.5.8/tidytable/tests/testthat/test-nest.R | 39 +-- tidytable-0.5.8/tidytable/tests/testthat/test-nest_by.R |only tidytable-0.5.8/tidytable/tests/testthat/test-pivot_longer.R | 73 ++++- tidytable-0.5.8/tidytable/tests/testthat/test-pivot_wider.R | 75 ++++- tidytable-0.5.8/tidytable/tests/testthat/test-rename.R | 52 ---- tidytable-0.5.8/tidytable/tests/testthat/test-summarize_across.R | 31 ++ 56 files changed, 737 insertions(+), 602 deletions(-)
Title: Extract Circadian Rhythms Metrics from Actigraphy Data
Description: Circadian rhythms are rhythms that oscillate about every 24 h, which has been observed in multiple physiological processes including core body temperature, hormone secretion, heart rate, blood pressure, and many others. Measuring circadian rhythm with wearables is based on a principle that there is increased movement during wake periods and reduced movement during sleep periods, and has been shown to be reliable and valid. This package can be used to extract nonparametric circadian metrics like intradaily variability (IV), interdaily stability (IS), and relative amplitude (RA); and parametric cosinor model and extended cosinor model coefficient. Details can be found in Junrui Di et al (2019) <doi:10.1007/s12561-019-09236-4>.
Author: Junrui Di [aut, cre],
Vadim zipunnikov [aut]
Maintainer: Junrui Di <dijunrui@gmail.com>
Diff between ActCR versions 0.1.0 dated 2020-06-25 and 0.2.0 dated 2021-01-28
DESCRIPTION | 14 ++++++++------ MD5 | 19 ++++++++++++------- NAMESPACE | 6 ++++++ NEWS.md |only R/ActCosinor.R | 13 ++++++++----- R/ActCosinor_long.R | 16 ++++++++-------- R/ActExtendCosinor.R |only R/ActExtendCosinor_long.R |only README.md | 9 ++++----- man/ActCosinor.Rd | 14 +++++++++----- man/ActCosinor_long.Rd | 16 ++++++++-------- man/ActExtendCosinor.Rd |only man/ActExtendCosinor_long.Rd |only 13 files changed, 63 insertions(+), 44 deletions(-)
Title: Power Calculations for Cluster-Randomized and Cluster-Randomized
Crossover Trials
Description: Calculate power for cluster randomized trials (CRTs) including multi-arm trials, individually randomized group treatment trials (IGRTTs), stepped wedge trials (SWTs) and others using closed-form (analytic) solutions, and estimates power using Monte Carlo methods.
Author: Ken Kleinman [aut, cre],
Alexandria Sakrejda [aut],
Jon Moyer [aut],
Joshua Nugent [aut],
Nicholas Reich [aut],
Daniel Obeng [ctb]
Maintainer: Ken Kleinman <ken.kleinman@gmail.com>
Diff between clusterPower versions 0.6.111 dated 2017-09-05 and 0.7.0 dated 2021-01-28
clusterPower-0.6.111/clusterPower/R/crtpwr.2mean.R |only clusterPower-0.6.111/clusterPower/R/crtpwr.2prop.R |only clusterPower-0.6.111/clusterPower/R/crtpwr.2rate.R |only clusterPower-0.6.111/clusterPower/R/permutationInference.R |only clusterPower-0.6.111/clusterPower/man/crtpwr.2mean.Rd |only clusterPower-0.6.111/clusterPower/man/crtpwr.2prop.Rd |only clusterPower-0.6.111/clusterPower/man/crtpwr.2rate.Rd |only clusterPower-0.6.111/clusterPower/man/expit.Rd |only clusterPower-0.6.111/clusterPower/man/fixed.effect.Rd |only clusterPower-0.6.111/clusterPower/man/hayes.power.poisson.Rd |only clusterPower-0.6.111/clusterPower/man/mixed.eff.params.Rd |only clusterPower-0.6.111/clusterPower/man/power.sim.normal.Rd |only clusterPower-0.7.0/clusterPower/DESCRIPTION | 34 - clusterPower-0.7.0/clusterPower/MD5 | 126 +++ clusterPower-0.7.0/clusterPower/NAMESPACE | 72 +- clusterPower-0.7.0/clusterPower/NEWS.md | 10 clusterPower-0.7.0/clusterPower/R/aaa.R |only clusterPower-0.7.0/clusterPower/R/argMatch.R |only clusterPower-0.7.0/clusterPower/R/binCalcICC.R |only clusterPower-0.7.0/clusterPower/R/cannedEstimationFunctions.R | 318 +++++----- clusterPower-0.7.0/clusterPower/R/clusterPower.R | 42 + clusterPower-0.7.0/clusterPower/R/confintCalc.R |only clusterPower-0.7.0/clusterPower/R/cpa.binary.R |only clusterPower-0.7.0/clusterPower/R/cpa.count.R |only clusterPower-0.7.0/clusterPower/R/cpa.did.binary.R |only clusterPower-0.7.0/clusterPower/R/cpa.did.count.R |only clusterPower-0.7.0/clusterPower/R/cpa.did.normal.R |only clusterPower-0.7.0/clusterPower/R/cpa.irgtt.binary.R |only clusterPower-0.7.0/clusterPower/R/cpa.irgtt.count.R |only clusterPower-0.7.0/clusterPower/R/cpa.irgtt.normal.R |only clusterPower-0.7.0/clusterPower/R/cpa.ma.binary.R |only clusterPower-0.7.0/clusterPower/R/cpa.ma.count.R |only clusterPower-0.7.0/clusterPower/R/cpa.ma.normal.R |only clusterPower-0.7.0/clusterPower/R/cpa.normal.R |only clusterPower-0.7.0/clusterPower/R/cpa.sw.binary.R |only clusterPower-0.7.0/clusterPower/R/cpa.sw.count.R |only clusterPower-0.7.0/clusterPower/R/cpa.sw.normal.R |only clusterPower-0.7.0/clusterPower/R/cps.binary.R |only clusterPower-0.7.0/clusterPower/R/cps.count.R |only clusterPower-0.7.0/clusterPower/R/cps.did.binary.R |only clusterPower-0.7.0/clusterPower/R/cps.did.count.R |only clusterPower-0.7.0/clusterPower/R/cps.did.normal.R |only clusterPower-0.7.0/clusterPower/R/cps.irgtt.binary.R |only clusterPower-0.7.0/clusterPower/R/cps.irgtt.count.R |only clusterPower-0.7.0/clusterPower/R/cps.irgtt.normal.R |only clusterPower-0.7.0/clusterPower/R/cps.ma.binary.R |only clusterPower-0.7.0/clusterPower/R/cps.ma.binary.internal.R |only clusterPower-0.7.0/clusterPower/R/cps.ma.count.R |only clusterPower-0.7.0/clusterPower/R/cps.ma.count.internal.R |only clusterPower-0.7.0/clusterPower/R/cps.ma.normal.R |only clusterPower-0.7.0/clusterPower/R/cps.ma.normal.internal.R |only clusterPower-0.7.0/clusterPower/R/cps.normal.R |only clusterPower-0.7.0/clusterPower/R/cps.sw.binary.R |only clusterPower-0.7.0/clusterPower/R/cps.sw.count.R |only clusterPower-0.7.0/clusterPower/R/cps.sw.normal.R |only clusterPower-0.7.0/clusterPower/R/createMissingVarianceParam.R |only clusterPower-0.7.0/clusterPower/R/is.wholenumber.R |only clusterPower-0.7.0/clusterPower/R/optimizerSearch.R |only clusterPower-0.7.0/clusterPower/R/package.R |only clusterPower-0.7.0/clusterPower/R/package_map_helper.R |only clusterPower-0.7.0/clusterPower/R/print.method.crtpwr.R |only clusterPower-0.7.0/clusterPower/R/prop_H0_rejection.R |only clusterPower-0.7.0/clusterPower/R/runExample.R |only clusterPower-0.7.0/clusterPower/R/simulationEngines.R | 25 clusterPower-0.7.0/clusterPower/R/summary.method.crtpwr.2arm.R |only clusterPower-0.7.0/clusterPower/R/summary.method.crtpwr.ma.R |only clusterPower-0.7.0/clusterPower/R/type1ErrTest.R |only clusterPower-0.7.0/clusterPower/R/validateVariance.R |only clusterPower-0.7.0/clusterPower/README.md | 2 clusterPower-0.7.0/clusterPower/build |only clusterPower-0.7.0/clusterPower/inst |only clusterPower-0.7.0/clusterPower/man/binCalcICC.Rd |only clusterPower-0.7.0/clusterPower/man/clusterPower.Rd | 39 + clusterPower-0.7.0/clusterPower/man/cpa.binary.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.count.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.did.binary.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.did.count.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.did.normal.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.irgtt.binary.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.irgtt.count.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.irgtt.normal.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.ma.binary.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.ma.count.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.ma.normal.Rd |only clusterPower-0.7.0/clusterPower/man/cpa.normal.Rd |only 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Title: Simulation Education
Description: Contains various functions to be used for simulation education,
including simple Monte Carlo simulation functions, queueing simulation
functions, variate generation functions capable of producing independent
streams and antithetic variates, functions for illustrating random variate
generation for various discrete and continuous distributions, and functions
to compute time-persistent statistics. Also contains functions for
visualizing: event-driven details of a single-server queue model; a Lehmer
random number generator; variate generation via acceptance-rejection; and
of generating a non-homogeneous Poisson process via thinning. Also
contains two queueing data sets (one fabricated, one real-world) to
facilitate input modeling.
