Title: Representation of DET Curve with Confidence Intervals
Description: Builds both ROC (Receiver Operating Characteristic) and DET (Detection Error Tradeoff) curves from a set of predictors, which are the
results of a binary classification system. The curves give a general vision of the performance of the classifier,
and are useful for comparing performance of different systems.
Author: García-Ródenas, Álvaro [aut, cre],
Franco, Manuel [aut],
Vivo, Juana-María [aut],
Fernández-Breis, Jesualdo T. [aut],
Font, Roberto [aut]
Maintainer: "García-Ródenas, Álvaro" <alvaro.garcia9@um.es>
Diff between DET versions 3.0.0 dated 2021-04-01 and 3.0.1 dated 2021-04-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/detc.R | 6 ++++-- man/detc.Rd | 3 ++- man/detc.ci.Rd | 3 ++- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Survey Sampling Procedures
Description: Sampling procedures from the book 'Stichproben - Methoden und praktische Umsetzung mit R' by Goeran Kauermann and Helmut Kuechenhoff (2010).
Author: Juliane Manitz [aut,cre], Mark Hempelmann [ctb], Goeran Kauermann [ctb], Helmut Kuechenhoff [aut], Shuai Shao [ctb], Cornelia Oberhauser [ctb], Nina Westerheide [ctb], Manuel Wiesenfarth [ctb]
Maintainer: Juliane Manitz <r@manitz.org>
Diff between samplingbook versions 1.2.2 dated 2017-05-22 and 1.2.4 dated 2021-04-02
DESCRIPTION | 26 +-- MD5 | 67 +++++---- R/Smean.R | 90 ++++++------ R/Sprop.R | 194 +++++++++++++------------- R/htestimate.R | 134 +++++++++--------- R/mbes.R | 328 ++++++++++++++++++++++----------------------- R/pps.sampling.R | 128 ++++++++--------- R/print.Smean.R | 22 +-- R/print.Sprop.R | 52 +++---- R/print.htestimate.R | 22 +-- R/print.mbes.R | 82 +++++------ R/print.pps.sampling.R | 34 ++-- R/print.sample.size.mean.R | 18 +- R/print.sample.size.prop.R | 18 +- R/print.stratamean.R | 24 +-- R/print.stratasize.R | 16 +- R/print.submean.R | 26 +-- R/sample.size.mean.R | 66 ++++----- R/sample.size.prop.R | 72 ++++----- R/stratamean.R | 192 +++++++++++++------------- R/stratasamp.R | 158 ++++++++++----------- R/stratasize.R | 100 ++++++------- R/submean.R | 212 ++++++++++++++--------------- README.md |only build |only inst |only man/stratamean.Rd | 94 ++++++------ man/stratasamp.Rd | 58 +++---- man/stratasize.Rd | 66 ++++----- man/submean.Rd | 98 ++++++------- man/tax.Rd | 66 ++++----- man/wage.Rd | 64 ++++---- tests |only vignettes |only 34 files changed, 1267 insertions(+), 1260 deletions(-)
Title: Measuring Information Flow Between Time Series with Shannon and
Renyi Transfer Entropy
Description: Measuring information flow between time series with Shannon and Rényi transfer entropy. See also Dimpfl and Peter (2013) <doi:10.1515/snde-2012-0044> and Dimpfl and Peter (2014) <doi:10.1016/j.intfin.2014.03.004> for theory and applications to financial time series. Additional references can be found in the theory part of the vignette.
Author: David Zimmermann [aut, cre],
Simon Behrendt [aut],
Thomas Dimpfl [aut],
Franziska Peter [aut]
Maintainer: David Zimmermann <david_j_zimmermann@hotmail.com>
Diff between RTransferEntropy versions 0.2.13 dated 2020-12-17 and 0.2.14 dated 2021-04-02
DESCRIPTION | 8 MD5 | 44 NAMESPACE | 38 R/RcppExports.R | 30 R/bootstrap_renyi.R | 4 R/bootstrap_shannon.R | 4 R/te_renyi.R | 7 R/te_shannon.R | 6 R/transfer_entropy.R | 2 README.md | 706 +++++-------- build/vignette.rds |binary inst/doc/transfer-entropy.R | 668 ++++++------- inst/doc/transfer-entropy.html | 1690 +++++++++++++-------------------- man/calc_ete.Rd | 226 ++-- man/calc_te.Rd | 222 ++-- man/coef.transfer_entropy.Rd | 72 - man/is.transfer_entropy.Rd | 40 man/print.transfer_entropy.Rd | 168 +-- man/set_quiet.Rd | 40 man/stocks.Rd | 52 - man/summary.transfer_entropy.Rd | 86 - man/transfer_entropy.Rd | 282 ++--- tests/testthat/test.transfer_entropy.R | 400 +++---- 23 files changed, 2179 insertions(+), 2616 deletions(-)
More information about RTransferEntropy at CRAN
Permanent link
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre],
Mike Johnson [ctb] (<https://orcid.org/0000-0002-5288-8350>)
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 0.3.16 dated 2020-11-13 and 0.4.0 dated 2021-04-02
nhdplusTools-0.3.16/nhdplusTools/inst/extdata/new_hope.gpkg |only nhdplusTools-0.3.16/nhdplusTools/inst/extdata/new_hope_wbd.gpkg |only nhdplusTools-0.3.16/nhdplusTools/inst/extdata/petapsco_flowlines.gpkg |only nhdplusTools-0.3.16/nhdplusTools/inst/extdata/sample_natseamless.gpkg |only nhdplusTools-0.3.16/nhdplusTools/inst/extdata/walker.gpkg |only nhdplusTools-0.3.16/nhdplusTools/man/discover_nldi_navigation.Rd |only nhdplusTools-0.3.16/nhdplusTools/man/discover_nldi_sources.Rd |only nhdplusTools-0.4.0/nhdplusTools/DESCRIPTION | 19 nhdplusTools-0.4.0/nhdplusTools/MD5 | 165 +- nhdplusTools-0.4.0/nhdplusTools/NAMESPACE | 211 +- nhdplusTools-0.4.0/nhdplusTools/NEWS.md | 37 nhdplusTools-0.4.0/nhdplusTools/R/downloading_tools.R | 333 ++-- nhdplusTools-0.4.0/nhdplusTools/R/geoserver_tools.R |only nhdplusTools-0.4.0/nhdplusTools/R/get_geometry.R | 95 - nhdplusTools-0.4.0/nhdplusTools/R/get_hydro.R |only nhdplusTools-0.4.0/nhdplusTools/R/get_network.R | 698 ++++----- nhdplusTools-0.4.0/nhdplusTools/R/get_nhdplus.R | 304 +--- nhdplusTools-0.4.0/nhdplusTools/R/get_nhdplushr.R | 719 +++++----- nhdplusTools-0.4.0/nhdplusTools/R/get_nldi.R | 563 +++---- nhdplusTools-0.4.0/nhdplusTools/R/get_paths.R | 233 ++- nhdplusTools-0.4.0/nhdplusTools/R/get_vaa.R |only nhdplusTools-0.4.0/nhdplusTools/R/index_nhdplus.R | 30 nhdplusTools-0.4.0/nhdplusTools/R/nhdplusTools.R | 535 +++---- nhdplusTools-0.4.0/nhdplusTools/R/plot_nhdplus.R | 27 nhdplusTools-0.4.0/nhdplusTools/R/prep_nhdplus.R | 282 ++- nhdplusTools-0.4.0/nhdplusTools/R/subset_nhdplus.R | 103 + nhdplusTools-0.4.0/nhdplusTools/README.md | 363 ++--- nhdplusTools-0.4.0/nhdplusTools/build/vignette.rds |binary nhdplusTools-0.4.0/nhdplusTools/inst/doc/nhdplusTools.R | 336 ++-- nhdplusTools-0.4.0/nhdplusTools/inst/doc/nhdplusTools.Rmd | 702 ++++----- nhdplusTools-0.4.0/nhdplusTools/inst/doc/nhdplusTools.html | 674 ++++----- nhdplusTools-0.4.0/nhdplusTools/inst/doc/nhdplushr.R | 191 +- nhdplusTools-0.4.0/nhdplusTools/inst/doc/nhdplushr.Rmd | 381 ++--- nhdplusTools-0.4.0/nhdplusTools/inst/doc/nhdplushr.html | 507 +++---- nhdplusTools-0.4.0/nhdplusTools/inst/doc/plot_nhdplus.R | 274 +-- nhdplusTools-0.4.0/nhdplusTools/inst/doc/plot_nhdplus.Rmd | 28 nhdplusTools-0.4.0/nhdplusTools/inst/doc/plot_nhdplus.html | 534 ++----- nhdplusTools-0.4.0/nhdplusTools/inst/doc/point_indexing.R | 250 +-- nhdplusTools-0.4.0/nhdplusTools/inst/doc/point_indexing.Rmd | 416 ++--- nhdplusTools-0.4.0/nhdplusTools/inst/doc/point_indexing.html | 526 +++---- nhdplusTools-0.4.0/nhdplusTools/inst/extdata/new_hope_data.R | 43 nhdplusTools-0.4.0/nhdplusTools/inst/extdata/nhdplushr_data.R | 66 nhdplusTools-0.4.0/nhdplusTools/inst/extdata/sample_data.R |only nhdplusTools-0.4.0/nhdplusTools/inst/extdata/sample_flines.R |only nhdplusTools-0.4.0/nhdplusTools/inst/extdata/utils.R |only nhdplusTools-0.4.0/nhdplusTools/inst/extdata/walker_data.R | 33 nhdplusTools-0.4.0/nhdplusTools/man/discover_nhdplus_id.Rd | 64 nhdplusTools-0.4.0/nhdplusTools/man/discover_nldi_characteristics.Rd | 4 nhdplusTools-0.4.0/nhdplusTools/man/download_vaa.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/download_wbd.Rd | 62 nhdplusTools-0.4.0/nhdplusTools/man/get_DD.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/get_DM.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/get_UM.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/get_UT.Rd | 4 nhdplusTools-0.4.0/nhdplusTools/man/get_flowline_index.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/get_gagesII.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_huc12.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_huc8.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_levelpaths.Rd | 110 - nhdplusTools-0.4.0/nhdplusTools/man/get_nhdarea.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_nhdplus.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_nhdplushr.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/get_nldi_basin.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/get_nldi_characteristics.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/get_nldi_feature.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/get_node.Rd | 7 nhdplusTools-0.4.0/nhdplusTools/man/get_nwis.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_vaa.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_vaa_names.