Title: 'KorAP' Web Service Client Package
Description: A client package that makes the 'KorAP' web service API accessible from R.
The corpus analysis platform 'KorAP' has been developed as a scientific tool to make
potentially large, stratified and multiply annotated corpora, such as the 'German Reference Corpus DeReKo'
or the 'Corpus of the Contemporary Romanian Language CoRoLa', accessible for linguists to let them verify
hypotheses and to find interesting patterns in real language use.
The 'RKorAPClient' package provides access to 'KorAP' and the corpora behind it for user-created R code,
as a programmatic alternative to the 'KorAP' web user-interface.
You can learn more about 'KorAP' and use it directly on 'DeReKo' at <https://korap.ids-mannheim.de/>.
Author: Marc Kupietz [aut, cre],
Nils Diewald [ctb],
Leibniz Institute for the German Language [cph, fnd]
Maintainer: Marc Kupietz <kupietz@ids-mannheim.de>
Diff between RKorAPClient versions 0.5.9 dated 2020-06-07 and 0.6.1 dated 2021-03-12
RKorAPClient-0.5.9/RKorAPClient/R/RKorAPClient.R |only RKorAPClient-0.5.9/RKorAPClient/demo/data/cache/map.rds |only RKorAPClient-0.5.9/RKorAPClient/man/RKorAPClient.Rd |only RKorAPClient-0.5.9/RKorAPClient/man/ci.Rd |only RKorAPClient-0.5.9/RKorAPClient/man/geom_freq_by_year_ci.Rd |only RKorAPClient-0.5.9/RKorAPClient/man/ggplotly.Rd |only RKorAPClient-0.5.9/RKorAPClient/man/hc_freq_by_year_ci.Rd |only RKorAPClient-0.5.9/RKorAPClient/man/ipm.Rd |only RKorAPClient-0.5.9/RKorAPClient/man/percent.Rd |only RKorAPClient-0.5.9/RKorAPClient/man/queryStringToLabel.Rd |only RKorAPClient-0.6.1/RKorAPClient/DESCRIPTION | 22 + RKorAPClient-0.6.1/RKorAPClient/MD5 | 64 ++-- RKorAPClient-0.6.1/RKorAPClient/NAMESPACE | 14 - RKorAPClient-0.6.1/RKorAPClient/NEWS.md | 15 + RKorAPClient-0.6.1/RKorAPClient/R/KorAPQuery.R | 130 +++++++++- RKorAPClient-0.6.1/RKorAPClient/R/RKorAPClient-package.R |only RKorAPClient-0.6.1/RKorAPClient/R/association-scores.R |only RKorAPClient-0.6.1/RKorAPClient/R/ci.R | 2 RKorAPClient-0.6.1/RKorAPClient/R/highcharter-helper.R | 56 +++- RKorAPClient-0.6.1/RKorAPClient/R/misc.R | 75 +---- RKorAPClient-0.6.1/RKorAPClient/demo/00Index | 1 RKorAPClient-0.6.1/RKorAPClient/demo/alternativesOverTime.R | 5 RKorAPClient-0.6.1/RKorAPClient/demo/conditionsOverTime.R | 4 RKorAPClient-0.6.1/RKorAPClient/demo/data/cache/map-v2.rds |binary RKorAPClient-0.6.1/RKorAPClient/demo/frequenciesOverTime.R | 4 RKorAPClient-0.6.1/RKorAPClient/demo/highcharter-example.R | 1 RKorAPClient-0.6.1/RKorAPClient/demo/regional.R | 12 RKorAPClient-0.6.1/RKorAPClient/demo/shiny-frequency-curves.R |only RKorAPClient-0.6.1/RKorAPClient/inst |only RKorAPClient-0.6.1/RKorAPClient/man/KorAPQuery-class.Rd | 67 ++++- RKorAPClient-0.6.1/RKorAPClient/man/RKorAPClient-package.Rd |only RKorAPClient-0.6.1/RKorAPClient/man/association-score-functions.Rd |only RKorAPClient-0.6.1/RKorAPClient/man/corpusQuery-KorAPConnection-method.Rd | 4 RKorAPClient-0.6.1/RKorAPClient/man/figures/logo.png |only RKorAPClient-0.6.1/RKorAPClient/man/highcharter-helpers.Rd |only RKorAPClient-0.6.1/RKorAPClient/man/misc-functions.Rd |only RKorAPClient-0.6.1/RKorAPClient/man/reexports.Rd | 4 RKorAPClient-0.6.1/RKorAPClient/tests/testthat/test-KorAPConnection.R | 2 RKorAPClient-0.6.1/RKorAPClient/tests/testthat/test-association-score-functions.R |only RKorAPClient-0.6.1/RKorAPClient/tests/testthat/test-corpusQuery.R | 11 RKorAPClient-0.6.1/RKorAPClient/tests/testthat/test-demos.R | 28 -- RKorAPClient-0.6.1/RKorAPClient/tests/testthat/test-misc.R |only 42 files changed, 357 insertions(+), 164 deletions(-)
Title: Estimation and Prediction Methods for High-Dimensional Mixed
Frequency Time Series Data
Description: The 'midasml' estimation and prediction methods for high dimensional time series regression models under mixed data sampling data structures using structured-sparsity penalties and orthogonal polynomials. For more information on the 'midasml' approach see Babii, Ghysels, and Striaukas (2021, JBES forthcoming) <doi:10.1080/07350015.2021.1899933>. Functions that compute MIDAS data structures were inspired by MIDAS 'Matlab' toolbox (v2.3) written by Eric Ghysels.
Author: Jonas Striaukas [aut, cre]
Maintainer: Jonas Striaukas <jonas.striaukas@gmail.com>
Diff between midasml versions 0.0.4 dated 2020-07-05 and 0.0.6 dated 2021-03-12
midasml-0.0.4/midasml/README.md |only midasml-0.0.6/midasml/DESCRIPTION | 8 ++-- midasml-0.0.6/midasml/MD5 | 39 ++++++++++------------ midasml-0.0.6/midasml/R/data.R | 6 +++ midasml-0.0.6/midasml/R/fit_sgl.R | 8 ++-- midasml-0.0.6/midasml/R/help_functions.R | 4 +- midasml-0.0.6/midasml/R/midas_functions.R | 10 +++-- midasml-0.0.6/midasml/R/midasml_functions.R | 2 + midasml-0.0.6/midasml/build/partial.rdb |binary midasml-0.0.6/midasml/man/apply_transform.Rd | 4 +- midasml-0.0.6/midasml/man/macro_midasml.Rd | 2 + midasml-0.0.6/midasml/man/market_ret.Rd | 2 + midasml-0.0.6/midasml/man/midas_dl.Rd | 2 - midasml-0.0.6/midasml/man/midas_forecast.Rd | 2 - midasml-0.0.6/midasml/man/panel_sgl.Rd | 2 - midasml-0.0.6/midasml/man/plot_weights.Rd | 3 + midasml-0.0.6/midasml/man/predict.panel_sgl.Rd | 2 - midasml-0.0.6/midasml/man/qtarget.sort_midasml.Rd | 2 + midasml-0.0.6/midasml/man/reg_sgl.Rd | 2 - midasml-0.0.6/midasml/man/sgl_fit.Rd | 2 + midasml-0.0.6/midasml/man/us_rgdp.Rd | 2 + 21 files changed, 64 insertions(+), 40 deletions(-)
Title: MCMC Generalised Linear Mixed Models
Description: Fits Multivariate Generalised Linear Mixed Models (and related models) using Markov chain Monte Carlo techniques.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>
Diff between MCMCglmm versions 2.31 dated 2021-03-09 and 2.32 dated 2021-03-12
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/MCMCglmm.R | 18 +++++++++++++++--- R/predict.MCMCglmm.R | 2 +- R/simulate.MCMCglmm.R | 2 +- inst/doc/CourseNotes.pdf |binary inst/doc/Overview.pdf |binary src/MCMCglmm.cc | 14 ++++++++------ vignettes/Figures/TEST.R | 6 ++++-- 9 files changed, 41 insertions(+), 25 deletions(-)
Title: Clustering with Matrix Gaussian and Matrix Transformation
Mixture Models
Description: Provides matrix Gaussian mixture models, matrix transformation mixture models and their model-based clustering results. The parsimonious models of the mean matrices and variance covariance matrices are implemented with a total of 196 variations.
Author: Xuwen Zhu [aut, cre],
Volodymyr Melnykov [aut],
Shuchismita Sarkar [ctb],
Michael Hutt [ctb, cph],
Stephen Moshier [ctb, cph],
Rouben Rostamian [ctb, cph],
Carl Edward Rasmussen [ctb, cph],
Dianne Cook [ctb, cph]
Maintainer: Xuwen Zhu <xzhu20@cba.ua.edu>
Diff between MatTransMix versions 0.1.12 dated 2020-09-11 and 0.1.13 dated 2021-03-12
MatTransMix-0.1.12/MatTransMix/demo/EMdemoIris.R |only MatTransMix-0.1.13/MatTransMix/DESCRIPTION | 8 +-- MatTransMix-0.1.13/MatTransMix/MD5 | 28 +++++++------ MatTransMix-0.1.13/MatTransMix/NAMESPACE | 4 + MatTransMix-0.1.13/MatTransMix/NEWS | 4 + MatTransMix-0.1.13/MatTransMix/R/libMatTransFull.R | 42 ++++++++++++++++---- MatTransMix-0.1.13/MatTransMix/R/plot.R |only MatTransMix-0.1.13/MatTransMix/demo/00Index | 5 +- MatTransMix-0.1.13/MatTransMix/demo/EMdemoCrime1.R | 3 - MatTransMix-0.1.13/MatTransMix/demo/EMdemoIMDb3.R | 2 MatTransMix-0.1.13/MatTransMix/demo/EMdemoIris1.R |only MatTransMix-0.1.13/MatTransMix/demo/EMdemoIris2.R |only MatTransMix-0.1.13/MatTransMix/demo/EMdemoIris3.R |only MatTransMix-0.1.13/MatTransMix/man/MatTrans.EM.Rd | 2 MatTransMix-0.1.13/MatTransMix/man/MatTrans.plot.Rd |only MatTransMix-0.1.13/MatTransMix/src/MatTransMix.h | 4 - MatTransMix-0.1.13/MatTransMix/src/libFull.c | 41 ++++++++++--------- MatTransMix-0.1.13/MatTransMix/src/runFull.c | 2 18 files changed, 95 insertions(+), 50 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools that the author (Jacob) has written
for the purpose of more efficiently understanding and sharing the results of
(primarily) regression analyses. There are also a number of miscellaneous
functions for statistical and programming purposes. Just about everything
supports models from the survey package.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <jacob.long@sc.edu>
Diff between jtools versions 2.1.2 dated 2021-01-07 and 2.1.3 dated 2021-03-12
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/gscale.R | 4 ++-- build/partial.rdb |binary data/movies.rda |binary inst/doc/effect_plot.html | 12 ++++++------ inst/doc/summ.html | 4 ++-- inst/doc/svycor.html | 8 ++++---- man/gscale.Rd | 4 ++-- 10 files changed, 32 insertions(+), 28 deletions(-)
Title: Format R Code Automatically
Description: Provides a function tidy_source() to format R source code. Spaces
and indent will be added to the code automatically, and comments will be
preserved under certain conditions, so that R code will be more
human-readable and tidy. There is also a Shiny app as a user interface in
this package (see tidy_app()).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Eugene Ha [ctb],
Kohske Takahashi [ctb],
Ed Lee [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between formatR versions 1.7 dated 2019-06-11 and 1.8 dated 2021-03-12
DESCRIPTION | 10 MD5 | 34 +- NEWS | 10 R/eval.R | 2 R/tidy.R | 9 R/utils.R | 12 README.md | 6 build/vignette.rds |binary inst/doc/formatR.R | 8 inst/doc/formatR.Rmd | 20 - inst/doc/formatR.html | 597 +++++++++++++++-------------------------------- inst/shiny/DESCRIPTION | 2 inst/shiny/ui.R | 2 man/tidy_eval.Rd | 10 man/tidy_source.Rd | 27 +- man/usage.Rd | 10 tests/testit/test-tidy.R | 4 vignettes/formatR.Rmd | 20 - 18 files changed, 312 insertions(+), 471 deletions(-)
Title: An Implementation of the 'Congruent Matching Cells' Method
Description: An open-source implementation of the 'Congruent Matching Cells'
method for cartridge case identification as proposed by Song (2013) <https://tsapps.nist.gov/publication/get_pdf.cfm?pub_id=911193> as well
as an extension of the method proposed by Tong et al. (2015) <doi:10.6028/jres.120.008>.