Author: Barry Lawson [aut, cre],
Larry Leemis [aut],
Vadim Kudlay [aut]
Maintainer: Barry Lawson <blawson@richmond.edu>
Diff between simEd versions 1.0.3 dated 2017-11-26 and 2.0.0 dated 2021-01-28
DESCRIPTION | 32 - MD5 | 132 ++-- NAMESPACE | 153 ++++- NEWS.md | 24 R/PlotContinuous.R |only R/PlotDiscrete.R |only R/accrej.R |only R/compPlot.R |only R/craps.R | 78 ++ R/galileo.R | 67 +- R/generators.R | 1187 ++++++++++++++++++++++++++++++++------- R/ibeta.R |only R/ibinom.R | 662 +++------------------- R/icauchy.R |only R/ichisq.R |only R/iexp.R | 645 +++------------------ R/ifd.R |only R/igamma.R | 667 +++------------------- R/igeom.R | 649 ++------------------- R/ilnorm.R |only R/ilogis.R |only R/inbinom.R |only R/inorm.R | 634 ++------------------- R/ipois.R |only R/it.R |only R/iunif.R | 633 ++------------------- R/iweibull.R | 651 +++------------------ R/lehmer.R |only R/msq.R | 1278 +++++++++++++++++++++++++++++++++--------- R/queuePlotting.R |only R/queueUtils.R |only R/simEd-package.R |only R/ssq.R | 1374 ++++++++++++++++++++++++++++++++++------------ R/ssqvis.R |only R/thinning.R |only R/utils.R | 948 ++++++++++++++++++++++++++++++- R/zzz.R | 30 - README.md | 130 +++- build/partial.rdb |binary man/accrej.Rd |only man/craps.Rd | 94 +-- man/defaultPlotMSQ.Rd |only man/defaultPlotSSQ.Rd |only man/defaultPlotSkyline.Rd |only man/galileo.Rd | 77 +- man/ibeta.Rd |only man/ibinom.Rd | 334 ++++++----- man/icauchy.Rd |only man/ichisq.Rd |only man/iexp.Rd | 348 ++++++----- man/ifd.Rd |only man/igamma.Rd | 371 ++++++------ man/igeom.Rd | 320 ++++++---- man/ilnorm.Rd |only man/ilogis.Rd |only man/inbinom.Rd |only man/inorm.Rd | 354 ++++++----- man/ipois.Rd |only man/it.Rd |only man/iunif.Rd | 349 ++++++----- man/iweibull.Rd | 353 ++++++----- man/lehmer.Rd |only man/meanTPS.Rd | 67 +- man/msq.Rd | 499 ++++++++++------ man/quantileTPS.Rd | 84 +- man/queueTrace.rd | 4 man/sample.Rd | 127 ++-- man/sdTPS.Rd | 80 +- man/set.seed.Rd | 107 +-- man/simEd-package.Rd | 184 +++--- man/ssq.Rd | 483 ++++++++++------ man/ssqvis.Rd |only man/thinning.Rd |only man/vbeta.Rd |only man/vbinom.Rd | 133 ++-- man/vcauchy.Rd |only man/vchisq.Rd |only man/vexp.Rd | 150 ++--- man/vfd.Rd |only man/vgamma.Rd | 161 +++-- man/vgeom.Rd | 136 ++-- man/vlnorm.Rd |only man/vlogis.Rd |only man/vnbinom.Rd |only man/vnorm.Rd | 147 ++-- man/vpois.Rd |only man/vt.Rd |only man/vunif.Rd | 141 ++-- man/vweibull.Rd | 149 ++-- 89 files changed, 8127 insertions(+), 7099 deletions(-)
Title: Prediction Explanation with Dependence-Aware Shapley Values
Description: Complex machine learning models are often hard to interpret. However, in
many situations it is crucial to understand and explain why a model made a specific
prediction. Shapley values is the only method for such prediction explanation framework
with a solid theoretical foundation. Previously known methods for estimating the Shapley
values do, however, assume feature independence. This package implements the method
described in Aas, Jullum and Løland (2019) <arXiv:1903.10464>, which accounts for any feature
dependence, and thereby produces more accurate estimates of the true Shapley values.