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_vaa_path.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_waterbodies.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/get_waterbody_index.Rd | 8 nhdplusTools-0.4.0/nhdplusTools/man/navigate_nldi.Rd | 18 nhdplusTools-0.4.0/nhdplusTools/man/plot_nhdplus.Rd | 3 nhdplusTools-0.4.0/nhdplusTools/man/prepare_nhdplus.Rd | 9 nhdplusTools-0.4.0/nhdplusTools/man/query_usgs_geoserver.Rd |only nhdplusTools-0.4.0/nhdplusTools/man/stage_national_data.Rd | 6 nhdplusTools-0.4.0/nhdplusTools/man/subset_nhdplus.Rd | 301 ++-- nhdplusTools-0.4.0/nhdplusTools/man/subset_rpu.Rd | 4 nhdplusTools-0.4.0/nhdplusTools/tests/testthat/data/reweight_test.rds |only nhdplusTools-0.4.0/nhdplusTools/tests/testthat/helper.R | 36 nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_calc_network.R | 63 nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_get_functions.R |only nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_get_geometry.R | 44 nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_get_network.R | 521 +++---- nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_get_nhdplus.R | 131 - nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_get_nldi.R | 299 ++-- nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_get_path.R |only nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_get_vaa.R |only nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_index.R | 209 +- nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_nhdplusTools.R | 255 +-- nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_plot_nhdplus.R | 21 nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_subset.R | 689 ++++----- nhdplusTools-0.4.0/nhdplusTools/tests/testthat/test_wb_index.R | 90 - nhdplusTools-0.4.0/nhdplusTools/vignettes/nhdplusTools.Rmd | 702 ++++----- nhdplusTools-0.4.0/nhdplusTools/vignettes/nhdplushr.Rmd | 381 ++--- nhdplusTools-0.4.0/nhdplusTools/vignettes/plot_nhdplus.Rmd | 28 nhdplusTools-0.4.0/nhdplusTools/vignettes/point_indexing.Rmd | 416 ++--- 98 files changed, 7056 insertions(+), 7155 deletions(-)
Title: Multiple Imputation Using Weighted Quantile Sum Regression
Description: The miWQS package handles the uncertainty due to below the detection limit in a correlated component mixture problem. Researchers want to determine if a set/mixture of continuous and correlated components/chemicals is associated with an outcome and if so, which components are important in that mixture. These components share a common outcome but are interval-censored between zero and low thresholds, or detection limits, that may be different across the components. This package applies the multiple imputation (MI) procedure to the weighted quantile sum regression (WQS) methodology for continuous, binary, or count outcomes (Hargarten & Wheeler (2020) <doi:10.1016/j.envres.2020.109466>). The imputation models are: bootstrapping imputation (Lubin et.al (2004) <doi:10.1289/ehp.7199>), univariate Bayesian imputation (Hargarten & Wheeler (2020) <doi:10.1016/j.envres.2020.109466>), and multivariate Bayesian regression imputation.
Author: Paul M. Hargarten [aut, cre],
David C. Wheeler [aut, rev, ths]
Maintainer: Paul M. Hargarten <hargartenp@alumni.vcu.edu>
Diff between miWQS versions 0.4.2 dated 2021-01-21 and 0.4.4 dated 2021-04-02
DESCRIPTION | 14 ++--- MD5 | 14 ++--- NEWS.md | 21 +++++++- R/head_array.R | 2 R/impute_univariate_bayesian_imputation_stage1.R | 2 R/make_quantile_matrix_WQS.R | 57 +++++++++++++++++------ inst/WORDLIST | 5 -- inst/doc/README.pdf |binary 8 files changed, 80 insertions(+), 35 deletions(-)
Title: A 'HTTP' Server Graphics Device
Description: A graphics device for R that is accessible via network protocols.
This package was created to make it easier to embed live R graphics in
integrated development environments and other applications.
The included 'HTML/JavaScript' client (plot viewer) aims to provide a better overall user experience when dealing with R graphics.
The device asynchronously serves 'SVG' graphics via 'HTTP' and 'WebSockets'.
Author: Florian Rupprecht [aut, cre] (<https://orcid.org/0000-0002-1795-8624>),
Kun Ren [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Hadley Wickham [cph] (Author of included svglite code),
Lionel Henry [cph] (Author of included svglite code),
Thomas Lin Pedersen [cph] (Author and creator of included svglite code),
T Jake Luciani [cph] (Author of included svglite code),
Matthieu Decorde [cph] (Author of included svglite code),
Vaudor Lise [cph] (Author of included svglite code),
Tony Plate [cph] (Contributor to included svglite code),
David Gohel [cph] (Contributor to included svglite code),
Yixuan Qiu [cph] (Contributor to included svglite code),
Håkon Malmedal [cph] (Contributor to included svglite code),
RStudio [cph] (Copyright holder of included svglite code),
Brett Robinson [cph] (Author of included belle library),
Google [cph] (Copyright holder of included material design icons),
Victor Zverovich [cph] (Author of included fmt library)
Maintainer: Florian Rupprecht <floruppr@gmail.com>
Diff between httpgd versions 1.1.0 dated 2021-04-01 and 1.1.1 dated 2021-04-02
DESCRIPTION | 6 MD5 | 18 - NEWS.md | 5 R/httpgd.R | 7 build/vignette.rds |binary inst/doc/api-documentation.html | 530 ++++++++++++++++++++-------------------- inst/www/index.html | 11 inst/www/style.css | 6 man/hgd_url.Rd | 5 src/DrawData.cpp | 2 10 files changed, 314 insertions(+), 276 deletions(-)
Title: Prepare Reproducible Example Code via the Clipboard
Description: Convenience wrapper that uses the 'rmarkdown'
package to render small snippets of code to target formats that
include both code and output. The goal is to encourage the sharing of
small, reproducible, and runnable examples on code-oriented websites,
such as <https://stackoverflow.com> and <https://github.com>, or in
email. The user's clipboard is the default source of input code and
the default target for rendered output. 'reprex' also extracts clean,
runnable R code from various common formats, such as copy/paste from
an R session.
Author: Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
David Robinson [aut],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between reprex versions 1.0.0 dated 2021-01-27 and 2.0.0 dated 2021-04-02
DESCRIPTION | 18 +- MD5 | 91 +++++++------ NEWS.md | 72 ++++++++++ R/aaa.R |only R/ensure.R | 6 R/highlight.R | 10 - R/prex.R | 30 +--- R/reprex-addin.R | 24 +-- R/reprex-locale.R | 13 + R/reprex-options.R | 7 - R/reprex-undo.R | 182 +++++++++++---------------- R/reprex.R | 101 +++++++-------- R/reprex_document.R | 147 +++++++++++---------- R/reprex_impl.R | 97 ++++++-------- R/reprex_render.R | 199 ++++++++++++++++++----------- R/sysdata.rda |only R/utils-clipboard.R |only R/utils-interactivity.R | 11 - R/utils-io.R | 228 +++++++++++++++++++++++++++------- R/utils-ui.R | 12 + R/utils.R | 58 ++------ README.md | 18 +- inst/WORDLIST | 5 inst/doc/reprex-dos-and-donts.html | 10 + man/reprex.Rd | 92 ++++++------- man/reprex_addin.Rd | 1 man/reprex_document.Rd | 10 - man/reprex_locale.Rd | 10 + man/reprex_options.Rd | 7 - man/un-reprex.Rd | 110 +++++++--------- tests/testthat.R | 2 tests/testthat/_snaps/input.md | 53 +++++++ tests/testthat/_snaps/rprofile.md |only tests/testthat/_snaps/utils-io.md |only tests/testthat/_snaps/utils-ui.md | 7 - tests/testthat/helper.R | 38 +---- tests/testthat/setup.R |only tests/testthat/test-env.R | 15 +- tests/testthat/test-filepaths.R | 59 +++++--- tests/testthat/test-input.R | 37 ++--- tests/testthat/test-outfiles.R | 140 ++++++++------------ tests/testthat/test-pandoc.R | 5 tests/testthat/test-reprex-addin.R |only tests/testthat/test-reprex_impl.R |only tests/testthat/test-reprex_render.R | 43 ++++++ tests/testthat/test-rprofile.R |only tests/testthat/test-undo.R | 40 +---- tests/testthat/test-utils-clipboard.R |only tests/testthat/test-utils-io.R |only tests/testthat/test-utils-ui.R | 5 tests/testthat/test-utils.R | 21 ++- vignettes/articles/rtf.Rmd | 2 52 files changed, 1159 insertions(+), 877 deletions(-)
Title: Analyze Group Patterns using Graph Theory in Educational
Settings
Description: Analyzes group patterns using discourse analysis data with graph theory mathematics. Takes the order of which individuals talk and converts it to a network edge and weight list. Returns the density, centrality, centralization, and subgroup information for each group. Based on the analytical framework laid out in Chai et al. (2019) <doi:10.1187/cbe.18-11-0222>.
