Title: Annotated Data
Description: An R wrapper for the Python package 'anndata'.
Provides a scalable way of keeping track of data and learned
annotations. Used to read from and write to the h5ad file format.
Author: Philipp Angerer [aut] (<https://orcid.org/0000-0002-0369-2888>,
flying-sheep),
Alex Wolf [aut] (<https://orcid.org/0000-0002-8760-7838>, falexwolf),
Isaac Virshup [aut] (ivirshup),
Sergei Rybakov [aut] (Koncopd),
Robrecht Cannoodt [aut, ctb, cre, cph]
(<https://orcid.org/0000-0003-3641-729X>, rcannood)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between anndata versions 0.7.5 dated 2020-11-19 and 0.7.5.1 dated 2021-02-02
DESCRIPTION | 6 MD5 | 34 +- NAMESPACE | 23 + NEWS.md | 10 R/AnnData.R | 122 +++++--- R/Layers.R |only R/Raw.R |only R/equals_helpers.R |only R/package.R | 2 R/reticulate_conversions.R | 8 README.md | 257 +++++++++++------ man/AnnData.Rd | 468 ++++++++++++++++++++++++++++++- man/AnnDataHelpers.Rd | 9 man/Layers.Rd |only man/LayersHelpers.Rd |only man/RawHelpers.Rd |only man/all.equal.AnnDataR6.Rd | 5 man/all.equal.LayersR6.Rd |only man/readme_files |only tests/testthat/helper-expect_not_equal.R |only tests/testthat/test-anndata.R | 4 tests/testthat/test-base.R | 275 +++++++++++++++--- 22 files changed, 1023 insertions(+), 200 deletions(-)
Title: Estimating Time-Varying k-Order Mixed Graphical Models
Description: Estimation of k-Order time-varying Mixed Graphical Models and mixed VAR(p) models via elastic-net regularized neighborhood regression. For details see Haslbeck & Waldorp (2020) <doi:10.18637/jss.v093.i08>.
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Diff between mgm versions 1.2-10 dated 2020-06-27 and 1.2-11 dated 2021-02-02
DESCRIPTION | 8 - MD5 | 34 ++++---- NAMESPACE | 1 NEWS | 6 + R/FactorGraph.R | 4 R/ModelMatrix.R | 9 -- R/ModelMatrix_standard.R | 5 - R/Reg2Graph.R | 199 +++++++++++++++++++++++++++++------------------ R/bwSelPredict.R | 6 - R/bwSelect.R | 7 + R/condition.R | 44 +++++++--- R/condition_core.R | 22 ++--- R/getSign.R | 2 R/mgm.R | 7 + R/mvar.R | 9 +- R/plotRes.R | 111 +++++++++++++++++++------- R/showInteraction.R | 1 man/plotRes.Rd | 5 - 18 files changed, 308 insertions(+), 172 deletions(-)
Title: Generalized Price and Quantity Indexes
Description: A small package for calculating lots of different price indexes, and by extension quantity indexes. Provides tools to build and work with any type of generalized bilateral index (of which most price indexes are), along with a few important indexes that don't belong to the generalized family. Implements and extends many of the methods in Balk (2008, ISBN:978-1-107-40496-0) and ILO, IMF, OECD, Eurostat, UN, and World Bank (2004, ISBN:92-2-113699-X) for bilateral price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <stevemartin041@gmail.com>
Diff between gpindex versions 0.2.3 dated 2020-12-02 and 0.2.5 dated 2021-02-02
DESCRIPTION | 6 +- MD5 | 43 ++++++++++--------- NAMESPACE | 3 - NEWS | 8 +++ R/0_helper_functions.R | 16 ------- R/1_means.R | 36 +++++++++------- R/2_weights.R | 29 ++++++------- R/3_price_indexes.R | 30 +------------ R/4_quantity_index.R | 5 +- R/5_utilities.R |only inst/doc/gpindex.Rnw | 2 inst/doc/gpindex.pdf |binary man/generalized_mean.Rd | 53 ++++++++++++++++++----- man/gpindex.Rd | 8 +-- man/lehmer_mean.Rd | 6 +- man/logarithmic_means.Rd | 8 +-- man/nested_contributions.Rd | 4 - man/offset_prices.Rd |only man/price_indexes.Rd | 10 ++-- man/quantity_index.Rd | 4 - man/transform_weights.Rd | 8 +-- tests/Examples/gpindex-Ex.Rout.save | 80 ++++++++++++++++++++++++++++++++++-- tests/test_utilities.R |only vignettes/gpindex.Rnw | 2 24 files changed, 223 insertions(+), 138 deletions(-)
Title: R Analyzer for Large-Scale Assessments
Description: Prepare and analyze data from large-scale assessments and surveys with
complex sampling and assessment design (see 'Rutkowski', 2010
<doi:10.3102/0013189X10363170>). Such studies are, for example,
international assessments like 'TIMSS', 'PIRLS' and 'PISA'. A graphical
interface is available for the non-technical user.The package includes
functions to covert the original data from 'SPSS' into 'R' data sets
keeping the user-defined missing values, merge data from different
respondents and/or countries, generate variable dictionaries, modify
data, produce descriptive statistics (percentages, means, percentiles,
benchmarks) and multivariate statistics (correlations, linear
regression, binary logistic regression). The number of supported
studies and analysis types will increase in future.
Author: Plamen V. Mirazchiyski [aut, cre],
INERI [aut]
Maintainer: Plamen V. Mirazchiyski <plamen.mirazchiyski@ineri.org>
Diff between RALSA versions 0.90.1 dated 2020-11-10 and 0.90.2 dated 2021-02-02
DESCRIPTION | 9 MD5 | 52 NEWS.md | 113 R/RALSA.r | 165 R/common.r | 3839 ++++----- R/lsa.bench.r | 2203 ++--- R/lsa.bin.log.reg.r | 1874 ++-- R/lsa.convert.data.r | 4131 +++++----- R/lsa.corr.r | 1350 +-- R/lsa.lin.reg.r | 1894 ++-- R/lsa.merge.data.r | 1816 ++-- R/lsa.pcts.means.r | 1033 +- R/lsa.prctls.r | 1021 +- R/lsa.recode.vars.r | 858 +- R/lsa.vars.dict.r | 508 - R/zzz.r | 18 README.md | 2 inst/shiny/GUI/server.r |19282 +++++++++++++++++++++++------------------------- inst/shiny/GUI/ui.r | 4092 +++++----- man/RALSA.Rd | 3 man/lsa.bench.Rd | 8 man/lsa.bin.log.reg.Rd | 14 man/lsa.corr.Rd | 6 man/lsa.lin.reg.Rd | 8 man/lsa.pcts.means.Rd | 14 man/lsa.prctls.Rd | 4 man/lsa.recode.vars.Rd | 4 27 files changed, 22161 insertions(+), 22160 deletions(-)
Title: An Introduction to Statistics for Geoscientists
Description: A collection of datasets and simplified functions for an introductory (geo)statistics module at University College London. Provides functionality for compositional, directional and spatial data, including ternary diagrams, Wulff and Schmidt stereonets, and ordinary kriging interpolation. Implements logistic and (additive and centred) logratio transformations. Computes vector averages and concentration parameters for the von-Mises distribution. Includes a collection of natural and synthetic fractals, and a simulator for deterministic chaos using a magnetic pendulum example. The main purpose of these functions is pedagogical. Researchers can find more complete alternatives for these tools in other packages such as 'compositions', 'robCompositions', 'sp', 'gstat' and 'RFOC'. All the functions are written in plain R, with no compiled code and a minimal number of dependencies. Theoretical background and worked examples are available at <https://tinyurl.com/UCLgeostats/>.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between geostats versions 1.0 dated 2021-01-09 and 1.1 dated 2021-02-02
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/transformations.R | 10 ++++++---- 3 files changed, 13 insertions(+), 11 deletions(-)
Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame
like objects, both in memory and out of memory.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>),
Lionel Henry [aut],
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dplyr versions 1.0.3 dated 2021-01-15 and 1.0.4 dated 2021-02-02
DESCRIPTION | 6 MD5 | 93 +++++++------- NAMESPACE | 2 NEWS.md | 15 ++ R/aaa.R |only R/across.R | 202 ++++++++++++++++++++++++++++--- R/arrange.R | 2 R/colwise-filter.R | 8 - R/compat-purrr.R | 4 R/count-tally.R | 2 R/data-mask.R | 19 ++ R/group-by.r | 3 R/mutate.R | 187 +++++++++++++++++----------- R/summarise.R | 98 +++++++++------ R/utils.r | 6 R/zzz.r | 2 build/dplyr.pdf |binary inst/doc/base.Rmd | 2 inst/doc/base.html | 62 +++++---- inst/doc/colwise.R | 19 +- inst/doc/colwise.Rmd | 49 +++++-- inst/doc/colwise.html | 197 ++++++++++++++++++------------ inst/doc/compatibility.html | 10 + inst/doc/dplyr.html | 10 + inst/doc/grouping.html | 10 + inst/doc/programming.html | 10 + inst/doc/rowwise.html | 10 + inst/doc/two-table.html | 10 + inst/doc/window-functions.html | 30 +++- man/across.Rd | 21 +++ man/arrange.Rd | 2 man/count.Rd | 2 man/filter_all.Rd | 8 - man/select.Rd | 15 +- src/dplyr.h | 7 + src/filter.cpp | 91 ++++++++++++- src/imports.cpp | 6 src/init.cpp | 7 + src/summarise.cpp | 41 +++++- tests/testthat/helper-dplyr.R | 5 tests/testthat/test-across.R | 67 +++++++++- tests/testthat/test-filter-errors.txt | 12 + tests/testthat/test-filter.r | 40 ++---- tests/testthat/test-mutate.r | 17 ++ tests/testthat/test-summarise-errors.txt | 10 + tests/testthat/test-summarise.r | 10 + vignettes/base.Rmd | 2 vignettes/colwise.Rmd | 49 +++++-- 48 files changed, 1093 insertions(+), 387 deletions(-)
Title: Extracts the Backbone from Weighted Graphs
Description: Provides methods for extracting from a weighted graph
a binary or signed backbone that retains only the significant edges.
The user may input a weighted graph, or a bipartite graph
from which a weighted graph is first constructed via projection.
Backbone extraction methods include the stochastic degree sequence model (Neal, Z. P. (2014). <doi:10.1016/j.socnet.2014.06.001>),
hypergeometric model (Neal, Z. (2013). <doi:10.1007/s13278-013-0107-y>),
the fixed degree sequence model (Zweig, K. A., and Kaufmann, M. (2011). <doi:10.1007/s13278-011-0021-0>),
as well as a universal threshold method.
Author: Rachel Domagalski [aut, cre],
Zachary Neal [aut],
Bruce Sagan [aut]
Maintainer: Rachel Domagalski <domagal9@msu.edu>
Diff between backbone versions 1.2.2 dated 2020-08-26 and 1.3.0 dated 2021-02-02
backbone-1.2.2/backbone/R/RcppExports.R |only backbone-1.2.2/backbone/man/polytope.Rd |only backbone-1.2.2/backbone/src |only backbone-1.3.0/backbone/DESCRIPTION | 15 backbone-1.3.0/backbone/MD5 | 58 +- backbone-1.3.0/backbone/NAMESPACE | 5 backbone-1.3.0/backbone/NEWS.md | 9 backbone-1.3.0/backbone/R/backbone.R | 15 backbone-1.3.0/backbone/R/backbone.extract.R | 19 backbone-1.3.0/backbone/R/bicm.R |only backbone-1.3.0/backbone/R/fdsm.R | 56 ++ backbone-1.3.0/backbone/R/hyperg.R | 5 backbone-1.3.0/backbone/R/model.helpers.R | 155 +----- backbone-1.3.0/backbone/R/sdsm.R | 138 ----- backbone-1.3.0/backbone/R/zzz.R |only backbone-1.3.0/backbone/README.md | 36 + backbone-1.3.0/backbone/build/partial.rdb |only backbone-1.3.0/backbone/build/vignette.rds |binary backbone-1.3.0/backbone/inst/CITATION | 25 - backbone-1.3.0/backbone/inst/doc/backbone.R | 8 backbone-1.3.0/backbone/inst/doc/backbone.Rmd | 89 +-- backbone-1.3.0/backbone/inst/doc/backbone.html | 236 +++++----- backbone-1.3.0/backbone/man/backbone.Rd | 87 +-- backbone-1.3.0/backbone/man/backbone.extract.Rd | 10 backbone-1.3.0/backbone/man/bicm.Rd |only backbone-1.3.0/backbone/man/bipartite.null.Rd |only backbone-1.3.0/backbone/man/curveball.Rd | 46 - backbone-1.3.0/backbone/man/fdsm.Rd | 92 +-- backbone-1.3.0/backbone/man/hyperg.Rd | 74 +-- backbone-1.3.0/backbone/man/loglikelihood_bicm.Rd |only backbone-1.3.0/backbone/man/loglikelihood_hessian_diag_bicm.Rd |only backbone-1.3.0/backbone/man/loglikelihood_prime_bicm.Rd |only backbone-1.3.0/backbone/man/sdsm.Rd | 25 - backbone-1.3.0/backbone/vignettes/backbone.Rmd | 89 +-- backbone-1.3.0/backbone/vignettes/backbone_bib.bib | 7 35 files changed, 642 insertions(+), 657 deletions(-)
Title: Automatic Unobserved Components Models
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
unobserved components models and algorithms.
Harvey, AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal, DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Author: Diego J. Pedregal [aut, cre] (<https://orcid.org/0000-0003-4958-0969>)
Maintainer: Diego J. Pedregal <Diego.Pedregal@uclm.es>
Diff between UComp versions 2.1 dated 2020-10-03 and 2.1.1 dated 2021-02-02
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- R/UCS3functions.R | 26 +++++++++++++----- man/AIC.UComp.Rd |only man/BIC.UComp.Rd |only man/OECDgdp.Rd | 54 ++++++++++++++++++------------------- man/UComp.Rd | 78 +++++++++++++++++++++++++++--------------------------- man/UCvalidate.Rd | 68 +++++++++++++++++++++++------------------------ 8 files changed, 131 insertions(+), 115 deletions(-)
Title: Automated Construction of R Data Packages from REDCap Projects
Description: Export all data, including metadata, from a REDCap (Research
Electronic Data Capture) Project via the REDCap API
<https://projectredcap.org/wp-content/resources/REDCapTechnicalOverview.pdf>.
The exported (meta)data will be processed and formatted into a stand alone R
data package which can be installed and shared between researchers. Several
default reports are generated as vignettes in the resulting package.
Author: Peter DeWitt [aut, cre]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between REDCapExporter versions 0.2.1 dated 2020-05-15 and 0.2.2 dated 2021-02-02
DESCRIPTION | 8 MD5 | 36 +- NAMESPACE | 3 NEWS.md | 16 R/as.R | 4 R/format_record.R | 65 +++- build/vignette.rds |binary data/avs_raw_core.rda |binary data/avs_raw_metadata.rda |binary data/avs_raw_project_info.rda |binary data/avs_raw_record.rda |binary data/avs_raw_user.rda |binary inst/doc/api.R | 10 inst/doc/api.Rmd | 35 +- inst/doc/api.html | 349 +++++---------------- inst/doc/export.html | 565 ++++++++++++----------------------- man/format_record.Rd | 28 + tests/testthat/test-format_records.R | 44 ++ vignettes/api.Rmd | 35 +- 19 files changed, 481 insertions(+), 717 deletions(-)
More information about REDCapExporter at CRAN
Permanent link
Title: Data Quality in Epidemiological Research
Description: A set of functions to assess data quality issues in
studies. See 'TMF' <https://www.tmf-ev.de/EnglishSite/Home.aspx>
guideline and 'DFG' <https://www.dfg.de/en/index.jsp> project at
<https://dfg-qa.ship-med.uni-greifswald.de>.