Author: Nikolai Sellereite [aut] (<https://orcid.org/0000-0002-4671-0337>),
Martin Jullum [cre, aut] (<https://orcid.org/0000-0003-3908-5155>),
Annabelle Redelmeier [aut],
Anders Løland [ctb],
Jens Christian Wahl [ctb],
Camilla Lingjærde [ctb],
Norsk Regnesentral [cph, fnd]
Maintainer: Martin Jullum <Martin.Jullum@nr.no>
Diff between shapr versions 0.1.4 dated 2021-01-21 and 0.2.0 dated 2021-01-28
shapr-0.1.4/shapr/man/features.Rd |only shapr-0.1.4/shapr/man/model_type.Rd |only shapr-0.2.0/shapr/DESCRIPTION | 10 shapr-0.2.0/shapr/MD5 | 100 + shapr-0.2.0/shapr/NAMESPACE | 41 shapr-0.2.0/shapr/NEWS.md | 18 shapr-0.2.0/shapr/R/explanation.R | 250 +++- shapr-0.2.0/shapr/R/features.R | 165 ++ shapr-0.2.0/shapr/R/models.R | 406 ++++--- shapr-0.2.0/shapr/R/observations.R | 83 + shapr-0.2.0/shapr/R/plot.R | 55 shapr-0.2.0/shapr/R/predictions.R | 3 shapr-0.2.0/shapr/R/preprocess_data.R |only shapr-0.2.0/shapr/R/sampling.R | 243 ++++ shapr-0.2.0/shapr/R/shapley.R | 123 +- shapr-0.2.0/shapr/R/shapr-package.R | 12 shapr-0.2.0/shapr/README.md | 64 - shapr-0.2.0/shapr/inst/REFERENCES.bib | 38 shapr-0.2.0/shapr/inst/doc/understanding_shapr.R | 233 +++- shapr-0.2.0/shapr/inst/doc/understanding_shapr.Rmd | 306 ++++- shapr-0.2.0/shapr/inst/doc/understanding_shapr.html | 448 +++++--- shapr-0.2.0/shapr/inst/joss_paper/paper.Rmd | 1 shapr-0.2.0/shapr/inst/joss_paper/paper.bib | 1 shapr-0.2.0/shapr/inst/joss_paper/paper.pdf |binary shapr-0.2.0/shapr/inst/model_objects/xgboost_model_object_cat.rds |only shapr-0.2.0/shapr/inst/model_objects/xgboost_model_object_raw_cat |only shapr-0.2.0/shapr/man/apply_dummies.Rd |only shapr-0.2.0/shapr/man/check_features.Rd |only shapr-0.2.0/shapr/man/create_ctree.Rd |only shapr-0.2.0/shapr/man/explain.Rd | 131 +- shapr-0.2.0/shapr/man/figures/README-basic_example-1.png |binary shapr-0.2.0/shapr/man/get_data_specs.Rd |only shapr-0.2.0/shapr/man/get_model_specs.Rd |only shapr-0.2.0/shapr/man/get_supported_models.Rd |only shapr-0.2.0/shapr/man/make_dummies.Rd |only shapr-0.2.0/shapr/man/model_checker.Rd |only shapr-0.2.0/shapr/man/plot.shapr.Rd | 54 shapr-0.2.0/shapr/man/predict_model.Rd | 24 shapr-0.2.0/shapr/man/prepare_data.Rd | 31 shapr-0.2.0/shapr/man/preprocess_data.Rd |only shapr-0.2.0/shapr/man/sample_ctree.Rd |only shapr-0.2.0/shapr/man/shapr.Rd | 81 - shapr-0.2.0/shapr/man/update_data.Rd |only shapr-0.2.0/shapr/tests/testthat/manual_test_scripts |only shapr-0.2.0/shapr/tests/testthat/test-a-shapley.R | 137 +- shapr-0.2.0/shapr/tests/testthat/test-explanation.R | 378 +++++- shapr-0.2.0/shapr/tests/testthat/test-features.R | 213 +++ shapr-0.2.0/shapr/tests/testthat/test-models.R | 554 +++++----- shapr-0.2.0/shapr/tests/testthat/test-observations.R | 1 shapr-0.2.0/shapr/tests/testthat/test-plot.R | 13 shapr-0.2.0/shapr/tests/testthat/test-predictions.R | 1 shapr-0.2.0/shapr/tests/testthat/test-sampling.R | 147 ++ shapr-0.2.0/shapr/tests/testthat/test-src_impute_data.R | 122 +- shapr-0.2.0/shapr/tests/testthat/test-src_weighted_matrix.R | 1 shapr-0.2.0/shapr/tests/testthat/test-transformation.R | 4 shapr-0.2.0/shapr/tests/testthat/test_objects/explanation_explain_obj_list.rds |binary shapr-0.2.0/shapr/tests/testthat/test_objects/explanation_explain_obj_list_fixed.rds |binary shapr-0.2.0/shapr/tests/testthat/test_objects/explanation_explain_obj_list_no_ctree.rds |only shapr-0.2.0/shapr/tests/testthat/test_objects/shapley_explainer_obj.rds |binary shapr-0.2.0/shapr/vignettes/understanding_shapr.Rmd | 306 ++++- 60 files changed, 3549 insertions(+), 1249 deletions(-)
Title: Seasonal Generalized Space Time Autoregressive (S-GSTAR) Model
Description: A set of function that implements for seasonal multivariate time series analysis based on Seasonal Generalized Space
Time Autoregressive with Seemingly Unrelated Regression (S-GSTAR-SUR) Model by Setiawan(2016)<https://www.researchgate.net/publication/316517889_S-GSTAR-SUR_model_for_seasonal_spatio_temporal_data_forecasting>.
Author: M. Yoga Satria Utama [aut, cre],
Ernawati Pasaribu [aut]
Maintainer: M. Yoga Satria Utama <221709801@stis.ac.id>
Diff between sgstar versions 0.1.0 dated 2021-01-19 and 0.1.1 dated 2021-01-28
DESCRIPTION | 18 +++++++++--------- MD5 | 10 +++++----- R/plot_sgstar.R | 31 ++++++++++++++++++++++++------- R/sgstar.R | 8 ++++++-- data/simulatedata.rda |binary man/plot_sgstar.Rd | 1 + 6 files changed, 45 insertions(+), 23 deletions(-)
Title: Tools for working with the National Hydrography Dataset
Description: Tools for working with the National Hydrography Dataset, with
functions for querying, downloading, and networking both the NHD
<https://www.usgs.gov/core-science-systems/ngp/national-hydrography>
and NHDPlus <https://www.epa.gov/waterdata/nhdplus-national-hydrography-dataset-plus> datasets.
Author: Joseph Stachelek [aut, cre] (<https://orcid.org/0000-0002-5924-2464>)
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between nhdR versions 0.5.3 dated 2020-03-23 and 0.5.4 dated 2021-01-28
DESCRIPTION | 12 - MD5 | 39 ++-- NAMESPACE | 1 NEWS.md | 5 R/get.R | 9 R/utils.R | 26 +- README.md | 18 + build/vignette.rds |binary inst/CITATION | 8 inst/doc/demo.html | 246 ++++--------------------- inst/doc/flow.html | 300 ++++++------------------------- inst/doc/network.html | 262 ++++----------------------- inst/vpu_key.rds |only man/figures/README-unnamed-chunk-4-1.png |binary tests/testthat/test-get.R | 2 tests/testthat/test-info.R | 2 tests/testthat/test-list.R | 2 tests/testthat/test-load.R | 4 tests/testthat/test-network.R | 8 tests/testthat/test-query.R | 6 tests/testthat/test-utils.R | 2 21 files changed, 236 insertions(+), 716 deletions(-)
Title: Manage Spatial Metadata for Known Locations
Description: A suite of utility functions for discovering and managing metadata
associated with sets of spatially unique "known locations".