Author: Albert Chai [aut],
Andrew Lee [aut],
Joshua Le [aut, cre],
Katherine Ly [ctb],
Kevin Banh [ctb],
Priya Pahal [ctb],
Stanley Lo [aut]
Maintainer: Joshua Le <jpl038@ucsd.edu>
Diff between discourseGT versions 1.1.4 dated 2021-02-17 and 1.1.5 dated 2021-04-02
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/attributeData.R | 4 ++-- R/basicPlot.R | 26 ++++++++++++++++++++------ R/plotNGTData.R | 10 +--------- R/sampleData1.R | 4 ++-- data/attributeData.rda |binary data/sampleData1.rda |binary man/attributeData.Rd | 4 ++-- man/basicPlot.Rd | 11 +++++++---- man/sampleData1.Rd | 4 ++-- 11 files changed, 51 insertions(+), 42 deletions(-)
Title: 'RStudio' Addin for Editing a 'data.frame'
Description: An 'RStudio' addin for editing a 'data.frame' or a 'tibble'. You can delete, add or update a 'data.frame'
without coding. You can get resultant data as a 'data.frame'. In the package, modularized 'shiny' app codes are provided.
These modules are intended for reuse across applications.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between editData versions 0.1.2 dated 2017-10-07 and 0.1.8 dated 2021-04-02
editData-0.1.2/editData/R/editableDT2.R |only editData-0.1.8/editData/DESCRIPTION | 12 - editData-0.1.8/editData/MD5 | 63 ++++--- editData-0.1.8/editData/NAMESPACE | 31 ++- editData-0.1.8/editData/NEWS.md | 51 +++++ editData-0.1.8/editData/R/editData.R |only editData-0.1.8/editData/R/editFiles.R |only editData-0.1.8/editData/R/editableDT.R |only editData-0.1.8/editData/R/myget.R |only editData-0.1.8/editData/R/textInput3.R | 24 ++ editData-0.1.8/editData/README.md | 19 +- editData-0.1.8/editData/build/vignette.rds |binary editData-0.1.8/editData/inst/doc/editData.R | 25 +- editData-0.1.8/editData/inst/doc/editData.Rmd | 20 +- editData-0.1.8/editData/inst/doc/editData.html | 207 +++++++++++++++-------- editData-0.1.8/editData/inst/example/app.R | 19 +- editData-0.1.8/editData/inst/multipleData/app.R | 26 +- editData-0.1.8/editData/inst/multipleFiles/app.R | 25 +- editData-0.1.8/editData/inst/multipleFiles2 |only editData-0.1.8/editData/man/editData.Rd | 6 editData-0.1.8/editData/man/editFiles.Rd |only editData-0.1.8/editData/man/editableDT.Rd | 15 - editData-0.1.8/editData/man/editableDTUI.Rd | 45 ++--- editData-0.1.8/editData/man/figures/1.png |binary editData-0.1.8/editData/man/figures/2.png |binary editData-0.1.8/editData/man/figures/3.png |binary editData-0.1.8/editData/man/figures/4.png |binary editData-0.1.8/editData/man/figures/5.png |binary editData-0.1.8/editData/man/figures/6.png |binary editData-0.1.8/editData/man/figures/7.png |only editData-0.1.8/editData/man/file2ext.Rd |only editData-0.1.8/editData/man/myget.Rd |only editData-0.1.8/editData/man/myimport.Rd |only editData-0.1.8/editData/man/numericInput3.Rd | 12 + editData-0.1.8/editData/man/pickerInput3.Rd |only editData-0.1.8/editData/man/radioButtons3.Rd | 12 + editData-0.1.8/editData/man/sampleData.Rd | 6 editData-0.1.8/editData/man/selectizeInput3.Rd |only editData-0.1.8/editData/vignettes/editData.Rmd | 20 +- 39 files changed, 425 insertions(+), 213 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
The package does not require any installation of Microsoft products to be able to write Microsoft
files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] (function body_replace_all_text),
Liz Sander [ctb] (several documentation fixes),
Anton Victorson [ctb] (fixes xml structures),
Jon Calder [ctb] (update vignettes),
John Harrold [ctb] (function annotate_base),
John Muschelli [ctb] (google doc compatibility)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.3.17 dated 2021-03-05 and 0.3.18 dated 2021-04-02
DESCRIPTION | 7 ++---- MD5 | 12 +++++----- NEWS.md | 9 +++++++ R/docx_section.R | 57 +++++++++++++++++++++++++++++++++++++++----------- R/ooxml_run_objects.R | 2 - R/utils.R | 4 +-- man/run_autonum.Rd | 2 - 7 files changed, 67 insertions(+), 26 deletions(-)
Title: List Comprehension for R
Description: Syntactic shortcuts for creating synthetic lists, vectors, and
data frames using list comprehension.
Author: Patrick Roocks <mail@p-roocks.de>
Maintainer: Patrick Roocks <mail@p-roocks.de>
Diff between listcompr versions 0.1.0 dated 2021-01-13 and 0.2.0 dated 2021-04-02
DESCRIPTION | 11 -- MD5 | 24 ++-- NAMESPACE | 1 NEWS.md | 10 + R/gen-list.r | 154 ++++++++++++++++++++++------- README.md | 6 - inst/doc/introduction.R | 18 ++- inst/doc/introduction.Rmd | 48 ++++++--- inst/doc/introduction.html | 234 +++++++++++++++++++++++++++++++++------------ man/gen.list.Rd | 35 ++++-- man/gen.list.char.Rd | 2 tests/testthat/testbase.r | 33 +++++- vignettes/introduction.Rmd | 48 ++++++--- 13 files changed, 445 insertions(+), 179 deletions(-)
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Creates matrix population models for use in population ecological
analyses. Specializes on the construction of historical matrices,
which are 2d matrices comprising 3 consecutive times of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. It also estimates
function-based age-by-stage matrices. Methodology based on Ehrlen
(2000) <doi:10.1890/0012-9658(2000)081[1675:TDOPPD]2.0.CO;2>.
Author: Richard P. Shefferson [aut, cre]
(<https://orcid.org/0000-0002-5234-3131>),
Johan Ehrlen [aut] (<https://orcid.org/0000-0001-8539-8967>)
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 3.3.2 dated 2021-02-26 and 3.4.0 dated 2021-04-02
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Title: Hierarchical Climate Regionalization
Description: A tool for Hierarchical Climate Regionalization applicable to any correlation-based clustering.
It adds several features and a new clustering method (called, 'regional' linkage) to hierarchical
clustering in R ('hclust' function in 'stats' library): data regridding, coarsening spatial resolution,
geographic masking, contiguity-constrained clustering, data filtering by mean and/or variance
thresholds, data preprocessing (detrending, standardization, and PCA), faster correlation function
with preliminary big data support, different clustering methods, hybrid hierarchical clustering,
multivariate clustering (MVC), cluster validation, visualization of regionalization results, and
exporting region map and mean timeseries into NetCDF-4 file.
The technical details are described in Badr et al. (2015) <doi:10.1007/s12145-015-0221-7>.