Author: Adrian Richter [aut],
Carsten Oliver Schmidt [aut],
Stephan Struckmann [aut, cre]
Maintainer: Stephan Struckmann <stephan.struckmann@uni-greifswald.de>
Diff between dataquieR versions 1.0.3 dated 2021-01-26 and 1.0.4 dated 2021-02-02
DESCRIPTION | 6 - MD5 | 56 +++++----- NEWS.md | 11 + R/acc_margins.R | 3 R/acc_multivariate_outlier.R | 2 R/acc_varcomp.R | 3 R/con_contradictions.R | 6 - R/prep_pmap.R | 4 R/summary.dataquieR_resultset.R | 3 R/util_find_external_functions_in_stacktrace.R | 11 + R/util_interpret_limits.R | 36 +++++- R/util_par_pmap.R | 6 - inst/CITATION | 43 ------- inst/doc/DQ-report-example.R | 8 - inst/doc/DQ-report-example.Rmd | 8 - inst/doc/DQ-report-example.html | 16 +- inst/extdata/meta_data.RData |binary inst/extdata/ship_meta.RDS |binary man/acc_margins.Rd | 3 man/acc_multivariate_outlier.Rd | 2 man/acc_varcomp.Rd | 3 man/prep_pmap.Rd | 4 man/summary.dataquieR_resultset.Rd | 3 man/util_par_pmap.Rd | 6 - tests/testthat/test-con_contradictions.R | 5 tests/testthat/test-con_limit_deviations.R | 15 +- tests/testthat/test-util_find_external_functions_in_stacktrace.R | 47 ++++++++ tests/testthat/test-util_interpret_limits.R | 15 +- vignettes/DQ-report-example.Rmd | 8 - 29 files changed, 212 insertions(+), 121 deletions(-)
Title: Text Analysis with Emphasis on POS Tagging, Readability, and
Lexical Diversity
Description: A set of tools to analyze texts. Includes, amongst others, functions for
automatic language detection, hyphenation, several indices of lexical diversity
(e.g., type token ratio, HD-D/vocd-D, MTLD) and readability (e.g., Flesch,
SMOG, LIX, Dale-Chall). Basic import functions for language corpora are also
provided, to enable frequency analyses (supports Celex and Leipzig Corpora
Collection file formats) and measures like tf-idf. Note: For full functionality
a local installation of TreeTagger is recommended. It is also recommended to
not load this package directly, but by loading one of the available language
support packages from the 'l10n' repository
<https://undocumeantit.github.io/repos/l10n/>. 'koRpus' also includes a plugin
for the R GUI and IDE RKWard, providing graphical dialogs for its basic
features. The respective R package 'rkward' cannot be installed directly from a
repository, as it is a part of RKWard. To make full use of this feature, please
install RKWard from <https://rkward.kde.org> (plugins are detected
automatically). Due to some restrictions on CRAN, the full package sources are
only available from the project homepage. To ask for help, report bugs, request
features, or discuss the development of the package, please subscribe to the
koRpus-dev mailing list (<https://korpusml.reaktanz.de>).
Author: Meik Michalke [aut, cre],
Earl Brown [ctb],
Alberto Mirisola [ctb],
Alexandre Brulet [ctb],
Laura Hauser [ctb]
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between koRpus versions 0.13-4 dated 2020-12-11 and 0.13-5 dated 2021-02-02
koRpus-0.13-4/koRpus/R/kRp.text.analysis.R |only koRpus-0.13-5/koRpus/ChangeLog | 24 + koRpus-0.13-5/koRpus/DESCRIPTION | 12 koRpus-0.13-5/koRpus/MD5 | 177 +++++----- koRpus-0.13-5/koRpus/NAMESPACE | 1 koRpus-0.13-5/koRpus/R/01_class_01_kRp.text.R | 29 + koRpus-0.13-5/koRpus/R/01_class_02_kRp.TTR.R | 132 ++++--- koRpus-0.13-5/koRpus/R/01_class_03_kRp.corp.freq.R | 103 +++-- koRpus-0.13-5/koRpus/R/01_class_04_kRp.lang.R | 21 - koRpus-0.13-5/koRpus/R/01_class_05_kRp.readability.R | 172 ++++++--- koRpus-0.13-5/koRpus/R/01_class_90_deprecated_classes.R | 2 koRpus-0.13-5/koRpus/R/02_method_cTest.R | 23 + koRpus-0.13-5/koRpus/R/02_method_clozeDelete.R | 18 - koRpus-0.13-5/koRpus/R/02_method_correct.R | 15 koRpus-0.13-5/koRpus/R/02_method_docTermMatrix.R | 41 +- koRpus-0.13-5/koRpus/R/02_method_filterByClass.R | 13 koRpus-0.13-5/koRpus/R/02_method_freq.analysis.R | 27 + koRpus-0.13-5/koRpus/R/02_method_get_set_kRp.text.R | 71 +++- koRpus-0.13-5/koRpus/R/02_method_hyphen.R | 35 + koRpus-0.13-5/koRpus/R/02_method_jumbleWords.R | 18 - koRpus-0.13-5/koRpus/R/02_method_lex.div.R | 33 + koRpus-0.13-5/koRpus/R/02_method_pasteText.R | 15 koRpus-0.13-5/koRpus/R/02_method_plot.kRp.text.R | 17 koRpus-0.13-5/koRpus/R/02_method_query.R | 66 ++- koRpus-0.13-5/koRpus/R/02_method_read.corp.custom.R | 30 + koRpus-0.13-5/koRpus/R/02_method_readability.R | 40 +- koRpus-0.13-5/koRpus/R/02_method_summary.kRp.TTR.R | 19 - koRpus-0.13-5/koRpus/R/02_method_summary.kRp.readability.R | 19 - koRpus-0.13-5/koRpus/R/02_method_summary.kRp.text.R | 21 - koRpus-0.13-5/koRpus/R/02_method_textTransform.R | 59 +-- koRpus-0.13-5/koRpus/R/02_method_tokenize.R | 84 ++-- koRpus-0.13-5/koRpus/R/02_method_treetag.R | 38 +- koRpus-0.13-5/koRpus/R/02_method_types_tokens.R | 16 koRpus-0.13-5/koRpus/R/get.kRp.env.R | 9 koRpus-0.13-5/koRpus/R/guess.lang.R | 12 koRpus-0.13-5/koRpus/R/kRp.POS.tags.R | 11 koRpus-0.13-5/koRpus/R/koRpus-internal.rdb.formulae.R | 144 ++++---- koRpus-0.13-5/koRpus/R/koRpus-package.R | 4 koRpus-0.13-5/koRpus/R/lex.div.num.R | 7 koRpus-0.13-5/koRpus/R/read.BAWL.R | 11 koRpus-0.13-5/koRpus/R/read.corp.LCC.R | 22 - koRpus-0.13-5/koRpus/R/read.corp.celex.R | 12 koRpus-0.13-5/koRpus/R/readability.num.R | 60 ++- koRpus-0.13-5/koRpus/R/set.kRp.env.R | 12 koRpus-0.13-5/koRpus/R/set.lang.support.R | 24 + koRpus-0.13-5/koRpus/R/textFeatures.R | 15 koRpus-0.13-5/koRpus/R/wrapper_functions_readability.R | 10 koRpus-0.13-5/koRpus/build/partial.rdb |binary koRpus-0.13-5/koRpus/inst/CITATION | 10 koRpus-0.13-5/koRpus/inst/NEWS.Rd | 36 ++ koRpus-0.13-5/koRpus/inst/doc/koRpus_vignette.Rmd | 2 koRpus-0.13-5/koRpus/inst/doc/koRpus_vignette.html | 54 --- koRpus-0.13-5/koRpus/inst/examples |only koRpus-0.13-5/koRpus/man/cTest-methods.Rd | 19 - koRpus-0.13-5/koRpus/man/clozeDelete-methods.Rd | 19 - koRpus-0.13-5/koRpus/man/correct-methods.Rd | 14 koRpus-0.13-5/koRpus/man/docTermMatrix.Rd | 38 +- koRpus-0.13-5/koRpus/man/filterByClass-methods.Rd | 14 koRpus-0.13-5/koRpus/man/freq.analysis-methods.Rd | 30 + koRpus-0.13-5/koRpus/man/fucks.Rd | 11 koRpus-0.13-5/koRpus/man/get.kRp.env.Rd | 6 koRpus-0.13-5/koRpus/man/guess.lang.Rd | 10 koRpus-0.13-5/koRpus/man/hyphen-methods.Rd | 36 +- koRpus-0.13-5/koRpus/man/jumbleWords-methods.Rd | 19 - koRpus-0.13-5/koRpus/man/kRp.POS.tags.Rd | 10 koRpus-0.13-5/koRpus/man/kRp.text_get-methods.Rd | 50 ++ koRpus-0.13-5/koRpus/man/koRpus-deprecated.Rd | 13 koRpus-0.13-5/koRpus/man/koRpus-package.Rd | 4 koRpus-0.13-5/koRpus/man/lex.div-methods.Rd | 32 + koRpus-0.13-5/koRpus/man/lex.div.num.Rd | 5 koRpus-0.13-5/koRpus/man/pasteText-methods.Rd | 17 koRpus-0.13-5/koRpus/man/plot-methods.Rd | 16 koRpus-0.13-5/koRpus/man/query-methods.Rd | 65 ++- koRpus-0.13-5/koRpus/man/read.BAWL.Rd | 7 koRpus-0.13-5/koRpus/man/read.corp.LCC.Rd | 21 - koRpus-0.13-5/koRpus/man/read.corp.celex.Rd | 11 koRpus-0.13-5/koRpus/man/read.corp.custom-methods.Rd | 31 + koRpus-0.13-5/koRpus/man/readability-methods.Rd | 44 +- koRpus-0.13-5/koRpus/man/readability.num.Rd | 47 +- koRpus-0.13-5/koRpus/man/set.kRp.env.Rd | 10 koRpus-0.13-5/koRpus/man/set.lang.support.Rd | 22 + koRpus-0.13-5/koRpus/man/summary-methods.Rd | 50 ++ koRpus-0.13-5/koRpus/man/textFeatures.Rd | 17 koRpus-0.13-5/koRpus/man/textTransform-methods.Rd | 27 + koRpus-0.13-5/koRpus/man/tokenize-methods.Rd | 91 ++--- koRpus-0.13-5/koRpus/man/treetag-methods.Rd | 38 +- koRpus-0.13-5/koRpus/man/types.tokens-methods.Rd | 17 koRpus-0.13-5/koRpus/tests/testthat/sample_text_readability_dput.txt | 2 koRpus-0.13-5/koRpus/vignettes/koRpus_vignette.Rmd | 2 89 files changed, 1797 insertions(+), 914 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-12 0.4.0
2018-04-30 0.3.0
2016-12-07 0.2.0
2016-05-06 0.1.0
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ' library. Use is made of classes defined in the 'sp' package. Raster and vector map data can be imported into R, and raster and vector 'sp' objects exported. The 'GDAL' and 'PROJ' libraries are external to the package, and, when installing the package from source, must be correctly installed first; it is important that 'GDAL' < 3 be matched with 'PROJ' < 6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3, 'PROJ' >=6 and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019' strings, not 'PROJ' strings. 'Windows' and 'macOS' binaries (including 'GDAL', 'PROJ' and their dependencies) are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Daniel Baston [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.5-21 dated 2021-01-27 and 1.5-22 dated 2021-02-02
ChangeLog | 2221 +++++++++++++------------- DESCRIPTION | 8 MD5 | 40 NEWS.md | 8 R/make_EPSG.R | 2 R/project.R | 57 configure | 18 inst/ChangeLog | 2221 +++++++++++++------------- inst/SVN_VERSION | 2 inst/doc/CRS_projections_transformations.html | 20 inst/doc/OGR_shape_encoding.pdf |binary inst/doc/PROJ6_GDAL3.html | 30 man/project.Rd | 16 man/spTransform-methods.Rd | 2 src/Makevars.win | 10 src/ogr_proj.cpp | 2 src/proj6.cpp | 39 src/projectit.cpp | 3 tests/test_proj.Rout.save | 14 tests/tripup.R | 2 tests/tripup.Rout.save | 4 21 files changed, 2531 insertions(+), 2188 deletions(-)
Title: Counterfactual Decomposition: MC Integration of the G-Formula
Description: Provides a set of functions for counterfactual decomposition (cfdecomp). The functions available in this package decompose differences in an outcome attributable to a mediating variable (or sets of mediating variables) between groups based on counterfactual (causal inference) theory. By using Monte Carlo (MC) integration (simulations based on empirical estimates from multivariable models) we provide added flexibility compared to existing (analytical) approaches, at the cost of computational power or time. The added flexibility means that we can decompose difference between groups in any outcome or and with any mediator (any variable type and distribution). See Sudharsanan & Bijlsma (2019) <doi:10.4054/MPIDR-WP-2019-004> for more information.
Author: Maarten Jacob Bijlsma [aut, cre],
Nikkil Sudharsanan [aut],
Peng Li [ctb]
Maintainer: Maarten Jacob Bijlsma <maarten.bijlsma@gmail.com>
Diff between cfdecomp versions 0.2.0 dated 2020-05-01 and 0.3.0 dated 2021-02-02
DESCRIPTION | 8 ++--- MD5 | 52 +++++++++++++++++++------------------- NEWS.md | 4 ++ R/cluster.resample.R | 4 -- README.md | 29 ++++++++++----------- man/cfd.mean.Rd | 4 +- man/cfd.quantile.Rd | 4 +- man/cfd.semipar.quantile.Rd | 4 +- man/conv.mean.Rd | 34 ++++++++++++------------ man/figures/README-example-1.png |binary man/figures/README-example-10.png |binary man/figures/README-example-11.png |binary man/figures/README-example-12.png |binary man/figures/README-example-13.png |binary man/figures/README-example-14.png |binary man/figures/README-example-15.png |binary man/figures/README-example-16.png |binary man/figures/README-example-17.png |binary man/figures/README-example-18.png |binary man/figures/README-example-2.png |binary man/figures/README-example-3.png |binary man/figures/README-example-4.png |binary man/figures/README-example-5.png |binary man/figures/README-example-6.png |binary man/figures/README-example-7.png |binary man/figures/README-example-8.png |binary man/figures/README-example-9.png |binary 27 files changed, 73 insertions(+), 70 deletions(-)
Title: Workflow for Open Reproducible Code in Science
Description: Create reproducible and transparent research projects in 'R'.
This package is based on the Workflow for Open
Reproducible Code in Science (WORCS), a step-by-step procedure based on best
practices for
Open Science. It includes an 'RStudio' project template, several
convenience functions, and all dependencies required to make your project
reproducible and transparent. WORCS is explained in the tutorial paper
by Van Lissa, Brandmaier, Brinkman, Lamprecht, Struiksma, & Vreede (2020).
<doi:10.17605/OSF.IO/ZCVBS>.
