Title: Operationalizing Social Determinants of Health Data for
Researchers
Description: Accesses raw data via API and calculates social
determinants of health measures for user-specified locations in the
US, returning them in tidyverse- and sf-compatible data frames.
Author: Nik Krieger [aut, cre],
Jarrod Dalton [aut],
Cindy Wang [aut],
Adam Perzynski [aut],
National Institutes of Health/National Institute on Aging [fnd] (The
development of this software package was supported by a research
grant from the National Institutes of Health/National Institute on
Aging, (Principal Investigators: Jarrod E. Dalton, PhD and Adam T.
Perzynski, PhD; Grant Number: 5R01AG055480-02). All of its contents
are solely the responsibility of the authors and do not necessarily
represent the official views of the NIH.)
Maintainer: Nik Krieger <nk@case.edu>
Diff between sociome versions 1.4.2 dated 2020-08-03 and 2.0.0 dated 2021-02-24
DESCRIPTION | 16 - MD5 | 30 - NEWS.md | 16 + R/calculate_adi.R | 300 ++++++++++++------- R/data_documentation.R | 40 +- R/get_adi.R | 347 +++++++++++----------- R/get_geoids.R | 23 + R/sysdata.rda |binary R/validation.R | 126 ++++++- inst/extdata/census_variables_dataset_creator.Rmd | 51 +-- man/acs_vars.Rd | 38 +- man/calculate_adi.Rd | 42 +- man/decennial_vars.Rd | 2 man/get_adi.Rd | 99 +++--- man/get_geoids.Rd | 6 tests/testthat/test_tidycensus_related.R | 166 ++-------- 16 files changed, 725 insertions(+), 577 deletions(-)
Title: Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Description: Designed to be compatible with the R package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this 'Python' 'Boto3' Software Development Kit ('SDK')
<https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between RAthena versions 2.0.0 dated 2021-02-22 and 2.0.1 dated 2021-02-24
DESCRIPTION | 6 +-- MD5 | 16 +++++----- NAMESPACE | 1 NEWS.md | 4 ++ R/Connection.R | 48 +++++++++++++------------------ R/Result.R | 35 ++++++++++++++++++++++ R/util.R | 26 +++++++++------- man/dbGetStatement.Rd |only tests/testthat/test-keyboard-interrupt.R |only tests/testthat/test-metadata.R | 2 + 10 files changed, 90 insertions(+), 48 deletions(-)
Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws'
<https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between noctua versions 2.0.0 dated 2021-02-22 and 2.0.1 dated 2021-02-24
DESCRIPTION | 6 ++-- MD5 | 16 ++++++----- NAMESPACE | 1 NEWS.md | 4 ++ R/Connection.R | 45 +++++++++++++------------------ R/Result.R | 36 ++++++++++++++++++++++++ R/utils.R | 25 ++++++++++------- man/dbGetStatement.Rd |only tests/testthat/test-keyboard-interrupt.R |only tests/testthat/test-metadata.R | 2 + 10 files changed, 90 insertions(+), 45 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] (Bundled PCRE2 code),
Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code),
University of Cambridge [cph] (Bundled PCRE2 code),
Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with
PCRE2),
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled xxHash
code)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.14.2 dated 2020-09-05 and 0.15.0 dated 2021-02-24
ChangeLog | 4 DESCRIPTION | 12 MD5 | 33 R/RcppExports.R | 4 README.md | 8 build/vignette.rds |binary configure | 10 configure.ac | 10 inst/doc/vignette.R | 2 inst/doc/vignette.html | 148 - inst/doc/vignette.rmd | 2 inst/include/sf_internal.h | 51 src/RcppExports.cpp | 9 src/sf_altrep.h | 10 src/sf_disabled.h |only src/sf_functions.cpp | 192 - src/xxhash/xxhash.h | 6083 ++++++++++++++++++++++++++++++++------------- vignettes/vignette.rmd | 2 18 files changed, 4684 insertions(+), 1896 deletions(-)
Title: Implementation of BDAT Tree Taper Fortran Functions
Description: Implementing the BDAT tree taper Fortran routines, which were
developed for the German National Forest Inventory (NFI), to calculate
diameters, volume, assortments, double bark thickness and biomass for
different tree species based on tree characteristics and sorting information.
See Kublin (2003) <doi:10.1046/j.1439-0337.2003.00183.x> for details.
Author: Christian Vonderach [aut, cre],
Edgar Kublin [aut],
Bernhard Bösch [aut],
Gerald Kändler [aut],
Dominik Cullmann [ctb]
Maintainer: Christian Vonderach <christian.vonderach@forst.bwl.de>
Diff between rBDAT versions 0.9.6 dated 2021-02-18 and 0.9.7 dated 2021-02-24
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 19 ++++++++++++++++++- inst/NEWS.rd | 25 ++++++++++++++++++++++++- inst/doc/rbdat.html | 2 +- src/Koeff.f | 12 ++++++++---- src/rBDAT_init.c | 48 ++++++++++++++++++++++++------------------------ 7 files changed, 84 insertions(+), 40 deletions(-)
Title: R Interface to PXWEB APIs
Description: Generic interface for the PX-Web/PC-Axis API. The PX-Web/PC-Axis
API is used by organizations such as Statistics Sweden and Statistics
Finland to disseminate data. The R package can interact with all
PX-Web/PC-Axis APIs to fetch information about the data hierarchy, extract
metadata and extract and parse statistics to R data.frame format. PX-Web is
a solution to disseminate PC-Axis data files in dynamic tables on the web.
Since 2013 PX-Web contains an API to disseminate PC-Axis files.
Author: Mans Magnusson [aut, cre],
Markus Kainu [aut],
Janne Huovari [aut],
Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>),
Jan Bruusgaard [ctb],
Øyvind Langsrud [ctb],
Love Hansson [ctb],
Eydun Nielsen [ctb],
Bo Werth [ctb],
Thomas Runarsson [ctb],
Torbjörn Lindquist [ctb],
Palmar Thorsteinsson [ctb],
Pyry Kantanen [ctb]
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between pxweb versions 0.9.1 dated 2019-01-07 and 0.10.4 dated 2021-02-24
pxweb-0.10.4/pxweb/DESCRIPTION | 20 pxweb-0.10.4/pxweb/LICENSE | 2 pxweb-0.10.4/pxweb/MD5 | 181 +-- pxweb-0.10.4/pxweb/NAMESPACE | 10 pxweb-0.10.4/pxweb/NEWS.md | 9 pxweb-0.10.4/pxweb/R/defunct_functions.R |only pxweb-0.10.4/pxweb/R/onAttach.R | 2 pxweb-0.10.4/pxweb/R/pxweb-package.R | 4 pxweb-0.10.4/pxweb/R/pxweb.R | 5 pxweb-0.10.4/pxweb/R/pxweb_add_config.R | 2 pxweb-0.10.4/pxweb/R/pxweb_as_data_frame.R | 16 pxweb-0.10.4/pxweb/R/pxweb_cite.R | 2 pxweb-0.10.4/pxweb/R/pxweb_data_comments.R | 3 pxweb-0.10.4/pxweb/R/pxweb_get.R | 20 pxweb-0.10.4/pxweb/R/pxweb_interactive.R | 49 pxweb-0.10.4/pxweb/R/pxweb_levels.R | 20 pxweb-0.10.4/pxweb/R/pxweb_metadata.R | 14 pxweb-0.10.4/pxweb/R/pxweb_query.R | 11 pxweb-0.10.4/pxweb/R/pxweb_split_query.R | 34 pxweb-0.10.4/pxweb/R/pxweb_test_api_endpoint.R | 2 pxweb-0.10.4/pxweb/R/utils_tests.R |only pxweb-0.10.4/pxweb/build/vignette.rds |binary pxweb-0.10.4/pxweb/inst/CITATION | 4 pxweb-0.10.4/pxweb/inst/doc/pxweb.R | 56 - pxweb-0.10.4/pxweb/inst/doc/pxweb.Rmd | 23 pxweb-0.10.4/pxweb/inst/doc/pxweb.html | 545 +++++++--- pxweb-0.10.4/pxweb/inst/extdata/api.json | 132 +- pxweb-0.10.4/pxweb/inst/extras/build.cran.sh | 10 pxweb-0.10.4/pxweb/inst/extras/cheatsheet_pxweb.pptx |only pxweb-0.10.4/pxweb/man/api_catalogue.Rd | 127 ++ pxweb-0.10.4/pxweb/man/assert_query_can_be_split_to_batches.Rd |only pxweb-0.10.4/pxweb/man/http_was_redirected.Rd | 2 pxweb-0.10.4/pxweb/man/pxweb-package.Rd | 4 pxweb-0.10.4/pxweb/man/pxweb.Rd | 5 pxweb-0.10.4/pxweb/man/pxweb_advanced_get.Rd | 10 pxweb-0.10.4/pxweb/man/pxweb_api_catalogue_entry.Rd | 2 pxweb-0.10.4/pxweb/man/pxweb_api_name.Rd | 23 pxweb-0.10.4/pxweb/man/pxweb_as_data_frame.Rd | 108 + pxweb-0.10.4/pxweb/man/pxweb_data_comments.Rd | 3 pxweb-0.10.4/pxweb/man/pxweb_explorer.Rd | 17 pxweb-0.10.4/pxweb/man/pxweb_get.Rd | 3 pxweb-0.10.4/pxweb/man/pxweb_get_data.Rd | 11 pxweb-0.10.4/pxweb/man/pxweb_interactive.Rd | 28 pxweb-0.10.4/pxweb/man/pxweb_metadata_time.Rd |only pxweb-0.10.4/pxweb/man/pxweb_query_dim_splittable.Rd | 5 pxweb-0.10.4/pxweb/man/pxweb_test_api.Rd | 11 pxweb-0.10.4/pxweb/man/pxweb_validate_query_with_metadata.Rd | 2 pxweb-0.10.4/pxweb/tests/testthat/log_pxweb_api_http_calls.txt |only pxweb-0.10.4/pxweb/tests/testthat/test-README.R |only pxweb-0.10.4/pxweb/tests/testthat/test-defunct.R |only pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_api_paths.R |only pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_constructor.R | 2 pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_get.R | 111 +- pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_query.R | 27 pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_test_api.R | 8 pxweb-0.10.4/pxweb/tests/testthat/test_data |only pxweb-0.10.4/pxweb/vignettes/pxweb.Rmd | 23 pxweb-0.9.1/pxweb/R/deprecated_ApiData.R |only pxweb-0.9.1/pxweb/R/deprecated_api_catalogue.R |only pxweb-0.9.1/pxweb/R/deprecated_api_parameters.R |only pxweb-0.9.1/pxweb/R/deprecated_api_timer.R |only pxweb-0.9.1/pxweb/R/deprecated_base_url.R |only pxweb-0.9.1/pxweb/R/deprecated_constants.R |only pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_data.R |only pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_data_internal.R |only pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_dims.R |only pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_levels.R |only pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_metadata.R |only pxweb-0.9.1/pxweb/R/deprecated_interactive_pxweb.R |only pxweb-0.9.1/pxweb/R/deprecated_interactive_pxweb_internal.R |only pxweb-0.9.1/pxweb/R/deprecated_pxweb_api_class.R |only pxweb-0.9.1/pxweb/R/deprecated_test_pxweb_api.R |only pxweb-0.9.1/pxweb/R/deprecated_test_pxweb_api_internal.R |only pxweb-0.9.1/pxweb/R/deprecated_todo.R |only pxweb-0.9.1/pxweb/R/deprecated_utils_internal.R |only pxweb-0.9.1/pxweb/man/ApiData.Rd |only pxweb-0.9.1/pxweb/man/MakeUrl.Rd |only pxweb-0.9.1/pxweb/man/Number.Rd |only pxweb-0.9.1/pxweb/man/api_parameters.Rd |only pxweb-0.9.1/pxweb/man/api_timer.Rd |only pxweb-0.9.1/pxweb/man/base_url.Rd |only pxweb-0.9.1/pxweb/man/buildPath.Rd |only pxweb-0.9.1/pxweb/man/calc_dim_type.Rd |only pxweb-0.9.1/pxweb/man/calculate_data_dim.Rd |only pxweb-0.9.1/pxweb/man/checkForLevels.Rd |only pxweb-0.9.1/pxweb/man/check_new_pxweb_apis.Rd |only pxweb-0.9.1/pxweb/man/choose_pxweb_api.Rd |only pxweb-0.9.1/pxweb/man/choose_pxweb_database_url.Rd |only pxweb-0.9.1/pxweb/man/clean_pxweb.Rd |only pxweb-0.9.1/pxweb/man/create_batch_list.Rd |only pxweb-0.9.1/pxweb/man/deparseLevels.Rd |only pxweb-0.9.1/pxweb/man/download_pxweb.Rd |only pxweb-0.9.1/pxweb/man/findData.input.Rd |only pxweb-0.9.1/pxweb/man/getContent.Rd |only pxweb-0.9.1/pxweb/man/get_api_file_path.Rd |only pxweb-0.9.1/pxweb/man/get_api_index.Rd |only pxweb-0.9.1/pxweb/man/get_api_list.Rd |only pxweb-0.9.1/pxweb/man/get_api_list_remote.Rd |only pxweb-0.9.1/pxweb/man/get_dim_size.Rd |only pxweb-0.9.1/pxweb/man/get_github_api_urls.Rd |only pxweb-0.9.1/pxweb/man/get_pxweb_data.Rd |only pxweb-0.9.1/pxweb/man/get_pxweb_dims.Rd |only pxweb-0.9.1/pxweb/man/get_pxweb_levels.Rd |only pxweb-0.9.1/pxweb/man/get_pxweb_metadata.Rd |only pxweb-0.9.1/pxweb/man/interactive_pxweb.Rd |only pxweb-0.9.1/pxweb/man/print.api_parameters.Rd |only pxweb-0.9.1/pxweb/man/pxweb_api-class.Rd |only pxweb-0.9.1/pxweb/man/pxweb_levels_remove_headers.Rd |only pxweb-0.9.1/pxweb/man/reorder_and_check_dims.Rd |only pxweb-0.9.1/pxweb/man/temp_api_file_path.Rd |only pxweb-0.9.1/pxweb/man/temp_api_folder_path.Rd |only pxweb-0.9.1/pxweb/man/test_pxweb_api.Rd |only pxweb-0.9.1/pxweb/man/test_pxweb_api_get_data.Rd |only pxweb-0.9.1/pxweb/man/test_pxweb_api_get_node_metadata.Rd |only pxweb-0.9.1/pxweb/man/test_pxweb_api_get_nodes.Rd |only pxweb-0.9.1/pxweb/man/text_to_url.Rd |only pxweb-0.9.1/pxweb/man/update_pxweb_apis.Rd |only pxweb-0.9.1/pxweb/man/write_api_list.Rd |only pxweb-0.9.1/pxweb/tests/testthat/test-PxWebApiData_ApiData.R |only pxweb-0.9.1/pxweb/tests/testthat/test-api_catalogue.R |only pxweb-0.9.1/pxweb/tests/testthat/test-api_parameters.R |only pxweb-0.9.1/pxweb/tests/testthat/test-apis_in_catalogue.R |only pxweb-0.9.1/pxweb/tests/testthat/test-base_url.R |only pxweb-0.9.1/pxweb/tests/testthat/test-big_query.R |only pxweb-0.9.1/pxweb/tests/testthat/test-clean_pxweb.R |only pxweb-0.9.1/pxweb/tests/testthat/test-get_pxweb_data.R |only pxweb-0.9.1/pxweb/tests/testthat/test-get_pxweb_dims.R |only pxweb-0.9.1/pxweb/tests/testthat/test-get_pxweb_levels.R |only pxweb-0.9.1/pxweb/tests/testthat/test-get_pxweb_metadata.R |only pxweb-0.9.1/pxweb/tests/testthat/test-interactive_pxweb.R |only pxweb-0.9.1/pxweb/tests/testthat/test-multiple_queries_data.R |only pxweb-0.9.1/pxweb/tests/testthat/test-pxweb_api_class.R |only pxweb-0.9.1/pxweb/tests/testthat/test-pxweb_examples.R |only pxweb-0.9.1/pxweb/tests/testthat/test-test_pxweb_api.R |only pxweb-0.9.1/pxweb/tests/testthat/test-utils_internal.R |only pxweb-0.9.1/pxweb/tests/testthat/test-x_deprecated_get_pxweb_data.R |only 136 files changed, 1135 insertions(+), 573 deletions(-)
Title: Composable Preprocessing Operators and Pipelines for Machine
Learning
Description: Toolset that enriches 'mlr' with a diverse set of preprocessing
operators. Composable Preprocessing Operators ("CPO"s) are first-class
R objects that can be applied to data.frames and 'mlr' "Task"s to modify
data, can be attached to 'mlr' "Learner"s to add preprocessing to machine
learning algorithms, and can be composed to form preprocessing pipelines.
Author: Martin Binder [aut, cre],
Bernd Bischl [ctb],
Michel Lang [ctb],
Lars Kotthoff [ctb]
Maintainer: Martin Binder <developer.mb706@doublecaret.com>
Diff between mlrCPO versions 0.3.7-1 dated 2021-01-11 and 0.3.7-2 dated 2021-02-24
DESCRIPTION | 6 +-- MD5 | 24 ++++++------- NEWS | 3 + build/vignette.rds |binary inst/doc/a_1_getting_started.html | 53 ++++++------------------------ inst/doc/a_2_mlrCPO_core.html | 53 ++++++------------------------ inst/doc/a_3_all_CPOs.html | 53 ++++++------------------------ inst/doc/a_4_custom_CPOs.html | 55 ++++++-------------------------- inst/doc/z_1_getting_started_terse.html | 53 ++++++------------------------ inst/doc/z_2_mlrCPO_core_terse.html | 53 ++++++------------------------ inst/doc/z_3_all_CPOs_terse.html | 53 ++++++------------------------ inst/doc/z_4_custom_CPOs_terse.html | 53 ++++++------------------------ tests/testthat/test_cpo_filter.R | 7 ++++ 13 files changed, 114 insertions(+), 352 deletions(-)
Title: Simulate Evapotranspiration and Soil Moisture with the SVAT
Model LWF-Brook90
Description: Provides a flexible and easy-to use interface for the soil vegetation
atmosphere transport (SVAT) model LWF-BROOK90, written in Fortran.
The model simulates daily transpiration, interception, soil and snow evaporation,
streamflow and soil water fluxes through a soil profile covered with vegetation,
as described in Hammel & Kennel (2001, ISBN:978-3-933506-16-0) and Federer et al. (2003)
<doi:10.1175/1525-7541(2003)004%3C1276:SOAETS%3E2.0.CO;2>. A set of high-level functions
for model set up, execution and parallelization provides easy access to plot-level SVAT
simulations, as well as multi-run and large-scale applications.
Author: Paul Schmidt-Walter [aut, cre]
(<https://orcid.org/0000-0003-2699-0893>),
Volodymyr Trotsiuk [aut] (<https://orcid.org/0000-0002-8363-656X>),
Klaus Hammel [aut],
Martin Kennel [aut],
Anthony Federer [aut],
Robert Nuske [ctb] (<https://orcid.org/0000-0001-9773-2061>),
Bavarian State Institute of Forestry (LWF) [cph, fnd],
Northwest German Forest Research Institute (NW-FVA) [cph, fnd]
Maintainer: Paul Schmidt-Walter <paulsw@posteo.de>
Diff between LWFBrook90R versions 0.4.3 dated 2021-02-09 and 0.4.4 dated 2021-02-24
DESCRIPTION | 18 +++++----- MD5 | 24 ++++++------- NEWS.md | 4 ++ R/r_lwfbrook90.R | 4 +- README.md | 24 +++++++------ build/vignette.rds |binary man/figures/README-unnamed-chunk-5-1.png |binary src/PFILE.h | 2 - src/PREINCHK.h | 4 +- src/SWCHEK.h | 4 +- src/VARDCL.h | 2 - src/md_brook90.f95 | 54 ++++++++++++++++--------------- src/skeleton.c | 4 +- 13 files changed, 77 insertions(+), 67 deletions(-)
Title: Package for Sequence Analysis by Local Score
Description: Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.archives-ouvertes.fr/hal-00714174> ; S. Karlin and S. Altschul (1990) <https://www.pnas.org/content/87/6/2264> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.archives-ouvertes.fr/hal-00937529v1> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
Author: Sebastian Simon [aut],
David Robelin [aut, cre],
Sabine Mercier [aut],
Sebastien Dejean [aut],
The authors of Eigen the library for the included version of Eigen
[cph]
Maintainer: David Robelin <david.robelin@inrae.fr>
Diff between localScore versions 1.0.4 dated 2021-02-23 and 1.0.6 dated 2021-02-24
localScore-1.0.4/localScore/inst/doc/localScorePackageDocumentation.pdf |only localScore-1.0.6/localScore/DESCRIPTION | 8 +++--- localScore-1.0.6/localScore/MD5 | 12 +++++----- localScore-1.0.6/localScore/build/vignette.rds |binary localScore-1.0.6/localScore/inst/doc/localScorePackageDocumentation.html |only localScore-1.0.6/localScore/src/function_wrapper.cpp | 3 -- localScore-1.0.6/localScore/src/pValueMethods.cpp | 12 +++++----- localScore-1.0.6/localScore/src/testsCpp/tests.cpp | 2 - 8 files changed, 18 insertions(+), 19 deletions(-)
Title: Animal Activity Statistics
Description: Provides functions to express clock time data relative to
anchor points (typically solar); fit kernel density functions to animal
activity time data; plot activity distributions; quantify overall
levels of activity; statistically compare activity metrics through
bootstrapping; evaluate variation in linear variables with time (or
other circular variables).