Author: Hamada S. Badr [aut, cre] (<https://orcid.org/0000-0002-9808-2344>),
Benjamin F. Zaitchik [aut] (<https://orcid.org/0000-0002-0698-0658>),
Amin K. Dezfuli [aut] (<https://orcid.org/0000-0003-3274-8542>)
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between HiClimR versions 2.1.8 dated 2021-01-05 and 2.1.9 dated 2021-04-02
DESCRIPTION | 12 +- MD5 | 18 ++-- NAMESPACE | 24 +++-- NEWS.md | 8 + R/HiClimR.R | 8 + README.md | 66 +++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 12 ++ inst/doc/BugReports.html | 206 +---------------------------------------------- 10 files changed, 97 insertions(+), 257 deletions(-)
Title: Authenticate and Create Google APIs
Description: Create R functions that interact with OAuth2 Google APIs
<https://developers.google.com/apis-explorer/> easily,
with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut, cre] (<https://orcid.org/0000-0002-8434-3881>),
Jennifer Bryan [ctb],
Johann deBoer [ctb],
Neal Richardson [ctb],
David Kulp [ctb],
Joe Cheng [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAuthR versions 1.3.1 dated 2020-12-05 and 1.4.0 dated 2021-04-02
DESCRIPTION | 11 MD5 | 47 - NEWS.md | 8 R/auto_auth.R | 31 R/batch.R | 259 ++++---- R/generator.R | 3 R/memoise.R | 17 R/new_batch.R |only R/options.R | 2 R/service_creation.R | 40 + R/set_client.R | 2 R/setup_wizard.R | 29 R/setup_wizard_auth.R | 36 - README.md | 8 inst/doc/advanced-building.html | 650 +++++++------------- inst/doc/building.html | 660 +++++++-------------- inst/doc/google-authentication-types.Rmd | 52 - inst/doc/google-authentication-types.html | 932 ++++++++++++------------------ inst/doc/setup.html | 230 ------- inst/doc/troubleshooting.html | 240 ------- man/gar_auto_auth.Rd | 13 man/gar_batch.Rd | 4 man/gar_service_create.Rd | 23 man/gar_setup_auth_check.Rd | 7 vignettes/google-authentication-types.Rmd | 52 - 25 files changed, 1252 insertions(+), 2104 deletions(-)
Title: Methods for Calculating Gradient Surface Metrics
Description: Methods for calculating gradient surface metrics for
continuous analysis of landscape features.
Author: Annie C. Smith, Phoebe Zarnetske, Kyla Dahlin, Adam Wilson, Andrew Latimer
Maintainer: Annie C. Smith <annie.smith@dnr.wa.gov>
Diff between geodiv versions 1.0.0 dated 2021-03-30 and 1.0.1 dated 2021-04-02
DESCRIPTION | 9 ++++----- MD5 | 18 +++++++++--------- NEWS.md | 6 +++++- R/movingwindow.R | 4 ++-- R/utilities.R | 2 +- README.md | 5 +++++ inst/doc/geodiv_vignette.Rmd | 30 +++++++++++++++++++++--------- inst/doc/geodiv_vignette.html | 29 ++++++++++++++++++----------- man/bestfitplane.Rd | 2 +- vignettes/geodiv_vignette.Rmd | 30 +++++++++++++++++++++--------- 10 files changed, 87 insertions(+), 48 deletions(-)
Title: Recurrent Event Data Analysis
Description: Contains implementations of recurrent event data analysis routines
including (1) survival and recurrent event data simulation from
stochastic process point of view by the thinning method
proposed by Lewis and Shedler (1979) <doi:10.1002/nav.3800260304>
and the inversion method introduced in Cinlar (1975, ISBN:978-0486497976),
(2) the mean cumulative function (MCF) estimation by the
Nelson-Aalen estimator of the cumulative hazard rate function,
(3) two-sample recurrent event responses comparison with the pseudo-score
tests proposed by Lawless and Nadeau (1995) <doi:10.2307/1269617>,
(4) gamma frailty model with spline rate function following
Fu, et al. (2016) <doi:10.1080/10543406.2014.992524>.
Author: Wenjie Wang [aut, cre] (<https://orcid.org/0000-0003-0363-3180>),
Haoda Fu [aut],
Sy Han (Steven) Chiou [ctb],
Jun Yan [ctb] (<https://orcid.org/0000-0003-4401-7296>)
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between reda versions 0.5.2 dated 2020-07-08 and 0.5.3 dated 2021-04-02
DESCRIPTION | 13 MD5 | 91 +- NAMESPACE | 2 NEWS.md | 14 R/RcppExports.R | 21 R/Recur.R | 288 +++--- R/Survr.R | 2 R/aic.R | 2 R/baseline.R | 2 R/class.R | 40 R/coef.R | 2 R/data.R | 2 R/mcf-formula.R | 14 R/mcf-generic.R | 2 R/mcf-rateReg.R | 2 R/mcfDiff.R | 2 R/misc.R | 8 R/plot.R | 2 R/rateReg.R | 6 R/reda.R | 2 R/show.R | 28 R/simEvent.R | 2 R/summary.R | 41 R/zzz.R | 2 README.md | 47 - build/vignette.rds |binary inst/CITATION | 4 inst/doc/reda-Recur.R | 4 inst/doc/reda-Recur.Rmd | 8 inst/doc/reda-Recur.html | 1377 +-------------------------------- inst/doc/reda-intro.html | 1414 +--------------------------------- inst/doc/reda-simulate.html | 1414 +--------------------------------- inst/include/reda.h | 2 inst/include/reda/Process.h | 2 inst/include/reda/nonparametric_mcf.h | 2 inst/include/reda/utils.h | 2 inst/tinytest/test_Recur.R | 8 man/Recur-class.Rd | 6 man/check_Recur.Rd | 2 man/show-method.Rd | 3 man/summary-Recur-method.Rd |only man/summary.Recur-class.Rd |only src/RcppExports.cpp | 29 src/nonparametric_mcf.cpp | 2 src/relativeRisk.cpp | 2 src/utils.cpp |only tests/tinytest.R | 2 vignettes/reda-Recur.Rmd | 8 48 files changed, 618 insertions(+), 4310 deletions(-)
Title: UCA Rcmdr Plug-in
Description: Some extensions to Rcmdr (R Commander), randomness test,
variance test for one normal sample and predictions using active model,
made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 4.4-2 dated 2021-04-01 and 4.4-3 dated 2021-04-02
ChangeLog | 2 +- DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/qualitycontrol.R | 6 +++--- inst/doc/additions.html | 4 ++-- inst/doc/adiciones.html | 4 ++-- inst/etc/menus.txt | 7 ++++--- man/RcmdrPlugin.UCA-package.Rd | 2 +- man/RcmdrPlugin.UCA.es-package.Rd | 2 +- 9 files changed, 27 insertions(+), 26 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
Permanent link
Title: Multivariate Generalized Kernel Smoothing and Related
Statistical Methods
Description: Probability mass functions (PMFs), probability density functions (PDFs), cumulative distribution functions (CDFs) and quantile functions, mainly via (optionally bounded/truncated) kernel smoothing. In the continuous case, there's support for univariate, multivariate and conditional distributions, including distributions that are both multivariate and conditional. These generalize methods from the book "Kernel Smoothing", Wand and Jones (1995). Also, supports categorical distributions, mixed conditional distributions (with mixed input types) and smooth empirical-like distributions, some of which, can be used for statistical classification. There are extensions for computing distance matrices (between distributions), multivariate probabilities, multivariate random numbers, moment-based statistics and mode estimates.