Provides a wide range of pre, inter, and post-processing options when
working with cartridge case scan data and their associated comparisons. See
the cmcR package website for more details and examples.
Author: Joe Zemmels [aut, cre],
Heike Hofmann [aut],
Susan VanderPlas [aut]
Maintainer: Joe Zemmels <jzemmels@iastate.edu>
Diff between cmcR versions 0.1.3 dated 2020-12-16 and 0.1.4 dated 2021-03-12
DESCRIPTION | 6 MD5 | 8 - R/diagnosticTools.R | 14 -- inst/doc/decisionRuleDescription.html | 238 ---------------------------------- man/cmcPlot.Rd | 4 5 files changed, 21 insertions(+), 249 deletions(-)
Title: Unicode Text Processing
Description: Process and print 'UTF-8' encoded international
text (Unicode). Input, validate, normalize, encode, format, and
display.
Author: Patrick O. Perry [aut, cph],
Kirill Müller [cre],
Unicode, Inc. [cph, dtc] (Unicode Character Database)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between utf8 versions 1.1.4 dated 2018-05-24 and 1.2.1 dated 2021-03-12
utf8-1.1.4/utf8/NEWS |only utf8-1.2.1/utf8/DESCRIPTION | 44 utf8-1.2.1/utf8/MD5 | 80 utf8-1.2.1/utf8/R/coerce.R | 284 +-- utf8-1.2.1/utf8/R/output.R | 68 utf8-1.2.1/utf8/R/utf8.R | 58 utf8-1.2.1/utf8/R/utf8_encode.R | 33 utf8-1.2.1/utf8/R/utf8_format.R | 103 - utf8-1.2.1/utf8/R/utf8_print.R | 620 +++--- utf8-1.2.1/utf8/R/util.R | 36 utf8-1.2.1/utf8/README.md | 192 -- utf8-1.2.1/utf8/build/vignette.rds |binary utf8-1.2.1/utf8/inst/doc/utf8.Rmd | 2 utf8-1.2.1/utf8/inst/doc/utf8.html | 364 +-- utf8-1.2.1/utf8/src/utf8lite/src/char.c | 90 utf8-1.2.1/utf8/src/utf8lite/src/graphscan.c | 100 - utf8-1.2.1/utf8/src/utf8lite/src/private/casefold.h | 93 utf8-1.2.1/utf8/src/utf8lite/src/private/charwidth.h | 685 +++++-- utf8-1.2.1/utf8/src/utf8lite/src/private/combining.h | 287 ++- utf8-1.2.1/utf8/src/utf8lite/src/private/compose.h | 1584 ++++++++--------- utf8-1.2.1/utf8/src/utf8lite/src/private/decompose.h | 1087 ++++++----- utf8-1.2.1/utf8/src/utf8lite/src/private/emojiprop.h |only utf8-1.2.1/utf8/src/utf8lite/src/private/graphbreak.h | 1365 ++++++++------ utf8-1.2.1/utf8/src/utf8lite/src/private/wordbreak.h |only utf8-1.2.1/utf8/src/utf8lite/src/textassign.c | 5 utf8-1.2.1/utf8/src/utf8lite/src/utf8lite.h | 55 utf8-1.2.1/utf8/src/utf8lite/src/wordscan.c |only utf8-1.2.1/utf8/src/utf8lite/tests/check_charwidth.c | 11 utf8-1.2.1/utf8/src/utf8lite/tests/check_graphscan.c | 8 utf8-1.2.1/utf8/src/utf8lite/tests/check_unicode.c | 25 utf8-1.2.1/utf8/src/utf8lite/tests/check_wordscan.c |only utf8-1.2.1/utf8/src/utf8lite/util/gen-charwidth.py | 50 utf8-1.2.1/utf8/src/utf8lite/util/gen-emojiprop.py |only utf8-1.2.1/utf8/src/utf8lite/util/gen-graphbreak.py | 6 utf8-1.2.1/utf8/src/utf8lite/util/gen-wordbreak.py |only utf8-1.2.1/utf8/tests/testthat/helper-capture_output.R | 20 utf8-1.2.1/utf8/tests/testthat/helper-locale.R | 47 utf8-1.2.1/utf8/tests/testthat/setup.R |only utf8-1.2.1/utf8/tests/testthat/test-utf8_encode.R | 171 + utf8-1.2.1/utf8/tests/testthat/test-utf8_format.R | 571 +++--- utf8-1.2.1/utf8/tests/testthat/test-utf8_normalize.R | 76 utf8-1.2.1/utf8/tests/testthat/test-utf8_print.R | 663 ++++--- utf8-1.2.1/utf8/tests/testthat/test-utf8_valid.R | 46 utf8-1.2.1/utf8/tests/testthat/test-utf8_width.R | 64 utf8-1.2.1/utf8/vignettes/utf8.Rmd | 2 45 files changed, 4864 insertions(+), 4131 deletions(-)
Title: Suess and Laws Corrections for Marine Stable Carbon Isotope Data
Description: Generates region-specific Suess and Laws corrections for
stable carbon isotope data from marine organisms collected between 1850 and 2020. Version
0.1.3 of 'SuessR' contains four built-in regions: the Bering Sea ('Bering Sea'), the
Aleutian archipelago ('Aleutians Islands'), the Gulf of Alaska ('Gulf of Alaska'), and the
subpolar North Atlantic ('Subpolar North Atlantic'). Users can supply their own environmental
data for regions currently not built into the package to generate corrections for those regions.
Author: Casey Clark [cre, aut],
Mattias Cape [aut],
Mark Shapley [aut],
Franz Mueter [aut],
Bruce Finney [aut],
Nicole Misarti [aut]
Maintainer: Casey Clark <casey.t.clark@gmail.com>
Diff between SuessR versions 0.1.2 dated 2021-03-11 and 0.1.3 dated 2021-03-12
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/SuessR_Package.R | 6 +++--- data/SuessR_Reference_Data.RData |binary man/SuessR.Rd | 2 +- man/SuessR.custom.Rd | 4 ++-- 7 files changed, 22 insertions(+), 16 deletions(-)
Title: Missing Data Imputation Using Gaussian Copulas
Description: Provides functions to impute missing values using Gaussian
copulas for mixed data types as described by Christoffersen et al.
(2021) <arXiv:2102.02642>. The method is related to Hoff (2007)
<doi:10.1214/07-AOAS107> and Zhao and Udell (2019) <arXiv:1910.12845>
but differs by making a direct approximation of the log marginal likelihood
using an extended version of the Fortran code created by Genz and Bretz
(2002) <doi:10.1198/106186002394> in addition to also support multinomial
variables.
Author: Benjamin Christoffersen [cre, aut]
(<https://orcid.org/0000-0002-7182-1346>),
Alan Genz [cph],
Frank Bretz [cph],
Torsten Hothorn [cph],
R-core [cph],
Ross Ihaka [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between mdgc versions 0.1.3 dated 2021-03-04 and 0.1.4 dated 2021-03-12
DESCRIPTION | 6 MD5 | 50 ++++---- R/RcppExports.R | 102 ++++++++-------- R/mdgc.R | 204 ++++++++++++++++++++------------- man/get_mdgc.Rd | 23 ++- man/get_mdgc_log_ml.Rd | 23 ++- man/mdgc.Rd | 7 - man/mdgc_fit.Rd | 35 +++-- man/mdgc_impute.Rd | 41 +++--- man/mdgc_log_ml.Rd | 32 +++-- man/mdgc_start_value.Rd | 27 ++-- src/RcppExports.cpp | 4 src/cpp-to-R.cpp | 17 +- src/logLik.cpp | 8 - src/new-mvt.h | 4 src/pnorm.h | 17 ++ src/qnorm.c | 17 +- src/qnorm.h | 2 src/test-pmvnorm.cpp | 8 - src/test-restrict-cdf.cpp | 60 ++++----- tests/testthat/test-cpp.R | 3 tests/testthat/test-get-log-lm-terms.R | 6 tests/testthat/test-man-files.R | 2 tests/testthat/test-mdgc-fit.R | 3 tests/testthat/test-mdgc-impute.R | 3 tests/testthat/test-multinomial.R | 2 26 files changed, 416 insertions(+), 290 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK),
Yves R. Sagaert [ctb] (Visiting Research at Centre for Marketing
Analytics and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.6.7 dated 2021-02-14 and 0.6.8 dated 2021-03-12
DESCRIPTION | 12 +- MD5 | 42 ++++----- NAMESPACE | 2 NEWS | 17 +++ R/alm.R | 91 ++++++++++--------- R/error-measures.R | 198 +++++++++++++++++++++---------------------- R/lmCombine.R | 21 +++- R/lmDynamic.R | 25 +++-- R/methods.R | 76 ++++++++++------ R/stepwise.R | 11 +- R/zzz.R | 19 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/alm.html | 149 +++++++++++++++----------------- inst/doc/greybox.html | 4 inst/doc/maUsingGreybox.html | 4 inst/doc/ro.html | 16 +-- man/alm.Rd | 8 + man/error-measures.Rd | 44 ++++----- man/lmCombine.Rd | 3 man/lmDynamic.Rd | 5 - man/predict.greybox.Rd | 2 22 files changed, 410 insertions(+), 339 deletions(-)
Title: Diet Estimated Trophic Levels
Description: Estimates fractional trophic level from quantitative and qualitative diet data and calculates electivity indices in R. Borstein (2020) <doi:10.1007/s10750-020-04417-5>.
Author: Samuel R. Borstein <sam@borstein.com>
Maintainer: Samuel R. Borstein <sam@borstein.com>
Diff between dietr versions 1.1.0 dated 2020-07-18 and 1.1.1 dated 2021-03-12
DESCRIPTION | 10 MD5 | 64 +-- NEWS.md | 14 R/CompositeIndices.R | 44 +- R/ConvertFishbaseFood.R | 2 R/DataDoc.R | 2 R/DietTroph.R | 2 R/FoodTroph.R | 1 R/PlotElectivity.R | 2 R/pkgname.R | 6 build/vignette.rds |binary data/Casaux1998.RData |binary inst/CITATION | 14 inst/doc/dietr-vignette.R | 7 inst/doc/dietr-vignette.Rmd | 11 inst/doc/dietr-vignette.pdf |binary man/Casaux1998.Rd | 66 ++-- man/CompositeIndices.Rd | 164 +++++----- man/ConvertFishbaseDiet.Rd | 72 ++-- man/ConvertFishbaseFood.Rd | 66 ++-- man/DietTroph.Rd | 2 man/FoodTroph.Rd | 1 man/GastrosomaticIndex.Rd | 82 ++--- man/PlotElectivity.Rd | 134 ++++---- man/SebastesStomachs.Rd | 64 +-- man/VacuityIndex.Rd | 82 ++--- man/dietr.Rd | 6 vignettes/dietr-vignette.Rmd | 11 vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-17-1.pdf |binary vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-18-1.pdf |binary vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-18-2.pdf |binary vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-18-3.pdf |binary vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-18-4.pdf |binary 33 files changed, 459 insertions(+), 470 deletions(-)
Title: Automatic Fixed Rank Kriging
Description: Automatic fixed rank kriging for (irregularly located)
spatial data using a class of basis functions with multi-resolution features
and ordered in terms of their resolutions. The model parameters are estimated
by maximum likelihood (ML) and the number of basis functions is determined
by Akaike's information criterion (AIC). For spatial data with either one
realization or independent replicates, the ML estimates and AIC are efficiently
computed using their closed-form expressions when no missing value occurs. Details
regarding the basis function construction, parameter estimation, and AIC calculation
can be found in Tzeng and Huang (2018) <doi:10.1080/00401706.2017.1345701>. For
data with missing values, the ML estimates are obtained using the expectation-
maximization algorithm. Apart from the number of basis functions, there are
no other tuning parameters, making the method fully automatic. Users can also
include a stationary structure in the spatial covariance, which utilizes
'LatticeKrig' package.