Author: Jonathan Callahan [aut, cre],
Eli Grosman [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaLocationUtils versions 0.1.6 dated 2019-11-20 and 0.1.13 dated 2021-01-28
DESCRIPTION | 26 MD5 | 128 +- NAMESPACE | 9 NEWS.md | 54 + R/MazamaLocationUtils.R | 89 +- R/location_createID.R | 10 R/location_getCensusBlock.R |only R/location_getSingleAddress_Photon.R | 163 ++- R/location_getSingleAddress_TexasAM.R |only R/location_getSingleElevation_USGS.R | 19 R/location_initialize.R | 201 +++- R/mazama_initialize.R | 31 R/table_addColumn.R | 2 R/table_addLocation.R | 36 R/table_addSingleLocation.R | 18 R/table_export.R | 2 R/table_findOverlappingLocations.R |only R/table_getNearestDistance.R | 4 R/table_getNearestLocation.R | 23 R/table_getRecordIndex.R | 2 R/table_initialize.R | 6 R/table_initializeExisting.R |only R/table_load.R | 2 R/table_removeColumn.R | 2 R/table_removeRecord.R | 2 R/table_save.R | 2 R/table_updateColumn.R | 2 R/table_updateSingleRecord.R | 2 README.md | 2 build/vignette.rds |binary data/id_monitors_500.rda |binary data/or_monitors_500.rda |binary data/wa_airfire_meta.rda |binary data/wa_monitors_500.rda |binary inst/doc/MazamaLocationUtils.R | 20 inst/doc/MazamaLocationUtils.html | 832 +++++++++---------- man/LocationDataDir.Rd | 4 man/MazamaLocationUtils.Rd | 1 man/apiKeys.Rd |only man/coreMetadataNames.Rd | 4 man/getAPIKey.Rd |only man/id_monitors_500.Rd | 4 man/location_createID.Rd | 10 man/location_getCensusBlock.Rd |only man/location_getSingleAddress_Photon.Rd | 17 man/location_getSingleAddress_TexasAM.Rd |only man/location_getSingleElevation_USGS.Rd | 10 man/location_initialize.Rd | 18 man/mazama_initialize.Rd | 5 man/or_monitors_500.Rd | 4 man/setAPIKey.Rd |only man/table_addColumn.Rd | 11 man/table_addLocation.Rd | 23 man/table_addSingleLocation.Rd | 24 man/table_export.Rd | 2 man/table_findOverlappingLocations.Rd |only man/table_getLocationID.Rd | 8 man/table_getNearestDistance.Rd | 23 man/table_getNearestLocation.Rd | 10 man/table_getRecordIndex.Rd | 5 man/table_initialize.Rd | 3 man/table_initializeExisting.Rd |only man/table_load.Rd | 2 man/table_removeColumn.Rd | 5 man/table_removeRecord.Rd | 5 man/table_save.Rd | 10 man/table_updateColumn.Rd | 11 man/table_updateSingleRecord.Rd | 9 man/wa_airfire_meta.Rd | 4 man/wa_monitors_500.Rd | 4 tests/testthat/test-table_findOverlappingLocations.R |only 71 files changed, 1197 insertions(+), 728 deletions(-)
More information about MazamaLocationUtils at CRAN
Permanent link
Title: A Simple Data Management and Sharing Tool
Description: An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) <https://docs.ropensci.org/elastic/>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) <https://dplyr.tidyverse.org/> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) <doi:10.1093/bioinformatics/btp328>) <http://bioconductor.org/packages/rtracklayer>, 'Biostrings' (H. Pagès and al. (2020) <doi:10.18129/B9.bioc.Biostrings>) <http://bioconductor.org/packages/Biostrings>, and 'Rsamtools' (M. Morgan and al. (2020) <doi:10.18129/B9.bioc.Rsamtools>) <http://bioconductor.org/packages/Rsamtools>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) <https://cran.r-project.org/package=rio>.
Author: Régis Ongaro-Carcy [aut, cre, ctb]
(<https://orcid.org/0000-0002-0091-8810>),
Arnaud Droit [fnd]
Maintainer: Régis Ongaro-Carcy <regis.ongaro-carcy2@crchudequebec.ulaval.ca>
Diff between kibior versions 0.1.0 dated 2020-11-18 and 0.1.1 dated 2021-01-28
kibior-0.1.0/kibior/NEWS |only kibior-0.1.0/kibior/inst/NEWS.md |only kibior-0.1.0/kibior/inst/README.md |only kibior-0.1.0/kibior/inst/doc/introduction_fix.R |only kibior-0.1.0/kibior/inst/doc/introduction_fix.Rmd |only kibior-0.1.0/kibior/inst/doc/introduction_fix.html |only kibior-0.1.0/kibior/man/Static-Install-packages.Rd |only kibior-0.1.0/kibior/vignettes/introduction_fix.Rmd |only kibior-0.1.1/kibior/DESCRIPTION | 8 kibior-0.1.1/kibior/MD5 | 36 +- kibior-0.1.1/kibior/R/kibior.R | 13 - kibior-0.1.1/kibior/README.md | 125 ++++------ kibior-0.1.1/kibior/build/vignette.rds |binary kibior-0.1.1/kibior/inst/CITATION | 4 kibior-0.1.1/kibior/inst/doc/biological_examples_fixed.R |only kibior-0.1.1/kibior/inst/doc/biological_examples_fixed.Rmd |only kibior-0.1.1/kibior/inst/doc/biological_examples_fixed.html |only kibior-0.1.1/kibior/inst/doc/introduction_fixed.R |only kibior-0.1.1/kibior/inst/doc/introduction_fixed.Rmd |only kibior-0.1.1/kibior/inst/doc/introduction_fixed.html |only kibior-0.1.1/kibior/inst/docker_conf |only kibior-0.1.1/kibior/inst/interactive_build_readme.md |only kibior-0.1.1/kibior/man/Static-Tests-if-packages-are-installed.Rd | 9 kibior-0.1.1/kibior/man/kibior.Rd | 6 kibior-0.1.1/kibior/vignettes/biological_examples_fixed.Rmd |only kibior-0.1.1/kibior/vignettes/biological_vignette_ref.json |only kibior-0.1.1/kibior/vignettes/img/kibior-rstudio.png |only kibior-0.1.1/kibior/vignettes/introduction_fixed.Rmd |only 28 files changed, 96 insertions(+), 105 deletions(-)
Title: Tools to Easily Download Data from INSEE BDM Database
Description: Using embedded sdmx queries, get the data of more than 150 000 insee series from bdm database. Have a look at the detailed sdmx web service page with the following link : <https://www.insee.fr/en/information/2868055>.
Author: Hadrien Leclerc [aut, cre],
INSEE [cph]
Maintainer: Hadrien Leclerc <hadrien.leclerc@insee.fr>
Diff between insee versions 0.9.0 dated 2020-09-04 and 1.0.0 dated 2021-01-28
DESCRIPTION | 15 MD5 | 130 ++++--- NAMESPACE | 2 NEWS.md | 13 R/add_insee_metadata.R |only R/add_insee_title.R | 6 R/add_type_qual_conf_rev_metadata.R |only R/add_type_qual_conf_rev_title.R |only R/clean_insee_folder.R |only R/clean_table.R | 6 R/create_insee_folder.R |only R/download_idbank_list.R |only R/get_column_title.R |only R/get_dataset_dimension.R |only R/get_dataset_list.R | 5 R/get_dimension_values.R |only R/get_idbank_list.R | 216 +++++++++--- R/get_insee.R | 55 +-- R/get_insee_dataset.R | 51 ++ R/get_insee_idbank.R | 25 - R/get_insee_title.R | 15 R/get_last_release.R | 68 ++- R/read_dataset_metadata.R |only R/read_sdmx_fast.R | 20 - R/read_sdmx_slow.R | 73 +--- R/search_insee.R | 72 +++- R/set_data_col.R |only R/set_metadata_col.R |only R/split_title.R | 61 ++- R/sysdata.rda |only R/zzz.R | 6 README.md | 241 +++++++++++-- build/vignette.rds |binary inst/doc/insee.R | 128 ------- inst/doc/insee.Rmd | 85 ++-- inst/doc/insee.html | 593 ++++++++------------------------- inst/doc/v2_gdp-vignettes.R | 34 - inst/doc/v2_gdp-vignettes.Rmd | 14 inst/doc/v2_gdp-vignettes.html | 123 ++++-- inst/doc/v3_inflation-vignettes.R | 50 -- inst/doc/v3_inflation-vignettes.Rmd | 17 inst/doc/v3_inflation-vignettes.html | 152 +++++--- inst/doc/v4_unem-vignettes.R | 38 -- inst/doc/v4_unem-vignettes.Rmd | 14 inst/doc/v4_unem-vignettes.html | 126 ++++--- inst/doc/v5_pop-vignettes.R | 41 -- inst/doc/v5_pop-vignettes.Rmd | 17 inst/doc/v5_pop-vignettes.html | 138 +++++-- inst/doc/v6_pop_map-vignettes.R | 77 ---- inst/doc/v6_pop_map-vignettes.Rmd | 73 +++- inst/doc/v6_pop_map-vignettes.html | 245 +++++++++---- inst/doc/v7_death_birth-vignettes.R |only inst/doc/v7_death_birth-vignettes.Rmd |only inst/doc/v7_death_birth-vignettes.html |only man/add_insee_metadata.Rd |only man/add_insee_title.Rd | 82 ++-- man/clean_table.Rd | 6 man/get_column_title.Rd |only man/get_idbank_list.Rd | 14 man/get_insee.Rd | 8 man/get_insee_dataset.Rd | 115 +++--- man/get_insee_idbank.Rd | 183 ++++------ man/get_insee_title.Rd | 87 ++-- man/search_insee.Rd | 19 - man/split_title.Rd | 76 ++-- tests/testthat/test_all.R | 88 ++++ vignettes/death_birth.png |only vignettes/gdp.png |binary vignettes/insee.Rmd | 85 ++-- vignettes/pop_map.png |binary vignettes/v2_gdp-vignettes.Rmd | 14 vignettes/v3_inflation-vignettes.Rmd | 17 vignettes/v4_unem-vignettes.Rmd | 14 vignettes/v5_pop-vignettes.Rmd | 17 vignettes/v6_pop_map-vignettes.Rmd | 73 +++- vignettes/v7_death_birth-vignettes.Rmd |only 76 files changed, 2112 insertions(+), 1831 deletions(-)
Title: Generalized Weighted Quantile Sum Regression
Description: Fits Weighted Quantile Sum (WQS) regressions for continuous, binomial, multinomial and count outcomes.