Author: Abby Spurdle
Maintainer: Abby Spurdle <spurdle.a@gmail.com>
Diff between probhat versions 0.3.1 dated 2020-07-14 and 0.4.0 dated 2021-04-02
probhat-0.3.1/probhat/R/ph_cks_eval.r |only probhat-0.3.1/probhat/R/ph_dks.r |only probhat-0.3.1/probhat/R/x_math.r |only probhat-0.3.1/probhat/inst/doc/probhatx_ckernels.R |only probhat-0.3.1/probhat/inst/doc/probhatx_ckernels.Rnw |only probhat-0.3.1/probhat/inst/doc/probhatx_ckernels.pdf |only probhat-0.3.1/probhat/man/11_discrete_kernels.Rd |only probhat-0.3.1/probhat/man/12_continuous_kernels.Rd |only probhat-0.3.1/probhat/man/21_succinct_constructors.Rd |only probhat-0.3.1/probhat/man/22_discrete_kernel_smoothing.Rd |only probhat-0.3.1/probhat/man/23_continuous_kernel_smoothing.Rd |only probhat-0.3.1/probhat/man/24_categorical_distributions.Rd |only probhat-0.3.1/probhat/man/25_empirical-like_distributions.Rd |only probhat-0.3.1/probhat/man/26_mixed_conditional.Rd |only probhat-0.3.1/probhat/man/27_distribution_sets.Rd |only probhat-0.3.1/probhat/man/31_is_functions.Rd |only probhat-0.3.1/probhat/man/32_range_and_sequence_methods.Rd |only probhat-0.3.1/probhat/man/33_print_methods.Rd |only probhat-0.3.1/probhat/man/34_kernel_plot_methods.Rd |only probhat-0.3.1/probhat/man/35_model_plot_methods.Rd |only probhat-0.3.1/probhat/man/36_other_plot_methods.Rd |only probhat-0.3.1/probhat/man/41_global_options.Rd |only probhat-0.3.1/probhat/man/51_duv_plotting_functions.Rd |only probhat-0.3.1/probhat/man/52_cuv_plotting_functions.Rd |only probhat-0.3.1/probhat/man/53_cmv_plotting_functions.Rd |only probhat-0.3.1/probhat/man/54_pairwise_kernel_arrays.Rd |only probhat-0.3.1/probhat/man/61_bandwidth_selection.Rd |only probhat-0.3.1/probhat/man/71_multivariate_probabilities.Rd |only probhat-0.3.1/probhat/man/72_random_number_generation.Rd |only probhat-0.3.1/probhat/man/73_moment-based_statistics.Rd |only probhat-0.3.1/probhat/man/74_order-based_statistics.Rd |only probhat-0.3.1/probhat/man/75_robust-based_statistics.Rd |only probhat-0.3.1/probhat/man/76_mode_estimation.Rd |only probhat-0.3.1/probhat/man/81_mockup_function_objects.Rd |only probhat-0.3.1/probhat/man/82_other_functions.Rd |only probhat-0.3.1/probhat/vignettes/probhatx_ckernels.Rnw |only probhat-0.4.0/probhat/DESCRIPTION | 16 probhat-0.4.0/probhat/MD5 | 133 +-- probhat-0.4.0/probhat/NAMESPACE | 59 - probhat-0.4.0/probhat/R/init.r | 2 probhat-0.4.0/probhat/R/intd.r |only probhat-0.4.0/probhat/R/kernel.r | 263 +++--- probhat-0.4.0/probhat/R/ph.r | 336 ++++--- probhat-0.4.0/probhat/R/ph2.r |only probhat-0.4.0/probhat/R/ph_categorical.r | 156 +-- probhat-0.4.0/probhat/R/ph_cks_constructors.r | 244 ++--- probhat-0.4.0/probhat/R/ph_cks_eval1.r |only probhat-0.4.0/probhat/R/ph_cks_eval2.r |only probhat-0.4.0/probhat/R/ph_cks_init.r | 431 +++++++--- probhat-0.4.0/probhat/R/ph_dks_eval.r |only probhat-0.4.0/probhat/R/ph_dks_init.r |only probhat-0.4.0/probhat/R/ph_empirical.r | 31 probhat-0.4.0/probhat/R/ph_mix.r | 108 +- probhat-0.4.0/probhat/R/pk_distribution_set.r | 48 - probhat-0.4.0/probhat/R/plots_cpd.r | 23 probhat-0.4.0/probhat/R/plots_dpd.r | 29 probhat-0.4.0/probhat/R/plots_mv.r | 193 ++-- probhat-0.4.0/probhat/R/plots_other.r | 85 + probhat-0.4.0/probhat/R/x_kubik_ext.r | 42 probhat-0.4.0/probhat/R/x_math1.r |only probhat-0.4.0/probhat/R/x_math2.r |only probhat-0.4.0/probhat/R/x_probmv.r | 72 + probhat-0.4.0/probhat/R/x_stats.r | 45 - probhat-0.4.0/probhat/R/y_dataprep.r | 18 probhat-0.4.0/probhat/build/vignette.rds |binary probhat-0.4.0/probhat/inst/doc/probhat.R | 244 +++-- probhat-0.4.0/probhat/inst/doc/probhat.Rnw | 312 ++----- probhat-0.4.0/probhat/inst/doc/probhat.pdf |binary probhat-0.4.0/probhat/inst/doc/probhatx_kernels.R |only probhat-0.4.0/probhat/inst/doc/probhatx_kernels.Rnw |only probhat-0.4.0/probhat/inst/doc/probhatx_kernels.pdf |only probhat-0.4.0/probhat/man/00_kernels.Rd |only probhat-0.4.0/probhat/man/01_bridging_functions.Rd |only probhat-0.4.0/probhat/man/10_is_functions.Rd |only probhat-0.4.0/probhat/man/11_names_methods.Rd |only probhat-0.4.0/probhat/man/12_succinct_constructors.Rd |only probhat-0.4.0/probhat/man/20_discrete_kernel_smoothing.Rd |only probhat-0.4.0/probhat/man/21_continuous_kernel_smoothing.Rd |only probhat-0.4.0/probhat/man/22_categorical_distributions.Rd |only probhat-0.4.0/probhat/man/23_mixed_conditional.Rd |only probhat-0.4.0/probhat/man/24_empirical-like_distributions.Rd |only probhat-0.4.0/probhat/man/30_bandwidth_selection.Rd |only probhat-0.4.0/probhat/man/31_distribution_sets.Rd |only probhat-0.4.0/probhat/man/40_as_methods.Rd |only probhat-0.4.0/probhat/man/41_print_methods.Rd |only probhat-0.4.0/probhat/man/42_kernel_plot_methods.Rd |only probhat-0.4.0/probhat/man/43_model_plot_methods.Rd |only probhat-0.4.0/probhat/man/44_other_plot_methods.Rd |only probhat-0.4.0/probhat/man/45_range_and_sequence_methods.Rd |only probhat-0.4.0/probhat/man/50_duv_plotting_functions.Rd |only probhat-0.4.0/probhat/man/51_cuv_plotting_functions.Rd |only probhat-0.4.0/probhat/man/52_cmv_plotting_functions.Rd |only probhat-0.4.0/probhat/man/53_pairwise_kernel_arrays.Rd |only probhat-0.4.0/probhat/man/60_distance_matrices.Rd |only probhat-0.4.0/probhat/man/61_main_multivariate_probabilities.Rd |only probhat-0.4.0/probhat/man/62_other_multivariate_probabilities.Rd |only probhat-0.4.0/probhat/man/63_probability_matrices.Rd |only probhat-0.4.0/probhat/man/64_random_number_generation.Rd |only probhat-0.4.0/probhat/man/70_moment-based_statistics.Rd |only probhat-0.4.0/probhat/man/71_quantile-based_summaries.Rd |only probhat-0.4.0/probhat/man/72_quantile-based_statistics.Rd |only probhat-0.4.0/probhat/man/73_mode_estimation.Rd |only probhat-0.4.0/probhat/man/80_mockup_function_objects.Rd |only probhat-0.4.0/probhat/man/90_global_options.Rd |only probhat-0.4.0/probhat/man/91_other_functions.Rd |only probhat-0.4.0/probhat/man/92_temp_and_deprecated.Rd |only probhat-0.4.0/probhat/vignettes/Makefile | 6 probhat-0.4.0/probhat/vignettes/probhat.Rnw | 312 ++----- probhat-0.4.0/probhat/vignettes/probhatx_kernels.Rnw |only 109 files changed, 1804 insertions(+), 1404 deletions(-)
Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams [aut, cre],
Michael Collyer [aut],
Antigoni Kaliontzopoulou [aut],
Erica Baken [aut]
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 3.3.2 dated 2021-01-12 and 4.0.0 dated 2021-04-02
geomorph-3.3.2/geomorph/R/plotGMPhyloMorphoSpace.r |only geomorph-3.3.2/geomorph/R/plotTangentSpace.r |only geomorph-3.3.2/geomorph/man/plotGMPhyloMorphoSpace.Rd |only geomorph-3.3.2/geomorph/man/plotTangentSpace.Rd |only geomorph-4.0.0/geomorph/DESCRIPTION | 13 geomorph-4.0.0/geomorph/MD5 | 62 geomorph-4.0.0/geomorph/NAMESPACE | 9 geomorph-4.0.0/geomorph/NEWS.md | 13 geomorph-4.0.0/geomorph/R/bilat.symmetry.r | 138 +- geomorph-4.0.0/geomorph/R/compare.evol.rates.r | 2 geomorph-4.0.0/geomorph/R/compare.multi.evol.rates.r | 2 geomorph-4.0.0/geomorph/R/deprecated.defunct.r | 14 geomorph-4.0.0/geomorph/R/geomorph.support.code.r | 895 +++++++++----- geomorph-4.0.0/geomorph/R/geomorph.utils.r | 41 geomorph-4.0.0/geomorph/R/gm.prcomp.R | 1 geomorph-4.0.0/geomorph/R/gpagen.r | 144 +- geomorph-4.0.0/geomorph/R/integration.test.r | 2 geomorph-4.0.0/geomorph/R/make_ggplot.r |only geomorph-4.0.0/geomorph/R/phylo.integration.r | 11 geomorph-4.0.0/geomorph/R/physignal.r | 29 geomorph-4.0.0/geomorph/R/plotAllometry.r | 2 geomorph-4.0.0/geomorph/R/procD.lm.r | 43 geomorph-4.0.0/geomorph/R/shared.support.code.R | 3 geomorph-4.0.0/geomorph/inst/CITATION | 24 geomorph-4.0.0/geomorph/inst/doc/geomorph.PCA.html | 367 +---- geomorph-4.0.0/geomorph/inst/doc/geomorph.assistance.html | 646 +++------- geomorph-4.0.0/geomorph/inst/doc/geomorph.digitize3D.html | 232 --- geomorph-4.0.0/geomorph/inst/doc/geomorph.functions.html | 229 --- geomorph-4.0.0/geomorph/man/bilat.symmetry.Rd | 32 geomorph-4.0.0/geomorph/man/compare.evol.rates.Rd | 2 geomorph-4.0.0/geomorph/man/compare.multi.evol.rates.Rd | 2 geomorph-4.0.0/geomorph/man/gpagen.Rd | 53 geomorph-4.0.0/geomorph/man/make_ggplot.Rd |only geomorph-4.0.0/geomorph/man/procD.lm.Rd | 38 geomorph-4.0.0/geomorph/man/rotate.coords.Rd | 2 35 files changed, 1429 insertions(+), 1622 deletions(-)
Title: Get Images Out of DICOM Format Quickly
Description: Provides tools to sort DICOM-format medical image files, and
convert them to NIfTI-1 format.