Author: ShengLi Tzeng [aut, cre], Hsin-Cheng Huang [aut], Wen-Ting Wang [ctb], Douglas Nychka [ctb], Colin Gillespie [ctb]
Maintainer: ShengLi Tzeng <slt.cmu@gmail.com>
Diff between autoFRK versions 1.3.3 dated 2020-09-13 and 1.4.3 dated 2021-03-12
autoFRK-1.3.3/autoFRK/man/LKextract.Rd |only autoFRK-1.3.3/autoFRK/man/LKnFRKini.Rd |only autoFRK-1.3.3/autoFRK/man/LKnFRKopt.Rd |only autoFRK-1.3.3/autoFRK/man/basisSelect.Rd |only autoFRK-1.3.3/autoFRK/man/getlik.Rd |only autoFRK-1.3.3/autoFRK/man/system_ram.Rd |only autoFRK-1.4.3/autoFRK/DESCRIPTION | 11 autoFRK-1.4.3/autoFRK/MD5 | 36 autoFRK-1.4.3/autoFRK/NEWS.md |only autoFRK-1.4.3/autoFRK/R/RcppExports.R | 38 autoFRK-1.4.3/autoFRK/R/autoFRK.R | 2849 +++++++++++++------------- autoFRK-1.4.3/autoFRK/R/global.R |only autoFRK-1.4.3/autoFRK/R/helper.R |only autoFRK-1.4.3/autoFRK/README.md |only autoFRK-1.4.3/autoFRK/man/IFelse.Rd | 12 autoFRK-1.4.3/autoFRK/man/autoFRK.Rd | 176 - autoFRK-1.4.3/autoFRK/man/extractLK.Rd |only autoFRK-1.4.3/autoFRK/man/getLikelihood.Rd |only autoFRK-1.4.3/autoFRK/man/initializeLKnFRK.Rd |only autoFRK-1.4.3/autoFRK/man/mrts.Rd | 103 autoFRK-1.4.3/autoFRK/man/predict.FRK.Rd | 25 autoFRK-1.4.3/autoFRK/man/predict.mrts.Rd | 2 autoFRK-1.4.3/autoFRK/man/selectBasis.Rd |only autoFRK-1.4.3/autoFRK/man/setLKnFRKOption.Rd |only autoFRK-1.4.3/autoFRK/man/subknot.Rd | 2 autoFRK-1.4.3/autoFRK/man/systemRam.Rd |only autoFRK-1.4.3/autoFRK/src/autoFRK.cpp | 2 27 files changed, 1685 insertions(+), 1571 deletions(-)
Title: Process and Display Data from Air Quality Sensors
Description: Process and display data from air quality sensors.
Initial focus is on PM2.5 measurements from sensors produced by 'PurpleAir'
<https://www2.purpleair.com>.
Author: Jonathan Callahan [aut, cre],
Hans Martin [aut],
Kayleigh Wilson [aut],
Tate Brasel [aut],
Helen Miller [aut],
Vasileios Papapostolou [ctb],
Ashley Collier-Oxandale [ctb],
Brandon Feenstra [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between AirSensor versions 1.0.2 dated 2020-10-08 and 1.0.8 dated 2021-03-12
AirSensor-1.0.2/AirSensor/R/PurpleAirSoH_dailyOtherFit.R |only AirSensor-1.0.2/AirSensor/data/datalist |only AirSensor-1.0.2/AirSensor/man/PurpleAirSoH_dailyOtherFit.Rd |only AirSensor-1.0.8/AirSensor/DESCRIPTION | 10 AirSensor-1.0.8/AirSensor/MD5 | 109 +- AirSensor-1.0.8/AirSensor/NAMESPACE | 2 AirSensor-1.0.8/AirSensor/NEWS.md | 33 AirSensor-1.0.8/AirSensor/R/AirSensor.R | 2 AirSensor-1.0.8/AirSensor/R/PurpleAirSoH_dailyABtTest.R | 5 AirSensor-1.0.8/AirSensor/R/PurpleAirSoH_dailyMetFit.R |only AirSensor-1.0.8/AirSensor/R/PurpleAirSoH_dailyPctDC.R | 4 AirSensor-1.0.8/AirSensor/R/PurpleAirSoH_dailyPctValid.R | 5 AirSensor-1.0.8/AirSensor/R/data.R | 17 AirSensor-1.0.8/AirSensor/R/pas_addCommunityRegion.R | 32 AirSensor-1.0.8/AirSensor/R/pas_createNew.R | 4 AirSensor-1.0.8/AirSensor/R/pas_downloadParseRawData.R | 4 AirSensor-1.0.8/AirSensor/R/pas_load.R | 15 AirSensor-1.0.8/AirSensor/R/pas_staticMap.R | 1 AirSensor-1.0.8/AirSensor/R/pas_upgrade.R | 2 AirSensor-1.0.8/AirSensor/R/pat_dailySoH.R | 4 AirSensor-1.0.8/AirSensor/R/pat_dygraph.R | 14 AirSensor-1.0.8/AirSensor/R/pat_externalFit.R | 6 AirSensor-1.0.8/AirSensor/R/pat_load.R | 5 AirSensor-1.0.8/AirSensor/R/pat_loadLatest.R | 2 AirSensor-1.0.8/AirSensor/R/pat_loadMonth.R | 2 AirSensor-1.0.8/AirSensor/R/pat_monitorComparison.R | 105 +- AirSensor-1.0.8/AirSensor/README.md | 21 AirSensor-1.0.8/AirSensor/build/vignette.rds |binary AirSensor-1.0.8/AirSensor/data/example_pas.rda |binary AirSensor-1.0.8/AirSensor/data/example_pas_raw.rda |binary AirSensor-1.0.8/AirSensor/data/example_pat.rda |binary AirSensor-1.0.8/AirSensor/data/example_pat_failure_A.rda |binary AirSensor-1.0.8/AirSensor/data/example_pat_failure_B.rda |binary AirSensor-1.0.8/AirSensor/data/example_sensor.rda |binary AirSensor-1.0.8/AirSensor/data/example_sensor_scaqmd.rda |binary AirSensor-1.0.8/AirSensor/inst/doc/AirSensor_Function_Overview.html | 520 ++++------ AirSensor-1.0.8/AirSensor/inst/doc/Developer_Style_Guide.html | 466 ++++---- AirSensor-1.0.8/AirSensor/man/PurpleAirSoH_dailyABtTest.Rd | 4 AirSensor-1.0.8/AirSensor/man/PurpleAirSoH_dailyMetFit.Rd |only AirSensor-1.0.8/AirSensor/man/PurpleAirSoH_dailyPctDC.Rd | 7 AirSensor-1.0.8/AirSensor/man/PurpleAirSoH_dailyPctValid.Rd | 5 AirSensor-1.0.8/AirSensor/man/example_pas.Rd | 3 AirSensor-1.0.8/AirSensor/man/example_pas_raw.Rd | 3 AirSensor-1.0.8/AirSensor/man/example_pat.Rd | 1 AirSensor-1.0.8/AirSensor/man/example_pat_failure_A.Rd | 1 AirSensor-1.0.8/AirSensor/man/example_pat_failure_B.Rd | 1 AirSensor-1.0.8/AirSensor/man/example_sensor.Rd | 1 AirSensor-1.0.8/AirSensor/man/example_sensor_scaqmd.Rd | 1 AirSensor-1.0.8/AirSensor/man/pas_createNew.Rd | 2 AirSensor-1.0.8/AirSensor/man/pas_downloadParseRawData.Rd | 4 AirSensor-1.0.8/AirSensor/man/pas_upgrade.Rd | 2 AirSensor-1.0.8/AirSensor/man/pat_dailySoH.Rd | 4 AirSensor-1.0.8/AirSensor/man/pat_dygraph.Rd | 14 AirSensor-1.0.8/AirSensor/man/pat_load.Rd | 5 AirSensor-1.0.8/AirSensor/man/pat_loadLatest.Rd | 2 AirSensor-1.0.8/AirSensor/man/pat_loadMonth.Rd | 2 AirSensor-1.0.8/AirSensor/tests/testthat/test-pat_multiPlot.R | 20 AirSensor-1.0.8/AirSensor/vignettes/articles/pas_introduction.Rmd | 10 58 files changed, 764 insertions(+), 718 deletions(-)
Title: A Minimal Tool Set for Gathering USDA Quick Stat Data for
Analysis and Visualization
Description: Provides a consistent API to pull United States
Department of Agriculture census and survey data from the National
Agricultural Statistics Service (NASS) QuickStats service.
Author: Brad Lindblad [aut, cre],
Michael Thomas [ctb],
Alex Mindeman [ctb]
Maintainer: Brad Lindblad <me@bradlindblad.com>
Diff between tidyUSDA versions 0.3.0 dated 2020-12-03 and 0.3.1 dated 2021-03-12
DESCRIPTION | 10 ++-- MD5 | 10 ++-- NEWS.md | 4 + R/getQuickstat.R | 13 +++++ README.md | 6 ++ inst/doc/using_tidyusda.html | 102 ++++++++++++++++++++++++++----------------- 6 files changed, 94 insertions(+), 51 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Provides a common framework for optimization of
black-box functions for other packages, e.g. 'mlr3tuning' or
'mlr3fselect'. It offers various optimization methods e.g. grid
search, random search and generalized simulated annealing.
Author: Marc Becker [cre, aut] (<https://orcid.org/0000-0002-8115-0400>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 0.3.0 dated 2021-01-23 and 0.3.1 dated 2021-03-12
DESCRIPTION | 6 MD5 | 76 +++--- NEWS.md | 8 R/Archive.R | 8 R/Objective.R | 3 R/OptimInstance.R | 24 +- R/Optimizer.R | 19 + R/Terminator.R | 3 R/TerminatorClockTime.R | 4 R/TerminatorCombo.R | 3 R/TerminatorEvals.R | 1 R/TerminatorNone.R | 1 R/TerminatorPerfReached.R | 1 R/TerminatorRunTime.R | 6 R/TerminatorStagnation.R | 2 R/TerminatorStagnationBatch.R | 2 README.md | 19 - build/partial.rdb |binary inst/doc/bbotk.R | 1 inst/doc/bbotk.Rmd | 1 inst/doc/bbotk.html | 278 ++++++++++++------------ man/Archive.Rd | 10 man/OptimInstance.Rd | 15 + man/OptimInstanceMultiCrit.Rd | 1 man/OptimInstanceSingleCrit.Rd | 1 man/Optimizer.Rd | 9 man/Terminator.Rd | 2 man/bbotk-package.Rd | 6 man/mlr_terminators_run_time.Rd | 4 tests/testthat/test_Objective.R | 12 + tests/testthat/test_OptimInstanceSingleCrit.R | 6 tests/testthat/test_TerminatorClockTime.R | 7 tests/testthat/test_TerminatorEvals.R | 6 tests/testthat/test_TerminatorNone.R | 6 tests/testthat/test_TerminatorPerfReached.R | 6 tests/testthat/test_TerminatorRunTime.R | 6 tests/testthat/test_TerminatorStagnation.R | 6 tests/testthat/test_TerminatorStagnationBatch.R | 6 vignettes/bbotk.Rmd | 1 39 files changed, 357 insertions(+), 219 deletions(-)
Title: Bayesian Survival Analysis for Right Censored Data
Description: Performs unadjusted Bayesian survival analysis for right censored time-to-event data. The main function, BayesSurv(), computes the posterior mean and a credible band for the survival function and for the cumulative hazard, as well as the posterior mean for the hazard, starting from a piecewise exponential (histogram) prior with Gamma distributed heights that are either independent, or have a Markovian dependence structure.
A function, PlotBayesSurv(), is provided to easily create plots of the posterior means of the hazard, cumulative hazard and survival function, with a credible band accompanying the latter two.
The priors and samplers are described in more detail in Castillo and Van der Pas (2020) "Multiscale Bayesian survival analysis" <arXiv:2005.02889>. In that paper it is also shown that the credible bands for the survival function and the cumulative hazard can be considered confidence bands (under mild conditions) and thus offer reliable uncertainty quantification.