Author: Caspar J. van Lissa [aut, cre]
(<https://orcid.org/0000-0002-0808-5024>),
Aaron Peikert [aut] (<https://orcid.org/0000-0001-7813-818X>),
Andreas M. Brandmaier [aut] (<https://orcid.org/0000-0001-8765-6982>)
Maintainer: Caspar J. van Lissa <c.j.vanlissa@uu.nl>
Diff between worcs versions 0.1.7 dated 2021-01-21 and 0.1.8 dated 2021-02-02
DESCRIPTION | 9 +++--- MD5 | 48 +++++++++++++++++----------------- NAMESPACE | 1 R/citations.R | 42 ++++++++++++++++-------------- R/codebook.R | 24 +++++++++-------- R/save_load.R | 2 - build/vignette.rds |binary inst/doc/citation.Rmd | 2 - inst/doc/git_cloud.Rmd | 2 - inst/doc/reproduce.Rmd | 2 - inst/doc/setup-docker.Rmd | 2 - inst/doc/setup.Rmd | 2 - inst/doc/workflow.Rmd | 2 - man/cite_all.Rd | 20 ++++++++------ man/cite_essential.Rd | 20 ++++++++------ man/codebook.Rd | 24 +++++++++-------- man/open_data.Rd | 2 - tests/testthat/test-citations.R | 35 +++++++++++++------------ tests/testthat/test-codebook.R | 55 +++++++++++++++++++++------------------- vignettes/citation.Rmd | 2 - vignettes/git_cloud.Rmd | 2 - vignettes/reproduce.Rmd | 2 - vignettes/setup-docker.Rmd | 2 - vignettes/setup.Rmd | 2 - vignettes/workflow.Rmd | 2 - 25 files changed, 163 insertions(+), 143 deletions(-)
Title: Psychrometric Properties of Moist and Dry Air
Description: Implementation of 'PsychroLib'
<https://github.com/psychrometrics/psychrolib> library which contains
functions to enable the calculation properties of moist and dry air in both
metric (SI) and imperial (IP) systems of units. References: Meyer, D. and
Thevenard, D (2019) <doi:10.21105/joss.01137>.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>),
The PsychroLib Contributors [ctb, cph] (Authors listed in
inst/PSYCHROLIB_AUTHORS.txt),
ASHRAE [cph] (Copyright 2017 ASHRAE Handbook Fundamentals
(https://www.ashrae.org) for equations and coefficients published
ASHRAE Handbook Fundamentals Chapter 1.)
Maintainer: Hongyuan Jia <hongyuan.jia@bears-berkeley.sg>
Diff between psychrolib versions 2.5.0 dated 2020-04-12 and 2.5.1 dated 2021-02-02
DESCRIPTION | 8 +-- LICENSE | 4 - MD5 | 10 +-- NAMESPACE | 104 ++++++++++++++++++++-------------------- R/RcppExports.R | 38 +++++++------- README.md | 144 ++++++++++++++++++++++++++++---------------------------- 6 files changed, 154 insertions(+), 154 deletions(-)
Title: Vectorised Probability Distributions
Description: Vectorised distribution objects with tools for manipulating,
visualising, and using probability distributions. Designed to allow model
prediction outputs to return distributions rather than their parameters,
allowing users to directly interact with predictive distributions in a
data-oriented workflow. In addition to providing generic replacements for
p/d/q/r functions, other useful statistics can be computed including means,
variances, intervals, and highest density regions.
Author: Mitchell O'Hara-Wild [aut, cre]
(<https://orcid.org/0000-0001-6729-7695>),
Earo Wang [ctb] (<https://orcid.org/0000-0001-6448-5260>),
Matthew Kay [ctb] (<https://orcid.org/0000-0001-9446-0419>),
Alex Hayes [aut] (<https://orcid.org/0000-0002-4985-5160>)
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between distributional versions 0.2.1 dated 2020-10-06 and 0.2.2 dated 2021-02-02
DESCRIPTION | 6 +++--- MD5 | 20 +++++++++++--------- NAMESPACE | 3 +++ NEWS.md | 12 ++++++++++++ R/dist_missing.R | 18 ++++++++++++++---- R/distribution.R | 25 ++++++++++++++++++++++++- R/utils.R | 2 ++ README.md | 19 +++++++------------ build/distributional.pdf |binary man/is-distribution.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-distribution.R |only 12 files changed, 76 insertions(+), 29 deletions(-)
More information about distributional at CRAN
Permanent link
Title: Easy Parallel Tools
Description: Utility functions for easy parallelism in R. Include some reexports
from other packages, utility functions for splitting and parallelizing over
blocks, and choosing and setting the number of cores used.
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigparallelr versions 0.3.0 dated 2020-11-04 and 0.3.1 dated 2021-02-02
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/nb-cores.R | 12 ++---------- 3 files changed, 8 insertions(+), 16 deletions(-)
Title: Probabilistic Supervised Learning for 'mlr3'
Description: Provides extensions for probabilistic supervised
learning for 'mlr3'. This includes extending the regression task to
probabilistic and interval regression, adding a survival task, and
other specialized models, predictions, and measures. mlr3extralearners is available
from <https://github.com/mlr-org/mlr3extralearners>.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Nurul Ain Toha [ctb],
Andreas Bender [ctb] (<https://orcid.org/0000-0001-5628-8611>)
Maintainer: Raphael Sonabend <raphael.sonabend.15@ucl.ac.uk>
Diff between mlr3proba versions 0.2.6 dated 2020-12-04 and 0.3.0 dated 2021-02-02
mlr3proba-0.2.6/mlr3proba/tests/testthat/Rplots.pdf |only mlr3proba-0.3.0/mlr3proba/DESCRIPTION | 8 mlr3proba-0.3.0/mlr3proba/MD5 | 40 +- mlr3proba-0.3.0/mlr3proba/NEWS.md | 7 mlr3proba-0.3.0/mlr3proba/R/LearnerDensHistogram.R | 5 mlr3proba-0.3.0/mlr3proba/R/LearnerDensKDE.R | 5 mlr3proba-0.3.0/mlr3proba/R/PredictionDataDens.R | 23 + mlr3proba-0.3.0/mlr3proba/R/PredictionDens.R | 22 + mlr3proba-0.3.0/mlr3proba/R/TaskSurv.R | 111 ++++++-- mlr3proba-0.3.0/mlr3proba/R/bibentries.R | 6 mlr3proba-0.3.0/mlr3proba/R/zzz.R | 5 mlr3proba-0.3.0/mlr3proba/README.md | 19 + mlr3proba-0.3.0/mlr3proba/build/partial.rdb |binary mlr3proba-0.3.0/mlr3proba/inst/CITATION |only mlr3proba-0.3.0/mlr3proba/man/PredictionDens.Rd | 8 mlr3proba-0.3.0/mlr3proba/man/TaskSurv.Rd | 135 +++++++++- mlr3proba-0.3.0/mlr3proba/man/mlr_learners_dens.hist.Rd | 2 mlr3proba-0.3.0/mlr3proba/man/mlr_learners_dens.kde.Rd | 2 mlr3proba-0.3.0/mlr3proba/man/mlr_measures_surv.cindex.Rd | 2 mlr3proba-0.3.0/mlr3proba/tests/testthat/test_PredictionDens.R | 2 mlr3proba-0.3.0/mlr3proba/tests/testthat/test_TaskSurv.R | 21 - mlr3proba-0.3.0/mlr3proba/tests/testthat/test_pipelines.R | 107 +++---- 22 files changed, 381 insertions(+), 149 deletions(-)
Title: Categorical Regression Splines
Description: Regression splines that handle a mix of continuous and categorical (discrete) data often encountered in applied settings. I would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://www.sharcnet.ca>).
Author: Jeffrey S. Racine [aut, cre],
Zhenghua Nie [aut],
Brian D. Ripley [ctb] (stepCV.R)
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between crs versions 0.15-31.1 dated 2019-11-25 and 0.15-33 dated 2021-02-02
crs-0.15-31.1/crs/src/nomad_src/Exception.cpp |only crs-0.15-33/crs/CHANGELOG | 14 crs-0.15-33/crs/DESCRIPTION | 15 crs-0.15-33/crs/MD5 | 390 crs-0.15-33/crs/NAMESPACE | 2 crs-0.15-33/crs/R/clsd.R | 58 crs-0.15-33/crs/R/crs.R | 38 crs-0.15-33/crs/R/np.regression.glp.R | 38 crs-0.15-33/crs/R/zzz.R | 2 crs-0.15-33/crs/build/vignette.rds |binary crs-0.15-33/crs/data/Engel95.rda |binary crs-0.15-33/crs/data/cps71.rda |binary crs-0.15-33/crs/data/wage1.rda |binary crs-0.15-33/crs/inst/doc/crs.R | 1 crs-0.15-33/crs/inst/doc/crs.pdf |binary crs-0.15-33/crs/inst/doc/crs_faq.Rnw | 77 crs-0.15-33/crs/inst/doc/crs_faq.pdf |binary crs-0.15-33/crs/inst/doc/spline_primer.R | 1 crs-0.15-33/crs/inst/doc/spline_primer.Rnw | 4 crs-0.15-33/crs/inst/doc/spline_primer.pdf |binary crs-0.15-33/crs/man/clsd.Rd | 24 crs-0.15-33/crs/man/crs-package.Rd | 10 crs-0.15-33/crs/man/crs.Rd | 16 crs-0.15-33/crs/man/crsiv.Rd | 2 crs-0.15-33/crs/man/crsivderiv.Rd | 2 crs-0.15-33/crs/man/crssigtest.Rd | 6 crs-0.15-33/crs/man/data-Engel95.Rd | 6 crs-0.15-33/crs/man/data-wage1.Rd | 2 crs-0.15-33/crs/man/frscv.Rd | 25 crs-0.15-33/crs/man/frscvNOMAD.Rd | 27 crs-0.15-33/crs/man/gsl-bs.Rd | 2 crs-0.15-33/crs/man/krscv.Rd | 25 crs-0.15-33/crs/man/krscvNOMAD.Rd | 22 crs-0.15-33/crs/man/npglpreg.Rd | 11 crs-0.15-33/crs/man/snomadr.Rd | 6 crs-0.15-33/crs/man/tensor.prod.model.matrix.Rd | 2 crs-0.15-33/crs/man/uniquecombs.Rd | 2 crs-0.15-33/crs/src/Makevars | 35 crs-0.15-33/crs/src/mgcv.c | 4 crs-0.15-33/crs/src/nomad_src/Algo_Parameters.cpp |only crs-0.15-33/crs/src/nomad_src/Algo_Parameters.hpp |only crs-0.15-33/crs/src/nomad_src/Barrier.cpp | 86 crs-0.15-33/crs/src/nomad_src/Barrier.hpp | 84 crs-0.15-33/crs/src/nomad_src/Cache.cpp | 100 crs-0.15-33/crs/src/nomad_src/Cache.hpp | 92 crs-0.15-33/crs/src/nomad_src/Cache_File_Point.cpp | 84 crs-0.15-33/crs/src/nomad_src/Cache_File_Point.hpp | 84 crs-0.15-33/crs/src/nomad_src/Cache_Point.cpp | 84 crs-0.15-33/crs/src/nomad_src/Cache_Point.hpp | 84 crs-0.15-33/crs/src/nomad_src/Cache_Search.cpp | 84 crs-0.15-33/crs/src/nomad_src/Cache_Search.hpp | 85 crs-0.15-33/crs/src/nomad_src/Clock.cpp | 86 crs-0.15-33/crs/src/nomad_src/Clock.hpp | 105 crs-0.15-33/crs/src/nomad_src/Direction.cpp | 87 crs-0.15-33/crs/src/nomad_src/Direction.hpp | 100 crs-0.15-33/crs/src/nomad_src/Directions.cpp | 135 crs-0.15-33/crs/src/nomad_src/Directions.hpp | 108 crs-0.15-33/crs/src/nomad_src/Display.cpp | 103 crs-0.15-33/crs/src/nomad_src/Display.hpp | 924 - 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Title: Statistical Functions for the Design of Studies with Composite
Endpoints
Description: It has been designed to calculate the required sample size in randomized clinical trials with composite endpoints. This package also includes functions to calculate the probability of observing the composite endpoint and the expected effect on the composite endpoint, among others. The methods implemented can be found in Bofill & Gómez (2019) <doi:10.1002/sim.8092> and Gómez & Lagakos (2013) <doi:10.1002/sim.5547>.
Author: Marta Bofill Roig [aut, cre], Jordi Cortes Martinez [aut], Guadalupe Gomez Melis [ctb]
Maintainer: Marta Bofill Roig <marta.bofill.roig@upc.edu>
Diff between CompAREdesign versions 1.6 dated 2021-01-11 and 1.7 dated 2021-02-02
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++++++++++++-- NAMESPACE | 15 +++++++++++++++ R/CopulaSelection.R |only R/MarginalsSelection.R |only R/SStar.R |only R/Sstar_func_perc.R |only R/dClayton.R |only R/dFGM.R |only R/dFrank.R |only R/dGumbel.R |only R/dNormal.R |only R/effectsize_tte.R |only man/CopulaSelection.Rd |only man/MarginalsSelection.Rd |only man/Sstar.Rd |only man/Sstar_func_perc.Rd |only man/dClayton.Rd |only man/dFGM.Rd |only man/dFrank.Rd |only man/dGumbel.Rd |only man/dNormal.Rd |only man/effectsize_tte.Rd |only 23 files changed, 42 insertions(+), 7 deletions(-)
Title: Predictions using Shiny
Description: Creates 'shiny' application ('app.R') for making predictions based on lm(), glm(), or coxph() models.
Author: Jari Haukka [aut, cre]
Maintainer: Jari Haukka <jari.haukka@helsinki.fi>
Diff between shinyPredict versions 0.1.0 dated 2021-01-28 and 0.1.1 dated 2021-02-02
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- R/shinyPredict.R | 17 ++++++++++++++++- man/shinyPredict.Rd | 1 + 4 files changed, 25 insertions(+), 8 deletions(-)
Title: NHS Data Dictionary Toolset for NHS Lookups
Description: Providing a common set of simplified web scraping tools for working with the NHS Data Dictionary <https://datadictionary.nhs.uk/data_elements_overview.html>.
The intended usage is to access the data elements section of the NHS Data Dictionary to access key lookups.
The benefits of having it in this package are that the lookups are the live lookups on the website and will not need to be maintained.
This package was commissioned by the NHS-R community to provide this consistency of lookups.
Author: Gary Hutson
Maintainer: Gary Hutson <g.hutson@nhs.net>
Diff between NHSDataDictionaRy versions 0.1.2 dated 2021-01-25 and 1.2.0 dated 2021-02-02
DESCRIPTION | 6 +-- MD5 | 14 ++++---- R/nhs_data_elements.R | 29 +++++++++++------ inst/doc/introduction.R | 7 +++- inst/doc/introduction.Rmd | 10 +++++- inst/doc/introduction.html | 73 +++++++++++++++++++++++++-------------------- man/nhs_data_elements.Rd | 5 +-- vignettes/introduction.Rmd | 10 +++++- 8 files changed, 97 insertions(+), 57 deletions(-)
More information about NHSDataDictionaRy at CRAN
Permanent link
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates weights to form equivalent groups in observational studies with point or longitudinal treatments by easing and extending the functionality of the R packages 'twang' for generalized boosted modeling (McCaffrey, Ridgeway & Morral, 2004) <doi:10.1037/1082-989X.9.4.403>, 'CBPS' for covariate balancing propensity score weighting (Imai & Ratkovic, 2014) <doi:10.1111/rssb.12027>, 'ebal' for entropy balancing (Hainmueller, 2012) <doi:10.1093/pan/mpr025>, 'optweight' for optimization-based weights (Zubizarreta, 2015) <doi:10.1080/01621459.2015.1023805>, 'ATE' for empirical balancing calibration weighting (Chan, Yam, & Zhang, 2016) <doi:10.1111/rssb.12129>, 'SuperLearner' for stacked machine learning-based propensity scores (Pirracchio, Petersen, & van der Laan, 2015) <doi:10.1093/aje/kwu253>, among others. Also allows for assessment of weights and checking of covariate balance by interfacing directly with 'cobalt'.