Author: Jon Clayden [aut, cre] (<https://orcid.org/0000-0002-6608-0619>),
Chris Rorden [aut],
Martin J Fiedler [cph],
Cong Xu [cph],
Pascal Gloor [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between divest versions 0.10.0 dated 2021-03-28 and 0.10.1 dated 2021-04-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 14 ++++++++++++++ README.md | 12 ++++++------ src/dcm2niix/nii_dicom_batch.cpp | 8 ++++---- 5 files changed, 32 insertions(+), 18 deletions(-)
Title: A Graphical EDA Tool
Description: An automated graphical exploratory data analysis (EDA) tool that introduces:
a.) wideplot() graphics for exploring the structure of a dataset through a grid of variables
and graphic types.
b.) longplot() graphics, which present the entire catalog of available graphics for representing
a particular variable using a grid of graphic types and variations on these types.
c.) plotup() function, which presents a particular graphic for a specific variable of a dataset.
The plotup() function also makes it possible to obtain the code used to generate the graphic,
meaning that the user can adjust its properties as needed.
Author: Pere Millán-Martínez [aut, cre],
Ramon Oller Piqué [ctb]
Maintainer: Pere Millán-Martínez <info@sciencegraph.org>
Diff between brinton versions 0.2.4 dated 2021-01-08 and 0.2.5 dated 2021-04-02
DESCRIPTION | 8 +++--- MD5 | 43 ++++++++++++++++++------------------ R/70_plotup.R | 9 +++++++ README.md | 2 - inst/CITATION |only inst/doc/brinton.R | 13 ++++++++++ inst/doc/brinton.Rmd | 19 +++++++++++++++ inst/doc/brinton.html | 16 +++++++++++-- inst/doc/specimen.html | 2 - vignettes/brinton.Rmd | 19 +++++++++++++++ vignettes/figures/2factor_03-1.png |binary vignettes/figures/2factor_04-1.png |binary vignettes/figures/2factor_08-1.png |binary vignettes/figures/2factor_13-1.png |binary vignettes/figures/2ordered_03-1.png |binary vignettes/figures/2ordered_04-1.png |binary vignettes/figures/2ordered_07-1.png |binary vignettes/figures/2ordered_10-1.png |binary vignettes/figures/fac-ord_04-1.png |binary vignettes/figures/fac-ord_05-1.png |binary vignettes/figures/fac-ord_09-1.png |binary vignettes/figures/fac-ord_14-1.png |binary vignettes/figures/numeric_18-1.png |binary 23 files changed, 101 insertions(+), 30 deletions(-)
Title: Binary Expansion Testing
Description: Nonparametric detection of nonuniformity and dependence with Binary Expansion Testing (BET). See Kai Zhang (2019) BET on Independence, Journal of the American Statistical Association, 114:528, 1620-1637, <DOI:10.1080/01621459.2018.1537921> and Zhigen Zhao, Michael Baiocchi, Kai Zhang. SorBET: A Fast and Powerful Algorithm to Test Dependence of Variables.
Author: Wan Zhang [aut, cre],
Zhigen Zhao [aut],
Michael Baiocchi [aut],
Kai Zhang [aut]
Maintainer: Wan Zhang <wanz63@live.unc.edu>
Diff between BET versions 0.3.4 dated 2021-03-21 and 0.3.5 dated 2021-04-02
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary src/BET3.cpp | 16 ++++++++-------- 4 files changed, 14 insertions(+), 14 deletions(-)
Title: Bindings for Bayesian TidyModels
Description: Fit Bayesian models using 'brms'/'Stan' with 'parsnip'/'tidymodels'
via 'bayesian' <doi:10.5281/zenodo.4430991>. 'tidymodels' is a collection of
packages for machine learning; see Wickham (2020) <https://www.tidymodels.org>).
The technical details of 'brms' and 'Stan' are described in Bürkner (2017)
<doi:10.18637/jss.v080.i01>, Bürkner (2018) <doi:10.32614/RJ-2018-017>,
and Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>.
Author: Hamada S. Badr [aut, cre] (<https://orcid.org/0000-0002-9808-2344>),
Paul C. Bürkner [aut]
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between bayesian versions 0.0.2 dated 2021-01-14 and 0.0.3 dated 2021-04-02
DESCRIPTION | 22 ++- MD5 | 29 ++--- NAMESPACE | 5 NEWS.md | 9 + R/bayesian.R | 234 +++++++++++++++++++++++++++++++++++------ R/bayesian_init.R | 2 R/bayesian_make.R | 30 ++--- README.md | 24 +++- build/vignette.rds |binary inst/CITATION |only inst/WORDLIST | 6 + inst/doc/BugReports.html | 206 ------------------------------------ man/bayesian.Rd | 164 +++++++++++----------------- man/rmd/bayesian-engine.Rmd | 4 tests/spelling.R | 4 tests/testthat/test-bayesian.R | 5 16 files changed, 367 insertions(+), 377 deletions(-)
Title: Tidy Interface to 'data.table'
Description: A tidy interface to 'data.table' that is 'rlang' compatible,
giving users the speed of 'data.table' with the clean syntax of the tidyverse.
Author: Mark Fairbanks [aut, cre],
Tyson Barrett [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb],
Lionel Henry [ctb],
Matt Carlson [ctb],
Abdessabour Moutik [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.5.9 dated 2021-03-04 and 0.6.0 dated 2021-04-02
tidytable-0.5.9/tidytable/man/knit_print.tidytable.Rd |only tidytable-0.6.0/tidytable/DESCRIPTION | 14 - tidytable-0.6.0/tidytable/MD5 | 133 +++++----- tidytable-0.6.0/tidytable/NAMESPACE | 17 - tidytable-0.6.0/tidytable/NEWS.md | 33 ++ tidytable-0.6.0/tidytable/R/arrange.R | 28 -- tidytable-0.6.0/tidytable/R/arrange_across.R | 25 + tidytable-0.6.0/tidytable/R/c_across.R | 6 tidytable-0.6.0/tidytable/R/case.R | 13 tidytable-0.6.0/tidytable/R/complete.R | 10 tidytable-0.6.0/tidytable/R/crossing.R | 13 tidytable-0.6.0/tidytable/R/expand.R | 12 tidytable-0.6.0/tidytable/R/expand_grid.R | 5 tidytable-0.6.0/tidytable/R/filter.R | 31 +- tidytable-0.6.0/tidytable/R/if_all-if_any.R |only tidytable-0.6.0/tidytable/R/mutate.R | 67 ++--- tidytable-0.6.0/tidytable/R/mutate_across.R | 27 -- tidytable-0.6.0/tidytable/R/mutate_rowwise.R | 57 ---- tidytable-0.6.0/tidytable/R/n.R | 15 - tidytable-0.6.0/tidytable/R/nest.R | 2 tidytable-0.6.0/tidytable/R/pivot_longer.R | 130 ++++----- tidytable-0.6.0/tidytable/R/print.R | 18 - tidytable-0.6.0/tidytable/R/rename.R | 4 tidytable-0.6.0/tidytable/R/replace_na.R | 8 tidytable-0.6.0/tidytable/R/row_number.R | 8 tidytable-0.6.0/tidytable/R/separate.R | 2 tidytable-0.6.0/tidytable/R/separate_rows.R | 19 - tidytable-0.6.0/tidytable/R/slice.R | 122 ++++----- tidytable-0.6.0/tidytable/R/summarize.R | 44 --- tidytable-0.6.0/tidytable/R/summarize_across.R | 28 -- tidytable-0.6.0/tidytable/R/tidytable-package.R | 14 - tidytable-0.6.0/tidytable/R/tidytable.R | 13 tidytable-0.6.0/tidytable/R/uncount.R | 4 tidytable-0.6.0/tidytable/R/unite.R | 16 - tidytable-0.6.0/tidytable/R/utils-across.R | 61 ++-- tidytable-0.6.0/tidytable/R/utils-general.R | 86 ++++-- tidytable-0.6.0/tidytable/R/utils-prep_exprs.R |only tidytable-0.6.0/tidytable/README.md | 32 +- tidytable-0.6.0/tidytable/man/arrange..Rd | 10 tidytable-0.6.0/tidytable/man/arrange_across..Rd | 4 tidytable-0.6.0/tidytable/man/filter..Rd | 7 tidytable-0.6.0/tidytable/man/if_all..Rd |only tidytable-0.6.0/tidytable/man/mutate..Rd | 3 tidytable-0.6.0/tidytable/man/mutate_across..Rd | 16 - tidytable-0.6.0/tidytable/man/n..Rd | 13 tidytable-0.6.0/tidytable/man/reexports.Rd | 7 tidytable-0.6.0/tidytable/man/rename..Rd | 2 tidytable-0.6.0/tidytable/man/row_number..Rd | 6 tidytable-0.6.0/tidytable/man/slice..Rd | 9 tidytable-0.6.0/tidytable/man/summarize..Rd | 7 tidytable-0.6.0/tidytable/man/summarize_across..Rd | 12 tidytable-0.6.0/tidytable/man/tidytable.Rd | 2 tidytable-0.6.0/tidytable/tests/testthat/test-arrange.R | 15 + tidytable-0.6.0/tidytable/tests/testthat/test-arrange_across.R | 10 tidytable-0.6.0/tidytable/tests/testthat/test-bind.R | 2 tidytable-0.6.0/tidytable/tests/testthat/test-case_when.R | 12 tidytable-0.6.0/tidytable/tests/testthat/test-expand.R | 34 ++ tidytable-0.6.0/tidytable/tests/testthat/test-extract.R | 15 - tidytable-0.6.0/tidytable/tests/testthat/test-if_all-if_any.R |only tidytable-0.6.0/tidytable/tests/testthat/test-ifelse.R | 28 ++ tidytable-0.6.0/tidytable/tests/testthat/test-mutate.R | 19 + tidytable-0.6.0/tidytable/tests/testthat/test-mutate_across.R | 50 ++- tidytable-0.6.0/tidytable/tests/testthat/test-mutate_rowwise.R | 20 + tidytable-0.6.0/tidytable/tests/testthat/test-pivot_longer.R | 61 +++- tidytable-0.6.0/tidytable/tests/testthat/test-rename.R | 8 tidytable-0.6.0/tidytable/tests/testthat/test-replace_na.R | 18 - tidytable-0.6.0/tidytable/tests/testthat/test-summarize.R | 21 - tidytable-0.6.0/tidytable/tests/testthat/test-summarize_across.R | 23 + tidytable-0.6.0/tidytable/tests/testthat/test-tidytable.R | 7 tidytable-0.6.0/tidytable/tests/testthat/test-top_n.R | 8 70 files changed, 902 insertions(+), 664 deletions(-)
Title: Synthetic Experience Tracking Insurance Claims
Description: Creation of an individual claims simulator which generates various
features of non-life insurance claims. An initial set of test parameters,
designed to mirror the experience of an Auto Liability portfolio, were set
up and applied by default to generate a realistic test data set of
individual claims (see vignette). The simulated data set then allows
practitioners to back-test the validity of various reserving models and to
prove and/or disprove certain actuarial assumptions made in claims
modelling. The distributional assumptions used to generate this data set can
be easily modified by users to match their experiences. Reference: Avanzi B,
Taylor G, Wang M, Wong B (2020) "SynthETIC: an individual insurance claim
simulator with feature control" <arXiv:2008.05693>.