Author: Stephanie van der Pas [aut, cre],
Ismael Castillo [aut]
Maintainer: Stephanie van der Pas <s.l.vanderpas@amsterdamumc.nl>
Diff between BayesSurvival versions 0.1.0 dated 2020-05-08 and 0.2.0 dated 2021-03-12
DESCRIPTION | 11 ++++++----- MD5 | 14 ++++++++++---- NEWS.md |only R/BayesSurv.R | 2 ++ R/PlotBayesSurv.R | 6 +++--- build |only inst |only man/BayesSurv.Rd | 2 ++ vignettes |only 9 files changed, 23 insertions(+), 12 deletions(-)
Title: Sparse Multi-Type Regularized Feature Modeling
Description: Implementation of the SMuRF algorithm of Devriendt et al. (2021) <doi:10.1016/j.insmatheco.2020.11.010> to fit generalized linear models (GLMs) with multiple types of predictors via regularized maximum likelihood.
Author: Tom Reynkens [aut, cre] (<https://orcid.org/0000-0002-5516-5107>),
Sander Devriendt [aut],
Katrien Antonio [aut]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between smurf versions 1.0.7 dated 2020-11-24 and 1.1.0 dated 2021-03-12
DESCRIPTION | 12 +- MD5 | 42 +++---- R/Penalty_weights.R | 22 ++- R/glmsmurf.R | 11 + build/vignette.rds |binary inst/NEWS.Rd | 23 +++ inst/doc/smurf.R | 6 - inst/doc/smurf.Rmd | 6 - inst/doc/smurf.html | 252 +++++++++++++++--------------------------- inst/examples/Rent_example1.R | 2 inst/examples/Rent_example2.R | 6 - man/glmsmurf.Rd | 4 man/plot_lambda.Rd | 6 - man/smurf-package.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 tests/testthat/helper_fit.R | 8 - tests/testthat/test_general.R | 8 - vignettes/Plot_lambda1.png |binary vignettes/Plot_lambda2.png |binary vignettes/smurf.Rmd | 6 - vignettes/smurf.bib | 7 - 22 files changed, 201 insertions(+), 226 deletions(-)
Title: Dynamic 'R' Prompt
Description: Set the 'R' prompt dynamically, from a function. The package
contains some examples to include various useful dynamic information
in the prompt: the status of the last command (success or failure);
the amount of memory allocated by the current 'R' process; the name of
the R package(s) loaded by 'pkgload' and/or 'devtools'; various 'git'
information: the name of the active branch, whether it is dirty,
if it needs pushes pulls. You can also create your own prompt if you
don't like the predefined examples.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between prompt versions 1.0.0 dated 2021-03-04 and 1.0.1 dated 2021-03-12
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/prompt-devtools.R | 2 -- R/prompt-git.R | 4 ---- man/prompt_devtools.Rd | 3 --- man/prompt_git.Rd | 4 ---- tests/testthat/test-prompt-git.R | 2 ++ 8 files changed, 16 insertions(+), 23 deletions(-)
Title: Semi-Automatic Preprocessing of Messy Data with Change Tracking
for Dataset Cleaning
Description: Tools for assessing data quality, performing exploratory analysis, and
semi-automatic preprocessing of messy data with change tracking for integral dataset cleaning.
Author: David Hervas Marin
Maintainer: David Hervas Marin <ddhervas@yahoo.es>
Diff between clickR versions 0.5.27 dated 2020-12-07 and 0.6.64 dated 2021-03-12
clickR-0.5.27/clickR/R/coefplot.R |only clickR-0.5.27/clickR/man/fix.NA.Rd |only clickR-0.5.27/clickR/man/fix.dates.Rd |only clickR-0.5.27/clickR/man/fix.factors.Rd |only clickR-0.5.27/clickR/man/fix.levels.Rd |only clickR-0.5.27/clickR/man/fix.numerics.Rd |only clickR-0.5.27/clickR/man/is.it.Rd |only clickR-0.6.64/clickR/DESCRIPTION | 18 clickR-0.6.64/clickR/MD5 | 125 ++-- clickR-0.6.64/clickR/NAMESPACE | 10 clickR-0.6.64/clickR/NEWS | 5 clickR-0.6.64/clickR/R/check_quality.R | 23 clickR-0.6.64/clickR/R/deprecated.R |only clickR-0.6.64/clickR/R/descriptive.R | 614 ++-------------------- clickR-0.6.64/clickR/R/fix_functions.R |only clickR-0.6.64/clickR/R/report_model.R | 379 +++++++++++-- clickR-0.6.64/clickR/man/GK_assoc.Rd | 48 - clickR-0.6.64/clickR/man/VarCorr.Rd | 8 clickR-0.6.64/clickR/man/check_quality.Rd | 84 +-- clickR-0.6.64/clickR/man/clickR-deprecated.Rd |only clickR-0.6.64/clickR/man/coefplot.Rd | 132 ++-- clickR-0.6.64/clickR/man/descriptive.Rd | 54 - clickR-0.6.64/clickR/man/extreme_values.Rd | 42 - clickR-0.6.64/clickR/man/fix_NA.Rd |only clickR-0.6.64/clickR/man/fix_all.Rd |only clickR-0.6.64/clickR/man/fix_concat.Rd |only clickR-0.6.64/clickR/man/fix_dates.Rd |only clickR-0.6.64/clickR/man/fix_factors.Rd |only clickR-0.6.64/clickR/man/fix_levels.Rd |only clickR-0.6.64/clickR/man/fix_numerics.Rd |only clickR-0.6.64/clickR/man/forge.Rd | 80 +- clickR-0.6.64/clickR/man/fxd.Rd | 8 clickR-0.6.64/clickR/man/ipboxplot.Rd | 44 - clickR-0.6.64/clickR/man/make_csv_table.Rd | 8 clickR-0.6.64/clickR/man/make_latex_table.Rd | 8 clickR-0.6.64/clickR/man/make_table.Rd | 54 + clickR-0.6.64/clickR/man/make_word_table.Rd | 8 clickR-0.6.64/clickR/man/manual_fix.Rd |only clickR-0.6.64/clickR/man/matrixPaste.Rd | 2 clickR-0.6.64/clickR/man/mine.plot.Rd | 79 +- clickR-0.6.64/clickR/man/nice_names.Rd | 40 - clickR-0.6.64/clickR/man/outliers.Rd |only clickR-0.6.64/clickR/man/plot.reportmodel.Rd | 48 - clickR-0.6.64/clickR/man/remove_empty.Rd |only clickR-0.6.64/clickR/man/report.Rd | 52 + clickR-0.6.64/clickR/man/report.betareg.Rd | 84 +-- clickR-0.6.64/clickR/man/report.brmsfit.Rd | 78 +- clickR-0.6.64/clickR/man/report.clm.Rd | 84 +-- clickR-0.6.64/clickR/man/report.clmm.Rd | 84 +-- clickR-0.6.64/clickR/man/report.coxph.Rd | 84 +-- clickR-0.6.64/clickR/man/report.data.frame.Rd | 88 +-- clickR-0.6.64/clickR/man/report.default.Rd | 8 clickR-0.6.64/clickR/man/report.factor.Rd | 8 clickR-0.6.64/clickR/man/report.glm.Rd | 84 +-- clickR-0.6.64/clickR/man/report.glmerMod.Rd | 84 +-- clickR-0.6.64/clickR/man/report.glmmadmb.Rd | 84 +-- clickR-0.6.64/clickR/man/report.glmnet.Rd | 96 +-- clickR-0.6.64/clickR/man/report.lm.Rd | 84 +-- clickR-0.6.64/clickR/man/report.lmerMod.Rd | 84 +-- clickR-0.6.64/clickR/man/report.lqmm.Rd | 84 +-- clickR-0.6.64/clickR/man/report.merModLmerTest.Rd | 84 +-- clickR-0.6.64/clickR/man/report.numeric.Rd | 8 clickR-0.6.64/clickR/man/report.rlm.Rd | 84 +-- clickR-0.6.64/clickR/man/report.rq.Rd | 84 +-- clickR-0.6.64/clickR/man/restore_changes.Rd | 49 - clickR-0.6.64/clickR/man/rob.ci.Rd | 50 - clickR-0.6.64/clickR/man/rob.pvals.Rd | 8 clickR-0.6.64/clickR/man/search_scripts.Rd | 42 - clickR-0.6.64/clickR/man/set_noms.Rd | 8 clickR-0.6.64/clickR/man/text_date.Rd |only clickR-0.6.64/clickR/man/track_changes.Rd | 46 - clickR-0.6.64/clickR/man/unforge.Rd | 64 +- clickR-0.6.64/clickR/man/workspace.Rd | 46 - clickR-0.6.64/clickR/man/workspace_sapply.Rd | 48 - 74 files changed, 1824 insertions(+), 1888 deletions(-)
Title: An Introduction to Applied Multivariate Analysis with R
Description: Functions, data sets, analyses and examples from the book
`An Introduction to Applied Multivariate Analysis with R'
(Brian S. Everitt and Torsten Hothorn, Springer, 2011).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between MVA versions 1.0-6 dated 2015-07-28 and 1.0-7 dated 2021-03-12
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/Ch-Errata.R | 1 - inst/doc/Ch-Errata.Rnw | 6 ++++++ inst/doc/Ch-Errata.pdf |binary vignettes/Ch-Errata.Rnw | 6 ++++++ 7 files changed, 22 insertions(+), 11 deletions(-)
Title: Tuning for 'mlr3'
Description: Implements methods for hyperparameter tuning with
'mlr3', e.g. Grid Search, Random Search, or Simulated Annealing.
Various termination criteria can be set and combined. The class
'AutoTuner' provides a convenient way to perform nested resampling in
combination with 'mlr3'.
Author: Marc Becker [cre, aut] (<https://orcid.org/0000-0002-8115-0400>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Daniel Schalk [aut] (<https://orcid.org/0000-0003-0950-1947>)
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 0.7.0 dated 2021-02-11 and 0.8.0 dated 2021-03-12
DESCRIPTION | 6 MD5 | 36 +++-- NAMESPACE | 3 NEWS.md | 8 + R/ArchiveTuning.R | 9 + R/AutoTuner.R | 3 R/ObjectiveTuning.R | 3 R/sugar.R | 164 +++++++++++++++++++++++++ build/partial.rdb |binary man/ArchiveTuning.Rd | 21 ++- man/AutoTuner.Rd | 10 + man/ObjectiveTuning.Rd | 7 - man/TuningInstanceMultiCrit.Rd | 7 - man/TuningInstanceSingleCrit.Rd | 7 - man/auto_tuner.Rd |only man/tune.Rd |only man/tune_nested.Rd |only tests/testthat/test_AutoTuner.R | 12 - tests/testthat/test_TuningInstanceMultiCrit.R | 6 tests/testthat/test_TuningInstanceSingleCrit.R | 26 --- tests/testthat/test_tune.R |only 21 files changed, 248 insertions(+), 80 deletions(-)
Title: Improved Predictors
Description: Improved predictive models by indirect classification and
bagging for classification, regression and survival problems
as well as resampling based estimators of prediction error.