Author: Stefano Renzetti, Paul Curtin, Allan C Just, Ghalib Bello, Chris Gennings
Maintainer: Stefano Renzetti <stefano.renzetti88@gmail.com>
Diff between gWQS versions 3.0.1 dated 2020-11-19 and 3.0.2 dated 2021-01-28
DESCRIPTION | 11 - MD5 | 9 - R/gwqs.R | 44 +++--- build/partial.rdb |only inst/doc/gwqs-vignette.html | 300 +++++++++++++++++++++++++++++++------------- man/main_functions.Rd | 42 +++--- 6 files changed, 277 insertions(+), 129 deletions(-)
Title: Lightweight Implementation for the Most Common Gaussian Process
Models
Description: Implements the most common Gaussian process (GP) models using Laplace and
expectation propagation (EP) approximations, maximum marginal likelihood
(or posterior) inference for the hyperparameters, and sparse approximations
for larger datasets.
Author: Juho Piironen [cre, aut]
Maintainer: Juho Piironen <juho.t.piironen@gmail.com>
Diff between gplite versions 0.11.0 dated 2021-01-27 and 0.11.1 dated 2021-01-28
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/quickstart.html | 6 +++--- src/cf.cpp | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Gene Association Network-Based Pathway Analysis (GANPA)
Description: A network-based gene weighting algorithm for pathway enrichment analysis, using either RNA-seq or microarray data. Zhaoyuan Fang, Weidong Tian and Hongbin Ji (2012) <doi:10.1038/cr.2011.149>.
Author: Zhaoyuan Fang, Weidong Tian and Hongbin Ji
Maintainer: Zhaoyuan Fang <fangzhaoyuan@sibs.ac.cn>
Diff between GANPA versions 1.0 dated 2011-05-29 and 1.1 dated 2021-01-28
GANPA-1.0/GANPA/Read-and-delete-me |only GANPA-1.1/GANPA/DESCRIPTION | 15 +++++++-------- GANPA-1.1/GANPA/MD5 |only GANPA-1.1/GANPA/NAMESPACE | 2 +- GANPA-1.1/GANPA/R/gsets.R | 3 ++- GANPA-1.1/GANPA/R/gsettest.R | 10 +++++++--- GANPA-1.1/GANPA/man/GANPA-package.Rd | 2 -- GANPA-1.1/GANPA/man/GSE.Test.Main.Rd | 15 +++++++++------ GANPA-1.1/GANPA/man/weight.gsets.test.Rd | 2 -- GANPA-1.1/GANPA/man/weight.gsets.with.msprot.Rd | 3 --- 10 files changed, 26 insertions(+), 26 deletions(-)
Title: Quantify the Balance of Phylogenetic Trees
Description: Measures the degree of balance for a given phylogenetic tree by
calculating the Total Cophenetic Index.
Reference: A. Mir, F. Rossello, L. A. Rotger (2013).
A new balance index for phylogenetic trees.
Math. Biosci. 241, 125-136 <doi:10.1016/j.mbs.2012.10.005>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TotalCopheneticIndex versions 1.0.1 dated 2019-01-29 and 2.0.0 dated 2021-01-28
DESCRIPTION | 20 ++++----- MD5 | 21 +++++---- NAMESPACE | 4 + NEWS.md | 7 ++- R/total.cophenetic.index.R | 95 ++------------------------------------------- README.md | 17 ++++---- inst/CITATION | 9 +--- inst/WORDLIST |only man/list.ancestors.Rd | 2 man/tci.Rd | 6 +- man/tci.context.Rd | 2 tests/testthat/test-tci.R | 43 ++++++++++++++------ 12 files changed, 84 insertions(+), 142 deletions(-)
More information about TotalCopheneticIndex at CRAN
Permanent link
Title: Deciphering Central Informative Nodes in Network Analysis
Description: Functions for computing, comparing and demonstrating top informative centrality measures within a network.
Author: Minoo Ashtiani [aut, cre],
Mehdi Mirzaie [ctb],
Mohieddin Jafari [ctb]
Maintainer: Minoo Ashtiani <ashtiani.minoo@gmail.com>
Diff between CINNA versions 1.1.53 dated 2019-02-25 and 1.1.54 dated 2021-01-28
DESCRIPTION | 10 MD5 | 83 ++--- NAMESPACE | 286 +++++++++--------- R/CINNA.R | 2 build/vignette.rds |binary inst/CITATION |only inst/doc/CINNA.R | 20 - inst/doc/CINNA.html | 496 +++++++++++++++++++++++--------- man/calculate_centralities.Rd | 379 ++++++++++++------------ man/cortex.Rd | 48 +-- man/dangalchev_closeness_centrality.Rd | 90 +++-- man/drugTarget.Rd | 56 +-- man/giant_component_extract.Rd | 104 +++--- man/graph_extract_components.Rd | 96 +++--- man/group_centrality.Rd | 70 ++-- man/harmonic_centrality.Rd | 92 +++-- man/kangaroo.Rd | 52 +-- man/local_bridging_centrality.Rd | 70 ++-- man/misc_extract_components.Rd | 96 +++--- man/pca_centralities.Rd | 100 +++--- man/print_calculate_centralities.Rd | 46 +- man/print_visualize_association.Rd | 52 +-- man/print_visualize_correlations.Rd | 66 ++-- man/print_visualize_dendrogram.Rd | 69 ++-- man/print_visualize_graph.Rd | 58 ++- man/print_visualize_heatmap.Rd | 50 +-- man/print_visualize_pair_correlation.Rd | 52 +-- man/proper_centralities.Rd | 68 ++-- man/rhesus.Rd | 62 ++-- man/summary_calculate_centralities.Rd | 46 +- man/summary_graph_extract_components.Rd | 58 ++- man/summary_pca_centralities.Rd | 50 +-- man/summary_tsne_centralities.Rd | 70 ++-- man/tsne_centralities.Rd | 78 ++--- man/visualize_association.Rd | 72 ++-- man/visualize_correlations.Rd | 72 ++-- man/visualize_dendrogram.Rd | 74 ++-- man/visualize_graph.Rd | 65 ++-- man/visualize_heatmap.Rd | 50 +-- man/visualize_pair_correlation.Rd | 70 ++-- man/wiener_index_centrality.Rd | 84 ++--- man/zachary.Rd | 48 +-- vignettes/bibliography.bib | 4 43 files changed, 1906 insertions(+), 1608 deletions(-)
More information about OptimalRerandExpDesigns at CRAN
Permanent link
Title: Directional Highest Density Regions
Description: We provide an R tool for nonparametric plug-in estimation of Highest Density Regions (HDRs) in the directional setting. Concretely, circular and spherical regions can be reconstructed from a data sample following Saavedra-Nieves and Crujeiras (2020) <arXiv:2009.08915>. This library also contains two real datasets in the circular and spherical settings. The first one concerns a problem from animal orientation studies and the second one is related to earthquakes occurrences.