Author: Benjamin Avanzi [aut],
Greg Taylor [aut],
Melantha Wang [aut, cre],
Bernard Wong [aut]
Maintainer: Melantha Wang <wang.melantha@gmail.com>
Diff between SynthETIC versions 0.1.0 dated 2020-08-24 and 1.0.0 dated 2021-04-02
SynthETIC-0.1.0/SynthETIC/data/datalist |only SynthETIC-1.0.0/SynthETIC/DESCRIPTION | 13 SynthETIC-1.0.0/SynthETIC/MD5 | 58 SynthETIC-1.0.0/SynthETIC/NAMESPACE | 1 SynthETIC-1.0.0/SynthETIC/NEWS.md |only SynthETIC-1.0.0/SynthETIC/R/features_01_claim_occurrence.R | 70 SynthETIC-1.0.0/SynthETIC/R/features_02_claim_size.R | 84 SynthETIC-1.0.0/SynthETIC/R/features_03_claim_notification.R | 131 SynthETIC-1.0.0/SynthETIC/R/features_04_claim_closure.R | 147 SynthETIC-1.0.0/SynthETIC/R/features_05_claim_payment_count.R | 148 SynthETIC-1.0.0/SynthETIC/R/features_06_claim_payment_size.R | 136 SynthETIC-1.0.0/SynthETIC/R/features_07_claim_payment_time.R | 176 SynthETIC-1.0.0/SynthETIC/R/output.R | 50 SynthETIC-1.0.0/SynthETIC/R/to_SynthETIC.R |only SynthETIC-1.0.0/SynthETIC/build/vignette.rds |binary SynthETIC-1.0.0/SynthETIC/data/test_claim_dataset.rda |binary SynthETIC-1.0.0/SynthETIC/data/test_claims_object.rda |binary SynthETIC-1.0.0/SynthETIC/data/test_transaction_dataset.rda |binary SynthETIC-1.0.0/SynthETIC/inst/doc/SynthETIC-demo.R | 555 ++ SynthETIC-1.0.0/SynthETIC/inst/doc/SynthETIC-demo.Rmd | 755 ++- SynthETIC-1.0.0/SynthETIC/inst/doc/SynthETIC-demo.html | 1944 +++++----- SynthETIC-1.0.0/SynthETIC/man/SynthETIC-package.Rd | 8 SynthETIC-1.0.0/SynthETIC/man/claim_closure.Rd | 61 SynthETIC-1.0.0/SynthETIC/man/claim_frequency.Rd | 35 SynthETIC-1.0.0/SynthETIC/man/claim_notification.Rd | 59 SynthETIC-1.0.0/SynthETIC/man/claim_output.Rd | 9 SynthETIC-1.0.0/SynthETIC/man/claim_payment_delay.Rd | 51 SynthETIC-1.0.0/SynthETIC/man/claim_payment_no.Rd | 48 SynthETIC-1.0.0/SynthETIC/man/claim_payment_size.Rd | 54 SynthETIC-1.0.0/SynthETIC/man/claim_size.Rd | 31 SynthETIC-1.0.0/SynthETIC/man/to_SynthETIC.Rd |only SynthETIC-1.0.0/SynthETIC/vignettes/SynthETIC-demo.Rmd | 755 ++- 32 files changed, 3590 insertions(+), 1789 deletions(-)
Title: Import Financial Data from the 'SimFin' Project
Description: Uses the 'SimFin' (SIMmplifying FINnance) api at <https://simfin.com/data/access/api> to download financial data straight into your R session.
It includes financial statements -- balance sheet, cash flow and income statement -- and adjusted daily price of stocks.
The available data is comprehensive, going back to 2005 and available for quarters (Q1, Q2, Q3, Q4) and years (FY).
Author: Marcelo S. Perlin
Maintainer: Marcelo S. Perlin <marceloperlin@gmail.com>
Diff between simfinR versions 0.2.2 dated 2020-04-29 and 0.2.3 dated 2021-04-02
DESCRIPTION | 15 ++++++++------- MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 16 +++++++++++++++- man/simfinR_get_single_fin_statement.Rd | 3 ++- 5 files changed, 33 insertions(+), 13 deletions(-)
Title: Bayesian and Classical Audit Sampling
Description: Implements the audit sampling workflow as discussed in Derks et al. (2019) <doi:10.31234/osf.io/9f6ub>. The package makes it easy for an auditor to plan an audit sample, sample from the population, and evaluating that sample using various confidence bounds according to the International Standards on Auditing. Furthermore, the package implements Bayesian equivalents of these methods.
Author: Koen Derks [aut, cre] (<https://orcid.org/0000-0002-5533-9349>)
Maintainer: Koen Derks <k.derks@nyenrode.nl>
Diff between jfa versions 0.5.1 dated 2021-03-02 and 0.5.2 dated 2021-04-02
jfa-0.5.1/jfa/tests/testthat/test-comparison-appendix-a.R |only jfa-0.5.1/jfa/tests/testthat/test-comparison-appendix-c.R |only jfa-0.5.1/jfa/tests/testthat/test-comparison-audit-sampler.R |only jfa-0.5.1/jfa/tests/testthat/test-function-auditPrior.R |only jfa-0.5.1/jfa/tests/testthat/test-function-evaluation.R |only jfa-0.5.1/jfa/tests/testthat/test-function-planning.R |only jfa-0.5.1/jfa/tests/testthat/test-function-selection.R |only jfa-0.5.1/jfa/tests/testthat/test-function-workflow.R |only jfa-0.5.1/jfa/tests/testthat/test-other.R |only jfa-0.5.2/jfa/DESCRIPTION | 8 jfa-0.5.2/jfa/MD5 | 61 jfa-0.5.2/jfa/NEWS.md | 7 jfa-0.5.2/jfa/R/auditPrior.R | 406 ++--- jfa-0.5.2/jfa/R/evaluation.R | 794 +++++------ jfa-0.5.2/jfa/R/hidden.R | 494 +++--- jfa-0.5.2/jfa/R/internal.R | 34 jfa-0.5.2/jfa/R/methods.R | 444 +++--- jfa-0.5.2/jfa/R/planning.R | 529 +++---- jfa-0.5.2/jfa/R/report.R | 34 jfa-0.5.2/jfa/R/selection.R | 259 +-- jfa-0.5.2/jfa/README.md | 240 +-- jfa-0.5.2/jfa/inst/CITATION | 6 jfa-0.5.2/jfa/inst/doc/jfa.html | 9 jfa-0.5.2/jfa/inst/doc/v1auditWorkflow.html | 9 jfa-0.5.2/jfa/inst/doc/v2priorDistributions.html | 9 jfa-0.5.2/jfa/inst/doc/v4testing.html | 9 jfa-0.5.2/jfa/man/auditPrior.Rd | 68 jfa-0.5.2/jfa/man/evaluation.Rd | 126 - jfa-0.5.2/jfa/man/planning.Rd | 70 jfa-0.5.2/jfa/man/report.Rd | 22 jfa-0.5.2/jfa/man/selection.Rd | 48 jfa-0.5.2/jfa/tests/testthat/test-consistency-auditPrior.R |only jfa-0.5.2/jfa/tests/testthat/test-consistency-evaluation.R |only jfa-0.5.2/jfa/tests/testthat/test-consistency-other.R |only jfa-0.5.2/jfa/tests/testthat/test-consistency-planning.R |only jfa-0.5.2/jfa/tests/testthat/test-consistency-selection.R |only jfa-0.5.2/jfa/tests/testthat/test-consistency-workflow.R |only jfa-0.5.2/jfa/tests/testthat/test-validation-appendix-a.R |only jfa-0.5.2/jfa/tests/testthat/test-validation-appendix-c.R |only jfa-0.5.2/jfa/tests/testthat/test-validation-audit-sampler.R |only jfa-0.5.2/jfa/tests/testthat/test-validation-touwhoogduin.R |only 41 files changed, 1864 insertions(+), 1822 deletions(-)
Title: Inspection, Comparison and Visualisation of Data Frames
Description: A collection of utilities for columnwise summary, comparison and visualisation of data frames. Functions report missingness, categorical levels, numeric distribution, correlation, column types and memory usage.