Author: Marcus Rowcliffe
Maintainer: Marcus Rowcliffe <marcus.rowcliffe@ioz.ac.uk>
Diff between activity versions 1.3 dated 2019-09-09 and 1.3.1 dated 2021-02-24
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/activity_code.r | 16 +++++++++------- man/BCIspeed.Rd | 4 +++- man/BCItime.Rd | 4 +++- man/activity.Rd | 1 - man/fitact.Rd | 28 +++++++++++++++++++--------- man/gettime.Rd | 7 +++++-- man/plot.actmod.Rd | 18 +++++++++++++----- man/plot.lincircmod.Rd | 12 ++++++++++-- man/transtime.Rd | 8 ++++++-- 11 files changed, 82 insertions(+), 44 deletions(-)
Title: Ensemble Methods for Survival Data with Time-Varying Covariates
Description: Implements the conditional inference forest and relative risk forest
algorithm to modeling left-truncated right-censored data with time-invariant
covariates, and (left-truncated) right-censored survival data with time-varying
covariates. It also provides functions to tune the parameters and evaluate the
model fit. See Yao et al. (2020) <arXiv:2006.00567>.
Author: Weichi Yao [aut, cre],
Halina Frydman [aut],
Denis Larocque [aut],
Jeffrey S. Simonoff [aut]
Maintainer: Weichi Yao <wy635@stern.nyu.edu>
Diff between LTRCforests versions 0.5.2 dated 2020-10-29 and 0.5.5 dated 2021-02-24
DESCRIPTION | 10 +- MD5 | 16 +-- R/LTRCforests-package.R | 4 R/ltrccif.R | 2 R/ltrcrrf.R | 2 R/predictProb.R | 193 +++++++++++++++++++++++---------------------- man/LTRCforests-package.Rd | 4 man/ltrccif.Rd | 2 man/ltrcrrf.Rd | 2 9 files changed, 123 insertions(+), 112 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 0.12.5 dated 2021-01-09 and 0.13.0 dated 2021-02-24
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Title: D-Vine Quantile Regression
Description: Implements D-vine quantile regression models with
parametric or nonparametric pair-copulas. See
Kraus and Czado (2017) <doi:10.1016/j.csda.2016.12.009> and
Schallhorn et al. (2017) <arXiv:1705.08310>.
Author: Thomas Nagler [aut, cre],
Dani Kraus [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between vinereg versions 0.7.2 dated 2020-11-17 and 0.7.3 dated 2021-02-24
DESCRIPTION | 10 MD5 | 32 - NEWS.md | 10 R/predict.vinereg.R | 3 R/tools.R | 5 R/vinereg.R | 5 build/vignette.rds |binary inst/doc/abalone-example.R | 11 inst/doc/abalone-example.Rmd | 25 - inst/doc/abalone-example.html | 766 ++++++++++++++++++----------------------- inst/doc/bike-rental.R | 10 inst/doc/bike-rental.Rmd | 11 inst/doc/bike-rental.html | 770 ++++++++++++++++-------------------------- src/vinereg.cpp | 70 +-- tests/testthat.R | 3 vignettes/abalone-example.Rmd | 25 - vignettes/bike-rental.Rmd | 11 17 files changed, 770 insertions(+), 997 deletions(-)
Title: Inference and Prediction in an Illness-Death Model
Description: Newly developed methods for the estimation of several probabilities
in an illness-death model. The package can be used to obtain nonparametric and
semiparametric estimates for: transition probabilities, occupation probabilities,
cumulative incidence function and the sojourn time distributions.
Additionally, it is possible to fit proportional hazards regression models
in each transition of the Illness-Death Model. Several auxiliary
functions are also provided which can be used for marginal
estimation of the survival functions.
Author: Luis Meira-Machado, Marta Sestelo and Gustavo Soutinho
Maintainer: Marta Sestelo <sestelo@uvigo.es>
Diff between survidm versions 1.3.0 dated 2021-02-16 and 1.3.1 dated 2021-02-24
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- R/autoplot.survIDM.R | 26 +++++++++++++------------- build/partial.rdb |binary man/autoplot.survIDM.Rd | 2 +- 6 files changed, 24 insertions(+), 24 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.20 dated 2020-11-15 and 1.5.21 dated 2021-02-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/ABdescrip.R | 7 +++++-- 3 files changed, 11 insertions(+), 8 deletions(-)
Title: Access and Search MedRxiv and BioRxiv Preprint Data
Description: An increasingly important source of health-related bibliographic
content are preprints - preliminary versions of research articles that have
yet to undergo peer review. The two preprint repositories most relevant to
health-related sciences are medRxiv <https://www.medrxiv.org/> and
bioRxiv <https://www.biorxiv.org/>, both of which are operated by the Cold
Spring Harbor Laboratory. 'medrxivr' provides programmatic access to the
'Cold Spring Harbour Laboratory (CSHL)' API <https://api.biorxiv.org/>,
allowing users to easily download medRxiv and bioRxiv preprint metadata
(e.g. title, abstract, publication date, author list, etc) into R.
'medrxivr' also provides functions to search the downloaded preprint records
using regular expressions and Boolean logic, as well as helper functions
that allow users to export their search results to a .BIB file for easy
import to a reference manager and to download the full-text PDFs of
preprints matching their search criteria.
Author: Luke McGuinness [aut, cre] (<https://orcid.org/0000-0001-8730-9761>),
Lena Schmidt [aut] (<https://orcid.org/0000-0003-0709-8226>),
Tuija Sonkkila [rev],
Najko Jahn [rev]
Maintainer: Luke McGuinness <luke.mcguinness@bristol.ac.uk>
Diff between medrxivr versions 0.0.4 dated 2020-12-11 and 0.0.5 dated 2021-02-24
medrxivr-0.0.4/medrxivr/inst/paper.html |only medrxivr-0.0.5/medrxivr/DESCRIPTION | 8 medrxivr-0.0.5/medrxivr/MD5 | 52 +- medrxivr-0.0.5/medrxivr/NAMESPACE | 1 medrxivr-0.0.5/medrxivr/NEWS.md | 11 medrxivr-0.0.5/medrxivr/R/helpers.R | 13 medrxivr-0.0.5/medrxivr/R/mx_api.R | 22 - medrxivr-0.0.5/medrxivr/R/mx_search.R | 227 ++++++++-- medrxivr-0.0.5/medrxivr/R/mx_snapshot.R | 5 medrxivr-0.0.5/medrxivr/R/mx_syntax.R |only medrxivr-0.0.5/medrxivr/README.md | 53 ++ medrxivr-0.0.5/medrxivr/build/vignette.rds |binary medrxivr-0.0.5/medrxivr/inst/WORDLIST | 12 medrxivr-0.0.5/medrxivr/inst/doc/medrxivr.html | 311 --------------- medrxivr-0.0.5/medrxivr/inst/paper.bib | 56 +- medrxivr-0.0.5/medrxivr/man/fix_caps.Rd |only medrxivr-0.0.5/medrxivr/man/fix_near.Rd |only medrxivr-0.0.5/medrxivr/man/fix_wildcard.Rd |only medrxivr-0.0.5/medrxivr/man/medrxivr.Rd | 26 - medrxivr-0.0.5/medrxivr/man/mx_api_content.Rd | 10 medrxivr-0.0.5/medrxivr/man/mx_api_doi.Rd | 2 medrxivr-0.0.5/medrxivr/man/mx_caps.Rd |only medrxivr-0.0.5/medrxivr/man/mx_info.Rd | 40 - medrxivr-0.0.5/medrxivr/man/mx_reporter.Rd |only medrxivr-0.0.5/medrxivr/man/mx_search.Rd | 23 + medrxivr-0.0.5/medrxivr/man/print_full_results.Rd |only medrxivr-0.0.5/medrxivr/man/run_search.Rd |only medrxivr-0.0.5/medrxivr/tests/testthat/test-api.R | 3 medrxivr-0.0.5/medrxivr/tests/testthat/test-crosscheck.R | 1 medrxivr-0.0.5/medrxivr/tests/testthat/test-helpers.R | 11 medrxivr-0.0.5/medrxivr/tests/testthat/test-search.R | 57 ++ medrxivr-0.0.5/medrxivr/tests/testthat/test-syntax.R |only 32 files changed, 473 insertions(+), 471 deletions(-)
Title: Compare Supervised Machine Learning Models Using Shiny App
Description: Implementation of a shiny app to easily compare supervised machine learning model performances.
You provide the data and configure each model parameter directly on the shiny app.
Different supervised learning algorithms can be tested either on Spark or H2O frameworks to suit your regression and classification tasks.
Implementation of available machine learning models on R has been done by Lantz (2013, ISBN:9781782162148).
Author: Jean Bertin
Maintainer: Jean Bertin <jean.bertin@mines-paris.org>
Diff between shinyML versions 1.0.0 dated 2020-10-03 and 1.0.1 dated 2021-02-24
shinyML-1.0.0/shinyML/build |only shinyML-1.0.0/shinyML/inst |only shinyML-1.0.0/shinyML/vignettes |only shinyML-1.0.1/shinyML/DESCRIPTION | 16 +-- shinyML-1.0.1/shinyML/LICENSE.note | 2 shinyML-1.0.1/shinyML/MD5 | 25 +----- shinyML-1.0.1/shinyML/NAMESPACE | 1 shinyML-1.0.1/shinyML/NEWS.md | 8 + shinyML-1.0.1/shinyML/R/shinyML_classification.R | 49 ++++++++--- shinyML-1.0.1/shinyML/R/shinyML_regression.R | 75 ++++++++++++------ shinyML-1.0.1/shinyML/README.md | 94 ++++++++++------------- 11 files changed, 156 insertions(+), 114 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included. See Koenker (2006) <doi:10.1017/CBO9780511754098> and
Koenker et al (2017) <doi:10.1201/9781315120256>.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Blaise Melly [ctb] (Contributions to preprocessing code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Cleve Moler [ctb] (author of several linpack routines),
Yousef Saad [ctb] (author of sparskit2),
Victor Chernozhukov [ctb] (contributions to extreme value inference
code),
Ivan Fernandez-Val [ctb] (contributions to extreme value inference
code),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.83 dated 2021-01-22 and 5.85 dated 2021-02-24
DESCRIPTION | 9 ++- MD5 | 12 ++--- R/rqss.R | 120 +++++++++++++++++++++++++---------------------------- build/vignette.rds |binary inst/ChangeLog | 11 ++++ man/barro.Rd | 2 man/rq.fit.sfnc.Rd | 6 -- 7 files changed, 82 insertions(+), 78 deletions(-)
Title: Symbolic Differentiation
Description: R-based solution for symbolic differentiation. It admits
user-defined function as well as function substitution
in arguments of functions to be differentiated. Some symbolic
simplification is part of the work.