Author: Andrea Peters [aut],
Torsten Hothorn [aut, cre],
Brian D. Ripley [ctb],
Terry Therneau [ctb],
Beth Atkinson [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between ipred versions 0.9-10 dated 2021-03-04 and 0.9-11 dated 2021-03-12
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- inst/NEWS | 4 ++++ inst/doc/ipred-examples.pdf |binary 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2020) <arXiv:2004.02653> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the included version of Eigen [ctb, cph],
Timothy A. Davis [cph],
Guolin Ke [ctb],
Damien Soukhavong [ctb],
James Lamb [ctb],
Other authors of LightGBM for the included version of LightGBM [ctb],
Microsoft Corporation [cph],
Dropbox, Inc. [cph],
Jay Loden [cph],
Dave Daeschler [cph],
Giampaolo Rodola [cph],
Alberto Ferreira [ctb],
Daniel Lemire [ctb],
Victor Zverovich [cph],
IBM Corporation [ctb]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 0.4.0 dated 2021-02-17 and 0.5.0 dated 2021-03-12
gpboost-0.4.0/gpboost/src/include/Eigen/src/Geometry/arch/Geometry_SSE.h |only gpboost-0.4.0/gpboost/src/include/Eigen/src/LU/arch/Inverse_SSE.h |only gpboost-0.5.0/gpboost/DESCRIPTION | 8 gpboost-0.5.0/gpboost/MD5 | 318 - gpboost-0.5.0/gpboost/NAMESPACE | 1 gpboost-0.5.0/gpboost/R/GPModel.R | 98 gpboost-0.5.0/gpboost/R/gpb.Booster.R | 212 gpboost-0.5.0/gpboost/R/gpb.Dataset.R | 4 gpboost-0.5.0/gpboost/R/gpb.cv.R | 609 + gpboost-0.5.0/gpboost/R/gpb.train.R | 6 gpboost-0.5.0/gpboost/R/gpboost.R | 5 gpboost-0.5.0/gpboost/README.md | 7 gpboost-0.5.0/gpboost/configure.ac | 2 gpboost-0.5.0/gpboost/demo/00Index | 3 gpboost-0.5.0/gpboost/demo/GPBoost_algorithm.R | 4 gpboost-0.5.0/gpboost/demo/classification_non_Gaussian_data.R | 55 gpboost-0.5.0/gpboost/demo/cross_validation.R | 6 gpboost-0.5.0/gpboost/demo/examples_in_R_package_documentation.R | 35 gpboost-0.5.0/gpboost/demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 3 gpboost-0.5.0/gpboost/demo/linear_Gaussian_process_mixed_effects_models.R | 7 gpboost-0.5.0/gpboost/demo/parameter_tuning.R |only gpboost-0.5.0/gpboost/man/GPModel.Rd | 4 gpboost-0.5.0/gpboost/man/fit.GPModel.Rd | 3 gpboost-0.5.0/gpboost/man/fit.Rd | 3 gpboost-0.5.0/gpboost/man/fitGPModel.Rd | 3 gpboost-0.5.0/gpboost/man/gpb.cv.Rd | 49 gpboost-0.5.0/gpboost/man/gpb.grid.search.tune.parameters.Rd |only gpboost-0.5.0/gpboost/man/gpb.load.Rd | 8 gpboost-0.5.0/gpboost/man/gpb.save.Rd | 27 gpboost-0.5.0/gpboost/man/gpb.train.Rd | 3 gpboost-0.5.0/gpboost/man/gpboost.Rd | 3 gpboost-0.5.0/gpboost/man/loadGPModel.Rd | 3 gpboost-0.5.0/gpboost/man/predict.GPModel.Rd | 3 gpboost-0.5.0/gpboost/man/predict.gpb.Booster.Rd | 3 gpboost-0.5.0/gpboost/man/saveGPModel.Rd | 3 gpboost-0.5.0/gpboost/man/summary.GPModel.Rd | 3 gpboost-0.5.0/gpboost/src/boosting/gbdt.cpp | 2 gpboost-0.5.0/gpboost/src/gpboost_R.cpp | 1541 ++--- gpboost-0.5.0/gpboost/src/gpboost_R.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/Cholesky | 1 gpboost-0.5.0/gpboost/src/include/Eigen/Core | 12 gpboost-0.5.0/gpboost/src/include/Eigen/Eigenvalues | 1 gpboost-0.5.0/gpboost/src/include/Eigen/Geometry | 5 gpboost-0.5.0/gpboost/src/include/Eigen/Householder | 1 gpboost-0.5.0/gpboost/src/include/Eigen/Jacobi | 1 gpboost-0.5.0/gpboost/src/include/Eigen/LU | 5 gpboost-0.5.0/gpboost/src/include/Eigen/QR | 1 gpboost-0.5.0/gpboost/src/include/Eigen/SVD | 1 gpboost-0.5.0/gpboost/src/include/Eigen/src/Cholesky/LDLT.h | 10 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Array.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/AssignEvaluator.h | 94 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/CwiseNullaryOp.h | 79 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/CwiseUnaryView.h | 12 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/DenseBase.h | 22 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Dot.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/GeneralProduct.h | 6 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/GenericPacketMath.h | 491 + gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/GlobalFunctions.h | 5 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/MathFunctions.h | 355 - gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/MathFunctionsImpl.h | 89 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Matrix.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/NumTraits.h | 66 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/PlainObjectBase.h | 16 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/ProductEvaluators.h | 165 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Random.h | 36 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Redux.h | 18 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Ref.h | 137 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Reshaped.h | 3 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Select.h | 6 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/SolveTriangular.h | 18 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/StableNorm.h | 57 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Stride.h | 9 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/Transpositions.h | 26 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AVX/Complex.h | 36 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AVX/MathFunctions.h | 79 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AVX/PacketMath.h | 379 - gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AVX/TypeCasting.h | 48 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AVX512/Complex.h | 37 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AVX512/MathFunctions.h | 172 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AVX512/PacketMath.h | 377 - gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AVX512/TypeCasting.h | 16 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AltiVec/Complex.h | 18 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h | 3066 +++++++++- gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h |only gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h |only gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/AltiVec/PacketMath.h | 383 - gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/CUDA/Complex.h | 308 - gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/Default/BFloat16.h | 140 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h | 1146 +++ gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h | 55 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/Default/Half.h | 482 + gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/GPU/PacketMath.h | 459 - gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/NEON/Complex.h | 29 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h |only gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/NEON/MathFunctions.h | 24 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/NEON/PacketMath.h | 1292 +++- gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/NEON/TypeCasting.h | 8 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/SSE/Complex.h | 45 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/SSE/MathFunctions.h | 33 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/SSE/PacketMath.h | 390 - gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/SSE/TypeCasting.h | 7 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/SVE |only gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h | 3 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/SYCL/MathFunctions.h | 18 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/ZVector/Complex.h | 21 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/ZVector/MathFunctions.h | 10 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/arch/ZVector/PacketMath.h | 47 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/functors/BinaryFunctors.h | 167 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/functors/NullaryFunctors.h | 6 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/functors/StlFunctors.h | 4 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/functors/UnaryFunctors.h | 58 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h | 145 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/products/GeneralMatrixMatrix.h | 6 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/products/Parallelizer.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/products/TriangularSolverMatrix.h | 4 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/BlasUtil.h | 112 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/ConfigureVectorization.h | 62 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/Constants.h | 19 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/DisableStupidWarnings.h | 3 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/ForwardDeclarations.h | 4 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/Macros.h | 259 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/Memory.h | 48 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/Meta.h | 178 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/StaticAssert.h | 5 gpboost-0.5.0/gpboost/src/include/Eigen/src/Core/util/XprHelper.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | 24 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/AlignedBox.h | 102 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/AngleAxis.h | 8 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/EulerAngles.h | 6 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/ParametrizedLine.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/Quaternion.h | 22 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/Rotation2D.h | 6 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/Scaling.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/Transform.h | 26 gpboost-0.5.0/gpboost/src/include/Eigen/src/Geometry/arch/Geometry_SIMD.h |only gpboost-0.5.0/gpboost/src/include/Eigen/src/Jacobi/Jacobi.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/LU/arch/InverseSize4.h |only gpboost-0.5.0/gpboost/src/include/Eigen/src/SVD/BDCSVD.h | 2 gpboost-0.5.0/gpboost/src/include/Eigen/src/SparseCholesky/SimplicialCholesky.h | 8 gpboost-0.5.0/gpboost/src/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h | 12 gpboost-0.5.0/gpboost/src/include/Eigen/src/SparseCore/SparseMatrix.h | 11 gpboost-0.5.0/gpboost/src/include/Eigen/src/SparseCore/SparseSelfAdjointView.h | 7 gpboost-0.5.0/gpboost/src/include/Eigen/src/SparseLU/SparseLU.h | 151 gpboost-0.5.0/gpboost/src/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h | 74 gpboost-0.5.0/gpboost/src/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h | 13 gpboost-0.5.0/gpboost/src/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h | 10 gpboost-0.5.0/gpboost/src/include/GPBoost/cov_fcts.h | 8 gpboost-0.5.0/gpboost/src/include/GPBoost/likelihoods.h | 1333 +++- gpboost-0.5.0/gpboost/src/include/GPBoost/re_comp.h | 1871 +++--- gpboost-0.5.0/gpboost/src/include/GPBoost/re_model.h | 2 gpboost-0.5.0/gpboost/src/include/GPBoost/re_model_template.h | 1729 +++-- gpboost-0.5.0/gpboost/src/include/GPBoost/type_defs.h | 8 gpboost-0.5.0/gpboost/src/metric/binary_metric.hpp | 8 gpboost-0.5.0/gpboost/src/metric/regression_metric.hpp | 10 gpboost-0.5.0/gpboost/src/objective/regression_objective.hpp | 2 gpboost-0.5.0/gpboost/src/re_model.cpp | 193 gpboost-0.5.0/gpboost/tests/testthat/test_GPBoost_algorithm.R | 404 - gpboost-0.5.0/gpboost/tests/testthat/test_GPBoost_algorithm_non_Gaussian_data.R | 843 ++ gpboost-0.5.0/gpboost/tests/testthat/test_GPModel_gaussian_process.R | 3 gpboost-0.5.0/gpboost/tests/testthat/test_GPModel_grouped_random_effects.R | 558 - gpboost-0.5.0/gpboost/tests/testthat/test_GPModel_non_Gaussian_data.R | 719 +- gpboost-0.5.0/gpboost/tests/testthat/test_basic.R | 37 gpboost-0.5.0/gpboost/tests/testthat/test_dataset.R | 3 gpboost-0.5.0/gpboost/tests/testthat/test_gpb.Booster.R | 206 164 files changed, 16897 insertions(+), 6540 deletions(-)
Title: Reproducible Scripts via Version-Specific Package Loading
Description: Make R scripts that rely on packages reproducible, by ensuring that
every time a given script is run, the same version of the used packages are
loaded (instead of whichever version the user running the script happens to
have installed). This is achieved by using the new command
groundhog.library() instead of the base command library(), and including a
date in the call. The date is used to call on the same version of the
package every time (the most recent version available on CRAN at that date).