Author: Noah Greifer [aut, cre] (<https://orcid.org/0000-0003-3067-7154>)
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 0.10.2 dated 2020-08-27 and 0.11.0 dated 2021-02-02
WeightIt-0.10.2/WeightIt/man/method-cbps.Rd |only WeightIt-0.10.2/WeightIt/man/method-ebal.Rd |only WeightIt-0.10.2/WeightIt/man/method-ebcw.Rd |only WeightIt-0.10.2/WeightIt/man/method-energy.Rd |only WeightIt-0.10.2/WeightIt/man/method-gbm.Rd |only WeightIt-0.10.2/WeightIt/man/method-npcbps.Rd |only WeightIt-0.10.2/WeightIt/man/method-optweight.Rd |only WeightIt-0.10.2/WeightIt/man/method-ps.Rd |only WeightIt-0.10.2/WeightIt/man/method-super.Rd |only WeightIt-0.10.2/WeightIt/man/method-twang.Rd |only WeightIt-0.10.2/WeightIt/man/method-user.Rd |only WeightIt-0.11.0/WeightIt/DESCRIPTION | 21 WeightIt-0.11.0/WeightIt/MD5 | 86 - WeightIt-0.11.0/WeightIt/NAMESPACE | 2 WeightIt-0.11.0/WeightIt/NEWS.md | 26 WeightIt-0.11.0/WeightIt/R/SHARED.R | 33 WeightIt-0.11.0/WeightIt/R/balance.criteria.R | 6 WeightIt-0.11.0/WeightIt/R/functions_for_processing.R | 233 +-- WeightIt-0.11.0/WeightIt/R/ps.cont.R | 20 WeightIt-0.11.0/WeightIt/R/utilities.R | 8 WeightIt-0.11.0/WeightIt/R/weightit.R | 195 +- WeightIt-0.11.0/WeightIt/R/weightit.fit.R | 125 + WeightIt-0.11.0/WeightIt/R/weightit2method.R | 1372 ++++++++++-------- WeightIt-0.11.0/WeightIt/R/weightitMSM.R | 124 - WeightIt-0.11.0/WeightIt/README.md | 134 - WeightIt-0.11.0/WeightIt/build/partial.rdb |binary WeightIt-0.11.0/WeightIt/build/vignette.rds |binary WeightIt-0.11.0/WeightIt/inst/doc/WeightIt.R | 16 WeightIt-0.11.0/WeightIt/inst/doc/WeightIt.Rmd | 24 WeightIt-0.11.0/WeightIt/inst/doc/WeightIt.html | 613 ++------ WeightIt-0.11.0/WeightIt/man/ESS.Rd | 2 WeightIt-0.11.0/WeightIt/man/as.weightit.Rd | 4 WeightIt-0.11.0/WeightIt/man/figures |only WeightIt-0.11.0/WeightIt/man/get_w_from_ps.Rd | 8 WeightIt-0.11.0/WeightIt/man/macros |only WeightIt-0.11.0/WeightIt/man/make_full_rank.Rd | 6 WeightIt-0.11.0/WeightIt/man/method_bart.Rd |only WeightIt-0.11.0/WeightIt/man/method_cbps.Rd |only WeightIt-0.11.0/WeightIt/man/method_ebal.Rd |only WeightIt-0.11.0/WeightIt/man/method_ebcw.Rd |only WeightIt-0.11.0/WeightIt/man/method_energy.Rd |only WeightIt-0.11.0/WeightIt/man/method_gbm.Rd |only WeightIt-0.11.0/WeightIt/man/method_npcbps.Rd |only WeightIt-0.11.0/WeightIt/man/method_optweight.Rd |only WeightIt-0.11.0/WeightIt/man/method_ps.Rd |only WeightIt-0.11.0/WeightIt/man/method_super.Rd |only WeightIt-0.11.0/WeightIt/man/method_twang.Rd |only WeightIt-0.11.0/WeightIt/man/method_user.Rd |only WeightIt-0.11.0/WeightIt/man/ps.cont.Rd | 4 WeightIt-0.11.0/WeightIt/man/sbps.Rd | 14 WeightIt-0.11.0/WeightIt/man/stop.method.Rd | 16 WeightIt-0.11.0/WeightIt/man/summary.weightit.Rd | 20 WeightIt-0.11.0/WeightIt/man/trim.Rd | 6 WeightIt-0.11.0/WeightIt/man/weightit.Rd | 32 WeightIt-0.11.0/WeightIt/man/weightit.fit.Rd |only WeightIt-0.11.0/WeightIt/man/weightitMSM.Rd | 20 WeightIt-0.11.0/WeightIt/vignettes/WeightIt.Rmd | 24 57 files changed, 1708 insertions(+), 1486 deletions(-)
Title: Curriculum Vitae for R Markdown
Description: Provides templates and functions to simplify the production and maintenance of curriculum vitae.
Author: Mitchell O'Hara-Wild [aut, cre]
(<https://orcid.org/0000-0001-6729-7695>),
Rob Hyndman [aut] (<https://orcid.org/0000-0002-2140-5352>),
Yihui Xie [ctb] (<https://orcid.org/0000-0003-0645-5666>),
Albert Krewinkel [cph] (Multiple bibliographies lua filter),
JooYoung Seo [ctb] (<https://orcid.org/0000-0002-4064-6012>)
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vitae versions 0.4.0 dated 2021-01-28 and 0.4.1 dated 2021-02-02
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/preview.R | 20 +------------------- tests/testthat/test-entries.R | 2 +- 5 files changed, 16 insertions(+), 28 deletions(-)
Title: Determine Thermal Vegetation Periods
Description: Collection of common methods to determine growing season length in
a simple manner. Start and end dates of the vegetation periods are calculated
solely based on daily mean temperatures and the day of the year.
Author: Robert Nuske [aut, cre] (<https://orcid.org/0000-0001-9773-2061>)
Maintainer: Robert Nuske <robert.nuske@nw-fva.de>
Diff between vegperiod versions 0.3.0 dated 2020-08-25 and 0.3.1 dated 2021-02-02
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NEWS.md | 4 ++++ R/veg_ends.R | 5 +++-- R/vegperiod.R | 6 ++++-- README.md | 7 ++++--- build/partial.rdb |binary inst/tinytest/md_2006.RData |only inst/tinytest/test_DWD_stuff.R | 2 +- inst/tinytest/test_veg_ends.R | 2 +- inst/tinytest/test_veg_vegperiod.R | 20 +++++++++++++++++++- 11 files changed, 49 insertions(+), 22 deletions(-)
Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.0.0 dated 2021-01-22 and 1.1.0 dated 2021-02-02
DESCRIPTION | 14 MD5 | 45 +- NEWS.md | 5 R/Misc_fun.R | 40 -- R/RCM_data.R | 28 + R/RCM_int.R | 94 ++---- R/RCM_rmd.R |only R/assess_SSS.R | 4 R/define_S4_class_RCModel.R | 608 --------------------------------------- R/define_S4_generic_RCM.R | 11 inst/doc/Delay_difference.html | 4 inst/doc/RCM.html | 4 inst/doc/RCM_eq.html | 4 inst/doc/RCM_sel.html | 4 inst/doc/SAMtool.html | 8 inst/doc/SCA.html | 4 inst/doc/Surplus_production.html | 4 inst/doc/VPA.html | 4 inst/include/RCM.hpp | 53 +-- inst/include/SCA.hpp | 5 inst/include/SCA2.hpp | 7 inst/include/SCA_Pope.hpp | 7 inst/include/SCA_RWM.hpp | 5 inst/include/VPA.hpp | 4 24 files changed, 176 insertions(+), 790 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.12.0 dated 2021-01-07 and 0.12.1 dated 2021-02-02
DESCRIPTION | 8 +- MD5 | 12 +-- NEWS.md | 4 + inst/doc/introduction.html | 160 ++++++++++++++++++++++----------------------- src/precrec_misc.cpp | 14 +++ src/precrec_misc.h | 7 + src/precrec_mmx.cpp | 2 7 files changed, 114 insertions(+), 93 deletions(-)
Title: Information Matrices for 'lmeStruct' and 'glsStruct' Objects
Description: Provides analytic derivatives and information matrices for
fitted linear mixed effects (lme) models and generalized least squares (gls) models
estimated using lme() (from package 'nlme') and gls() (from package 'nlme'), respectively.
The package includes functions for estimating the sampling variance-covariance of variance
component parameters using the inverse Fisher information. The variance components include
the parameters of the random effects structure (for lme models), the variance structure,
and the correlation structure. The expected and average forms of the Fisher information matrix
are used in the calculations, and models estimated by full maximum likelihood or
restricted maximum likelihood are supported. The package also includes a function for estimating
standardized mean difference effect sizes (Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>)
based on fitted lme or gls models.
Author: James Pustejovsky [aut] (<https://orcid.org/0000-0003-0591-9465>),
Man Chen [aut, cre]
Maintainer: Man Chen <manchen9005@gmail.com>
Diff between lmeInfo versions 0.1.2 dated 2020-11-12 and 0.1.3 dated 2021-02-02
DESCRIPTION | 6 MD5 | 15 R/data-documentation.R | 3 R/g_mlm.R | 3 build/partial.rdb |only inst/doc/Information-matrices-for-fitted-LME-models.html | 323 ++------------- man/Bryant2016.Rd | 3 man/g_mlm.Rd | 3 tests/testthat/test-against-merDeriv.R | 3 9 files changed, 64 insertions(+), 295 deletions(-)
Title: Simply Beautiful PDF Letters from Markdown
Description: Write beautiful yet customizable letters in R Markdown and
directly obtain the finished PDF. Smooth generation of PDFs is realized by
'rmarkdown', the 'pandoc-letter' template and the 'KOMA-Script' letter class.
'KOMA-Script' provides enhanced replacements for the standard 'LaTeX' classes
with emphasis on typography and versatility. 'KOMA-Script' is particularly
useful for international writers as it handles various paper formats well,
provides layouts for many common window envelope types (e.g. German, US,
French, Japanese) and lets you define your own layouts. The package comes
with a default letter layout based on 'DIN 5008B'.
Author: Robert Nuske [aut, cre] (<https://orcid.org/0000-0001-9773-2061>),
Dirk Eddelbuettel [aut] (<https://orcid.org/0000-0001-6419-907X>),
Aaron Wolen [aut] (<https://orcid.org/0000-0003-2542-2202>)
Maintainer: Robert Nuske <robert.nuske@nw-fva.de>
Diff between komaletter versions 0.4 dated 2020-06-29 and 0.4.2 dated 2021-02-02
DESCRIPTION | 21 - MD5 | 40 +- NEWS.md | 8 R/komaletter.R | 23 - README.md | 101 ++--- build/vignette.rds |binary inst/doc/intro.Rmd | 11 inst/doc/intro.html | 45 +- inst/doc/letter_example1.pdf |binary inst/doc/letter_example2.Rmd | 6 inst/doc/letter_example2.pdf |binary inst/doc/letter_example3.pdf |binary inst/doc/letter_example4.pdf |binary inst/doc/parameterized_letter.Rmd | 9 inst/doc/parameterized_letter.html | 197 ++++------ inst/rmarkdown/templates/pdf/resources/maintainersDelight.lco | 3 inst/rmarkdown/templates/pdf/resources/template.tex | 9 man/komaletter.Rd | 14 vignettes/intro.Rmd | 11 vignettes/letter_example2.Rmd | 6 vignettes/parameterized_letter.Rmd | 9 21 files changed, 286 insertions(+), 227 deletions(-)
Title: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Description: Create interactive cluster 'heatmaps' that can be saved as a stand-
alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and
available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to
show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical
method for visualizing high-dimensional data, in which a table of numbers
are encoded as a grid of colored cells. The rows and columns of the matrix
are ordered to highlight patterns and are often accompanied by 'dendrograms'.
'Heatmaps' are used in many fields for visualizing observations, correlations,
missing values patterns, and more. Interactive 'heatmaps' allow the inspection
of specific value by hovering the mouse over a cell, as well as zooming into
a region of the 'heatmap' by dragging a rectangle around the relevant area.
This work is based on the 'ggplot2' and 'plotly.js' engine. It produces
similar 'heatmaps' to 'heatmap.2' with the advantage of speed
('plotly.js' is able to handle larger size matrix), the ability to zoom from
the 'dendrogram' panes, and the placing of factor variables in the sides of the
'heatmap'.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Alan O'Callaghan [aut] (https://github.com/Alanocallaghan),
Jonathan Sidi [ctb] (https://github.com/yonicd),
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between heatmaply versions 1.2.0 dated 2021-01-29 and 1.2.1 dated 2021-02-02
DESCRIPTION | 8 MD5 | 16 NAMESPACE | 1 NEWS | 7 R/heatmaply.R | 13 inst/doc/heatmaply.R | 14 inst/doc/heatmaply.Rmd | 5 inst/doc/heatmaply.html | 1047 ++++++++++++++++++++++++++++++++++++++++++++---- vignettes/heatmaply.Rmd | 5 9 files changed, 1001 insertions(+), 115 deletions(-)
Title: Plot Multiple Sequence Alignment using 'ggplot2'
Description: Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
Lang Zhou [aut],
Huina Huang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggmsa versions 0.0.5 dated 2021-01-06 and 0.0.6 dated 2021-02-02
DESCRIPTION | 6 +-- MD5 | 37 +++++++++--------- NEWS.md | 10 +++++ R/color_else.R | 23 +++++++---- R/cons.R | 8 +--- R/facet_msa.R | 13 +++++- R/geom_msa.R | 23 +++++------ R/ggmsa.R | 10 +++-- R/methods-ggplot_add.R | 22 ++++++----- R/msa_data.R | 76 ++++++++++++++++++++++++++------------ R/seqlogo.R | 19 +++++---- R/theme_msa.R | 16 ++++++++ inst/doc/ggmsa.html | 16 ++++---- man/color_scheme.Rd | 4 +- man/figures/unnamed-chunk-6-1.png |binary man/figures/unnamed-chunk-7-1.png |only man/geom_msa.Rd | 10 +++++ man/geom_seqlogo.Rd | 3 + man/ggmsa.Rd | 6 +++ man/seqlogo.Rd | 5 ++ 20 files changed, 204 insertions(+), 103 deletions(-)
Title: Environmental Interpolation using Spatial Kernel Density
Estimation
Description: Estimates an ecological niche using occurrence data, covariates, and kernel
density-based estimation methods. For a single species with presence and absence data,
the 'envi' package uses the spatial relative risk function that is estimated using the
'sparr' package. Details about the 'sparr' package methods can be found in the tutorial:
Davies et al. (2018) <doi:10.1002/sim.7577>. Details about kernel density estimation can
be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>. More information about
relative risk functions using kernel density estimation can be found in J. F. Bithell
(1991) <doi:10.1002/sim.4780101112>.