Author: Andrew Clausen [aut],
Serguei Sokol [aut, cre] (<https://orcid.org/0000-0002-5674-3327>),
Andreas Rappold [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between Deriv versions 4.1.2 dated 2020-12-10 and 4.1.3 dated 2021-02-24
DESCRIPTION | 8 +++---- MD5 | 10 ++++----- NEWS | 6 +++++ R/Deriv.R | 56 ++++++++++++++++++++++++++++++--------------------- man/Deriv-package.Rd | 4 +-- man/Deriv.Rd | 11 ++++++---- 6 files changed, 57 insertions(+), 38 deletions(-)
Title: Statistical Toolbox for Sedimentary Provenance Analysis
Description: Bundles a number of established statistical methods to facilitate the visual interpretation of large datasets in sedimentary geology. Includes functionality for adaptive kernel density estimation, principal component analysis, correspondence analysis, multidimensional scaling, generalised procrustes analysis and individual differences scaling using a variety of dissimilarity measures. Univariate provenance proxies, such as single-grain ages or (isotopic) compositions are compared with the Kolmogorov-Smirnov, Kuiper or Sircombe-Hazelton L2 distances. Categorical provenance proxies such as chemical compositions are compared with the Aitchison and Bray-Curtis distances, and point-counting data with the chi-square distance. Also included are tools to plot compositional and point-counting data on ternary diagrams and point-counting data on radial plots, to calculate the sample size required for specified levels of statistical precision, and to assess the effects of hydraulic sorting on detrital compositions. Includes an intuitive query-based user interface for users who are not proficient in R.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between provenance versions 2.4 dated 2020-03-19 and 3.0 dated 2021-02-24
DESCRIPTION | 12 ++--- MD5 | 56 ++++++++++++------------ R/gui.R | 18 +++---- R/indscal.R | 5 -- R/provenance.R | 4 - R/toolbox.R | 102 +++++++++++++++++++++------------------------ README.md | 11 ++-- man/KDE.Rd | 3 - man/KDEs.Rd | 14 +++++- man/MDS.Rd | 3 - man/as.compositional.Rd | 2 man/minsorting.Rd | 13 ++++- man/plot.GPA.Rd | 3 - man/plot.INDSCAL.Rd | 17 ++++++- man/plot.MDS.Rd | 17 ++++++- man/plot.PCA.Rd | 11 +++- man/plot.compositional.Rd | 3 - man/plot.distributional.Rd | 12 ++++- man/plot.minsorting.Rd | 3 - man/plot.ternary.Rd | 19 ++++++-- man/procrustes.Rd | 2 man/provenance.Rd | 22 ++++----- man/radialplot.Rd | 19 +++++++- man/read.compositional.Rd | 14 ++++-- man/read.counts.Rd | 14 ++++-- man/read.densities.Rd | 10 +++- man/read.distributional.Rd | 15 +++++- man/subset.Rd | 6 -- man/ternary.ellipse.Rd | 9 +-- 29 files changed, 268 insertions(+), 171 deletions(-)
Title: Permutation Tests for Time Series Data
Description: Helps you determine the analysis window to use when analyzing densely-sampled
time-series data, such as EEG data, using permutation testing (Maris & Oostenveld, 2007)
<doi:10.1016/j.jneumeth.2007.03.024>. These permutation tests can help identify the timepoints
where significance of an effect begins and ends, and the results can be plotted in various
types of heatmap for reporting. Mixed-effects models are supported using an implementation of
the approach by Lee & Braun (2012) <doi:10.1111/j.1541-0420.2011.01675.x>.
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between permutes versions 2.0 dated 2021-02-22 and 2.0.1 dated 2021-02-24
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/buildmer.R | 4 ++-- build/vignette.rds |binary data/MMN.RData |binary inst/doc/buildmer.R | 2 +- inst/doc/buildmer.Rmd | 8 ++++---- inst/doc/buildmer.pdf |binary inst/doc/permutes.pdf |binary vignettes/buildmer.Rmd | 8 ++++---- 10 files changed, 23 insertions(+), 23 deletions(-)
Title: Creates Safety Results Summary in XML to Upload to EudraCT
Description: The remit of the European Clinical Trials Data Base (EudraCT <https://eudract.ema.europa.eu/> ) is to provide open access to summaries of all registered clinical trial results; thus aiming to prevent non-reporting of negative results and provide open-access to results to inform future research. The amount of information required and the format of the results, however, imposes a large extra workload at the end of studies on clinical trial units. In particular, the adverse-event-reporting component requires entering: each unique combination of treatment group and safety event; for every such event above, a further 4 pieces of information (body system, number of occurrences, number of subjects, number exposed) for non-serious events, plus an extra three pieces of data for serious adverse events (numbers of causally related events, deaths, causally related deaths). This package prepares the required statistics needed by EudraCT and formats them into the precise requirements to directly upload an XML file into the web portal, with no further data entry by hand.
Author: Simon Bond [cre],
Beatrice Pantaleo [aut]
Maintainer: Simon Bond <simon.bond@addenbrookes.nhs.uk>
Diff between eudract versions 0.9.2 dated 2020-04-06 and 0.9.3 dated 2021-02-24
DESCRIPTION | 10 ++++---- MD5 | 40 +++++++++++++++++--------------- NAMESPACE | 2 - NEWS.md | 5 ++++ R/safety_summary.R | 2 + build/vignette.rds |binary inst/doc/eudract.Rmd | 2 - inst/doc/eudract.html | 19 ++++++--------- man/append_xml.Rd | 22 ++++++++--------- man/create.safety_summary.Rd | 2 - man/df_to_char.Rd | 28 +++++++++++----------- man/eudract_convert.Rd | 2 - man/print.safety_summary.Rd | 32 ++++++++++++------------- man/safety.Rd | 8 ++++-- man/safety_summary.Rd | 2 - man/simple_safety_xml.Rd | 2 - man/soc_code.Rd | 8 ++++-- tests/testthat/data/fix_ucl.R |only tests/testthat/data/output_from_ucl.xml |only tests/testthat/data/simple_from_ucl.xml |only tests/testthat/data/socless.xml |only tests/testthat/test_errors.R | 11 ++++++++ vignettes/eudract.Rmd | 2 - 23 files changed, 111 insertions(+), 88 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE), measurement models are typically multivariate normal factor models.
Linear mixed effects SDE's estimated via maximum likelihood and optimization are the default.
Nonlinearities, (state dependent parameters) and random effects on all parameters
are possible, using either max likelihood / max a posteriori optimization
(with optional importance sampling) or
Stan's Hamiltonian Monte Carlo sampling. See <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf>
for details. Priors may be used. For the conceptual
overview of the hierarchical Bayesian linear SDE approach, see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Modeling>.
Exogenous inputs may also be included, for an overview of such possibilities see <https://www.researchgate.net/publication/328221807_Understanding_the_Time_Course_of_Interventions_with_Continuous_Time_Dynamic_Models> .
Stan based functions are not available on 32 bit Windows systems at present.
<https://cdriver.netlify.app/> contains some tutorial blog posts.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 3.4.1 dated 2020-12-18 and 3.4.2 dated 2021-02-24
DESCRIPTION | 12 MD5 | 88 ++-- NEWS | 7 R/JKalman.R |only R/covml.R | 92 ++-- R/ctCheckFit.R | 124 ++++-- R/ctDiscretePars.R | 74 ++- R/ctJacobian.R | 23 - R/ctKalman.R | 19 - R/ctModelHigherOrder.R | 2 R/ctModelLatex.R | 24 - R/ctStanContinuousPars.R | 10 R/ctStanData.R | 63 ++- R/ctStanFit.R | 11 R/ctStanKalman.R | 50 -- R/ctStanModelWriter.R | 217 ++++++----- R/ctSummarise.R | 588 ++++++++++++++++--------------- R/extract.ctStanFit.R | 19 - R/gdbfgs.R |only R/isdiag.R | 6 R/listOfMatrices.R | 2 R/sgd.R | 384 ++++++++++++-------- R/sgdmcmc.R | 47 +- R/stanoptimis.R | 450 ++++++----------------- R/summary.ctStanFit.R | 4 build/vignette.rds |binary data/ctstantestdat.rda |binary data/ctstantestfit.rda |binary inst/doc/hierarchicalmanual.pdf |binary man/ctAddSamples.Rd | 1 man/ctCheckFit.Rd | 12 man/ctExtract.Rd | 4 man/ctStanDiscretePars.Rd | 9 man/isdiag.Rd | 6 man/stanoptimis.Rd | 7 src/stan_files/ctsm.stan | 196 +++++----- src/stan_files/ctsmgen.stan | 194 +++++----- tests/testthat/test-ctLOO.R | 2 tests/testthat/test-ctRaschExampleTest.R | 16 tests/testthat/test-dtVct.R | 40 -- tests/testthat/test-knownFits.R | 7 tests/testthat/test-nonlinearVlinear.R | 10 tests/testthat/test-stantipred.R | 2 tests/testthat/test-sunspots.R | 4 tests/testthat/test-timevarying.R | 11 tests/testthat/test-ukfpoptest.R | 34 + 46 files changed, 1505 insertions(+), 1366 deletions(-)
Title: Statistical Methods for Composite Material Data
Description: An implementation of the statistical methods commonly
used for advanced composite materials in aerospace applications.
This package focuses on calculating basis values (lower tolerance
bounds) for material strength properties, as well as performing the
associated diagnostic tests. This package provides functions for
calculating basis values assuming several different distributions,
as well as providing functions for non-parametric methods of computing
basis values. Functions are also provided for testing the hypothesis
that there is no difference between strength and modulus data from an
alternate sample and that from a "qualification" or "baseline" sample.
For a discussion of these statistical methods and their use, see the
Composite Materials Handbook, Volume 1 (2012, ISBN: 978-0-7680-7811-4).
Additional details about this package are available in the paper by
Kloppenborg (2020, <doi:10.21105/joss.02265>).