Author: Paula Saavedra-Nieves [aut, cre],
Rosa M Crujeiras [aut],
Andrés Prieto [ctb],
Felicita Scapini [dtc]
Maintainer: Paula Saavedra-Nieves <paula.saavedra@usc.es>
Diff between HDiR versions 1.0 dated 2020-12-07 and 1.1 dated 2021-01-28
DESCRIPTION | 6 - MD5 | 4 - R/circ.plugin.hdr.R | 198 ++++++++++++++++++++++++++++------------------------ 3 files changed, 113 insertions(+), 95 deletions(-)
Title: Curriculum Vitae for R Markdown
Description: Provides templates and functions to simplify the production and maintenance of curriculum vitae.
Author: Mitchell O'Hara-Wild [aut, cre]
(<https://orcid.org/0000-0001-6729-7695>),
Rob Hyndman [aut] (<https://orcid.org/0000-0002-2140-5352>),
Yihui Xie [ctb] (<https://orcid.org/0000-0003-0645-5666>),
Albert Krewinkel [cph] (Multiple bibliographies lua filter),
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>)
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vitae versions 0.3.0 dated 2020-11-11 and 0.4.0 dated 2021-01-28
vitae-0.3.0/vitae/R/csl_types.R |only vitae-0.3.0/vitae/R/formats.R |only vitae-0.3.0/vitae/man/cv_formats.Rd |only vitae-0.4.0/vitae/DESCRIPTION | 12 vitae-0.4.0/vitae/MD5 | 92 +- vitae-0.4.0/vitae/NAMESPACE | 44 - vitae-0.4.0/vitae/NEWS.md | 32 vitae-0.4.0/vitae/R/awesomecv.R | 24 vitae-0.4.0/vitae/R/bibliography.R | 39 - vitae-0.4.0/vitae/R/brief.R | 9 vitae-0.4.0/vitae/R/csl_date.R |only vitae-0.4.0/vitae/R/csl_name.R |only vitae-0.4.0/vitae/R/cv_document.R | 10 vitae-0.4.0/vitae/R/detailed.R | 26 vitae-0.4.0/vitae/R/dplyr.R | 2 vitae-0.4.0/vitae/R/hyndman.R | 15 vitae-0.4.0/vitae/R/latexcv.R | 16 vitae-0.4.0/vitae/R/markdowncv.R |only vitae-0.4.0/vitae/R/moderncv.R | 17 vitae-0.4.0/vitae/R/preview.R |only vitae-0.4.0/vitae/R/sysdata.rda |only vitae-0.4.0/vitae/R/twentyseconds.R | 20 vitae-0.4.0/vitae/R/utils.R | 13 vitae-0.4.0/vitae/R/vitae-package.R | 2 vitae-0.4.0/vitae/README.md | 29 vitae-0.4.0/vitae/inst/doc/data.html | 237 ------- vitae-0.4.0/vitae/inst/doc/extending.R | 12 vitae-0.4.0/vitae/inst/doc/extending.Rmd | 90 +- vitae-0.4.0/vitae/inst/doc/extending.html | 326 +--------- vitae-0.4.0/vitae/inst/doc/vitae.html | 290 -------- vitae-0.4.0/vitae/inst/rmarkdown/templates/markdowncv |only vitae-0.4.0/vitae/inst/rmarkdown/templates/moderncv/skeleton/moderncv.cls | 41 + vitae-0.4.0/vitae/man/awesomecv.Rd |only vitae-0.4.0/vitae/man/csl_date.Rd | 35 - vitae-0.4.0/vitae/man/csl_name.Rd | 32 vitae-0.4.0/vitae/man/cv_document.Rd | 9 vitae-0.4.0/vitae/man/cv_entries.Rd | 18 vitae-0.4.0/vitae/man/figures/preview-awesomecv.png |only vitae-0.4.0/vitae/man/figures/preview-hyndman.png |only vitae-0.4.0/vitae/man/figures/preview-latexcv.png |only vitae-0.4.0/vitae/man/figures/preview-markdowncv.png |only vitae-0.4.0/vitae/man/figures/preview-moderncv.png |only vitae-0.4.0/vitae/man/figures/preview-twentyseconds.png |only vitae-0.4.0/vitae/man/hyndman.Rd |only vitae-0.4.0/vitae/man/insert_preview.Rd |only vitae-0.4.0/vitae/man/latexcv.Rd |only vitae-0.4.0/vitae/man/markdowncv.Rd |only vitae-0.4.0/vitae/man/moderncv.Rd |only vitae-0.4.0/vitae/man/twentyseconds.Rd |only vitae-0.4.0/vitae/tests/testthat/test-template.R | 5 vitae-0.4.0/vitae/vignettes/extending.Rmd | 90 +- 51 files changed, 628 insertions(+), 959 deletions(-)
Title: Tools for Case 1 Best-Worst Scaling
Description: Provides basic functions that support an implementation of object case (Case 1) best-worst scaling: a function for converting a two-level orthogonal main-effect design/balanced incomplete block design into questions; two functions for creating a data set suitable for analysis; a function for calculating count-based scores; a function for calculating shares of preference; and a function for generating artificial responses to questions. For details on best-worst scaling, see Louviere et al. (2015) <doi:10.1017/CBO9781107337855>.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>
Diff between support.BWS versions 0.4-2 dated 2020-08-27 and 0.4-3 dated 2021-01-28
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NEWS | 4 ++ R/bws.dataset.R | 22 ++++++++++-- man/bws.apollo.Rd | 6 --- man/bws.dataset.Rd | 13 ++++--- man/support.BWS-package.Rd | 80 ++++++++++++++++++++++++++++++++------------- 7 files changed, 98 insertions(+), 47 deletions(-)
Title: R6 Objects for Text and Data
Description: For natural language processing and analysis of qualitative text
coding structures which provide a way to bind together text and text data
are fundamental. The package provides such a structure and accompanying
methods in form of R6 objects. The 'rtext' class allows for text handling
and text coding (character or regex based) including data updates on
text transformations as well as aggregation on various levels.
Furthermore, the usage of R6 enables inheritance and passing by reference
which should enable 'rtext' instances to be used as back-end for R based
graphical text editors or text coding GUIs.