Author: Ian D. Buller [aut, cre, cph] (<https://orcid.org/0000-0001-9477-8582>),
Lance A. Waller [ctb, ths] (<https://orcid.org/0000-0001-5002-8886>),
Emory University [cph]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>
Diff between envi versions 0.1.6 dated 2021-01-07 and 0.1.7 dated 2021-02-02
DESCRIPTION | 10 +-- MD5 | 56 ++++++++++--------- NAMESPACE | 23 ++++--- NEWS.md | 10 ++- R/lrren.R | 68 +++++++++++++---------- R/package.R | 7 +- R/perlrren.R | 107 +++++++++++++++++++++---------------- R/plot_cv.R | 22 +++---- R/plot_obs.R | 44 +++++++-------- R/plot_perturb.R | 24 ++++---- R/plot_predict.R | 28 ++++----- R/pval_correct.R |only README.md | 86 +++++++++++++++++++++-------- build/partial.rdb |binary man/envi-package.Rd | 2 man/figures/plot_obs4.png |only man/figures/plot_predict3.png |only man/lrren.Rd | 28 ++++++--- man/perlrren.Rd | 24 +++++--- man/plot_cv.Rd | 22 +++---- man/plot_obs.Rd | 28 ++++----- man/plot_perturb.Rd | 14 ++-- man/plot_predict.Rd | 22 +++---- man/pval_correct.Rd |only tests/testthat/test-lrren.R | 49 +++++++++++----- tests/testthat/test-perlrren.R | 43 +++++++++----- tests/testthat/test-plot_cv.R | 29 +++++----- tests/testthat/test-plot_obs.R | 29 +++++----- tests/testthat/test-plot_perturb.R | 17 +++-- tests/testthat/test-plot_predict.R | 29 +++++----- vignettes/vignette.Rmd | 72 ++++++++++++------------ 31 files changed, 510 insertions(+), 383 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>),
Mark Raasveldt [aut] (<https://orcid.org/0000-0001-5005-6844>),
DuckDB Contributors [aut],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Zverovich [cph],
RAD Game Tools [cph],
Valve Software [cph],
Rich Geldreich [cph],
Tenacious Software LLC [cph],
The RE2 Authors [cph],
Google Inc. [cph],
Facebook Inc. [cph],
Steven G. Johnson [cph],
Jiahao Chen [cph],
Tony Kelman [cph],
Jonas Fonseca [cph],
Lukas Fittl [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>
Diff between duckdb versions 0.2.3 dated 2020-12-12 and 0.2.4 dated 2021-02-02
duckdb-0.2.3/duckdb/src/duckdb/src/common/types/numeric_helper.cpp |only duckdb-0.2.3/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/prepared_statement_catalog_entry.hpp |only duckdb-0.2.3/duckdb/src/duckdb/src/include/duckdb/common/types/numeric_helper.hpp |only duckdb-0.2.3/duckdb/src/duckdb/src/include/duckdb/main/connection_manager.hpp |only duckdb-0.2.3/duckdb/src/duckdb/src/include/duckdb/parser/statement/alter_table_statement.hpp |only duckdb-0.2.3/duckdb/src/duckdb/src/main/connection_manager.cpp |only duckdb-0.2.3/duckdb/src/duckdb/src/planner/binder/statement/bind_execute.cpp |only duckdb-0.2.4/duckdb/DESCRIPTION | 6 duckdb-0.2.4/duckdb/MD5 | 1549 duckdb-0.2.4/duckdb/src/Makevars | 4 duckdb-0.2.4/duckdb/src/duckdb/amalgamation-1.cpp | 14 duckdb-0.2.4/duckdb/src/duckdb/amalgamation-2.cpp | 30 duckdb-0.2.4/duckdb/src/duckdb/amalgamation-3.cpp | 36 duckdb-0.2.4/duckdb/src/duckdb/amalgamation-4.cpp | 42 duckdb-0.2.4/duckdb/src/duckdb/amalgamation-5.cpp | 66 duckdb-0.2.4/duckdb/src/duckdb/amalgamation-6.cpp | 50 duckdb-0.2.4/duckdb/src/duckdb/amalgamation-7.cpp | 26 duckdb-0.2.4/duckdb/src/duckdb/amalgamation-8.cpp | 8 duckdb-0.2.4/duckdb/src/duckdb/extension/extension_helper.hpp |only duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/column_reader.cpp |only duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/include/column_reader.hpp |only duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 47 duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/include/parquet_rle_bp_decoder.hpp | 28 duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/include/parquet_statistics.hpp |only duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/include/parquet_support.hpp |only duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/include/parquet_timestamp.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/include/resizable_buffer.hpp | 26 duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/include/thrift_tools.hpp |only duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp | 34 duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 1153 duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp |only duckdb-0.2.4/duckdb/src/duckdb/extension/parquet/parquet_timestamp.cpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog.cpp | 97 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry/copy_function_catalog_entry.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry/macro_catalog_entry.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry/pragma_function_catalog_entry.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry/sequence_catalog_entry.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry/table_function_catalog_entry.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_entry/view_catalog_entry.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/checksum.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/common/constants.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/enums/catalog_type.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/common/enums/expression_type.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/common/enums/join_type.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 12 duckdb-0.2.4/duckdb/src/duckdb/src/common/enums/relation_type.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/common/enums/statement_type.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/common/exception.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/common/file_buffer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/file_system.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/common/fstream_util.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/gzip_stream.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/common/limits.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 682 duckdb-0.2.4/duckdb/src/duckdb/src/common/serializer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/serializer/buffered_deserializer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/serializer/buffered_file_reader.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/serializer/buffered_file_writer.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/common/serializer/buffered_serializer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/string_util.cpp | 27 duckdb-0.2.4/duckdb/src/duckdb/src/common/tree_renderer.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/common/types.cpp | 109 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/cast_helpers.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/common/types/chunk_collection.cpp | 28 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 49 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/date.cpp | 491 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/decimal.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/hash.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/hugeint.cpp | 30 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/interval.cpp | 181 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/null_value.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/selection_vector.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/string_heap.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/time.cpp | 128 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/timestamp.cpp | 64 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/value.cpp | 124 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/vector.cpp | 73 duckdb-0.2.4/duckdb/src/duckdb/src/common/types/vector_buffer.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/common/value_operations/comparison_operations.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/common/value_operations/hash.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/common/value_operations/numeric_operations.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/boolean_operators.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/comparison_operators.cpp | 13 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/gather.cpp | 13 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/generators.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/null_operations.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/numeric_inplace_operators.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp | 151 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/vector_copy.cpp | 13 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp | 25 duckdb-0.2.4/duckdb/src/duckdb/src/common/vector_operations/vector_storage.cpp | 24 duckdb-0.2.4/duckdb/src/duckdb/src/execution/adaptive_filter.cpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 92 duckdb-0.2.4/duckdb/src/duckdb/src/execution/base_aggregate_hashtable.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/column_binding_resolver.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_between.cpp | 13 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp | 13 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_cast.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_conjunction.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_constant.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp | 18 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_operator.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_parameter.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor/execute_reference.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/expression_executor_state.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/index/art/art.cpp | 39 duckdb-0.2.4/duckdb/src/duckdb/src/execution/index/art/art_key.cpp | 21 duckdb-0.2.4/duckdb/src/duckdb/src/execution/index/art/leaf.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 58 duckdb-0.2.4/duckdb/src/duckdb/src/execution/merge_join/merge_join.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/execution/merge_join/merge_join_complex.cpp | 84 duckdb-0.2.4/duckdb/src/duckdb/src/execution/merge_join/merge_join_simple.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_inner.cpp | 13 duckdb-0.2.4/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_mark.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 53 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp | 43 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/aggregate/physical_simple_aggregate.cpp | 40 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/filter/physical_filter.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/helper/physical_execute.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/helper/physical_limit.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/helper/physical_pragma.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/helper/physical_prepare.cpp | 13 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_sample.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_comparison_join.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_cross_product.cpp | 112 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 15 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_join.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 66 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/projection/physical_projection.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 36 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/scan/physical_chunk_scan.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/scan/physical_dummy_scan.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/scan/physical_empty_result.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/scan/physical_expression_scan.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/scan/physical_table_scan.cpp | 34 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_alter.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_create_function.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_create_index.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_create_schema.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_create_sequence.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table.cpp | 27 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table_as.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_create_view.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/schema/physical_drop.cpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 18 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_operator.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_aggregate.cpp | 48 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_any_join.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_chunk_get.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_to_file.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_create_index.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_create_table.cpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_cross_product.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_delete.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_get.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_join.cpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_distinct.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_dummy_scan.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_empty_result.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_execute.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_explain.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_export.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_expression_get.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_filter.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_get.cpp | 31 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_insert.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_limit.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_order.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_pragma.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_prepare.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_projection.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_recursive_cte.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_sample.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_set_operation.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_show_select.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_simple.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_top_n.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_unnest.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_update.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/execution/reservoir_sample.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/algebraic/avg.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/algebraic/covar.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/algebraic/stddev.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/algebraic_functions.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/distributive/bitagg.cpp | 113 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 12 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/distributive/minmax.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/distributive/string_agg.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/distributive/sum.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/distributive_functions.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp | 24 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/holistic_functions.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/nested/list.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/function/aggregate/nested_functions.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/cast_rules.cpp | 71 duckdb-0.2.4/duckdb/src/duckdb/src/function/function.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/function/macro_function.cpp | 20 duckdb-0.2.4/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/function/pragma_function.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/date/age.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/date/current.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/date/date_part.cpp | 18 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/date/date_trunc.cpp | 28 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/date/epoch.cpp | 36 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/date/strftime.cpp | 18 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/date/to_interval.cpp | 36 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/date_functions.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/generic/alias.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/generic/constant_or_null.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/generic/least.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/generic/stats.cpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/generic/typeof.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/generic_functions.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/math/numeric.cpp | 70 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/math/random.cpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/math/setseed.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/math_functions.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/nested/list_value.cpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/nested/struct_extract.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/nested/struct_pack.cpp | 16 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/operators.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/operators/add.cpp | 43 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 32 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/operators/bitwise.cpp | 25 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/operators/multiply.cpp | 45 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/operators/subtract.cpp | 48 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/pragma_functions.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/sequence_functions.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/ascii.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/caseconvert.cpp | 16 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/chr.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/concat.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/contains.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/instr.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/left_right.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/length.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/like.cpp | 68 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/md5.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/nfc_normalize.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/pad.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/prefix.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/printf.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/regexp.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/repeat.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/replace.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/reverse.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/string_split.cpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/strip_accents.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/substring.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/suffix.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string/trim.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/string_functions.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/function/scalar/trigonometrics_functions.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/arrow.cpp | 49 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 21 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/glob.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/information_schema/information_schema_columns.cpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/information_schema/information_schema_schemata.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/information_schema/information_schema_tables.cpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/information_schema_functions.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/range.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/read_csv.cpp | 16 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/repeat.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/sqlite/pragma_collations.cpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/sqlite/pragma_database_list.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/sqlite/pragma_functions.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/function/table/sqlite/pragma_table_info.cpp | 15 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/sqlite/sqlite_master.cpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/sqlite_functions.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/table_scan.cpp | 23 duckdb-0.2.4/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb.h | 75 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 46 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/list.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/schema_catalog_entry.hpp | 39 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/constants.hpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/operator/add.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/operator/cast_operators.hpp | 181 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/operator/multiply.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/operator/subtract.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/pair.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/random_engine.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/serializer.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/to_string.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 25 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/cast_helpers.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp | 24 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/hugeint.hpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/null_value.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 19 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 71 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 15 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/common/winapi.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/base_aggregate_hashtable.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art_key.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/merge_join.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_simple_aggregate.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_prepare.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reservoir_sample.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_sample.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_cross_product.hpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table_as.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/execution/reservoir_sample.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/macro_function.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/scalar/math_functions.hpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 24 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/table/sqlite_functions.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 13 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/function/udf_function.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 52 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 123 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 103 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 54 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/extension.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/materialized_query_result.hpp | 21 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement.hpp | 33 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement_data.hpp | 22 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 39 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 37 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp | 107 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/main/stream_query_result.hpp | 30 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/optimizer/deliminator.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_combiner.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_pullup.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/expression_matcher.hpp | 12 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/in_clause_simplification.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/column_definition.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/common_table_expression_info.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/expression/function_expression.hpp | 15 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/expression/lambda_expression.