Author: Uri Simonsohn [aut, cre] (<https://orcid.org/0000-0002-8601-7211>),
Hugo Gruson [ctb, aut] (<https://orcid.org/0000-0002-4094-1476>)
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between groundhog versions 1.2.0 dated 2021-01-14 and 1.3.2 dated 2021-03-12
groundhog-1.2.0/groundhog/R/researchbox_functions.R |only groundhog-1.2.0/groundhog/man/as.DateYMD.Rd |only groundhog-1.2.0/groundhog/man/check.mismatch.R.Rd |only groundhog-1.2.0/groundhog/man/check.snowball.conflict.Rd |only groundhog-1.2.0/groundhog/man/estimate.seconds.left.Rd |only groundhog-1.2.0/groundhog/man/get.R.pkg.date.Rd |only groundhog-1.2.0/groundhog/man/get.active.Rd |only groundhog-1.2.0/groundhog/man/get.all.dependencies.Rd |only groundhog-1.2.0/groundhog/man/get.date.for.install.binary.Rd |only groundhog-1.2.0/groundhog/man/get.dependencies.Rd |only groundhog-1.2.0/groundhog/man/get.installation.time.Rd |only groundhog-1.2.0/groundhog/man/get.installed_path.Rd |only groundhog-1.2.0/groundhog/man/get.pkg_search_paths.Rd |only groundhog-1.2.0/groundhog/man/get.version.Rd |only groundhog-1.2.0/groundhog/man/install.snowball.Rd |only groundhog-1.2.0/groundhog/man/install.source.Rd |only groundhog-1.2.0/groundhog/man/installation.feedback.Rd |only groundhog-1.2.0/groundhog/man/is.pkg_vrs.installed.Rd |only groundhog-1.2.0/groundhog/man/load.cran.toc.Rd |only groundhog-1.2.0/groundhog/man/msg.R.switch.Rd |only groundhog-1.2.0/groundhog/man/r.version.check.Rd |only groundhog-1.2.0/groundhog/man/researchbox.Rd |only groundhog-1.2.0/groundhog/man/update_cran.toc_if.needed.Rd |only groundhog-1.3.2/groundhog/DESCRIPTION | 7 groundhog-1.3.2/groundhog/MD5 | 96 +--- groundhog-1.3.2/groundhog/NAMESPACE | 12 groundhog-1.3.2/groundhog/R/check.mismatch.R.R | 17 groundhog-1.3.2/groundhog/R/check.snowball.conflict.R | 256 +++++++---- groundhog-1.3.2/groundhog/R/estimate.seconds.left.R | 18 groundhog-1.3.2/groundhog/R/get.R.pkg.date.R | 29 - groundhog-1.3.2/groundhog/R/get.active.R | 27 - groundhog-1.3.2/groundhog/R/get.current.packages.R | 15 groundhog-1.3.2/groundhog/R/get.date.for.install.binary.R | 16 groundhog-1.3.2/groundhog/R/get.dependencies.R | 11 groundhog-1.3.2/groundhog/R/get.groundhog.folder.R | 17 groundhog-1.3.2/groundhog/R/get.installation.time.R | 20 groundhog-1.3.2/groundhog/R/get.installed_path.R | 18 groundhog-1.3.2/groundhog/R/get.pkg_search_paths.R | 23 groundhog-1.3.2/groundhog/R/get.snowball.R | 24 - groundhog-1.3.2/groundhog/R/get.version.R | 19 groundhog-1.3.2/groundhog/R/groundhog.library.R | 223 ++++++--- groundhog-1.3.2/groundhog/R/install.snowball.R | 47 +- groundhog-1.3.2/groundhog/R/install.source.R | 15 groundhog-1.3.2/groundhog/R/installation.feedback.R | 14 groundhog-1.3.2/groundhog/R/load.cran.toc.R | 25 - groundhog-1.3.2/groundhog/R/msg.R.switch.R | 20 groundhog-1.3.2/groundhog/R/r.version.check.R | 44 - groundhog-1.3.2/groundhog/R/remove.conflict.R |only groundhog-1.3.2/groundhog/R/toc.R | 7 groundhog-1.3.2/groundhog/R/update_cran.toc_if.needed.R | 23 groundhog-1.3.2/groundhog/R/utils.R | 69 ++ groundhog-1.3.2/groundhog/R/zzz.R | 10 groundhog-1.3.2/groundhog/README.md | 12 groundhog-1.3.2/groundhog/inst/cran.times.rds |binary groundhog-1.3.2/groundhog/inst/cran.toc.rds |binary groundhog-1.3.2/groundhog/man/get.groundhog.folder.Rd | 9 groundhog-1.3.2/groundhog/man/get.snowball.Rd | 57 +- groundhog-1.3.2/groundhog/man/groundhog.library.Rd | 7 groundhog-1.3.2/groundhog/man/reinstall.conflicts.Rd |only groundhog-1.3.2/groundhog/man/see.unistalled.conflicts.Rd |only groundhog-1.3.2/groundhog/man/set.groundhog.folder.Rd | 6 groundhog-1.3.2/groundhog/man/toc.Rd | 10 62 files changed, 682 insertions(+), 541 deletions(-)
Title: Efficient Computation of Ordinary and Generalized Poisson
Binomial Distributions
Description: Efficient implementations of multiple exact and approximate methods as described in Hong (2013) <doi:10.1016/j.csda.2012.10.006>, Biscarri, Zhao & Brunner (2018) <doi:10.1016/j.csda.2018.01.007> and Zhang, Hong & Balakrishnan (2018) <doi:10.1080/00949655.2018.1440294> for computing the probability mass, cumulative distribution and quantile functions, as well as generating random numbers for both the ordinary and generalized Poisson binomial distribution.
Author: Florian Junge [aut, cre]
Maintainer: Florian Junge <florian.junge@h-da.de>
Diff between PoissonBinomial versions 1.2.1 dated 2020-11-26 and 1.2.2 dated 2021-03-12
DESCRIPTION | 10 MD5 | 43 NEWS.md | 14 R/PoissonBinomial.R | 99 - R/gpbinom.R | 728 ++++++------- R/pbinom.R | 7 R/utility.R | 3 build/partial.rdb |only build/vignette.rds |binary inst/doc/intro.html | 522 ++------- inst/doc/proc_approx.R | 4 inst/doc/proc_approx.Rmd | 8 inst/doc/proc_approx.html | 1750 ++++++++++++++------------------- inst/doc/proc_exact.R | 12 inst/doc/proc_exact.Rmd | 16 inst/doc/proc_exact.html | 1248 +++++++++-------------- inst/doc/use_with_rcpp.html | 239 ---- man/GenPoissonBinomial-Distribution.Rd | 11 man/PoissonBinomial-Distribution.Rd | 7 man/PoissonBinomial-package.Rd | 11 src/PoissonBinomial.cpp | 645 ++++++------ vignettes/proc_approx.Rmd | 8 vignettes/proc_exact.Rmd | 16 23 files changed, 2264 insertions(+), 3137 deletions(-)
More information about PoissonBinomial at CRAN
Permanent link
Title: 'SQLite' Interface for R
Description: Embeds the 'SQLite' database engine in R and
provides an interface compliant with the 'DBI' package. The source for
the 'SQLite' engine is included.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
SQLite Authors [ctb] (for the included SQLite sources),
Liam Healy [ctb] (for the included SQLite sources),
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RSQLite versions 2.2.3 dated 2021-01-24 and 2.2.4 dated 2021-03-12
DESCRIPTION | 8 - MD5 | 27 ++--- NAMESPACE | 1 NEWS.md | 47 +++++---- R/RcppExports.R | 4 R/SQLiteConnection.R | 73 ++++++++++++++ build/vignette.rds |binary inst/doc/RSQLite.html | 196 ---------------------------------------- man/sqliteSetBusyHandler.Rd |only src/DbConnection.cpp | 40 +++++++- src/DbConnection.h | 6 + src/Makevars | 3 src/RcppExports.cpp | 12 ++ src/connection.cpp | 5 + tests/testthat/test-dbConnect.R | 63 ++++++++++++ 15 files changed, 253 insertions(+), 232 deletions(-)
Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via Three. JAGS types of models may be fitted: 1) With explanatory variables only, boral fits independent column Generalized Linear Models (GLMs) to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui [aut, cre],
Wade Blanchard [aut]
Maintainer: Francis K.C. Hui <fhui28@gmail.com>
Diff between boral versions 1.9 dated 2020-07-17 and 2.0 dated 2021-03-12
DESCRIPTION | 8 MD5 | 100 +++++----- NAMESPACE | 6 R/auxilaryfunctions.R | 110 ----------- R/boral.jags.R | 356 ++++++++++++++++++-------------------- R/calclogLfunctions.R | 38 +--- R/checkfunctions.R | 65 ++++++ R/coefsplot.R |only R/fittedboral.R |only R/getmeasures.R | 8 R/hpdintervals.R | 47 ++++- R/lvsplots.R | 45 ++-- R/makejagsboralmodel.R | 46 +++- R/makejagsboralnullmodel.R | 46 +++- R/plotboral.R | 71 ------- R/predictfn.R | 88 +++++++-- R/setup_respfamilies.R |only R/simdatafunctions.R | 132 +++++++++++--- R/summaryboral.R | 37 ++- R/tidyboral.R | 44 +++- R/unseenfunctions.R | 233 ++---------------------- R/varpart.R | 56 +++-- build/boral.pdf |binary build/partial.rdb |binary inst/NEWS.Rd | 14 - man/about.distributions.Rd | 12 - man/about.lvs.Rd | 24 +- man/about.ranefs.Rd |only man/about.ssvs.Rd | 20 +- man/about.traits.Rd | 14 - man/boral.Rd | 180 ++++++++++++------- man/calc.condlogLik.Rd | 30 +-- man/calc.logLik.lv0.Rd | 28 +- man/calc.marglogLik.Rd | 30 +-- man/calc.varpart.Rd | 61 ++++-- man/coefsplot.Rd | 58 +++++- man/create.life.Rd | 135 ++++++++------ man/ds.residuals.Rd | 10 - man/figures/lifecycle-defunct.svg |only man/fitted.boral.Rd | 15 - man/get.dic.Rd | 6 man/get.enviro.cor.Rd | 10 - man/get.hpdintervals.Rd | 104 +++++++---- man/get.measures.Rd | 16 - man/get.more.measures.Rd | 14 - man/get.residual.cor.Rd | 12 - man/lvsplot.Rd | 12 - man/make.jagsboralmodel.Rd | 45 ++-- man/make.jagsboralnullmodel.Rd | 41 ++-- man/plot.boral.Rd | 27 +- man/predict.boral.Rd | 89 ++++++--- man/ranefsplot.Rd |only man/summary.boral.Rd | 2 man/tidyboral.Rd | 33 ++- 54 files changed, 1389 insertions(+), 1189 deletions(-)
Title: Kiener Distributions and Fat Tails in Finance
Description: Kiener distributions K1, K2, K3, K4 and K7 to characterize
distributions with left and right, symmetric or asymmetric fat tails in market
finance, neuroscience and other disciplines. Two algorithms to estimate with
a high accuracy distribution parameters, quantiles, value-at-risk and expected
shortfall. Include power hyperbolas and power hyperbolic functions.
Author: Patrice Kiener [aut, cre] (<https://orcid.org/0000-0002-0505-9920>)
Maintainer: Patrice Kiener <fattailsr@inmodelia.com>
Diff between FatTailsR versions 1.7-5 dated 2017-05-16 and 1.8-0 dated 2021-03-12
DESCRIPTION | 27 - MD5 | 96 ++--- NAMESPACE | 422 +++++++++++++------------- NEWS | 20 - R/a_FatTailsR-package.R | 4 R/b_data.R | 4 R/f_kiener1.R | 6 R/g_kiener2.R | 6 R/h_kiener3.R | 6 R/i_kiener4.R | 6 R/j_kiener7.R | 6 R/n_estimation.R | 90 +++-- R/o_estimation2.R | 140 +++++--- man/FatTailsR.Rd | 396 ++++++++++++------------ man/aw2k.Rd | 314 +++++++++---------- man/checkcoefk.Rd | 64 +-- man/checkquantiles.Rd | 118 +++---- man/ckiener1234.Rd | 181 +++++------ man/dfData.Rd | 24 - man/dimdim.Rd | 124 +++---- man/elevate.Rd | 78 ++-- man/elevenprobs.Rd | 119 +++---- man/estimkiener11.Rd | 201 ++++++------ man/exfit0.Rd | 156 +++++---- man/exphp.Rd | 244 +++++++-------- man/extractData.Rd | 223 ++++++------- man/fatreturns.Rd | 141 ++++---- man/fitkienerX.Rd | 627 +++++++++++++++++++-------------------- man/getDSdata.Rd | 112 +++--- man/getnamesk.Rd | 100 +++--- man/kashp.Rd | 180 +++++------ man/kiener1.Rd | 645 ++++++++++++++++++++-------------------- man/kiener2.Rd | 715 ++++++++++++++++++++++---------------------- man/kiener3.Rd | 770 +++++++++++++++++++++++------------------------- man/kiener4.Rd | 764 +++++++++++++++++++++++------------------------ man/kiener7.Rd | 502 +++++++++++++++---------------- man/kmoments.Rd | 332 ++++++++++---------- man/laplacegaussnorm.Rd | 94 ++--- man/loghp.Rd | 252 +++++++-------- man/logishp.Rd | 328 ++++++++++---------- man/logit.Rd | 114 +++---- man/mData.Rd | 24 - man/pk2pk.Rd | 170 +++++----- man/pprobs0.Rd | 166 +++++----- man/regkienerLX.Rd | 550 +++++++++++++++++----------------- man/roundcoefk.Rd | 118 +++---- man/tData.Rd | 24 - man/xData.Rd | 24 - man/zData.Rd | 24 - 49 files changed, 4969 insertions(+), 4882 deletions(-)
Title: Biological Entity Dictionary (BED)
Description: An interface for the 'Neo4j' database providing
mapping between different identifiers of biological entities.
This Biological Entity Dictionary (BED)
has been developed to address three main challenges.
The first one is related to the completeness of identifier mappings.
Indeed, direct mapping information provided by the different systems
are not always complete and can be enriched by mappings provided by other
resources.
More interestingly, direct mappings not identified by any of these
resources can be indirectly inferred by using mappings to a third reference.
For example, many human Ensembl gene ID are not directly mapped to any
Entrez gene ID but such mappings can be inferred using respective mappings
to HGNC ID. The second challenge is related to the mapping of deprecated
identifiers. Indeed, entity identifiers can change from one resource
release to another. The identifier history is provided by some resources,
such as Ensembl or the NCBI, but it is generally not used by mapping tools.