Author: Peter Meissner [aut, cre],
Ulrich Sieberer [cph],
University of Konstanz [cph]
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between rtext versions 0.1.21 dated 2019-01-23 and 0.1.22 dated 2021-01-28
rtext-0.1.21/rtext/README.md |only rtext-0.1.22/rtext/DESCRIPTION | 10 - rtext-0.1.22/rtext/MD5 | 40 ++--- rtext-0.1.22/rtext/NEWS.md | 7 rtext-0.1.22/rtext/R/R6_rtext_extended.r | 2 rtext-0.1.22/rtext/R/imports.r | 30 +-- rtext-0.1.22/rtext/R/tools.R | 27 ++- rtext-0.1.22/rtext/inst/CITATION | 2 rtext-0.1.22/rtext/man/R6_rtext_extended.Rd | 81 +++++++++- rtext-0.1.22/rtext/man/plot.rtext.Rd | 3 rtext-0.1.22/rtext/man/prometheus_early.Rd | 4 rtext-0.1.22/rtext/man/prometheus_late.Rd | 4 rtext-0.1.22/rtext/man/rtext.Rd | 71 ++++++++ rtext-0.1.22/rtext/man/rtext_base.Rd | 198 ++++++++++++++++++++++++- rtext-0.1.22/rtext/man/rtext_export.Rd | 101 ++++++++++++ rtext-0.1.22/rtext/man/rtext_loadsave.Rd | 79 +++++++++ rtext-0.1.22/rtext/man/rtext_tokenize.Rd | 140 +++++++++++++++++ rtext-0.1.22/rtext/man/text_tokenize.rtext.Rd | 22 +- rtext-0.1.22/rtext/man/write_utf8_csv.Rd | 4 rtext-0.1.22/rtext/src/RcppExports.cpp | 10 - rtext-0.1.22/rtext/src/init.c |only rtext-0.1.22/rtext/tests/testthat/test_tools.R | 10 + 22 files changed, 749 insertions(+), 96 deletions(-)
Title: An Advanced Guide to Trade Policy Analysis
Description: On-disk embedded database with SQL versions of the original
datasets from Yotov, et al (2016, ISBN: 978-92-870-4367-2) and functions to
report regressions with clustered robust standard errors.
Author: Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>),
Alexey Kravchenko [ths],
The United Nations [dtc, cph, fnd]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between yotover versions 0.3.2 dated 2020-12-16 and 0.3.5 dated 2021-01-28
yotover-0.3.2/yotover/man/yotov_robust_glm.Rd |only yotover-0.3.5/yotover/DESCRIPTION | 11 yotover-0.3.5/yotover/MD5 | 37 +- yotover-0.3.5/yotover/NAMESPACE | 5 yotover-0.3.5/yotover/R/attach.R | 3 yotover-0.3.5/yotover/R/chapter1.R | 149 ++++++---- yotover-0.3.5/yotover/R/chapter2.R | 25 - yotover-0.3.5/yotover/R/clustered-summary.R |only yotover-0.3.5/yotover/R/connection-pane.R | 14 yotover-0.3.5/yotover/R/connections.R | 108 +++---- yotover-0.3.5/yotover/R/download.R | 4 yotover-0.3.5/yotover/R/remove.R | 1 yotover-0.3.5/yotover/R/zzz.R | 22 + yotover-0.3.5/yotover/man/yotov_clustered_glm.Rd |only yotover-0.3.5/yotover/man/yotov_clustered_summary.Rd |only yotover-0.3.5/yotover/man/yotov_db.Rd | 12 yotover-0.3.5/yotover/man/yotov_db_download.Rd | 4 yotover-0.3.5/yotover/man/yotov_model_summary.Rd | 19 + yotover-0.3.5/yotover/man/yotov_model_summary2.Rd | 27 + yotover-0.3.5/yotover/man/yotov_model_summary3.Rd | 32 +- yotover-0.3.5/yotover/tests/testthat/test-02-tables.R | 2 yotover-0.3.5/yotover/tests/testthat/test-04-clustered-summary.R |only 22 files changed, 303 insertions(+), 172 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-25 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-19 0.1.0
Title: Regional Vulnerability Index
Description: The Regional Vulnerability Index (RVI), a statistical measure of brain structural abnormality, quantifies an individual's similarity to the expected pattern of deficits in schizophrenia (Kochunov P, Fan F, Ryan MC, et al. (2020) <doi:10.1002/hbm.25045>).
Author: Peter Kochunov [aut],
Si Gao [aut, cre],
Fatima Talib [aut]
Maintainer: Si Gao <sgao@som.umaryland.edu>
Diff between RVIpkg versions 0.1.1 dated 2020-09-25 and 0.2.3 dated 2021-01-28
RVIpkg-0.1.1/RVIpkg/R/test.R |only RVIpkg-0.1.1/RVIpkg/data/test.rda |only RVIpkg-0.1.1/RVIpkg/man/test.Rd |only RVIpkg-0.2.3/RVIpkg/DESCRIPTION | 8 ++++---- RVIpkg-0.2.3/RVIpkg/MD5 | 28 ++++++++++++++++++++-------- RVIpkg-0.2.3/RVIpkg/NAMESPACE | 1 + RVIpkg-0.2.3/RVIpkg/R/Ave_func.R |only RVIpkg-0.2.3/RVIpkg/R/EP.GM.R |only RVIpkg-0.2.3/RVIpkg/R/EP.Subcortical.R |only RVIpkg-0.2.3/RVIpkg/R/EP.WM.R |only RVIpkg-0.2.3/RVIpkg/R/RVI_func.R | 27 +++++++++++++++++---------- RVIpkg-0.2.3/RVIpkg/R/data.R |only RVIpkg-0.2.3/RVIpkg/R/sysdata.rda |only RVIpkg-0.2.3/RVIpkg/build/partial.rdb |binary RVIpkg-0.2.3/RVIpkg/data/EP.GM.rda |only RVIpkg-0.2.3/RVIpkg/data/EP.Subcortical.rda |only RVIpkg-0.2.3/RVIpkg/data/EP.WM.rda |only RVIpkg-0.2.3/RVIpkg/data/data.rda |only RVIpkg-0.2.3/RVIpkg/man/Ave_func.Rd |only RVIpkg-0.2.3/RVIpkg/man/EP.GM.Rd |only RVIpkg-0.2.3/RVIpkg/man/EP.Subcortical.Rd |only RVIpkg-0.2.3/RVIpkg/man/EP.WM.Rd |only RVIpkg-0.2.3/RVIpkg/man/RVI_func.Rd | 22 ++++++++++++++-------- RVIpkg-0.2.3/RVIpkg/man/data.Rd |only 24 files changed, 56 insertions(+), 30 deletions(-)
Title: Nonparametric Probability Density Estimator
Description: Farmer, J., D. Jacobs (2108) <DOI:10.1371/journal.pone.0196937>. A nonparametric density estimator based on the maximum-entropy method. Accurately predicts a probability density function (PDF) for random data using a novel iterative scoring function to determine the best fit without overfitting to the sample.