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/expression/list.hpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 15 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/copy_info.hpp | 19 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_aggregate_function_info.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_collation_info.hpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_copy_function_info.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_index_info.hpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_info.hpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_macro_info.hpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_pragma_function_info.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_scalar_function_info.hpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_schema_info.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_sequence_info.hpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_function_info.hpp | 12 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_info.hpp | 16 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/drop_info.hpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/pragma_info.hpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/sample_options.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/show_select_info.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/parser.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/qualified_name.hpp | 56 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/query_error_context.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/query_node.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/query_node/select_node.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/sql_statement.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/alter_statement.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/call_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/copy_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/create_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/delete_statement.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/drop_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/execute_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/explain_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/export_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/insert_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/list.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/pragma_statement.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/prepare_statement.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/relation_statement.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/select_statement.hpp | 17 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/show_statement.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/transaction_statement.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/update_statement.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/statement/vacuum_statement.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/tableref.hpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/tokens.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp | 23 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 26 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/bound_tableref.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_aggregate_expression.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/joinside.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/logical_tokens.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/operator/list.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_comparison_join.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_execute.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_prepare.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_sample.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_show.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/planner.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/pragma_handler.hpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_select_node.hpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/planner/table_filter.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp |only duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_handle.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 61 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/meta_block_reader.hpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/numeric_segment.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/object_cache.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/string_segment.hpp | 35 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/uncompressed_segment.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp | 14 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_context.hpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_manager.hpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/main/appender.cpp | 72 duckdb-0.2.4/duckdb/src/duckdb/src/main/client_context.cpp | 407 duckdb-0.2.4/duckdb/src/duckdb/src/main/connection.cpp | 24 duckdb-0.2.4/duckdb/src/duckdb/src/main/database.cpp | 31 duckdb-0.2.4/duckdb/src/duckdb/src/main/duckdb-c.cpp | 26 duckdb-0.2.4/duckdb/src/duckdb/src/main/materialized_query_result.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/main/prepared_statement.cpp | 48 duckdb-0.2.4/duckdb/src/duckdb/src/main/prepared_statement_data.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/main/query_profiler.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/main/query_result.cpp | 28 duckdb-0.2.4/duckdb/src/duckdb/src/main/relation/limit_relation.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/main/stream_query_result.cpp | 20 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/column_lifetime_analyzer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/common_aggregate_optimizer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/cse_optimizer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/deliminator.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/expression_heuristics.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/expression_rewriter.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 523 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/filter_pullup.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/join_order/query_graph.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/join_order/relation.cpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/join_order_optimizer.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/matcher/expression_matcher.cpp | 9 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 20 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pullup |only duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_aggregate.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_cross_product.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_filter.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_get.cpp | 35 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_inner_join.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_left_join.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_mark_join.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_projection.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_set_operation.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_single_join.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/regex_range_filter.cpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 29 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/rule/arithmetic_simplification.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/rule/case_simplification.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/rule/comparison_simplification.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/rule/conjunction_simplification.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/rule/constant_folding.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/optimizer/rule/date_part_simplification.cpp | 5 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duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/default_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/function_expression.cpp | 32 duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/lambda_expression.cpp |only duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/operator_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/parameter_expression.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/star_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/subquery_expression.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/table_star_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression/window_expression.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/parser/expression_util.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/parser/parsed_data/alter_table_info.cpp | 36 duckdb-0.2.4/duckdb/src/duckdb/src/parser/parsed_data/sample_options.cpp |only 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duckdb-0.2.4/duckdb/src/duckdb/src/planner/binder/tableref/plan_basetableref.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/binder/tableref/plan_crossproductref.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/binder/tableref/plan_cteref.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/binder/tableref/plan_dummytableref.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/binder/tableref/plan_expressionlistref.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/binder/tableref/plan_joinref.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/binder/tableref/plan_subqueryref.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/binder/tableref/plan_table_function.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_aggregate_expression.cpp | 21 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_between_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_case_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_columnref_expression.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_comparison_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_conjunction_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_constant_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_function_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_operator_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_parameter_expression.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_reference_expression.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_subquery_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_unnest_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder.cpp | 5 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/aggregate_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/alter_binder.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/check_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/constant_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/group_binder.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/index_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/insert_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/order_binder.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/relation_binder.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/select_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/update_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_binder/where_binder.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/expression_iterator.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/planner/joinside.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/planner/logical_operator.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/logical_operator_visitor.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_aggregate.cpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_any_join.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_comparison_join.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_cross_product.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_distinct.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_empty_result.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_filter.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_join.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_projection.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_unnest.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/operator/logical_window.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/planner.cpp | 196 duckdb-0.2.4/duckdb/src/duckdb/src/planner/pragma_handler.cpp | 15 duckdb-0.2.4/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/planner/subquery/has_correlated_expressions.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/subquery/rewrite_correlated_expressions.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/planner/table_binding.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/block.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/buffer/buffer_handle.cpp | 7 duckdb-0.2.4/duckdb/src/duckdb/src/storage/buffer/buffer_list.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/buffer/managed_buffer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 423 duckdb-0.2.4/duckdb/src/duckdb/src/storage/checkpoint/table_data_reader.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 10 duckdb-0.2.4/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 35 duckdb-0.2.4/duckdb/src/duckdb/src/storage/column_data.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/data_table.cpp | 29 duckdb-0.2.4/duckdb/src/duckdb/src/storage/index.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/storage/local_storage.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/meta_block_reader.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/storage/meta_block_writer.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/numeric_segment.cpp | 180 duckdb-0.2.4/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/statistics/base_statistics.cpp | 8 duckdb-0.2.4/duckdb/src/duckdb/src/storage/statistics/segment_statistics.cpp | 4 duckdb-0.2.4/duckdb/src/duckdb/src/storage/storage_info.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/storage/storage_lock.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/storage_manager.cpp | 54 duckdb-0.2.4/duckdb/src/duckdb/src/storage/string_segment.cpp | 139 duckdb-0.2.4/duckdb/src/duckdb/src/storage/table/chunk_info.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/table/morsel_info.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/storage/table/persistent_segment.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/storage/table/segment_tree.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/storage/table/transient_segment.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/storage/uncompressed_segment.cpp | 64 duckdb-0.2.4/duckdb/src/duckdb/src/storage/wal_replay.cpp | 62 duckdb-0.2.4/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/transaction/commit_state.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/transaction/rollback_state.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/transaction/transaction.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/src/transaction/transaction_context.cpp | 11 duckdb-0.2.4/duckdb/src/duckdb/src/transaction/transaction_manager.cpp | 6 duckdb-0.2.4/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 3 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/include/nodes/nodes.hpp | 4 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 76 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/include/nodes/primnodes.hpp | 1 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 1818 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 7 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/include/parser/scanner.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/src_backend_nodes_makefuncs.cpp | 1 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/src_backend_nodes_value.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |25655 +++++----- duckdb-0.2.4/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_scan.cpp | 937 duckdb-0.2.4/duckdb/src/duckdb/third_party/thrift/thrift/transport/TBufferTransports.h | 2 duckdb-0.2.4/duckdb/src/duckdb/third_party/utf8proc/include/utf8proc.hpp | 2 duckdb-0.2.4/duckdb/src/duckdb/third_party/utf8proc/include/utf8proc_wrapper.hpp | 8 duckdb-0.2.4/duckdb/src/duckdb/third_party/utf8proc/utf8proc.cpp | 2 duckdb-0.2.4/duckdb/src/duckdb/third_party/utf8proc/utf8proc_wrapper.cpp | 12 duckdb-0.2.4/duckdb/src/duckdbr.cpp | 171 duckdb-0.2.4/duckdb/tests/testthat/helper-DBItest.R | 1 duckdb-0.2.4/duckdb/tests/testthat/test-DBItest.R | 17 duckdb-0.2.4/duckdb/tests/testthat/test_bind.R | 10 duckdb-0.2.4/duckdb/tests/testthat/test_readonly.R | 1 810 files changed, 23054 insertions(+), 19934 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <https://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Greg Freedman Ellis [aut, cre],
Jonathan Keane [aut],
Mike Malecki [aut],
Neal Richardson [aut],
Gordon Shotwell [aut]
Maintainer: Greg Freedman Ellis <greg@crunch.io>
Diff between crunch versions 1.27.5 dated 2020-09-15 and 1.27.7 dated 2021-02-02
crunch-1.27.5/crunch/man/makeArray.Rd |only crunch-1.27.5/crunch/vignettes/crunch/5/api/datasets/c25696/cube-669454.json |only crunch-1.27.7/crunch/DESCRIPTION | 8 crunch-1.27.7/crunch/MD5 | 177 +-- crunch-1.27.7/crunch/NAMESPACE | 6 crunch-1.27.7/crunch/R/AllClasses.R | 15 crunch-1.27.7/crunch/R/R-to-variable.R | 2 crunch-1.27.7/crunch/R/automation.R | 2 crunch-1.27.7/crunch/R/cube-collapse-dimensions.R | 1 crunch-1.27.7/crunch/R/cube-dims.R | 37 crunch-1.27.7/crunch/R/cube-result.R | 106 ++ crunch-1.27.7/crunch/R/dataset-stream.R | 9 crunch-1.27.7/crunch/R/dataset.R | 3 crunch-1.27.7/crunch/R/decks.R | 12 crunch-1.27.7/crunch/R/expressions.R | 6 crunch-1.27.7/crunch/R/formula.R | 75 + crunch-1.27.7/crunch/R/make-array.R | 99 +- crunch-1.27.7/crunch/R/new-dataset.R | 2 crunch-1.27.7/crunch/R/search.R | 2 crunch-1.27.7/crunch/R/show.R | 51 - crunch-1.27.7/crunch/R/slides.R | 141 ++ crunch-1.27.7/crunch/R/subvariables.R | 26 crunch-1.27.7/crunch/R/tab-book.R | 117 +- crunch-1.27.7/crunch/R/univariate.R | 10 crunch-1.27.7/crunch/R/variable-derivation.R | 21 crunch-1.27.7/crunch/R/variable-type.R | 17 crunch-1.27.7/crunch/R/variable.R | 4 crunch-1.27.7/crunch/inst/WORDLIST | 1 crunch-1.27.7/crunch/inst/crunch-test.R | 16 crunch-1.27.7/crunch/inst/doc/abstract-categories.html | 310 +----- crunch-1.27.7/crunch/inst/doc/analyze.html | 472 ++-------- crunch-1.27.7/crunch/inst/doc/array-variables.html | 278 ----- crunch-1.27.7/crunch/inst/doc/crunch-internals.Rmd | 22 crunch-1.27.7/crunch/inst/doc/crunch-internals.html | 228 ---- crunch-1.27.7/crunch/inst/doc/crunch.html | 332 +------ crunch-1.27.7/crunch/inst/doc/derive.html | 238 ----- crunch-1.27.7/crunch/inst/doc/export.html | 272 ----- crunch-1.27.7/crunch/inst/doc/filters.html | 282 ----- crunch-1.27.7/crunch/inst/doc/fork-and-merge.html | 282 ----- crunch-1.27.7/crunch/inst/doc/projects.html | 414 ++------ crunch-1.27.7/crunch/inst/doc/subtotals.html | 332 +------ crunch-1.27.7/crunch/inst/doc/variable-order.html | 322 +----- crunch-1.27.7/crunch/inst/doc/variables.html | 306 +----- crunch-1.27.7/crunch/inst/mocks.tgz |binary crunch-1.27.7/crunch/man/CrunchVariable.Rd | 2 crunch-1.27.7/crunch/man/Subvariables.Rd | 12 crunch-1.27.7/crunch/man/analysis-methods.Rd | 26 crunch-1.27.7/crunch/man/appendStream.Rd | 8 crunch-1.27.7/crunch/man/createDataset.Rd | 2 crunch-1.27.7/crunch/man/crunch-extract.Rd | 36 crunch-1.27.7/crunch/man/crunch-is.Rd | 9 crunch-1.27.7/crunch/man/cube-computing.Rd | 3 crunch-1.27.7/crunch/man/cubeMeasureType.Rd |only crunch-1.27.7/crunch/man/derivations.Rd | 21 crunch-1.27.7/crunch/man/deriveArray.Rd |only crunch-1.27.7/crunch/man/describe-catalog.Rd | 9 crunch-1.27.7/crunch/man/display-settings.Rd | 2 crunch-1.27.7/crunch/man/exportDeck.Rd | 4 crunch-1.27.7/crunch/man/expressions-internal.Rd | 2 crunch-1.27.7/crunch/man/expressions.Rd | 6 crunch-1.27.7/crunch/man/getDimTypes.Rd | 6 crunch-1.27.7/crunch/man/newSlide.Rd | 34 crunch-1.27.7/crunch/man/runCrunchAutomation.Rd | 2 crunch-1.27.7/crunch/man/searchDatasets.Rd | 2 crunch-1.27.7/crunch/man/settings.Rd | 3 crunch-1.27.7/crunch/man/tabBook.Rd | 3 crunch-1.27.7/crunch/man/toVariable.Rd | 2 crunch-1.27.7/crunch/man/unbind.Rd | 2 crunch-1.27.7/crunch/tests/spelling.R | 2 crunch-1.27.7/crunch/tests/testthat/app.crunch.io/api/datasets/1/multitables/apidocs-ca-mr-tabbook.json | 2 crunch-1.27.7/crunch/tests/testthat/app.crunch.io/api/datasets/1/multitables/apidocs-mr-ca-tabbook.json | 2 crunch-1.27.7/crunch/tests/testthat/test-cube-bases.R | 1 crunch-1.27.7/crunch/tests/testthat/test-cube-basic.R | 56 + crunch-1.27.7/crunch/tests/testthat/test-cube-dims.R | 15 crunch-1.27.7/crunch/tests/testthat/test-cube-errors.R | 22 crunch-1.27.7/crunch/tests/testthat/test-cube-mr.R | 37 crunch-1.27.7/crunch/tests/testthat/test-cube-with-expression.R | 38 crunch-1.27.7/crunch/tests/testthat/test-cubes.R | 7 crunch-1.27.7/crunch/tests/testthat/test-dataset-entity.R | 1 crunch-1.27.7/crunch/tests/testthat/test-decks.R | 95 ++ crunch-1.27.7/crunch/tests/testthat/test-derive-array.R | 15 crunch-1.27.7/crunch/tests/testthat/test-expressions.R | 74 + crunch-1.27.7/crunch/tests/testthat/test-formula.R | 85 + crunch-1.27.7/crunch/tests/testthat/test-make-array.R | 59 + crunch-1.27.7/crunch/tests/testthat/test-multitables.R | 248 ++--- crunch-1.27.7/crunch/tests/testthat/test-project-folder.R | 2 crunch-1.27.7/crunch/tests/testthat/test-subvariables.R | 48 - crunch-1.27.7/crunch/tests/testthat/test-variable-folders.R | 2 crunch-1.27.7/crunch/tests/testthat/test-variable-type.R | 4 crunch-1.27.7/crunch/vignettes/crunch-internals.Rmd | 22 crunch-1.27.7/crunch/vignettes/crunch/5/api/datasets/c25696/cube-3c9429.json |only crunch-1.27.7/crunch/vignettes/vignettes.RData |binary 92 files changed, 2253 insertions(+), 3836 deletions(-)
Title: Fast, Exact Bootstrap Principal Component Analysis for High
Dimensional Data
Description: Implements fast, exact bootstrap Principal Component Analysis and
Singular Value Decompositions for high dimensional data, as described in
<doi:10.1080/01621459.2015.1062383> (see also <arXiv:1405.0922> ). For data matrices that are too large to operate
on in memory, users can input objects with class 'ff' (see the 'ff'
package), where the actual data is stored on disk. In response, this
package will implement a block matrix algebra procedure for calculating the
principal components (PCs) and bootstrap PCs. Depending on options set by
the user, the 'parallel' package can be used to parallelize the calculation of
the bootstrap PCs.
Author: Aaron Fisher <afishe27@alumni.jh.edu>
Maintainer: Aaron Fisher <afishe27@alumni.jh.edu>
Diff between bootSVD versions 0.5 dated 2015-06-01 and 1.1 dated 2021-02-02
DESCRIPTION | 13 +++-- MD5 | 42 +++++++++--------- NAMESPACE | 16 +++++-- R/bootstrap_functions.R | 97 +++++++++++++++++++++++++++++++++---------- README.md | 8 +-- man/As2Vs.Rd | 9 +-- man/EEG_leadingV.Rd | 3 - man/EEG_mu.Rd | 3 - man/EEG_score_var.Rd | 3 - man/bootPCA.Rd | 9 +-- man/bootSVD.Rd | 19 ++++---- man/bootSVD_LD.Rd | 13 ++--- man/fastSVD.Rd | 20 ++++---- man/ffmatrixmult.Rd | 11 ++-- man/genBootIndeces.Rd | 3 - man/genQ.Rd | 3 - man/getMomentsAndMomentCI.Rd | 14 +++--- man/os.Rd | 3 - man/qrSVD.Rd | 3 - man/reindexMatricesByK.Rd | 15 +++--- man/reindexVectorsByK.Rd | 5 -- man/simEEG.Rd | 7 +-- 22 files changed, 186 insertions(+), 133 deletions(-)
Title: Flexible Bayes Factor Testing of Scientific Expectations
Description: Implementation of various default Bayes factors
for testing statistical hypotheses. The package is
intended for applied quantitative researchers in the
social and behavioral sciences, medical research,
and related fields. The Bayes factor tests can be
executed for statistical models such as
univariate and multivariate normal linear models,
generalized linear models, special cases of
linear mixed models, survival models, relational
event models. Parameters that can be tested are
location parameters (e.g., group means, regression coefficients),
variances (e.g., group variances), and measures of
association (e.g,. bivariate correlations), among others.
The statistical underpinnings are
described in
Mulder, Hoijtink, and Xin (2019) <arXiv:1904.00679>,
Mulder and Gelissen (2019) <arXiv:1807.05819>,
Mulder (2016) <DOI:10.1016/j.jmp.2014.09.004>,
Mulder and Fox (2019) <DOI:10.1214/18-BA1115>,
Mulder and Fox (2013) <DOI:10.1007/s11222-011-9295-3>,
Boeing-Messing, van Assen, Hofman, Hoijtink, and Mulder <DOI:10.1037/met0000116>,
Hoijtink, Mulder, van Lissa, and Gu, (2018) <DOI:10.31234/osf.io/v3shc>,
Gu, Mulder, and Hoijtink, (2018) <DOI:10.1111/bmsp.12110>,
Hoijtink, Gu, and Mulder, (2018) <DOI:10.1111/bmsp.12145>, and
Hoijtink, Gu, Mulder, and Rosseel, (2018) <DOI:10.1037/met0000187>.