Author: Stefan Kloppenborg [aut, cre],
Billy Cheng [ctb],
Ally Fraser [ctb]
Maintainer: Stefan Kloppenborg <stefan@kloppenborg.ca>
Diff between cmstatr versions 0.7.1 dated 2020-12-10 and 0.8.0 dated 2021-02-24
DESCRIPTION | 8 MD5 | 172 NAMESPACE | 168 NEWS.md | 172 R/adk.R | 419 - R/adtest.R | 612 +- R/basis.R | 3225 +++++----- R/checks.R | 170 R/cmstatr.R | 12 R/cv.R | 77 R/data.R | 30 R/equiv.R | 1884 +++--- R/generics.R | 28 R/levene.R | 457 - R/mnr.R | 609 +- R/norm.R | 791 +- R/plotting.R | 212 R/util.R | 78 R/verifytidy.R | 54 README.md | 270 build/vignette.rds |binary inst/CITATION | 34 inst/WORDLIST | 78 inst/doc/adktest.R | 12 inst/doc/adktest.Rmd | 160 inst/doc/adktest.html | 684 +- inst/doc/cmstatr_Graphing.R | 362 - inst/doc/cmstatr_Graphing.Rmd | 676 +- inst/doc/cmstatr_Graphing.html | 1232 ++-- inst/doc/cmstatr_Tutorial.R | 420 - inst/doc/cmstatr_Tutorial.Rmd | 902 +-- inst/doc/cmstatr_Tutorial.html | 1368 ++-- inst/extdata/k1.vangel.csv | 32 inst/extdata/k2.vangel.csv | 32 man/ad_ksample.Rd | 171 man/anderson_darling.Rd | 245 man/augment.mnr.Rd | 17 man/basis.Rd | 888 +-- man/calc_cv_star.Rd | 87 man/carbon.fabric.Rd | 48 man/cmstatr-package.Rd | 62 man/cv.Rd | 84 man/equiv_change_mean.Rd | 316 - man/equiv_mean_extremum.Rd | 343 - man/glance.adk.Rd | 101 man/glance.anderson_darling.Rd | 105 man/glance.basis.Rd | 163 man/glance.equiv_change_mean.Rd | 167 man/glance.equiv_mean_extremum.Rd | 137 man/glance.levene.Rd | 107 man/glance.mnr.Rd | 93 man/hk_ext.Rd | 198 man/k_equiv.Rd | 178 man/k_factor_normal.Rd | 182 man/levene_test.Rd | 159 man/maximum_normed_residual.Rd | 184 man/nonpara_binomial_rank.Rd | 154 man/normalize_group_mean.Rd | 102 man/normalize_ply_thickness.Rd | 141 man/reexports.Rd | 6 man/stat_esf.Rd | 94 man/stat_normal_surv_func.Rd | 96 man/transform_mod_cv.Rd | 254 tests/figs/deps.txt | 6 tests/figs/plotting/stat-esf.svg | 190 tests/figs/plotting/stat-normal-surv-func-and-stat-esf.svg | 2538 ++++---- tests/figs/plotting/stat-normal-surv-func.svg | 120 tests/spelling.R | 6 tests/testthat.R | 8 tests/testthat/test-adk.R | 430 - tests/testthat/test-adtest.R | 516 - tests/testthat/test-basis.R | 3824 ++++++------- tests/testthat/test-checks.R | 219 tests/testthat/test-cv.R | 49 tests/testthat/test-equiv.R | 918 +-- tests/testthat/test-levene.R | 426 - tests/testthat/test-lintr.R | 18 tests/testthat/test-mnr.R | 820 +- tests/testthat/test-normalize.R | 312 - tests/testthat/test-plotting.R | 88 tests/testthat/test-verifytidy.R | 98 tests/testthat/test-workflow.R | 1434 ++-- vignettes/adktest.Rmd | 160 vignettes/bibliography.json | 90 vignettes/cmstatr_Graphing.Rmd | 676 +- vignettes/cmstatr_Tutorial.Rmd | 902 +-- vignettes/ieee.csl | 706 +- 87 files changed, 17685 insertions(+), 17191 deletions(-)
Title: Random Projection Ensemble Classification
Description: Implements the methodology of "Cannings, T. I. and Samworth, R. J. (2017) Random-projection ensemble classification, J. Roy. Statist. Soc., Ser. B. (with discussion), 79, 959--1035". The random projection ensemble classifier is a general method for classification of high-dimensional data, based on careful combination of the results of applying an arbitrary base classifier to random projections of the feature vectors into a lower-dimensional space. The random projections are divided into non-overlapping blocks, and within each block the projection yielding the smallest estimate of the test error is selected. The random projection ensemble classifier then aggregates the results of applying the base classifier on the selected projections, with a data-driven voting threshold to determine the final assignment.
Author: Timothy I. Cannings and Richard J. Samworth
Maintainer: Timothy I. Cannings <timothy.cannings@ed.ac.uk>
Diff between RPEnsemble versions 0.4 dated 2017-10-07 and 0.5 dated 2021-02-24
DESCRIPTION | 17 +++++++++-------- MD5 | 22 +++++++++++----------- man/Other.classifier.Rd | 3 +-- man/R.Rd | 8 ++------ man/RPChoose.Rd | 5 ++--- man/RPChooseSS.Rd | 6 ++---- man/RPEnsemble-package.Rd | 11 +++++------ man/RPEnsembleClass.Rd | 3 +-- man/RPGenerate.Rd | 3 +-- man/RPModel.Rd | 5 ++--- man/RPParallel.Rd | 3 +-- man/RPalpha.Rd | 4 +--- 12 files changed, 38 insertions(+), 52 deletions(-)
Title: Bayesian Estimation of the Evolutionary Rate Matrix
Description: The Evolutionary Rate Matrix is a variance-covariance matrix which describes both the rates of trait evolution and the evolutionary correlation among multiple traits. This package has functions to estimate these parameters using Bayesian MCMC. It is possible to test if the pattern of evolutionary correlations among traits has changed between predictive regimes painted along the branches of the phylogenetic tree. Regimes can be created a priori or estimated as part of the MCMC under a joint estimation approach. The package has functions to run MCMC chains, plot results, evaluate convergence, and summarize posterior distributions.
Author: Daniel Caetano [aut, cre],
Luke Harmon [aut]
Maintainer: Daniel Caetano <caetanods1@gmail.com>
Diff between ratematrix versions 1.2.2 dated 2020-02-26 and 1.2.3 dated 2021-02-24
ratematrix-1.2.2/ratematrix/README.md |only ratematrix-1.2.3/ratematrix/DESCRIPTION | 14 - ratematrix-1.2.3/ratematrix/MD5 | 95 ++++----- ratematrix-1.2.3/ratematrix/NAMESPACE | 2 ratematrix-1.2.3/ratematrix/R/RcppExports.R | 4 ratematrix-1.2.3/ratematrix/R/check_phy_list.R |only ratematrix-1.2.3/ratematrix/R/computeESS.R | 30 -- ratematrix-1.2.3/ratematrix/R/estimateTimeMCMC.R | 8 ratematrix-1.2.3/ratematrix/R/extractCorrelation.R | 28 +- ratematrix-1.2.3/ratematrix/R/fastSimmap.R | 96 +++++++-- ratematrix-1.2.3/ratematrix/R/getStartPointFromPosterior.R |only ratematrix-1.2.3/ratematrix/R/likelihoodFunction.R | 3 ratematrix-1.2.3/ratematrix/R/logAnalyzer.R | 7 ratematrix-1.2.3/ratematrix/R/makePrior.R | 13 - ratematrix-1.2.3/ratematrix/R/mergePosterior.R | 16 - ratematrix-1.2.3/ratematrix/R/multRegimeJointMCMC.R | 6 ratematrix-1.2.3/ratematrix/R/multRegimeMCMC.R | 20 + ratematrix-1.2.3/ratematrix/R/plotPrior.R | 15 - ratematrix-1.2.3/ratematrix/R/plotRatematrix.R | 28 -- ratematrix-1.2.3/ratematrix/R/ratematrixJointMCMC.R | 33 --- ratematrix-1.2.3/ratematrix/R/ratematrixMCMC.R | 66 ++---- ratematrix-1.2.3/ratematrix/R/readMCMC.R | 101 +++++++++- ratematrix-1.2.3/ratematrix/R/samplePrior.R | 8 ratematrix-1.2.3/ratematrix/R/singleRegimeMCMC.R | 9 ratematrix-1.2.3/ratematrix/R/testRatematrix.R | 11 - ratematrix-1.2.3/ratematrix/build/vignette.rds |binary ratematrix-1.2.3/ratematrix/data/anoles.RData |binary ratematrix-1.2.3/ratematrix/data/centrarchidae.RData |binary ratematrix-1.2.3/ratematrix/inst/doc/Intro_on_the_package.html | 19 - ratematrix-1.2.3/ratematrix/inst/doc/Making_prior_on_ratematrix.html | 28 +- ratematrix-1.2.3/ratematrix/inst/doc/Set_custom_starting_point.html | 38 +-- ratematrix-1.2.3/ratematrix/inst/include/distributions_and_helpers.h | 47 ---- ratematrix-1.2.3/ratematrix/man/anoles.Rd | 4 ratematrix-1.2.3/ratematrix/man/centrarchidae.Rd | 4 ratematrix-1.2.3/ratematrix/man/computeESS.Rd | 30 -- ratematrix-1.2.3/ratematrix/man/estimateTimeMCMC.Rd | 6 ratematrix-1.2.3/ratematrix/man/extractCorrelation.Rd | 28 +- ratematrix-1.2.3/ratematrix/man/fastSimmap.Rd | 35 ++- ratematrix-1.2.3/ratematrix/man/getStartPointFromPosterior.Rd |only ratematrix-1.2.3/ratematrix/man/makePrior.Rd | 13 - ratematrix-1.2.3/ratematrix/man/mergePosterior.Rd | 16 - ratematrix-1.2.3/ratematrix/man/plotPrior.Rd | 16 - ratematrix-1.2.3/ratematrix/man/plotRatematrix.Rd | 29 -- ratematrix-1.2.3/ratematrix/man/ratematrixJointMCMC.Rd | 31 --- ratematrix-1.2.3/ratematrix/man/ratematrixMCMC.Rd | 36 +-- ratematrix-1.2.3/ratematrix/man/readMCMC.Rd | 10 ratematrix-1.2.3/ratematrix/man/readMCMC_Mk.Rd |only ratematrix-1.2.3/ratematrix/man/samplePrior.Rd | 8 ratematrix-1.2.3/ratematrix/man/testRatematrix.Rd | 11 - ratematrix-1.2.3/ratematrix/src/MultRegimeMCMC.cpp | 67 ++++++ ratematrix-1.2.3/ratematrix/src/RcppExports.cpp | 14 + 51 files changed, 526 insertions(+), 577 deletions(-)
Title: Analyzing Ecological Networks
Description: A collection of advanced tools, methods and models specifically designed for analyzing different types of ecological networks - especially antagonistic (food webs, host-parasite), mutualistic (plant-pollinator, plant-fungus, etc) and competitive networks, as well as their variability in time and space. Statistical models are developed to describe and understand the mechanisms that determine species interactions, and to decipher the organization of these ecological networks (Ohlmann et al. (2019) <doi:10.1111/ele.13221>, Gonzalez et al. (2020) <doi:10.1101/2020.04.02.021691>, Miele et al. (2021) submitted).