Author: Jenny Farmer <jfarmer6@uncc.edu> and Donald Jacobs <djacobs1@uncc.ecu>
Maintainer: Jenny Farmer <jfarmer6@uncc.edu>
Diff between PDFEstimator versions 0.1-3 dated 2019-04-18 and 2.0 dated 2021-01-28
PDFEstimator-0.1-3/PDFEstimator/src/Partition.cpp |only PDFEstimator-0.1-3/PDFEstimator/src/Partition.h |only PDFEstimator-2.0/PDFEstimator/DESCRIPTION | 8 PDFEstimator-2.0/PDFEstimator/MD5 | 50 +- PDFEstimator-2.0/PDFEstimator/NAMESPACE | 10 PDFEstimator-2.0/PDFEstimator/R/estimatePDF.R | 32 + PDFEstimator-2.0/PDFEstimator/R/getTarget.R |only PDFEstimator-2.0/PDFEstimator/R/lines.R |only PDFEstimator-2.0/PDFEstimator/R/plot.R |only PDFEstimator-2.0/PDFEstimator/R/plotBeta.R |only PDFEstimator-2.0/PDFEstimator/man/estimatePDF.Rd | 15 PDFEstimator-2.0/PDFEstimator/man/getTarget.Rd |only PDFEstimator-2.0/PDFEstimator/man/lines.Rd |only PDFEstimator-2.0/PDFEstimator/man/plot.Rd |only PDFEstimator-2.0/PDFEstimator/man/plotBeta.Rd |only PDFEstimator-2.0/PDFEstimator/src/InputData.cpp | 209 ++++++----- PDFEstimator-2.0/PDFEstimator/src/InputData.h | 10 PDFEstimator-2.0/PDFEstimator/src/InputParameters.cpp | 29 - PDFEstimator-2.0/PDFEstimator/src/InputParameters.h | 7 PDFEstimator-2.0/PDFEstimator/src/MinimizeScore.cpp | 317 ++++++++++-------- PDFEstimator-2.0/PDFEstimator/src/MinimizeScore.h | 26 - PDFEstimator-2.0/PDFEstimator/src/OutputControl.cpp | 18 - PDFEstimator-2.0/PDFEstimator/src/OutputControl.h | 14 PDFEstimator-2.0/PDFEstimator/src/PDFMain.cpp | 24 + PDFEstimator-2.0/PDFEstimator/src/Score.cpp | 57 --- PDFEstimator-2.0/PDFEstimator/src/Score.h | 40 +- PDFEstimator-2.0/PDFEstimator/src/ScoreQZ.cpp |only PDFEstimator-2.0/PDFEstimator/src/ScoreQZ.h |only PDFEstimator-2.0/PDFEstimator/src/WriteResults.cpp | 40 +- PDFEstimator-2.0/PDFEstimator/src/WriteResults.h | 2 PDFEstimator-2.0/PDFEstimator/src/callPDF.cpp | 35 + PDFEstimator-2.0/PDFEstimator/src/callPDF.h | 11 32 files changed, 554 insertions(+), 400 deletions(-)
Title: Forest Data Quality
Description: Forest data quality is a package containing nine methods of analysis for forest databases,
from databases containing inventory data and growth models, the focus of the analyzes is related to the
quality of the data present in the database with a focus on consistency , punctuality and completeness of data.
Author: Caíque de Oliveira de Souza [aut, cre],
Clayton Vieira Fraga Filho [ctb, dtc],
Gilson Fernandes da Silva [ctb, dtc],
Miquéias Fernandes [ctb]
Maintainer: Caíque de Oliveira de Souza <forestgrowthsoftware@gmail.com>
Diff between fdq versions 0.11 dated 2018-11-19 and 0.12 dated 2021-01-28
fdq-0.11/fdq/R/check.integer.R |only fdq-0.11/fdq/R/check_ages.r |only fdq-0.11/fdq/R/check_clone_different_parcel.r |only fdq-0.11/fdq/R/check_dead_state.r |only fdq-0.11/fdq/R/check_existing_ages.r |only fdq-0.11/fdq/R/check_existing_place.r |only fdq-0.11/fdq/R/check_existing_plot.r |only fdq-0.11/fdq/R/check_measurement_ages.r |only fdq-0.11/fdq/R/check_measurements_state.r |only fdq-0.11/fdq/R/check_parcel_different_spacing.r |only fdq-0.11/fdq/R/check_size_age.r |only fdq-0.11/fdq/R/check_undefined_spacing.r |only fdq-0.11/fdq/R/check_variables.r |only fdq-0.11/fdq/R/check_zero_measurement.r |only fdq-0.11/fdq/R/find_missing_age.r |only fdq-0.11/fdq/R/find_missing_place.r |only fdq-0.11/fdq/R/find_missing_variable.r |only fdq-0.11/fdq/R/generate_diameter_classes.r |only fdq-0.11/fdq/R/generate_initial_diameter_class.r |only fdq-0.11/fdq/R/generate_new_color.r |only fdq-0.11/fdq/R/generate_number_hectare.r |only fdq-0.11/fdq/R/getColors.r |only fdq-0.11/fdq/R/get_ages.r |only fdq-0.11/fdq/R/get_max.r |only fdq-0.11/fdq/R/get_min.r |only fdq-0.11/fdq/R/get_place.r |only fdq-0.11/fdq/R/mount_query.r |only fdq-0.11/fdq/R/sort_columns_crescent.r |only fdq-0.11/fdq/README.md |only fdq-0.11/fdq/man/check.integer.Rd |only fdq-0.11/fdq/man/check_ages.Rd |only fdq-0.11/fdq/man/check_clones_different_parcel.Rd |only fdq-0.11/fdq/man/check_dead_state.Rd |only fdq-0.11/fdq/man/check_existing_ages.Rd |only fdq-0.11/fdq/man/check_existing_place.Rd |only fdq-0.11/fdq/man/check_existing_plots.Rd |only fdq-0.11/fdq/man/check_measurement_ages.Rd |only fdq-0.11/fdq/man/check_measurements_state.Rd |only fdq-0.11/fdq/man/check_parcel_different_spacing.Rd |only fdq-0.11/fdq/man/check_size_age_parcel.Rd |only fdq-0.11/fdq/man/check_undefined_spacing.Rd |only fdq-0.11/fdq/man/check_variables.Rd |only fdq-0.11/fdq/man/check_zero_measurement.Rd |only fdq-0.11/fdq/man/find_missing_age.Rd |only fdq-0.11/fdq/man/find_missing_place.Rd |only fdq-0.11/fdq/man/find_missing_variable.Rd |only fdq-0.11/fdq/man/generate_diameter_classes.Rd |only fdq-0.11/fdq/man/generate_initial_diameter_class.Rd |only fdq-0.11/fdq/man/generate_new_color.Rd |only fdq-0.11/fdq/man/generate_number_hectare.Rd |only fdq-0.11/fdq/man/getColors.Rd |only fdq-0.11/fdq/man/get_ages.Rd |only fdq-0.11/fdq/man/get_max.Rd |only fdq-0.11/fdq/man/get_min.Rd |only fdq-0.11/fdq/man/get_place.Rd |only fdq-0.11/fdq/man/mount_query.Rd |only fdq-0.11/fdq/man/sort_columns_crescent.Rd |only fdq-0.11/fdq/tests |only fdq-0.12/fdq/DESCRIPTION | 42 ++++++------ fdq-0.12/fdq/MD5 | 65 +------------------- fdq-0.12/fdq/NAMESPACE | 37 ----------- fdq-0.12/fdq/R/hello.R |only fdq-0.12/fdq/man/hello.Rd |only 63 files changed, 27 insertions(+), 117 deletions(-)
Title: Binary Expansion Testing
Description: Nonparametric detection of nonuniformity and dependence with Binary Expansion Testing (BET). See Kai Zhang (2019) BET on Independence, Journal of the American Statistical Association, 114:528, 1620-1637, <DOI:10.1080/01621459.2018.1537921> and Zhigen Zhao, Michael Baiocchi, Kai Zhang. SorBET: A Fast and Powerful Algorithm to Test Dependence of Variables.
Author: Wan Zhang [aut, cre],
Zhigen Zhao [aut],
Michael Baiocchi [aut],
Kai Zhang [aut]
Maintainer: Wan Zhang <wanz63@live.unc.edu>
Diff between BET versions 0.3.1 dated 2021-01-15 and 0.3.2 dated 2021-01-28
DESCRIPTION | 6 MD5 | 28 +-- NAMESPACE | 22 +-- R/RcppExports.R | 30 ++-- R/plot.R | 382 ++++++++++++++++++++++++++--------------------------- build/partial.rdb |binary man/BET.Rd | 112 +++++++-------- man/BET_package.Rd | 44 +++--- man/BETs.Rd | 110 +++++++-------- man/Beast.Rd | 128 ++++++++--------- man/bet.plot.Rd | 62 ++++---- man/star.Rd | 38 ++--- man/symm.Rd | 70 ++++----- src/BET.h | 2 src/BET3.cpp | 73 ++++++---- 15 files changed, 561 insertions(+), 546 deletions(-)