Author: Joris Mulder [aut, cre],
Caspar van Lissa [aut, ctb],
Donald R. Williams [aut, ctb],
Xin Gu [aut],
Anton Olsson-Collentine [aut, ctb],
Florian Boeing-Messing [aut, ctb],
Jean-Paul Fox [aut, ctb],
Janosch Menke [ctb],
Robbie van Aert [ctb],
Barry Brown [ctb],
James Lovato [ctb],
Kathy Russell [ctb],
Lapack 3.8 [ctb],
Jack Dongarra [ctb],
Jim Bunch [ctb],
Cleve Moler [ctb],
Gilbert Stewart [ctb],
John Burkandt [ctb],
Ashwith Rego [ctb],
Alexander Godunov [ctb],
Alan Miller [ctb],
Jean-Pierre Moreau [ctb],
The R Core Team [cph]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between BFpack versions 0.3.1 dated 2020-11-30 and 0.3.2 dated 2021-02-02
BFpack-0.3.1/BFpack/R/same_building.R |only BFpack-0.3.1/BFpack/R/same_division.R |only BFpack-0.3.1/BFpack/R/same_hierarchy.R |only BFpack-0.3.1/BFpack/data/same_building.csv |only BFpack-0.3.1/BFpack/data/same_division.csv |only BFpack-0.3.1/BFpack/data/same_hierarchy.csv |only BFpack-0.3.1/BFpack/man/same_building.Rd |only BFpack-0.3.1/BFpack/man/same_division.Rd |only BFpack-0.3.1/BFpack/man/same_hierarchy.Rd |only BFpack-0.3.2/BFpack/DESCRIPTION | 12 - BFpack-0.3.2/BFpack/MD5 | 92 ++++---- BFpack-0.3.2/BFpack/NAMESPACE | 1 BFpack-0.3.2/BFpack/R/BF.coxph.R | 4 BFpack-0.3.2/BFpack/R/BF.default.R | 16 - BFpack-0.3.2/BFpack/R/BF.glm.R | 48 ++-- BFpack-0.3.2/BFpack/R/BF.lm.R | 91 +++++--- BFpack-0.3.2/BFpack/R/BF.polr.R | 52 ++--- BFpack-0.3.2/BFpack/R/BF.print.R | 6 BFpack-0.3.2/BFpack/R/BF.summary.R | 6 BFpack-0.3.2/BFpack/R/BF.survreg.R | 53 ++--- BFpack-0.3.2/BFpack/R/BF.zeroinfl.R | 50 ++-- BFpack-0.3.2/BFpack/R/BF_cortest.R | 16 - BFpack-0.3.2/BFpack/R/BF_methods.R | 101 ++++++++- BFpack-0.3.2/BFpack/R/BFhetcor.R | 12 - BFpack-0.3.2/BFpack/R/BFicc.R | 16 - BFpack-0.3.2/BFpack/R/BFmeta.R | 4 BFpack-0.3.2/BFpack/R/BFttest.R | 72 ++++-- BFpack-0.3.2/BFpack/R/BFvar.R | 14 - BFpack-0.3.2/BFpack/R/actors.R | 63 ++---- BFpack-0.3.2/BFpack/R/attention.R | 6 BFpack-0.3.2/BFpack/R/cor_test.print.R |only BFpack-0.3.2/BFpack/R/relevents.R | 62 ++---- BFpack-0.3.2/BFpack/R/same_culture.R |only BFpack-0.3.2/BFpack/R/same_location.R |only BFpack-0.3.2/BFpack/R/sivan.R | 6 BFpack-0.3.2/BFpack/R/tvprices.R | 6 BFpack-0.3.2/BFpack/R/wilson.r | 6 BFpack-0.3.2/BFpack/build/vignette.rds |binary BFpack-0.3.2/BFpack/data/actors.csv | 52 ++--- BFpack-0.3.2/BFpack/data/same_culture.csv |only BFpack-0.3.2/BFpack/data/same_location.csv |only BFpack-0.3.2/BFpack/inst/doc/vignette_BFpack.Rmd | 13 - BFpack-0.3.2/BFpack/inst/doc/vignette_BFpack.html | 15 - BFpack-0.3.2/BFpack/man/BF.Rd | 103 ++++++++-- BFpack-0.3.2/BFpack/man/actors.Rd | 34 --- BFpack-0.3.2/BFpack/man/attention.Rd | 8 BFpack-0.3.2/BFpack/man/relevents.Rd | 30 -- BFpack-0.3.2/BFpack/man/same_culture.Rd |only BFpack-0.3.2/BFpack/man/same_location.Rd |only BFpack-0.3.2/BFpack/man/sivan.Rd | 8 BFpack-0.3.2/BFpack/man/tvprices.Rd | 8 BFpack-0.3.2/BFpack/man/wilson.Rd | 8 BFpack-0.3.2/BFpack/tests/testthat/test_application1_BF.bain_ttest.R | 8 BFpack-0.3.2/BFpack/tests/testthat/test_application5_BF.glm_BF_Gaussian.R | 2 BFpack-0.3.2/BFpack/vignettes/vignette_BFpack.Rmd | 13 - 55 files changed, 608 insertions(+), 509 deletions(-)
Title: Functional Bases
Description: Easy-to-use, very fast implementation of various functional bases. Easily used together with other packages.
A functional basis is a collection of basis functions [\phi_1, ..., \phi_n] that can represent a smooth function, i.e. $f(t) = \sum c_k \phi_k(t)$.
First- and second-order derivatives are also included. These are the mathematically correct ones, no approximations applied.
As of version 1.0, this package includes B-splines, Fourier bases and polynomials.
Author: Niels Olsen
Maintainer: Niels Olsen <nalo@dtu.dk>
Diff between fctbases versions 1.0.0 dated 2020-11-23 and 1.1.0 dated 2021-02-02
DESCRIPTION | 11 ++- MD5 | 33 ++++++----- R/basis_functions.R | 5 + R/fctbases.R | 45 ++++++++++++--- README.md | 16 +++-- build |only inst |only man/Functional-basis-function.Rd | 69 +++++++++++++++-------- man/fctbases-package.Rd | 11 ++- man/make.bspline.basis.Rd | 4 - man/make.std.bspline.basis.Rd | 4 - src/Master.cpp | 17 ++++- src/RcppExports.cpp | 36 ++++++------ src/bspline.h | 117 +++++++++++++++++++++++++++------------ src/evaluation.h | 46 +++++++++++---- src/fourier_basis.h | 76 ++++++++++++++++++------- src/function_class.h | 30 +++++++++- vignettes |only 18 files changed, 363 insertions(+), 157 deletions(-)
Title: Integrated Taxonomic Information System Client
Description: An interface to the Integrated Taxonomic Information System ('ITIS')
(<https://www.itis.gov>). Includes functions to work with the 'ITIS' REST
API methods (<https://www.itis.gov/ws_description.html>), as well as the
'Solr' web service (<https://www.itis.gov/solr_documentation.html>).
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between ritis versions 0.9.0 dated 2020-04-17 and 1.0.0 dated 2021-02-02
ritis-0.9.0/ritis/README.md |only ritis-0.9.0/ritis/build |only ritis-0.9.0/ritis/inst |only ritis-0.9.0/ritis/vignettes |only ritis-1.0.0/ritis/DESCRIPTION | 12 - ritis-1.0.0/ritis/LICENSE | 4 ritis-1.0.0/ritis/MD5 | 105 ++++++++-- ritis-1.0.0/ritis/NEWS.md | 13 + ritis-1.0.0/ritis/R/publications.R | 3 ritis-1.0.0/ritis/R/terms.R | 69 ++---- ritis-1.0.0/ritis/R/zzz.R | 19 - ritis-1.0.0/ritis/man/itis_facet.Rd | 2 ritis-1.0.0/ritis/man/itis_group.Rd | 2 ritis-1.0.0/ritis/man/itis_highlight.Rd | 2 ritis-1.0.0/ritis/man/itis_search.Rd | 2 ritis-1.0.0/ritis/man/terms.Rd | 4 ritis-1.0.0/ritis/tests/fixtures/accepted_names-errors.yml |only ritis-1.0.0/ritis/tests/fixtures/accepted_names-json.yml |only ritis-1.0.0/ritis/tests/fixtures/accepted_names-xml.yml |only ritis-1.0.0/ritis/tests/fixtures/accepted_names.yml |only ritis-1.0.0/ritis/tests/fixtures/comment_detail-errors.yml |only ritis-1.0.0/ritis/tests/fixtures/comment_detail-json.yml |only 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ritis-1.0.0/ritis/tests/fixtures/credibility_rating-xml.yml |only ritis-1.0.0/ritis/tests/fixtures/credibility_rating.yml |only ritis-1.0.0/ritis/tests/fixtures/credibility_ratings.yml |only ritis-1.0.0/ritis/tests/fixtures/currency-errors.yml |only ritis-1.0.0/ritis/tests/fixtures/currency-json.yml |only ritis-1.0.0/ritis/tests/fixtures/currency-xml.yml |only ritis-1.0.0/ritis/tests/fixtures/currency.yml |only ritis-1.0.0/ritis/tests/fixtures/date_data-errors.yml |only ritis-1.0.0/ritis/tests/fixtures/date_data-json.yml |only ritis-1.0.0/ritis/tests/fixtures/date_data-xml.yml |only ritis-1.0.0/ritis/tests/fixtures/date_data.yml |only ritis-1.0.0/ritis/tests/fixtures/description-json.yml |only ritis-1.0.0/ritis/tests/fixtures/description-xml.yml |only ritis-1.0.0/ritis/tests/fixtures/description.yml |only ritis-1.0.0/ritis/tests/fixtures/experts-errors.yml |only ritis-1.0.0/ritis/tests/fixtures/experts-json.yml |only ritis-1.0.0/ritis/tests/fixtures/experts-xml.yml |only 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ritis-1.0.0/ritis/tests/fixtures/terms_both.yml |only ritis-1.0.0/ritis/tests/fixtures/terms_common.yml |only ritis-1.0.0/ritis/tests/fixtures/terms_scientific.yml |only ritis-1.0.0/ritis/tests/fixtures/usage-errors.yml |only ritis-1.0.0/ritis/tests/fixtures/usage-json.yml |only ritis-1.0.0/ritis/tests/fixtures/usage-xml.yml |only ritis-1.0.0/ritis/tests/fixtures/usage.yml |only ritis-1.0.0/ritis/tests/testthat/test-accepted_names.R |only ritis-1.0.0/ritis/tests/testthat/test-comment_detail.R |only ritis-1.0.0/ritis/tests/testthat/test-common_names.R |only ritis-1.0.0/ritis/tests/testthat/test-core_metadata.R |only ritis-1.0.0/ritis/tests/testthat/test-coverage.R |only ritis-1.0.0/ritis/tests/testthat/test-credibility_rating.R |only ritis-1.0.0/ritis/tests/testthat/test-currency.R |only ritis-1.0.0/ritis/tests/testthat/test-date_data.R |only ritis-1.0.0/ritis/tests/testthat/test-description.R |only ritis-1.0.0/ritis/tests/testthat/test-experts.R |only ritis-1.0.0/ritis/tests/testthat/test-full_record.R |only ritis-1.0.0/ritis/tests/testthat/test-geographic_divisions.R |only ritis-1.0.0/ritis/tests/testthat/test-geographic_values.R |only ritis-1.0.0/ritis/tests/testthat/test-global_species_completeness.R |only ritis-1.0.0/ritis/tests/testthat/test-terms.R |only ritis-1.0.0/ritis/tests/testthat/test-usage.R |only 93 files changed, 142 insertions(+), 95 deletions(-)
Title: Bias Correction under Censoring Plan
Description: Developed for the following tasks. Simulating, computing maximum likelihood
estimator, computing the Fisher information matrix, computing goodness-of-fit measures,
and correcting bias of the ML estimator for a wide range of distributions fitted to units
placed on progressive type-I interval censoring and progressive type-II censoring plans.
The methods of Cox and Snell (1968) <doi:10.1111/j.2517-6161.1968.tb00724.x> and
bootstrap method for computing the bias-corrected maximum likelihood estimator.
Author: Mahdi Teimouri
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between bccp versions 0.1.0 dated 2020-10-26 and 0.3.0 dated 2021-02-02
bccp-0.1.0/bccp/man/bctypei.Rd |only bccp-0.1.0/bccp/man/fiypei.Rd |only bccp-0.1.0/bccp/man/goftypei.Rd |only bccp-0.1.0/bccp/man/rtypei.Rd |only bccp-0.3.0/bccp/DESCRIPTION | 19 bccp-0.3.0/bccp/MD5 | 29 - bccp-0.3.0/bccp/NAMESPACE | 4 bccp-0.3.0/bccp/R/bccp.R | 796 +++++++++++++++++++++++++++---------- bccp-0.3.0/bccp/data |only bccp-0.3.0/bccp/man/bootbctype1.Rd |only bccp-0.3.0/bccp/man/bootbctype2.Rd |only bccp-0.3.0/bccp/man/coxbctype1.Rd |only bccp-0.3.0/bccp/man/coxbctype2.Rd |only bccp-0.3.0/bccp/man/fitype1.Rd |only bccp-0.3.0/bccp/man/fitype2.Rd |only bccp-0.3.0/bccp/man/goftype1.Rd |only bccp-0.3.0/bccp/man/goftype2.Rd |only bccp-0.3.0/bccp/man/mletype1.Rd |only bccp-0.3.0/bccp/man/mletype2.Rd |only bccp-0.3.0/bccp/man/plasma.Rd |only bccp-0.3.0/bccp/man/relief.Rd |only bccp-0.3.0/bccp/man/rtype1.Rd |only bccp-0.3.0/bccp/man/rtype2.Rd |only bccp-0.3.0/bccp/man/simpson.Rd |only bccp-0.3.0/bccp/man/welcome.Rd | 2 25 files changed, 617 insertions(+), 233 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-26 2.0.2
Title: Quantile Regression Coefficients Modeling
Description: Parametric modeling of quantile regression coefficient functions.
Author: Paolo Frumento <paolo.frumento@unipi.it>
Maintainer: Paolo Frumento <paolo.frumento@unipi.it>
Diff between qrcm versions 2.2 dated 2020-02-28 and 3.0 dated 2021-02-02
qrcm-2.2/qrcm/R/qrcm.R |only qrcm-3.0/qrcm/DESCRIPTION | 13 +--- qrcm-3.0/qrcm/MD5 | 34 ++++++++--- qrcm-3.0/qrcm/NAMESPACE | 18 +++++ qrcm-3.0/qrcm/NEWS.md | 22 ++++--- qrcm-3.0/qrcm/R/A0_auxfun.R |only qrcm-3.0/qrcm/R/A1_buildfun.R |only qrcm-3.0/qrcm/R/iqr1_fit.R |only qrcm-3.0/qrcm/R/iqr2_auxfun.R |only qrcm-3.0/qrcm/R/iqr3_test_fit.R |only qrcm-3.0/qrcm/R/iqrL1_fit.R |only qrcm-3.0/qrcm/R/iqrL2_auxfun.R |only qrcm-3.0/qrcm/R/iqrL3_test_fit.R |only qrcm-3.0/qrcm/R/qc.R |only qrcm-3.0/qrcm/man/diagnose.qc.Rd |only qrcm-3.0/qrcm/man/iqr.Rd | 112 +++++++++++++++++++++++-------------- qrcm-3.0/qrcm/man/iqrL.Rd |only qrcm-3.0/qrcm/man/plot.iqrL.Rd |only qrcm-3.0/qrcm/man/predict.iqrL.Rd |only qrcm-3.0/qrcm/man/qc.control.Rd |only qrcm-3.0/qrcm/man/qrcm-internal.Rd | 62 ++++++++++++++++---- qrcm-3.0/qrcm/man/qrcm-package.Rd | 49 +++++++--------- qrcm-3.0/qrcm/man/summary.iqr.Rd | 6 - qrcm-3.0/qrcm/man/summary.iqrL.Rd |only qrcm-3.0/qrcm/man/test.fit.Rd | 70 +++-------------------- qrcm-3.0/qrcm/man/test.fit.iqr.Rd |only qrcm-3.0/qrcm/man/test.fit.iqrL.Rd |only 27 files changed, 224 insertions(+), 162 deletions(-)
Title: Management Strategy Evaluation Toolkit
Description: Development, simulation testing, and implementation of management procedures for fisheries
(see Carruthers & Hordyk (2018) <doi:10.1111/2041-210X.13081>).