The third challenge is related to the automation of the mapping process
according to the relationships between the biological entities of interest.
Indeed, mapping between gene and protein ID scopes should not be done
the same way than between two scopes regarding gene ID.
Also, converting identifiers from different organisms should be possible
using gene orthologs information.
A ready to use database is provided as
a 'Docker' image <https://hub.docker.com/r/patzaw/bed-ucb-human/>.
The method has been published by
Godard and van Eyll (2018) <doi:10.12688/f1000research.13925.3>.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between BED versions 1.4.3 dated 2021-01-05 and 1.4.4 dated 2021-03-12
DESCRIPTION | 8 MD5 | 22 R/convBeIds.R | 7 R/dumpUniprotDb.R | 292 + R/getBeIdConvTable.R | 11 build/vignette.rds |binary inst/doc/BED.R | 32 inst/doc/BED.Rmd | 38 inst/doc/BED.html | 7102 ++---------------------------------------------- man/convBeIds.Rd | 4 man/getBeIdConvTable.Rd | 4 vignettes/BED.Rmd | 38 12 files changed, 625 insertions(+), 6933 deletions(-)
Title: Simple Visualisation with 'ggplot2' and 'leaflet' Wrappers
Description: Support effortless high quality 'ggplot2' and 'leaflet' visualisations for reports or interactive 'shiny' apps through wrapping functions.
Author: David Hodge [aut, cre] (<https://orcid.org/0000-0002-3868-7501>),
Statistics New Zealand [cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between simplevis versions 2.0.0 dated 2020-09-01 and 2.4.0 dated 2021-03-12
simplevis-2.0.0/simplevis/R/er_helpers.R |only simplevis-2.0.0/simplevis/R/ggplot_scatter_fun.R |only simplevis-2.0.0/simplevis/data/example_sf_nz_livestock.rda |only simplevis-2.0.0/simplevis/data/example_sf_nz_river_wq.rda |only simplevis-2.0.0/simplevis/data/example_stars_nz_drp.rda |only simplevis-2.0.0/simplevis/data/example_stars_nz_no3n.rda |only simplevis-2.0.0/simplevis/man/example_sf_nz_livestock.Rd |only simplevis-2.0.0/simplevis/man/example_sf_nz_river_wq.Rd |only simplevis-2.0.0/simplevis/man/example_stars_nz_drp.Rd |only simplevis-2.0.0/simplevis/man/example_stars_nz_no3n.Rd |only simplevis-2.0.0/simplevis/man/ggplot_scatter.Rd |only simplevis-2.0.0/simplevis/man/ggplot_scatter_col.Rd |only simplevis-2.0.0/simplevis/man/ggplot_scatter_col_facet.Rd |only simplevis-2.0.0/simplevis/man/ggplot_scatter_facet.Rd |only simplevis-2.0.0/simplevis/man/pal_ea19.Rd |only simplevis-2.0.0/simplevis/man/pal_ea19_nof4.Rd |only simplevis-2.0.0/simplevis/man/pal_ea19_nof5.Rd |only simplevis-2.0.0/simplevis/man/pal_ea19_nztcs_c.Rd |only simplevis-2.0.0/simplevis/man/pal_ea19_trend2.Rd |only simplevis-2.0.0/simplevis/man/pal_ea19_trend3.Rd |only simplevis-2.0.0/simplevis/man/pal_ea19_trend5.Rd |only simplevis-2.0.0/simplevis/man/pal_point_trend2.Rd |only simplevis-2.0.0/simplevis/man/pal_point_trend3.Rd |only simplevis-2.0.0/simplevis/man/pal_point_trend5.Rd |only simplevis-2.0.0/simplevis/man/pal_snz_nof4.Rd |only simplevis-2.0.0/simplevis/man/pal_snz_nof5.Rd |only simplevis-2.0.0/simplevis/man/pal_snz_nztcs_c.Rd |only simplevis-2.0.0/simplevis/man/pal_snz_nztcs_s.Rd |only simplevis-2.0.0/simplevis/man/pal_snz_trend2.Rd |only simplevis-2.0.0/simplevis/man/pal_snz_trend3.Rd |only simplevis-2.0.0/simplevis/man/pal_snz_trend5.Rd |only simplevis-2.0.0/simplevis/man/signed_sqrt_trans.Rd |only simplevis-2.0.0/simplevis/man/theme_scatter.Rd |only simplevis-2.4.0/simplevis/DESCRIPTION | 18 simplevis-2.4.0/simplevis/MD5 | 185 -- simplevis-2.4.0/simplevis/NAMESPACE | 32 simplevis-2.4.0/simplevis/NEWS.md | 173 + simplevis-2.4.0/simplevis/R/data.R | 50 simplevis-2.4.0/simplevis/R/ggplot_box_fun.R | 364 ++-- simplevis-2.4.0/simplevis/R/ggplot_hbar_fun.R | 899 +++++----- simplevis-2.4.0/simplevis/R/ggplot_line_fun.R | 629 +++--- simplevis-2.4.0/simplevis/R/ggplot_point_fun.R |only simplevis-2.4.0/simplevis/R/ggplot_sf_fun.R | 493 ++--- simplevis-2.4.0/simplevis/R/ggplot_stars_fun.R | 480 +---- simplevis-2.4.0/simplevis/R/ggplot_vbar_fun.R | 837 +++++---- simplevis-2.4.0/simplevis/R/leaflet_sf_fun.R | 98 - simplevis-2.4.0/simplevis/R/leaflet_stars_fun.R | 30 simplevis-2.4.0/simplevis/R/other.R | 44 simplevis-2.4.0/simplevis/R/plotly.R | 5 simplevis-2.4.0/simplevis/README.md | 4 simplevis-2.4.0/simplevis/data/datalist | 11 simplevis-2.4.0/simplevis/data/example_sf_point.rda |only simplevis-2.4.0/simplevis/data/example_sf_polygon.rda |only simplevis-2.4.0/simplevis/data/example_stars.rda |only simplevis-2.4.0/simplevis/data/example_stars_2.rda |only simplevis-2.4.0/simplevis/data/nz_region.rda |only simplevis-2.4.0/simplevis/inst/doc/simplevis.R | 216 -- simplevis-2.4.0/simplevis/inst/doc/simplevis.Rmd | 262 -- simplevis-2.4.0/simplevis/inst/doc/simplevis.html | 438 +--- simplevis-2.4.0/simplevis/inst/shiny/template1/data/data.zip |only simplevis-2.4.0/simplevis/inst/shiny/template1/data/template1.zip |binary simplevis-2.4.0/simplevis/inst/shiny/template1/server.R | 6 simplevis-2.4.0/simplevis/inst/shiny/template1/www/style.css | 13 simplevis-2.4.0/simplevis/inst/shiny/template2/data/data.zip |only simplevis-2.4.0/simplevis/inst/shiny/template2/data/template2.zip |binary simplevis-2.4.0/simplevis/inst/shiny/template2/get_app_data.R | 2 simplevis-2.4.0/simplevis/inst/shiny/template2/global.R | 2 simplevis-2.4.0/simplevis/inst/shiny/template2/server.R | 8 simplevis-2.4.0/simplevis/inst/shiny/template2/www/style.css | 13 simplevis-2.4.0/simplevis/man/add_tip.Rd | 6 simplevis-2.4.0/simplevis/man/example_sf_point.Rd |only simplevis-2.4.0/simplevis/man/example_sf_polygon.Rd |only simplevis-2.4.0/simplevis/man/example_stars.Rd |only simplevis-2.4.0/simplevis/man/example_stars_2.Rd |only simplevis-2.4.0/simplevis/man/ggplot_box.Rd | 44 simplevis-2.4.0/simplevis/man/ggplot_box_facet.Rd | 38 simplevis-2.4.0/simplevis/man/ggplot_hbar.Rd | 42 simplevis-2.4.0/simplevis/man/ggplot_hbar_col.Rd | 64 simplevis-2.4.0/simplevis/man/ggplot_hbar_col_facet.Rd | 61 simplevis-2.4.0/simplevis/man/ggplot_hbar_facet.Rd | 58 simplevis-2.4.0/simplevis/man/ggplot_line.Rd | 34 simplevis-2.4.0/simplevis/man/ggplot_line_col.Rd | 48 simplevis-2.4.0/simplevis/man/ggplot_line_col_facet.Rd | 58 simplevis-2.4.0/simplevis/man/ggplot_line_facet.Rd | 43 simplevis-2.4.0/simplevis/man/ggplot_point.Rd |only simplevis-2.4.0/simplevis/man/ggplot_point_col.Rd |only simplevis-2.4.0/simplevis/man/ggplot_point_col_facet.Rd |only simplevis-2.4.0/simplevis/man/ggplot_point_facet.Rd |only simplevis-2.4.0/simplevis/man/ggplot_sf.Rd | 28 simplevis-2.4.0/simplevis/man/ggplot_sf_col.Rd | 46 simplevis-2.4.0/simplevis/man/ggplot_sf_col_facet.Rd | 48 simplevis-2.4.0/simplevis/man/ggplot_sf_facet.Rd | 38 simplevis-2.4.0/simplevis/man/ggplot_stars.Rd | 24 simplevis-2.4.0/simplevis/man/ggplot_stars_col.Rd | 28 simplevis-2.4.0/simplevis/man/ggplot_stars_col_facet.Rd | 37 simplevis-2.4.0/simplevis/man/ggplot_stars_facet.Rd | 37 simplevis-2.4.0/simplevis/man/ggplot_vbar.Rd | 40 simplevis-2.4.0/simplevis/man/ggplot_vbar_col.Rd | 50 simplevis-2.4.0/simplevis/man/ggplot_vbar_col_facet.Rd | 57 simplevis-2.4.0/simplevis/man/ggplot_vbar_facet.Rd | 48 simplevis-2.4.0/simplevis/man/leaflet_sf.Rd | 18 simplevis-2.4.0/simplevis/man/leaflet_sf_col.Rd | 24 simplevis-2.4.0/simplevis/man/leaflet_stars.Rd | 4 simplevis-2.4.0/simplevis/man/leaflet_stars_col.Rd | 4 simplevis-2.4.0/simplevis/man/numeric_legend_labels.Rd | 1 simplevis-2.4.0/simplevis/man/nz.Rd | 9 simplevis-2.4.0/simplevis/man/nz_region.Rd |only simplevis-2.4.0/simplevis/man/pal_point_set1.Rd | 10 simplevis-2.4.0/simplevis/man/pal_snz.Rd | 12 simplevis-2.4.0/simplevis/man/plotly_camera.Rd | 2 simplevis-2.4.0/simplevis/man/sentence_spaced_colnames.Rd | 1 simplevis-2.4.0/simplevis/man/theme_box.Rd | 5 simplevis-2.4.0/simplevis/man/theme_hbar.Rd | 6 simplevis-2.4.0/simplevis/man/theme_line.Rd | 6 simplevis-2.4.0/simplevis/man/theme_point.Rd |only simplevis-2.4.0/simplevis/man/theme_sf.Rd | 6 simplevis-2.4.0/simplevis/man/theme_stars.Rd | 6 simplevis-2.4.0/simplevis/man/theme_vbar.Rd | 6 simplevis-2.4.0/simplevis/vignettes/simplevis.Rmd | 262 -- 119 files changed, 3205 insertions(+), 3466 deletions(-)
Title: Tools for Data Diagnosis, Exploration, Transformation
Description: A collection of tools that support data diagnosis, exploration, and transformation.
Data diagnostics provides information and visualization of missing values and outliers and
unique and negative values to help you understand the distribution and quality of your data.
Data exploration provides information and visualization of the descriptive statistics of
univariate variables, normality tests and outliers, correlation of two variables, and
relationship between target variable and predictor. Data transformation supports binning
for categorizing continuous variables, imputates missing values and outliers, resolving skewness.
And it creates automated reports that support these three tasks.