Author: Stephane Dray [ctb], Catherine Matias [ctb], Vincent Miele [aut, cre], Marc Ohlmann [aut], Giovanni Poggiato [ctb], Wilfried Thuiller [ctb]
Maintainer: Vincent Miele <vincent.miele@univ-lyon1.fr>
Diff between econetwork versions 0.4.1 dated 2020-09-02 and 0.5.0 dated 2021-02-24
econetwork-0.4.1/econetwork/README.md |only econetwork-0.5.0/econetwork/DESCRIPTION | 20 ++++++++------- econetwork-0.5.0/econetwork/MD5 | 20 ++++++++++++--- econetwork-0.5.0/econetwork/NAMESPACE | 5 +++ econetwork-0.5.0/econetwork/R/RcppExports.R |only econetwork-0.5.0/econetwork/R/elgrin.R |only econetwork-0.5.0/econetwork/data |only econetwork-0.5.0/econetwork/man/econetwork.Rd | 1 econetwork-0.5.0/econetwork/man/elgrin.Rd |only econetwork-0.5.0/econetwork/man/virtualComCompetition.Rd |only econetwork-0.5.0/econetwork/src |only 11 files changed, 31 insertions(+), 15 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression;
- generalised linear mixed models;
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.16-2 dated 2021-01-27 and 4.17-0 dated 2021-02-24
DESCRIPTION | 10 MD5 | 70 ++-- NAMESPACE | 1 NEWS.md | 44 ++- R/Pagliaro1992.R |only R/crtitle.R | 31 +- R/linregcore.R | 92 ++---- R/meta-internal.R | 15 - R/meta-package.R | 8 R/metabias.R | 724 ++++++++++++++++++++++++++++++++++---------------- R/metabin.R | 14 R/metacont.R | 7 R/metacor.R | 7 R/metagen.R | 7 R/metainc.R | 10 R/metamean.R | 7 R/metaprop.R | 7 R/metarate.R | 7 R/print.meta.R | 40 ++ R/setmethodbias.R |only R/settings.meta.R | 4 R/summary.meta.R | 8 R/trimfill.R | 5 R/update.meta.R | 34 +- data/Pagliaro1992.rda |only man/Pagliaro1992.Rd |only man/metabias.Rd | 176 ++++++++---- man/metabin.Rd | 10 man/metacont.Rd | 5 man/metacor.Rd | 5 man/metagen.Rd | 5 man/metainc.Rd | 8 man/metamean.Rd | 5 man/metaprop.Rd | 5 man/metarate.Rd | 5 man/print.meta.Rd | 18 + man/trimfill.Rd | 2 man/update.meta.Rd | 6 38 files changed, 929 insertions(+), 473 deletions(-)
Title: Local Interpretable Model-Agnostic Explanations
Description: When building complex models, it is often difficult to explain why
the model should be trusted. While global measures such as accuracy are
useful, they cannot be used for explaining why a model made a specific
prediction. 'lime' (a port of the 'lime' 'Python' package) is a method for
explaining the outcome of black box models by fitting a local model around
the point in question an perturbations of this point. The approach is
described in more detail in the article by Ribeiro et al. (2016)
<arXiv:1602.04938>.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
Michaël Benesty [aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between lime versions 0.5.1 dated 2019-11-12 and 0.5.2 dated 2021-02-24
DESCRIPTION | 14 MD5 | 52 - NAMESPACE | 24 NEWS.md | 5 R/lime.R | 2 R/plot_text.R | 8 R/shiny.R | 43 README.md | 41 build/vignette.rds |binary inst/doc/Understanding_lime.R | 22 inst/doc/Understanding_lime.Rmd | 16 inst/doc/Understanding_lime.html | 1406 +++++-------------------------- man/explain.Rd | 64 + man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/interactive_text_explanations.Rd | 9 man/lime-package.Rd | 4 man/lime.Rd | 23 man/plot_explanations.Rd | 5 man/plot_features.Rd | 5 man/plot_image_explanation.Rd | 13 man/plot_superpixels.Rd | 11 man/stop_words_sentences.Rd | 4 man/test_sentences.Rd | 6 man/text_explanations.Rd | 7 man/train_sentences.Rd | 6 vignettes/Understanding_lime.Rmd | 16 27 files changed, 466 insertions(+), 1340 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-13 2021.1-7
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.0.2 dated 2020-06-24 and 5.0.3 dated 2021-02-24
DESCRIPTION | 6 +++--- MD5 | 11 +++++++---- inst/NEWS | 4 ++++ inst/lib |only src/Makevars.in | 11 +++++++++++ src/tbb/build/macos.inc | 4 ++++ 6 files changed, 29 insertions(+), 7 deletions(-)
Title: Early Warning System
Description: The purpose of Early Warning Systems (EWS) is to detect accurately the occurrence of a crisis, which is represented by a binary variable which takes the value of one when the event occurs, and the value of zero otherwise. EWS are a toolbox for policymakers to prevent or attenuate the impact of economic downturns. Modern EWS are based on the econometric framework of Kauppi and Saikkonen (2008) <doi:10.1162/rest.90.4.777>. Specifically, this framework includes four dichotomous models, relying on a logit approach to model the relationship between yield spreads and future recessions, controlling for recession risk factors. These models can be estimated in a univariate or a balanced panel framework as in Candelon, Dumitrescu and Hurlin (2014) <doi:10.1016/j.ijforecast.2014.03.015>. This package provides both methods for estimating these models and a dataset covering 13 OECD countries over a period of 45 years. In addition, this package also provides methods for the analysis of the propagation mechanisms of an exogenous shock, as well as robust confidence intervals for these response functions using a block-bootstrap method as in Lajaunie (2021). This package constitutes a useful toolbox (data and functions) for scholars as well as policymakers.
Author: Jean-Baptiste Hasse [aut], Quentin Lajaunie [aut, cre]
Maintainer: Quentin Lajaunie <quentin_lajaunie@hotmail.fr>
Diff between EWS versions 0.1.0 dated 2020-04-07 and 0.2.0 dated 2021-02-24
EWS-0.1.0/EWS/R/Functions_EWS.R |only EWS-0.2.0/EWS/DESCRIPTION | 16 ++++------- EWS-0.2.0/EWS/MD5 | 29 ++++++++++++++------- EWS-0.2.0/EWS/NAMESPACE | 4 +- EWS-0.2.0/EWS/R/EWS_functions.R |only EWS-0.2.0/EWS/data/data_USA.rda |binary EWS-0.2.0/EWS/data/data_panel.rda |binary EWS-0.2.0/EWS/man/BlockBootstrapp.Rd |only EWS-0.2.0/EWS/man/EWS_AM_Criterion.Rd |only EWS-0.2.0/EWS/man/EWS_CSA_Criterion.Rd |only EWS-0.2.0/EWS/man/EWS_NSR_Criterion.Rd |only EWS-0.2.0/EWS/man/GIRF_Dichotomous_model.Rd |only EWS-0.2.0/EWS/man/GIRF_Index_CI.Rd |only EWS-0.2.0/EWS/man/GIRF_Proba_CI.Rd |only EWS-0.2.0/EWS/man/Logistic_Estimation.Rd | 38 +++++----------------------- EWS-0.2.0/EWS/man/Matrix_lag.Rd | 6 +++- EWS-0.2.0/EWS/man/Simulation_GIRF.Rd |only EWS-0.2.0/EWS/man/Vector_Error.Rd |only EWS-0.2.0/EWS/man/Vector_lag.Rd | 3 ++ EWS-0.2.0/EWS/man/data_USA.Rd | 16 ++++++++--- EWS-0.2.0/EWS/man/data_panel.Rd | 7 +++-- 21 files changed, 58 insertions(+), 61 deletions(-)
Title: PRO-CTCAE Data Management, Analysis, and Graphical Tools
Description: A collection of tools to facilitate standardized analysis
and graphical procedures when using the National Cancer Institute’s
Patient-Reported Outcomes version of the Common Terminology Criteria for
Adverse Events (PRO-CTCAE).
Author: Blake Langlais [aut, cre], Amylou Dueck [aut]
Maintainer: Blake Langlais <langlais.blake@mayo.edu>
Diff between ProAE versions 0.1.0 dated 2021-02-22 and 0.1.1 dated 2021-02-24
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/ProAE.R | 12 ++++++------ R/toxFigures.R | 8 ++++---- R/toxScores.R | 2 +- man/PROCTCAE_table.Rd | 4 ++-- man/tox_acute.Rd | 2 +- man/tox_chronic.Rd | 2 +- man/tox_cumulative.Rd | 2 +- man/tox_late.Rd | 2 +- 10 files changed, 29 insertions(+), 29 deletions(-)
Title: Hierarchical Model of Species Communities
Description: Hierarchical Modelling of Species Communities (HMSC) is
a model-based approach for analyzing community ecological data.
This package implements it in the Bayesian framework with Gibbs
Markov chain Monte Carlo (MCMC) sampling (Tikhonov et al. (2020)
<doi:10.1111/2041-210X.13345>).
Author: Gleb Tikhonov [aut],
Otso Ovaskainen [aut, cre] (<https://orcid.org/0000-0001-9750-4421>),
Jari Oksanen [aut],
Melinda de Jonge [aut],
Oystein Opedal [aut],
Tad Dallas [aut]
Maintainer: Otso Ovaskainen <otso.ovaskainen@helsinki.fi>
Diff between Hmsc versions 3.0-9 dated 2020-10-29 and 3.0-11 dated 2021-02-24
DESCRIPTION | 10 - MD5 | 97 +++++++-------- NAMESPACE | 7 + R/Hmsc.R | 158 +++++++++++++++---------- R/HmscRandomLevel.R | 76 ++++++++---- R/alignPosterior.R | 2 R/computeDataParameters.R | 17 +- R/computePredictedValues.R | 8 + R/constructGradient.R | 2 R/constructKnots.R | 8 - R/createPartition.R | 2 R/plotBeta.R | 2 R/plotGamma.R | 2 R/plotGradient.R | 25 +++- R/predict.R | 14 +- R/predictLatentFactor.R | 10 - R/prepareGradient.R | 19 ++- R/sampleMcmc.R | 54 ++++++-- R/setPriors.Hmsc.R | 12 - R/setPriors.HmscRandomLevel.R | 16 +- R/updateBetaLambda.R | 2 R/updateEta.R | 15 +- R/updateGamma2.R | 82 +++++++++---- R/updateGammaEta.R | 187 +++++++++++++++++++++++------- R/updateLambdaPriors.R | 7 - R/updateLatentLoadingOrder.R |only R/updateZ.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary data/TD.rda |binary inst/NEWS.md | 54 ++++++++ inst/doc/vignette_1_univariate.pdf |binary inst/doc/vignette_2_multivariate_low.pdf |binary inst/doc/vignette_3_multivariate_high.pdf |binary inst/doc/vignette_4_spatial.pdf |binary inst/doc/vignette_5_performance.pdf |binary man/Hmsc.Rd | 4 man/HmscRandomLevel.Rd | 55 +++++--- man/TD.Rd | 6 man/plotGradient.Rd | 8 + man/prepareGradient.Rd | 7 - tests/Examples/Hmsc-Ex.Rout.save | 38 +++--- tests/testthat/test-WAIC.R | 2 tests/testthat/test-initialParameters.R | 22 +-- tests/testthat/test-sampling.R | 40 +++--- tests/testthat/test-setHmsc.R | 68 +++++----- tests/testthat/test-setPriors.R | 13 -- vignettes/makedata.R | 27 +--- vignettes/vignette_5_performance.Rmd | 43 ++++-- 50 files changed, 802 insertions(+), 423 deletions(-)
More information about flightplanning at CRAN
Permanent link
Title: Count Transformation Models
Description: Count transformation models featuring
parameters interpretable as discrete hazard ratios, odds ratios,
reverse-time discrete hazard ratios, or transformed expectations.
An appropriate data transformation for a count outcome and
regression coefficients are simultaneously estimated by maximising
the exact discrete log-likelihood using the computational framework
provided in package 'mlt', technical details are given in
Siegfried & Hothorn (2020) <DOI:10.1111/2041-210X.13383>.
Author: Sandra Siegfried [aut] (<https://orcid.org/0000-0002-7312-1001>),
Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between cotram versions 0.2-0 dated 2020-03-30 and 0.2-1 dated 2021-02-24
DESCRIPTION | 15 ++++++++------- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 3 ++- R/models.R | 1 + R/predict.R | 17 ++++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 16 ++++++++++------ inst/NEWS.Rd | 8 ++++++++ inst/doc/cotram.R | 21 +++++++++++++++++---- inst/doc/cotram.Rnw | 25 +++++++++++++++++++++---- inst/doc/cotram.pdf |binary man/cotram-methods.Rd | 5 +++-- tests/confband-Ex.R | 2 +- tests/predict-Ex.R | 40 ++++++++++++++++++++++++++++++++++++++++ vignettes/cotram.Rnw | 25 +++++++++++++++++++++---- 16 files changed, 163 insertions(+), 45 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.2-2 dated 2021-02-12 and 1.2-3 dated 2021-02-24
mlt-1.2-2/mlt/tests/Examples |only mlt-1.2-3/mlt/DESCRIPTION | 8 +- mlt-1.2-3/mlt/MD5 | 15 ++-- mlt-1.2-3/mlt/R/dpq_etc.R | 4 - mlt-1.2-3/mlt/build/partial.rdb |binary mlt-1.2-3/mlt/inst/NEWS.Rd | 12 ++- mlt-1.2-3/mlt/man/R.Rd | 68 +++++++++++++++++++ mlt-1.2-3/mlt/man/mlt-package.Rd | 13 ++- mlt-1.2-3/mlt/man/predict.Rd | 135 ++++++++++++++++++++++++++++++++++++++- 9 files changed, 231 insertions(+), 24 deletions(-)
Title: Selected ISO Codes
Description: ISO language, territory, currency, script and character codes.
Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217
currency codes, ISO 15924 script codes, and the ISO 8859 character codes
as well as the UN M.49 area codes.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between ISOcodes versions 2020.12.04 dated 2020-12-04 and 2021.02.24 dated 2021-02-24
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- data/ISO_15924.rda |binary data/ISO_3166_1.rda |binary data/ISO_3166_2.rda |binary data/ISO_3166_3.rda |binary data/ISO_4217.rda |binary data/ISO_4217_Historic.rda |binary data/ISO_639_2.rda |binary data/ISO_639_3.rda |binary data/ISO_639_3_Retirements.rda |binary data/ISO_639_5.rda |binary data/UN_M.49_Countries.rda |binary data/UN_M.49_Regions.rda |binary 14 files changed, 16 insertions(+), 16 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-22 0.2.0.1
2020-09-14 0.2.0
2020-05-16 0.1.3
Title: Group Animal Relocation Data by Spatial and Temporal
Relationship
Description: Detects spatial and temporal groups in GPS relocations
(Robitaille et al. (2020) <doi:10.1111/2041-210X.13215>).
It can be used to convert GPS relocations to
gambit-of-the-group format to build proximity-based social networks
In addition, the randomizations function provides data-stream
randomization methods suitable for GPS data.
Author: Alec L. Robitaille [aut, cre] (<https://orcid.org/0000-0002-4706-1762>),
Quinn Webber [aut] (<https://orcid.org/0000-0002-0434-9360>),
Eric Vander Wal [aut] (<https://orcid.org/0000-0002-8534-4317>)
Maintainer: Alec L. Robitaille <robit.alec@gmail.com>
Diff between spatsoc versions 0.1.15 dated 2020-10-21 and 0.1.16 dated 2021-02-24
DESCRIPTION | 6 MD5 | 76 ++--- NEWS.md | 9 R/build_lines.R | 47 ++- R/build_polys.R | 70 +++- R/edge_dist.R | 77 +++-- R/extdata.R | 2 R/get_gbi.R | 2 R/group_lines.R | 11 R/group_polys.R | 11 build/vignette.rds |binary inst/doc/faq.Rmd | 14 inst/doc/faq.html | 14 inst/doc/intro-spatsoc.R | 8 inst/doc/intro-spatsoc.Rmd | 8 inst/doc/intro-spatsoc.html | 70 ++-- inst/doc/using-edge-and-dyad.html | 564 ++++++++++---------------------------- inst/doc/using-in-sna.R | 4 inst/doc/using-in-sna.Rmd | 4 inst/doc/using-in-sna.html | 4 man/DT.Rd | 2 man/build_lines.Rd | 46 ++- man/build_polys.Rd | 64 +++- man/edge_dist.Rd | 6 man/get_gbi.Rd | 2 man/group_lines.Rd | 15 - man/group_polys.Rd | 15 - tests/testthat/test-build-lines.R | 2 tests/testthat/test-build-polys.R | 2 tests/testthat/test-edge-dist.R | 20 - tests/testthat/test-edge-nn.R | 15 - tests/testthat/test-gbi.R | 2 tests/testthat/test-group-lines.R | 14 tests/testthat/test-group-polys.R | 2 tests/testthat/test-pts.R | 19 - tests/testthat/test-random.R | 65 ++-- vignettes/faq.Rmd | 14 vignettes/intro-spatsoc.Rmd | 8 vignettes/using-in-sna.Rmd | 4 39 files changed, 630 insertions(+), 688 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <sebastian.calonico@columbia.edu>, Matias D. Cattaneo <cattaneo@princeton.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@princeton.edu>
Maintainer: Sebastian Calonico <sebastian.calonico@columbia.edu>
Diff between rdrobust versions 0.99.9 dated 2020-08-26 and 1.0.1 dated 2021-02-24
DESCRIPTION | 10 ++--- MD5 | 18 ++++----- NAMESPACE | 1 R/functions.R | 9 +++- R/rdbwselect.R | 71 ++++++++++++++++++++++++------------- R/rdplot.R | 91 +++++++++++++++++++++++++++++++----------------- R/rdrobust.R | 35 +++++++++++------- man/rdbwselect.Rd | 3 + man/rdplot.Rd | 14 ++++++- man/rdrobust-package.Rd | 4 +- 10 files changed, 166 insertions(+), 90 deletions(-)
Title: 'Rcpp' Bindings for the 'simdjson' Header-Only Library for
'JSON' Parsing
Description: The 'JSON' format is ubiquitous for data interchange, and the
'simdjson' library written by Daniel Lemire (and many contributors) provides
a high-performance parser for these files which by relying on parallel 'SIMD'
instruction manages to parse these files as faster than disk speed. See the
<arXiv:1902.08318> paper for more details about 'simdjson'. This package
parses 'JSON' from string, file, or remote URLs under a variety of settings.
Author: Dirk Eddelbuettel, Brendan Knapp
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSimdJson versions 0.1.4 dated 2021-02-12 and 0.1.5 dated 2021-02-24
ChangeLog | 21 ++++++++++++++- DESCRIPTION | 8 ++--- MD5 | 20 +++++++------- R/utils.R | 11 ++++--- R/validateJSON.R | 2 - build/partial.rdb |binary inst/NEWS.Rd | 8 +++++ inst/include/RcppSimdJson/deserialize.hpp | 28 ++++++++++---------- inst/include/RcppSimdJson/deserialize/dataframe.hpp | 4 +- inst/include/RcppSimdJson/deserialize/vector.hpp | 4 +- inst/include/RcppSimdJson/utils.hpp | 2 - 11 files changed, 68 insertions(+), 40 deletions(-)
Title: Degrees of Freedom Adjustment for Robust Standard Errors
Description: Computes small-sample degrees of freedom adjustment for
heteroskedasticity robust standard errors, and for clustered standard errors
in linear regression. See Imbens and Kolesár (2016)
<doi:10.1162/REST_a_00552> for a discussion of these adjustments.
Author: Michal Kolesár [aut, cre] (<https://orcid.org/0000-0002-2482-7796>)
Maintainer: Michal Kolesár <kolesarmi@googlemail.com>
Diff between dfadjust versions 1.0.1 dated 2019-12-16 and 1.0.2 dated 2021-02-24
DESCRIPTION | 8 +-- MD5 | 24 +++++------ NEWS.md | 9 +++- R/ols.R | 24 +++++++---- build/partial.rdb |only build/vignette.rds |binary inst/doc/dfadjust.Rmd | 21 +++++---- inst/doc/dfadjust.pdf |binary man/dfadjustSE.Rd | 7 +-- tests/testthat/test-hc2-check.R | 6 +- tests/testthat/test_clustervar.R |only vignettes/auto/library.el | 2 vignettes/dfadjust.Rmd | 21 +++++---- vignettes/library.bib | 85 ++++++++++++++++++++------------------- 14 files changed, 121 insertions(+), 86 deletions(-)
Title: Aligned Rank Transform
Description: The Aligned Rank Transform for nonparametric
factorial ANOVAs as described by J. O. Wobbrock,
L. Findlater, D. Gergle, & J. J. Higgins, "The Aligned
Rank Transform for nonparametric factorial analyses
using only ANOVA procedures", CHI 2011 <DOI:10.1145/1978942.1978963>.
Author: Matthew Kay [aut, cre],
Lisa A. Elkin [aut],
James J. Higgins [aut],
Jacob O. Wobbrock [aut]
Maintainer: Matthew Kay <mjskay@northwestern.edu>
Diff between ARTool versions 0.10.8 dated 2020-10-31 and 0.11.0 dated 2021-02-24
DESCRIPTION | 22 - MD5 | 89 ++-- NAMESPACE | 7 NEWS.md | 179 ++++---- R/anova.art.R | 414 ++++++++++---------- R/art.R | 581 ++++++++++++++-------------- R/art.con.R |only R/art.con.internal.R |only R/artlm.R | 168 ++++---- R/artlm.con.R |only R/data.R | 504 +++++++++++++----------- R/flat.anova.R | 222 +++++----- R/global.variables.R | 18 R/internal.R | 367 +++++++++-------- R/release.questions.R | 20 README.md | 30 + build/vignette.rds |binary data/ElkinAB.RData |only data/ElkinABC.RData |only inst/CITATION | 81 ++- inst/doc/art-contrasts.R | 159 ++++--- inst/doc/art-contrasts.Rmd | 661 +++++++++++++++++--------------- inst/doc/art-contrasts.html | 611 ++++++++++------------------- inst/doc/art-effect-size.R | 2 inst/doc/art-effect-size.Rmd | 358 ++++++++--------- inst/doc/art-effect-size.html | 352 +++-------------- man/ElkinAB.Rd |only man/ElkinABC.Rd |only man/Higgins1990Table1.Rd | 86 ++-- man/Higgins1990Table1.art.Rd | 68 +-- man/Higgins1990Table5.Rd | 102 ++-- man/Higgins1990Table5.art.Rd | 68 +-- man/HigginsABC.Rd | 76 +-- man/HigginsABC.art.Rd | 86 ++-- man/InteractionTestData.Rd | 35 - man/anova.art.Rd | 206 ++++----- man/art.Rd | 318 ++++++++------- man/art.con.Rd |only man/artlm.Rd | 114 ++--- man/artlm.con.Rd |only man/summary.art.Rd | 82 +-- tests/testthat.R | 8 tests/testthat/test.anova.art.R | 180 ++++---- tests/testthat/test.art.R | 564 +++++++++++++-------------- tests/testthat/test.art.con.R |only tests/testthat/test.artlm.R | 96 ++-- tests/testthat/test.artlm.con.R |only tests/testthat/test.parse.art.formula.R | 192 ++++----- tests/testthat/test.summary.art.R | 38 - vignettes/art-contrasts.Rmd | 661 +++++++++++++++++--------------- vignettes/art-effect-size.Rmd | 358 ++++++++--------- 51 files changed, 4045 insertions(+), 4138 deletions(-)
Title: Accurate Estimation of Influenza Epidemics using Google Search
Data
Description: Augmented Regression with General Online data (ARGO) for accurate estimation of influenza epidemics in United States on national level, regional level and state level. It replicates the method introduced in paper Yang, S., Santillana, M. and Kou, S.C. (2015) <doi:10.1073/pnas.1515373112>; Ning, S., Yang, S. and Kou, S.C. (2019) <doi:10.1038/s41598-019-41559-6>; Yang, S., Ning, S. and Kou, S.C. (2021) <doi:10.1038/s41598-021-83084-5>.