Author: Adrian Hordyk [aut, cre],
Quang Huynh [aut],
Tom Carruthers [aut],
Chris Grandin [ctb] (iSCAM functions)
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between MSEtool versions 3.0.0 dated 2021-01-08 and 3.0.1 dated 2021-02-02
MSEtool-3.0.0/MSEtool/R/Data_documentation.r |only MSEtool-3.0.0/MSEtool/R/ProjectMOM.R |only MSEtool-3.0.1/MSEtool/DESCRIPTION | 6 MSEtool-3.0.1/MSEtool/MD5 | 253 MSEtool-3.0.1/MSEtool/NEWS.md | 15 MSEtool-3.0.1/MSEtool/R/Class_definitions.R | 10 MSEtool-3.0.1/MSEtool/R/DFO.R | 4 MSEtool-3.0.1/MSEtool/R/Data_Functions.R | 164 MSEtool-3.0.1/MSEtool/R/Data_Plotting.R | 35 MSEtool-3.0.1/MSEtool/R/Data_documentation.R |only MSEtool-3.0.1/MSEtool/R/Data_make_update.R | 91 MSEtool-3.0.1/MSEtool/R/Misc_Internal.R | 1 MSEtool-3.0.1/MSEtool/R/OM_Plotting.R | 2 MSEtool-3.0.1/MSEtool/R/SS2MOM.R | 3 MSEtool-3.0.1/MSEtool/R/SS2OM.R | 21 MSEtool-3.0.1/MSEtool/R/SSinternal.R | 49 MSEtool-3.0.1/MSEtool/R/SampleOM.R | 39 MSEtool-3.0.1/MSEtool/R/multiMSE.R | 7 MSEtool-3.0.1/MSEtool/R/multi_q_estimation.R | 3 MSEtool-3.0.1/MSEtool/R/runMSE.R | 5 MSEtool-3.0.1/MSEtool/R/sysdata.rda |binary MSEtool-3.0.1/MSEtool/README.md | 57 MSEtool-3.0.1/MSEtool/data/Atlantic_mackerel.rda |binary MSEtool-3.0.1/MSEtool/data/China_rockfish.rda |binary MSEtool-3.0.1/MSEtool/data/Cobia.rda |binary MSEtool-3.0.1/MSEtool/data/Example_datafile.rda |binary MSEtool-3.0.1/MSEtool/data/Gulf_blue_tilefish.rda |binary MSEtool-3.0.1/MSEtool/data/ObsDescription.rda |binary MSEtool-3.0.1/MSEtool/data/Red_snapper.rda |binary MSEtool-3.0.1/MSEtool/data/ReqData.rda |binary MSEtool-3.0.1/MSEtool/data/SimulatedData.rda |binary MSEtool-3.0.1/MSEtool/data/Simulation_1.rda |binary MSEtool-3.0.1/MSEtool/data/ourReefFish.rda |binary MSEtool-3.0.1/MSEtool/inst/Rmd/Hist/Hist.Rmd | 55 MSEtool-3.0.1/MSEtool/inst/Rmd/Obs/Obs.Rmd | 79 MSEtool-3.0.1/MSEtool/man/BlankSelPlot.Rd | 50 MSEtool-3.0.1/MSEtool/man/CALsimp.Rd | 42 MSEtool-3.0.1/MSEtool/man/CSRA.Rd | 104 MSEtool-3.0.1/MSEtool/man/CSRAfunc.Rd | 164 MSEtool-3.0.1/MSEtool/man/CalcMPDynamics.Rd | 314 MSEtool-3.0.1/MSEtool/man/CheckDuplicate.Rd | 34 MSEtool-3.0.1/MSEtool/man/Choose.Rd | 136 MSEtool-3.0.1/MSEtool/man/Converge.Rd | 148 MSEtool-3.0.1/MSEtool/man/Cos_thresh_tab.Rd | 34 MSEtool-3.0.1/MSEtool/man/Cplot.Rd | 88 MSEtool-3.0.1/MSEtool/man/DFO_bar.Rd | 38 MSEtool-3.0.1/MSEtool/man/DFO_hist.Rd | 48 MSEtool-3.0.1/MSEtool/man/DFO_plot.Rd | 42 MSEtool-3.0.1/MSEtool/man/DFO_plot2.Rd | 60 MSEtool-3.0.1/MSEtool/man/DFO_proj.Rd | 42 MSEtool-3.0.1/MSEtool/man/DFO_quant.Rd | 80 MSEtool-3.0.1/MSEtool/man/DFO_report.Rd | 62 MSEtool-3.0.1/MSEtool/man/DFO_spider.Rd | 34 MSEtool-3.0.1/MSEtool/man/DFO_tab.Rd | 64 MSEtool-3.0.1/MSEtool/man/DFO_tab_formatted.Rd | 72 MSEtool-3.0.1/MSEtool/man/Data-class-objects.Rd | 110 MSEtool-3.0.1/MSEtool/man/Data2csv.Rd | 50 MSEtool-3.0.1/MSEtool/man/DataDescription.Rd | 32 MSEtool-3.0.1/MSEtool/man/DataSlots.Rd | 32 MSEtool-3.0.1/MSEtool/man/Data_xl.Rd | 80 MSEtool-3.0.1/MSEtool/man/Dom.Rd | 102 MSEtool-3.0.1/MSEtool/man/Fease.Rd | 106 MSEtool-3.0.1/MSEtool/man/Fleet-class-objects.Rd | 2 MSEtool-3.0.1/MSEtool/man/FleetDescription.Rd | 32 MSEtool-3.0.1/MSEtool/man/GenerateRandomWalk.Rd | 42 MSEtool-3.0.1/MSEtool/man/Imp-class-objects.Rd | 2 MSEtool-3.0.1/MSEtool/man/ImpDescription.Rd | 32 MSEtool-3.0.1/MSEtool/man/L2A.Rd | 64 MSEtool-3.0.1/MSEtool/man/LH2OM.Rd | 248 MSEtool-3.0.1/MSEtool/man/LHdatabase.Rd | 46 MSEtool-3.0.1/MSEtool/man/LinInterp.Rd | 52 MSEtool-3.0.1/MSEtool/man/ML2D.Rd | 62 MSEtool-3.0.1/MSEtool/man/MOM-class-objects.Rd | 40 MSEtool-3.0.1/MSEtool/man/MOM-class.Rd | 158 MSEtool-3.0.1/MSEtool/man/MPCalcsNAs.Rd | 34 MSEtool-3.0.1/MSEtool/man/MPtype.Rd | 50 MSEtool-3.0.1/MSEtool/man/MSEDescription.Rd | 32 MSEtool-3.0.1/MSEtool/man/MSEextra.Rd | 32 MSEtool-3.0.1/MSEtool/man/NIL.Rd | 42 MSEtool-3.0.1/MSEtool/man/OM-class-objects.Rd | 40 MSEtool-3.0.1/MSEtool/man/OMDescription.Rd | 32 MSEtool-3.0.1/MSEtool/man/OMdoc.Rd | 126 MSEtool-3.0.1/MSEtool/man/OMexample.Rd | 38 MSEtool-3.0.1/MSEtool/man/OMinit.Rd | 112 MSEtool-3.0.1/MSEtool/man/Obs-class-objects.Rd | 2 MSEtool-3.0.1/MSEtool/man/ObsDescription.Rd | 32 MSEtool-3.0.1/MSEtool/man/RealFease.Rd | 42 MSEtool-3.0.1/MSEtool/man/Report.Rd | 118 MSEtool-3.0.1/MSEtool/man/ReqData.Rd | 32 MSEtool-3.0.1/MSEtool/man/SIL.Rd | 38 MSEtool-3.0.1/MSEtool/man/SSBrefplot.Rd | 50 MSEtool-3.0.1/MSEtool/man/SimulatedData.Rd | 32 MSEtool-3.0.1/MSEtool/man/SketchFun.Rd | 40 MSEtool-3.0.1/MSEtool/man/Stock-class-objects.Rd | 2 MSEtool-3.0.1/MSEtool/man/StockDescription.Rd | 32 MSEtool-3.0.1/MSEtool/man/Sub.Rd | 76 MSEtool-3.0.1/MSEtool/man/TEG.Rd | 34 MSEtool-3.0.1/MSEtool/man/Thresh_tab.Rd | 56 MSEtool-3.0.1/MSEtool/man/TradePlot.Rd | 244 MSEtool-3.0.1/MSEtool/man/Uses.Rd | 50 MSEtool-3.0.1/MSEtool/man/XL2Fleet.Rd | 58 MSEtool-3.0.1/MSEtool/man/XL2OM.Rd | 112 MSEtool-3.0.1/MSEtool/man/XL2Stock.Rd | 58 MSEtool-3.0.1/MSEtool/man/applyMMP.Rd | 50 MSEtool-3.0.1/MSEtool/man/applyMP.Rd | 52 MSEtool-3.0.1/MSEtool/man/boxplot.Data.Rd | 64 MSEtool-3.0.1/MSEtool/man/cparscheck.Rd | 44 MSEtool-3.0.1/MSEtool/man/expandHerm.Rd | 46 MSEtool-3.0.1/MSEtool/man/figures |only MSEtool-3.0.1/MSEtool/man/getAFC.Rd | 54 MSEtool-3.0.1/MSEtool/man/getDataList.Rd | 38 MSEtool-3.0.1/MSEtool/man/getclass.Rd | 44 MSEtool-3.0.1/MSEtool/man/hist2.Rd | 48 MSEtool-3.0.1/MSEtool/man/hrate.Rd | 36 MSEtool-3.0.1/MSEtool/man/iSCAM2OM.Rd | 108 MSEtool-3.0.1/MSEtool/man/joinData.Rd | 34 MSEtool-3.0.1/MSEtool/man/ldim.Rd | 34 MSEtool-3.0.1/MSEtool/man/movestockCPP.Rd | 46 MSEtool-3.0.1/MSEtool/man/multiData.Rd | 50 MSEtool-3.0.1/MSEtool/man/multidebug.Rd | 54 MSEtool-3.0.1/MSEtool/man/plotOFL.Rd | 48 MSEtool-3.0.1/MSEtool/man/plotmulti.Rd | 38 MSEtool-3.0.1/MSEtool/man/runCOSEWIC.Rd | 280 MSEtool-3.0.1/MSEtool/man/writeCSV.Rd | 52 MSEtool-3.0.1/MSEtool/src/popddynCPP.cpp | 2 MSEtool-3.0.1/MSEtool/tests/manual/Test_Report.html | 233 MSEtool-3.0.1/MSEtool/tests/manual/run-manual-tests.R | 2 MSEtool-3.0.1/MSEtool/tests/manual/test-code/2021-01-07MSEtool_V3.0.0.xml | 3930 +++++----- MSEtool-3.0.1/MSEtool/tests/manual/test-code/2021-02-01MSEtool_V3.0.9005.xml |only MSEtool-3.0.1/MSEtool/tests/manual/test-code/test-Data-Conditioning.R |only MSEtool-3.0.1/MSEtool/tests/manual/test-code/test-ReferencePoints.R |only 131 files changed, 5672 insertions(+), 5208 deletions(-)
Title: Dynamical Systems Approach to Infectious Disease Epidemiology
(Ecology/Evolution)
Description: Exploration of simulation models (apps) of various infectious disease transmission dynamics scenarios.
The purpose of the package is to help individuals learn
about infectious disease epidemiology (ecology/evolution) from a dynamical systems perspective.
All apps include explanations of the underlying models and instructions on what to do with the models.
Author: Andreas Handel [aut, cre] (<https://orcid.org/0000-0002-4622-1146>),
Cody Dailey [ctb],
Isaac Chun-Hai Fung [ctb],
Spencer Hall [ctb],
Ben Listyg [ctb],
Brian McKay [ctb],
John Rossow [ctb],
Sina Solaimanpour [ctb],
Alexis Vittengl [ctb],
Henok Woldu [ctb]
Maintainer: Andreas Handel <ahandel@uga.edu>
Diff between DSAIDE versions 0.8.3 dated 2020-01-08 and 0.9.0 dated 2021-02-02
DSAIDE-0.8.3/DSAIDE/R/simulate_environmentaltransmission_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_evolution_stochastic.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_fit_flu.r |only DSAIDE-0.8.3/DSAIDE/R/simulate_fit_noro.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_heterogeneity_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_idcharacteristics_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_idcontrol_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_idsurveillance_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_maternalimmunity_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_modelexploration_sir.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_parasites_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_reproductivenumber1_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_reproductivenumber2_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_seir_stochastic.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_sir_discrete.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_sir_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_sirdemographic_ode.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_sirdemographic_stochastic.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_usanalysis_sir.R |only DSAIDE-0.8.3/DSAIDE/R/simulate_vectortransmission_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/basicsir_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/directtransmission_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/environmentaltransmission_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/evolutionarydynamics_documentation.Rmd |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/evolutionarydynamics_documentation.html |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/evolutionarydynamics_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/fitflu_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/fitnoro_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/hostheterogeneity_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/idcharacteristics_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/idcontrolcomplex_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/idcontrolmultioutbreak_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/idcontrolvaccine_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/idpatterns_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/idsurveillance_documentation.Rmd |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/idsurveillance_documentation.html |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/idsurveillance_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/maternalimmunity_documentation.Rmd |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/maternalimmunity_documentation.html |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/maternalimmunity_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/modelexploration_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/multipathogen_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/parasitemodel_documentation.Rmd |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/parasitemodel_documentation.html |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/parasitemodel_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/references.bib |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/reproductivenumber1_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/reproductivenumber2_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/stochasticseir_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/stochasticsir_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/usanalysis_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/appinformation/vectortransmission_settings.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_environmentaltransmission_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_evolution_stochastic.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_fit_flu.r |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_fit_noro.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_heterogeneity_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_idcharacteristics_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_idcontrol_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_idsurveillance_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_maternalimmunity_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_modelexploration_sir.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_parasites_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_reproductivenumber1_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_reproductivenumber2_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_seir_stochastic.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_sir_discrete.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_sir_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_sirdemographic_ode.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_sirdemographic_stochastic.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_usanalysis_sir.R |only DSAIDE-0.8.3/DSAIDE/inst/simulatorfunctions/simulate_vectortransmission_ode.R |only DSAIDE-0.8.3/DSAIDE/man/simulate_environmentaltransmission_ode.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_evolution_stochastic.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_fit_flu.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_fit_noro.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_heterogeneity_ode.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_idcharacteristics_ode.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_idcontrol_ode.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_idsurveillance_ode.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_maternalimmunity_ode.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_modelexploration_sir.Rd |only DSAIDE-0.8.3/DSAIDE/man/simulate_parasites_ode.Rd |only 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DSAIDE-0.9.0/DSAIDE/R/run_model.R | 132 ++ DSAIDE-0.9.0/DSAIDE/R/simulate_Characteristics_of_ID_ode.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_Complex_ID_Control_ode.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_Drug_Resistance_Evolution_stochastic.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_Environmental_Transmission_model_ode.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_Host_Heterogeneity_Model_ode.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_SEIRSd_model_stochastic.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_SIRSd_model_ode.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_SIRSd_model_stochastic.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_SIR_model_discrete.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_SIR_model_ode.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_SIR_modelexploration.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_SIR_usanalysis.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_Vector_transmission_model_ode.R |only DSAIDE-0.9.0/DSAIDE/R/simulate_directtransmission_ode.R | 36 DSAIDE-0.9.0/DSAIDE/R/simulate_flu_fit.R |only 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9128 insertions(+), 4410 deletions(-)
Title: Base de Datos de Facil Acceso del Censo 2017 de Chile (2017
Chilean Census Easy Access Database)
Description: Provee un acceso conveniente a mas de 17 millones de registros
de la base de datos del Censo 2017. Los datos fueron importados desde
el DVD oficial del INE usando el Convertidor REDATAM creado por Pablo De
Grande y ademas se proporcionan los mapas que acompanian a estos
datos. Esta paquete esta documentado intencionalmente en castellano
asciificado para que funcione sin problema en diferentes plataformas.
(Provides convenient access to more than 17 million records from the
Chilean Census 2017 database. The datasets were imported from the official
DVD provided by the Chilean National Bureau of Statistics by using the
REDATAM converter created by Pablo De Grande and in addition it includes the
maps accompanying these datasets.)
Author: Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>),
Juan Correa [ctb],
Instituto Nacional de Estadisticas (INE) [dtc]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between censo2017 versions 0.3 dated 2021-01-24 and 0.3.2 dated 2021-02-02
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ R/connect.R | 21 +++++++++++++-------- R/download.R | 25 +------------------------ R/remove.R |only R/zzz.R | 26 +++++++++++++------------- man/censo_bbdd.Rd | 4 ++-- man/censo_borrar_base.Rd | 2 +- 8 files changed, 41 insertions(+), 58 deletions(-)