Author: Choonghyun Ryu [aut, cre]
Maintainer: Choonghyun Ryu <choonghyun.ryu@gmail.com>
Diff between dlookr versions 0.4.2 dated 2021-02-12 and 0.4.3 dated 2021-03-12
DESCRIPTION | 19 +- MD5 | 30 ++-- NEWS | 267 ++++++++++++++++++++++-------------------- R/binning.R | 2 R/dlookr.R | 21 ++- R/missing.R | 6 inst/doc/EDA.html | 16 +- inst/doc/diagonosis.html | 4 inst/doc/introduce.html | 4 inst/doc/transformation.html | 54 +++----- inst/report/02_RunEDA.Rnw | 25 ++- inst/report/02_RunEDA_KR.Rnw | 25 ++- inst/report/EDA_Report.Rmd | 19 +- inst/report/EDA_Report_KR.Rmd | 21 +-- man/plot_na_hclust.Rd | 4 man/plot_na_intersect.Rd | 2 16 files changed, 277 insertions(+), 242 deletions(-)
Title: Search and Retrieve Data from the BC Data Catalogue
Description: Search, query, and download tabular and
'geospatial' data from the British Columbia Data Catalogue
(<https://catalogue.data.gov.bc.ca/>). Search catalogue data records
based on keywords, data licence, sector, data format, and B.C.
government organization. View metadata directly in R, download many
data formats, and query 'geospatial' data available via the B.C.
government Web Feature Service ('WFS') using 'dplyr' syntax.
Author: Andy Teucher [aut, cre] (<https://orcid.org/0000-0002-7840-692X>),
Sam Albers [aut, ctb] (<https://orcid.org/0000-0002-9270-7884>),
Stephanie Hazlitt [aut, ctb] (<https://orcid.org/0000-0002-3161-2304>),
Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gov.bc.ca>
Diff between bcdata versions 0.2.1 dated 2020-10-25 and 0.2.2 dated 2021-03-12
DESCRIPTION | 10 MD5 | 165 - NAMESPACE | 191 - NEWS.md | 149 - R/bcdata-package.R | 40 R/bcdc-web-services.R | 481 +-- R/bcdc_browse.R | 170 - R/bcdc_options.R | 162 - R/bcdc_search.R | 665 ++--- R/cql-geom-predicates.R | 540 ++-- R/cql-translator.R | 396 +-- R/describe-feature.R | 264 +- R/get_data.R | 514 ++-- R/utils-as_tibble.R | 44 R/utils-classes.R | 984 +++---- R/utils-collect.R | 44 R/utils-filter.R | 44 R/utils-is.R | 68 R/utils-mutate.R | 44 R/utils-pipe.R | 44 R/utils-select.R | 44 R/utils-show-query.R | 44 R/utils.R | 818 +++--- R/zzz.R | 42 README.md | 303 +- build/vignette.rds |binary inst/CITATION | 46 inst/doc/bcdata.Rmd | 898 +++---- inst/doc/bcdata.html | 1262 ++++------ inst/doc/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd | 872 +++--- inst/doc/efficiently-query-spatial-data-in-the-bc-data-catalogue.html | 1204 +++------ inst/doc/explore-silviculture-data-using-bcdata.Rmd | 620 ++-- inst/doc/explore-silviculture-data-using-bcdata.html | 1002 +++---- man/CQL.Rd | 48 man/bcdata-package.Rd | 88 man/bcdc_browse.Rd | 138 - man/bcdc_describe_feature.Rd | 92 man/bcdc_get_data.Rd | 214 - man/bcdc_get_record.Rd | 88 man/bcdc_list.Rd | 42 man/bcdc_list_group_records.Rd |only man/bcdc_options.Rd | 113 man/bcdc_preview.Rd | 78 man/bcdc_query_geodata.Rd | 175 - man/bcdc_read_functions.Rd | 28 man/bcdc_search.Rd | 108 man/bcdc_search_facets.Rd | 58 man/bcdc_tidy_resources.Rd | 80 man/collect-methods.Rd | 82 man/cql_geom_predicates.Rd | 138 - man/filter.Rd | 92 man/mutate.Rd | 76 man/pipe.Rd | 24 man/select.Rd | 110 man/show_query.Rd | 96 man/wfsConnection-class.Rd | 34 tests/testthat.R | 34 tests/testthat/helper-bcdata.R | 36 tests/testthat/setup.R | 52 tests/testthat/teardown.R | 26 tests/testthat/test-browse.R | 46 tests/testthat/test-cql-string.R | 194 - tests/testthat/test-describe-feature.R | 130 - tests/testthat/test-edge-cases.R | 34 tests/testthat/test-geom-operators.R | 274 +- tests/testthat/test-get-data.R | 343 +- tests/testthat/test-get_record.R | 241 + tests/testthat/test-options.R | 62 tests/testthat/test-print-methods.R | 114 tests/testthat/test-query-geodata-collect.R | 208 - tests/testthat/test-query-geodata-filter.R | 604 ++-- tests/testthat/test-query-geodata-head-tail.R | 120 tests/testthat/test-query-geodata-mutate.R | 46 tests/testthat/test-query-geodata-select.R | 164 - tests/testthat/test-query-geodata.R | 136 - tests/testthat/test-search.R | 54 tests/testthat/test-utils.R | 116 vignettes/bcdata.Rmd | 898 +++---- vignettes/bcdata.Rmd.orig | 424 +-- vignettes/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd | 872 +++--- vignettes/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd.orig | 440 +-- vignettes/explore-silviculture-data-using-bcdata.Rmd | 620 ++-- vignettes/explore-silviculture-data-using-bcdata.Rmd.orig | 440 +-- vignettes/precompile.R | 90 84 files changed, 10220 insertions(+), 10774 deletions(-)
Title: Exploratory Data Analysis System
Description: Performs an exploratory data analysis through a 'shiny' interface. It includes basic methods such as the mean, median, mode, normality test, among others. It also includes clustering techniques such as Principal Components Analysis, Hierarchical Clustering and the K-Means Method.
Author: Oldemar Rodriguez [aut, cre],
Diego Jiménez [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between discoveR versions 2.1.7 dated 2021-01-27 and 2.2.2 dated 2021-03-12
discoveR-2.1.7/discoveR/man/get_hist_data.Rd |only discoveR-2.1.7/discoveR/man/hc_cat.Rd |only discoveR-2.1.7/discoveR/man/hc_horiz.Rd |only discoveR-2.1.7/discoveR/man/hc_inercia.Rd |only discoveR-2.1.7/discoveR/man/hc_jambu.Rd |only discoveR-2.1.7/discoveR/man/hc_mapa.Rd |only discoveR-2.1.7/discoveR/man/hc_radar.Rd |only discoveR-2.1.7/discoveR/man/hc_silhouette.Rd |only discoveR-2.1.7/discoveR/man/hc_vert.Rd |only discoveR-2.1.7/discoveR/man/hchistboxplot.Rd |only discoveR-2.1.7/discoveR/man/hchistnormal.Rd |only discoveR-2.1.7/discoveR/man/hcpcabi.Rd |only discoveR-2.1.7/discoveR/man/hcpcaind.Rd |only discoveR-2.1.7/discoveR/man/hcpcavar.Rd |only discoveR-2.1.7/discoveR/man/hcqq.Rd |only discoveR-2.1.7/discoveR/man/plotly_mapa.Rd |only discoveR-2.1.7/discoveR/man/plotly_pcabi.Rd |only discoveR-2.1.7/discoveR/man/plotly_pcaind.Rd |only discoveR-2.1.7/discoveR/man/plotly_pcavar.Rd |only discoveR-2.2.2/discoveR/DESCRIPTION | 17 discoveR-2.2.2/discoveR/MD5 | 88 +- discoveR-2.2.2/discoveR/NAMESPACE | 60 - discoveR-2.2.2/discoveR/R/app_server.R | 3 discoveR-2.2.2/discoveR/R/app_ui.R | 6 discoveR-2.2.2/discoveR/R/mod_acercade.R | 7 discoveR-2.2.2/discoveR/R/mod_acp.R | 408 ++++-------- discoveR-2.2.2/discoveR/R/mod_acp_utils.R | 616 ++++++++----------- discoveR-2.2.2/discoveR/R/mod_cj.R | 112 +-- discoveR-2.2.2/discoveR/R/mod_cluster_utils.R | 576 ++++++++++------- discoveR-2.2.2/discoveR/R/mod_correlacion.R | 27 discoveR-2.2.2/discoveR/R/mod_correlacion_utils.R | 22 discoveR-2.2.2/discoveR/R/mod_dispersion.R | 87 -- discoveR-2.2.2/discoveR/R/mod_dispersion_utils.R | 42 - discoveR-2.2.2/discoveR/R/mod_distribuciones.R | 33 - discoveR-2.2.2/discoveR/R/mod_distribuciones_fct.R | 57 + discoveR-2.2.2/discoveR/R/mod_distribuciones_utils.R | 188 ++--- discoveR-2.2.2/discoveR/R/mod_kmedias.R | 130 +--- discoveR-2.2.2/discoveR/R/mod_kmedias_utils.R | 83 +- discoveR-2.2.2/discoveR/R/mod_normal.R | 18 discoveR-2.2.2/discoveR/R/mod_normal_utils.R | 81 -- discoveR-2.2.2/discoveR/man/addoutliersh.Rd |only discoveR-2.2.2/discoveR/man/e_boxplot.Rd |only discoveR-2.2.2/discoveR/man/e_cat.Rd |only discoveR-2.2.2/discoveR/man/e_histboxplot.Rd |only discoveR-2.2.2/discoveR/man/e_histnormal.Rd |only discoveR-2.2.2/discoveR/man/e_horiz.Rd |only discoveR-2.2.2/discoveR/man/e_inercia.Rd |only discoveR-2.2.2/discoveR/man/e_jambu.Rd |only discoveR-2.2.2/discoveR/man/e_mapa.Rd |only discoveR-2.2.2/discoveR/man/e_mapa_3D.Rd |only discoveR-2.2.2/discoveR/man/e_pcabi.Rd |only discoveR-2.2.2/discoveR/man/e_pcabi_3D.Rd |only discoveR-2.2.2/discoveR/man/e_pcaind.Rd |only discoveR-2.2.2/discoveR/man/e_pcaind_3D.Rd |only discoveR-2.2.2/discoveR/man/e_pcavar.Rd |only discoveR-2.2.2/discoveR/man/e_pcavar_3D.Rd |only discoveR-2.2.2/discoveR/man/e_qq.Rd |only discoveR-2.2.2/discoveR/man/e_radar.Rd |only discoveR-2.2.2/discoveR/man/e_silhouette.Rd |only discoveR-2.2.2/discoveR/man/e_vert.Rd |only discoveR-2.2.2/discoveR/man/listoutliers.Rd |only discoveR-2.2.2/discoveR/man/mod_acp_server.Rd | 5 discoveR-2.2.2/discoveR/man/mod_cj_server.Rd | 6 discoveR-2.2.2/discoveR/man/mod_dispersion_server.Rd | 5 discoveR-2.2.2/discoveR/man/mod_kmedias_server.Rd | 6 65 files changed, 1226 insertions(+), 1457 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-11 1.8.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-20 0.2.0
2019-10-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-14 0.0.1.3
Title: Effect + Residual Modelling
Description: Multivariate modeling of data after deflation of interfering effects. EF Mosleth et al. (2021) <doi:10.1038/s41598-021-82388-w> and EF Mosleth et al. (2020) <doi:10.1016/B978-0-12-409547-2.14882-6>.
Author: Kristian Hovde Liland [aut, cre],
Ellen Færgestad Mosleth [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between ER versions 1.0.2 dated 2020-09-11 and 1.1.0 dated 2021-03-12
DESCRIPTION | 14 +++--- MD5 | 29 +++++++------ NAMESPACE | 1 NEWS |only R/ER.R | 113 ++++++++++++++++++++++++++++++++++++++++++++++-------- R/confints.R | 31 ++++++++++++-- R/datasets.R | 36 ++++++++++++++++- R/elastic.R | 23 ++++++++++ R/pls.R | 28 +++++++++++++ data/Diabetes.rda |binary data/MS.rda |only man/Diabetes.Rd | 2 man/ER.Rd | 80 +++++++++++++++++++++++++++++++++++--- man/MS.Rd |only man/confints.Rd | 25 ++++++++++- man/elastic.Rd | 24 +++++++++++ man/pls.Rd | 30 ++++++++++++++ 17 files changed, 386 insertions(+), 50 deletions(-)