Author: Shaoyang Ning, Shihao Yang, S. C. Kou
Maintainer: Shihao Yang <shihao.yang@isye.gatech.edu>
Diff between argo versions 2.0.2 dated 2020-04-25 and 3.0.1 dated 2021-02-24
DESCRIPTION | 12 - MD5 | 35 +-- NAMESPACE | 1 R/constructor.R | 2 R/dataparsing.R | 22 - R/main.R | 391 +++++++++++++++++++++++++++++++++++ R/plot.R | 3 R/summary.R | 6 README | 2 man/argo.Rd | 15 - man/argo2_main.Rd | 9 man/argox_main.Rd |only man/boot_re.Rd | 15 + man/bootstrap_relative_efficiency.Rd | 14 - man/load_data.Rd | 17 - man/load_reg_data.Rd | 9 man/parse_gt_weekly.Rd | 2 man/parse_unrevised_ili.Rd | 2 man/summary_argo.Rd | 11 19 files changed, 500 insertions(+), 68 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-18 1.0.2
2017-12-08 1.0.1
2017-11-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-10 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-07 3.1.14
2020-01-29 3.1.13
2018-02-15 3.1.7
2018-01-04 3.1.6
2017-11-07 3.1.5
2017-09-19 3.1.3
2017-09-16 3.1.2
2016-04-09 3.0.5
2016-04-06 3.0.4
2016-03-29 3.0.2
2016-02-26 2.0.4.1
2014-06-01 2.0.4
2014-05-27 2.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-14 0.5.3
2017-02-21 0.5.2
2015-11-20 0.5
2015-02-11 0.4
2014-12-16 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-14 1.0.2.1
2017-11-17 1.0.2
2017-03-31 1.0.1
2017-02-23 1.0.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-12 0.8.0
2019-02-19 0.7.1
2019-01-08 0.7.0
2018-10-08 0.6.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-16 0.1.18.4
2019-01-05 0.1.18.3.1
2017-02-13 0.1.18.3
2016-10-22 0.1.18.2
2015-01-03 0.1.17.45
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-12 0.2.5
Title: Moment-Free Estimation of Sharpe Ratios
Description: An efficient moment-free estimator of the Sharpe ratio, or signal-to-noise ratio, for heavy-tailed data (see <arXiv:1505.01333>).
Author: Damien Challet
Maintainer: Damien Challet <damien.challet@gmail.com>
Diff between sharpeRratio versions 1.4.1 dated 2020-05-15 and 1.4.2 dated 2021-02-24
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 9 +++++++++ src/num_records.cpp | 11 ++++++----- 4 files changed, 22 insertions(+), 12 deletions(-)
Title: Evolutionary Transcriptomics
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) <doi:10.1101/051565>).
Author: Hajk-Georg Drost [aut, cre] (<https://orcid.org/0000-0002-1567-306X>)
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
Diff between myTAI versions 0.9.2 dated 2020-01-10 and 0.9.3 dated 2021-02-24
myTAI-0.9.2/myTAI/tests/testthat/test-taxid.R |only myTAI-0.9.3/myTAI/DESCRIPTION | 23 myTAI-0.9.3/myTAI/MD5 | 75 - myTAI-0.9.3/myTAI/NEWS.md | 17 myTAI-0.9.3/myTAI/R/MatchMap.R | 2 myTAI-0.9.3/myTAI/R/PlotSignature.R | 2 myTAI-0.9.3/myTAI/R/is.ExpressionSet.R | 2 myTAI-0.9.3/myTAI/R/myTAI-package.R |only myTAI-0.9.3/myTAI/R/pStrata.R | 2 myTAI-0.9.3/myTAI/R/tf.R | 4 myTAI-0.9.3/myTAI/README.md | 57 myTAI-0.9.3/myTAI/build/vignette.rds |binary myTAI-0.9.3/myTAI/inst/CITATION | 8 myTAI-0.9.3/myTAI/inst/doc/Advanced.html | 240 +-- myTAI-0.9.3/myTAI/inst/doc/Enrichment.Rmd | 2 myTAI-0.9.3/myTAI/inst/doc/Enrichment.html | 256 +-- myTAI-0.9.3/myTAI/inst/doc/Expression.Rmd | 4 myTAI-0.9.3/myTAI/inst/doc/Expression.html | 646 ++++----- myTAI-0.9.3/myTAI/inst/doc/Intermediate.R | 282 +-- myTAI-0.9.3/myTAI/inst/doc/Intermediate.Rmd | 62 myTAI-0.9.3/myTAI/inst/doc/Intermediate.html | 478 +++--- myTAI-0.9.3/myTAI/inst/doc/Introduction.R | 310 ++-- myTAI-0.9.3/myTAI/inst/doc/Introduction.Rmd | 46 myTAI-0.9.3/myTAI/inst/doc/Introduction.html | 711 +++++----- myTAI-0.9.3/myTAI/inst/doc/Taxonomy.R | 14 myTAI-0.9.3/myTAI/inst/doc/Taxonomy.Rmd | 33 myTAI-0.9.3/myTAI/inst/doc/Taxonomy.html | 128 + myTAI-0.9.3/myTAI/man/PlotSignature.Rd | 2 myTAI-0.9.3/myTAI/man/tf.Rd | 4 myTAI-0.9.3/myTAI/src/code.cpp |only myTAI-0.9.3/myTAI/src/myTAI_init.c | 5 myTAI-0.9.3/myTAI/src/rcpp_funcs.cpp | 9 myTAI-0.9.3/myTAI/tests/testthat/test-EarlyConservationTest.R | 56 myTAI-0.9.3/myTAI/tests/testthat/test-REMatrix.R | 4 myTAI-0.9.3/myTAI/tests/testthat/test-ReductiveHourglassTest.R | 79 - myTAI-0.9.3/myTAI/vignettes/Enrichment.Rmd | 2 myTAI-0.9.3/myTAI/vignettes/Expression.Rmd | 4 myTAI-0.9.3/myTAI/vignettes/Intermediate.Rmd | 62 myTAI-0.9.3/myTAI/vignettes/Introduction.Rmd | 46 myTAI-0.9.3/myTAI/vignettes/Taxonomy.Rmd | 33 40 files changed, 1924 insertions(+), 1786 deletions(-)
Title: Automated Boosted Regression Tree Modelling and Mapping Suite
Description: Automates delta log-normal boosted regression tree abundance
prediction. Loops through parameters provided (LR (learning rate), TC (tree
complexity), BF (bag fraction)), chooses best, simplifies, & generates line,
dot & bar plots, & outputs these & predictions & a report, makes predicted
abundance maps, and Unrepresentativeness surfaces.
Package core built around 'gbm' (gradient boosting machine) functions in
'dismo' (Hijmans, Phillips, Leathwick & Jane Elith, 2020 & ongoing), itself
built around 'gbm' (Greenwell, Boehmke, Cunningham & Metcalfe, 2020 &
ongoing, originally by Ridgeway). Indebted to Elith/Leathwick/Hastie 2008
'Working Guide' <doi:10.1111/j.1365-2656.2008.01390.x>; workflow follows
Appendix S3. See <http://www.simondedman.com/> for published guides and
papers using this package.
Author: Simon Dedman [aut, cre],
Hans Gerritsen [aut]
Maintainer: Simon Dedman <simondedman@gmail.com>
Diff between gbm.auto versions 1.4.0 dated 2021-02-15 and 1.4.1 dated 2021-02-24
DESCRIPTION | 6 MD5 | 24 +-- NEWS.md | 3 R/gbm.auto.R | 3 R/gbm.basemap.R | 3 R/gbm.bfcheck.R | 5 R/gbm.cons.R | 391 ++++++++++++++++++++++++++--------------------------- R/gbm.loop.R | 3 man/gbm.auto.Rd | 2 man/gbm.basemap.Rd | 2 man/gbm.bfcheck.Rd | 2 man/gbm.cons.Rd | 3 man/gbm.loop.Rd | 2 13 files changed, 223 insertions(+), 226 deletions(-)
Title: Calculate Ecological Information and Diatom Based Indices
Description: Calculates ecological information and biotic indices for diatoms in a sample.
It includes number/shape of chloroplasts diversity indices, size classes, ecological guilds, and multiple biotic indices.
It outputs both a dataframe with all the results and plots of all the obtained data in a defined output folder.
Sample data was taken from Nicolosi Gelis, Cochero & Gómez (2020, <doi:10.1016/j.ecolind.2019.105951>).
The package uses the 'Diat.Barcode' database to calculate morphological and ecological information by Rimet & Couchez (2012, <doi:10.1051/kmae/2012018>),
and calculates the DES index by Descy (1979, <http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=PASCAL8060205402>),
the EPID index by Dell'Uomo (1996, ISBN: 3950009002),
the IDAP index by Prygiel & Coste (1993, <doi:10.1007/BF00028033>),
the ID-CH index by Hürlimann & Niederhauser (2007, <https://www.bafu.admin.ch/bafu/fr/home/themes/eaux/publications/publications-eaux/methodes-analyse-appreciation-cours-eau-diatomees.html>),
the IDP index by Gómez & Licursi (2001, <doi:10.1023/A:1011415209445>),
the ILM index by Leclercq & Maquet (1987, <http://www.vliz.be/imisdocs/publications/286641.pdf>),
the IPS index by Coste (1982, <https://www.oieau.org/eaudoc/notice/ETUDE-DES-METHODES-BIOLOGIQUES-DAPPRECIATION-QUANTITATIVE-DE-LA-QUALITE-DES-EAUX>),
the LOBO index by Lobo, Callegaro, & Bender (2002, ISBN:9788585869908),
the SLA by Sládeček (1986, <doi:10.1002/aheh.19860140519>),
the TDI index by Kelly, & Whitton (1995, <doi:10.1007/BF00003802>),
and the SPEAR(herbicide) index by Wood, Mitrovic, Lim, Warne, Dunlop, & Kefford (2019, <doi:10.1016/j.ecolind.2018.12.035>).
Author: María Mercedes Nicolosi Gelis [aut]
(<https://orcid.org/0000-0001-6324-7930>),
María Belén Sathicq [aut] (<https://orcid.org/0000-0002-3534-8950>),
Joaquín Cochero [cre] (<https://orcid.org/0000-0003-3957-6819>)
Maintainer: Joaquín Cochero <jcochero@ilpla.edu.ar>
Diff between diathor versions 0.0.1 dated 2020-11-26 and 0.0.4 dated 2021-02-24
DESCRIPTION | 9 - MD5 | 42 ++--- NAMESPACE | 4 R/data.R | 14 - R/diat_findAcronyms.R | 31 ++- R/diat_guilds.R | 121 +++++++-------- R/diat_loadData.R | 56 +++++-- R/diat_morpho.R | 155 +++++++------------ R/diat_size.R | 101 +++++-------- R/diat_spear.R | 31 ++- R/diat_vandam.R | 380 +++++++++++++++++++++---------------------------- R/diathorAll.R | 13 - README.md | 124 +++++++++++++++ data/acronyms.rda |binary data/spear.rda |binary man/dbc_offline.Rd | 2 man/diat_sampleData.Rd | 2 man/idap.Rd | 2 man/idp.Rd | 2 man/sla.Rd | 2 man/spear.Rd | 2 man/tdi.Rd | 2 22 files changed, 572 insertions(+), 523 deletions(-)