Author: Alastair Rushworth [aut, cre],
David Wilkins [ctb]
Maintainer: Alastair Rushworth <alastairmrushworth@gmail.com>
Diff between inspectdf versions 0.0.10 dated 2021-02-20 and 0.0.11 dated 2021-04-02
DESCRIPTION | 6 +- MD5 | 12 ++-- NAMESPACE | 1 NEWS.md | 8 ++- R/plot_types.R | 133 ++++++++++++++++++++++++++++++++++++++----------------- R/show_plot.R | 5 +- man/show_plot.Rd | 2 7 files changed, 113 insertions(+), 54 deletions(-)
Title: Generate Synthetic Data from Statistical Models
Description: Generate synthetic time series from commonly used statistical models, including linear, nonlinear and chaotic systems. Applications to testing methods can be found in Jiang, Z., Sharma, A., & Johnson, F. (2019) <doi:10.1016/j.advwatres.2019.103430> and Jiang, Z., Sharma, A., & Johnson, F. (2020) <doi:10.1029/2019WR026962> associated with an open-source tool by Jiang, Z., Rashid, M. M., Johnson, F., & Sharma, A. (2020) <doi:10.1016/j.envsoft.2020.104907>.
Author: Ze Jiang [aut, cre] (<https://orcid.org/0000-0002-3472-0829>)
Maintainer: Ze Jiang <ze.jiang@unsw.edu.au>
Diff between synthesis versions 1.2.0 dated 2020-11-05 and 1.2.1 dated 2021-04-02
synthesis-1.2.0/synthesis/R/data_gen_SW.R |only synthesis-1.2.0/synthesis/man/data.gen.SW.Rd |only synthesis-1.2.0/synthesis/man/data.gen.SW1.Rd |only synthesis-1.2.1/synthesis/DESCRIPTION | 19 synthesis-1.2.1/synthesis/MD5 | 85 - synthesis-1.2.1/synthesis/NAMESPACE | 56 - synthesis-1.2.1/synthesis/NEWS.md |only synthesis-1.2.1/synthesis/R/data_gen.R | 136 +- synthesis-1.2.1/synthesis/R/data_gen_AR.R | 350 +++--- synthesis-1.2.1/synthesis/R/data_gen_Chaotic.R | 647 ++++++------ synthesis-1.2.1/synthesis/R/data_gen_Class.R | 292 ++--- synthesis-1.2.1/synthesis/R/data_gen_Friedman.R | 207 ++-- synthesis-1.2.1/synthesis/R/data_gen_HL.R | 109 +- synthesis-1.2.1/synthesis/R/data_gen_NL.R | 185 +-- synthesis-1.2.1/synthesis/R/data_gen_RW.R | 72 - synthesis-1.2.1/synthesis/R/data_gen_SS.R | 52 - synthesis-1.2.1/synthesis/R/data_gen_TAR.R | 97 - synthesis-1.2.1/synthesis/README.md | 67 - synthesis-1.2.1/synthesis/build |only synthesis-1.2.1/synthesis/inst/doc |only synthesis-1.2.1/synthesis/inst/synthesis.bib | 1086 +++++++++++---------- synthesis-1.2.1/synthesis/man/data.gen.Duffing.Rd | 106 +- synthesis-1.2.1/synthesis/man/data.gen.HL.Rd | 130 +- synthesis-1.2.1/synthesis/man/data.gen.Henon.Rd | 106 +- synthesis-1.2.1/synthesis/man/data.gen.LGSS.Rd | 78 - synthesis-1.2.1/synthesis/man/data.gen.Logistic.Rd | 84 - synthesis-1.2.1/synthesis/man/data.gen.Lorenz.Rd | 118 +- synthesis-1.2.1/synthesis/man/data.gen.Rossler.Rd | 160 +-- synthesis-1.2.1/synthesis/man/data.gen.ar1.Rd | 48 synthesis-1.2.1/synthesis/man/data.gen.ar4.Rd | 48 synthesis-1.2.1/synthesis/man/data.gen.ar9.Rd | 48 synthesis-1.2.1/synthesis/man/data.gen.blobs.Rd | 87 - synthesis-1.2.1/synthesis/man/data.gen.circles.Rd | 68 - synthesis-1.2.1/synthesis/man/data.gen.fm1.Rd | 66 - synthesis-1.2.1/synthesis/man/data.gen.fm2.Rd | 70 - synthesis-1.2.1/synthesis/man/data.gen.nl1.Rd | 70 - synthesis-1.2.1/synthesis/man/data.gen.nl2.Rd | 72 - synthesis-1.2.1/synthesis/man/data.gen.norm.Rd | 50 synthesis-1.2.1/synthesis/man/data.gen.rw.Rd | 60 - synthesis-1.2.1/synthesis/man/data.gen.spirals.Rd | 58 - synthesis-1.2.1/synthesis/man/data.gen.tar.Rd | 108 +- synthesis-1.2.1/synthesis/man/data.gen.tar1.Rd | 58 - synthesis-1.2.1/synthesis/man/data.gen.tar2.Rd | 58 - synthesis-1.2.1/synthesis/man/data.gen.unif.Rd | 56 - synthesis-1.2.1/synthesis/tests/testthat.R | 4 synthesis-1.2.1/synthesis/vignettes |only 46 files changed, 2696 insertions(+), 2575 deletions(-)
Title: Bindings to Selected 'liblwgeom' Functions for Simple Features
Description: Access to selected functions found in 'liblwgeom' <https://github.com/postgis/postgis/tree/master/liblwgeom>, the light-weight geometry library used by 'PostGIS' <http://postgis.net/>.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Colin Rundel [ctb],
Andy Teucher [ctb],
liblwgeom developers [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between lwgeom versions 0.2-5 dated 2020-06-12 and 0.2-6 dated 2021-04-02
lwgeom-0.2-5/lwgeom/TODO |only lwgeom-0.2-5/lwgeom/src/liblwgeom/README.topo |only lwgeom-0.2-5/lwgeom/src/liblwgeom/TODO |only lwgeom-0.2-5/lwgeom/src/liblwgeom/gserialized.txt |only lwgeom-0.2-5/lwgeom/src/liblwgeom/liblwgeom.h.in |only lwgeom-0.2-5/lwgeom/src/liblwgeom/lwin_wkt_lex.l |only lwgeom-0.2-5/lwgeom/src/liblwgeom/lwin_wkt_parse.y |only lwgeom-0.2-6/lwgeom/DESCRIPTION | 8 +++---- lwgeom-0.2-6/lwgeom/MD5 | 23 +++++++-------------- lwgeom-0.2-6/lwgeom/R/wkt.R | 2 - lwgeom-0.2-6/lwgeom/configure | 22 ++++++-------------- lwgeom-0.2-6/lwgeom/configure.ac | 8 +++++-- lwgeom-0.2-6/lwgeom/man/st_astext.Rd | 2 - lwgeom-0.2-6/lwgeom/src/Makevars.win | 9 ++++---- lwgeom-0.2-6/lwgeom/src/postgis_config.h | 2 - lwgeom-0.2-6/lwgeom/tests/twkb.Rout.save | 22 ++++++++++---------- 16 files changed, 44 insertions(+), 54 deletions(-)
More information about RCMinification at CRAN
Permanent link
Title: The Matrix Normal Distribution
Description: Computes densities, probabilities, and random deviates of the Matrix Normal (Iranmanesh et al. (2010) <doi:10.7508/ijmsi.2010.02.004>). Also includes simple but useful matrix functions. See the vignette for more information.
Author: Paul M. Hargarten [aut, cre]
Maintainer: Paul M. Hargarten <hargartenp@vcu.edu>
Diff between matrixNormal versions 0.0.4 dated 2020-08-26 and 0.0.5 dated 2021-04-02
DESCRIPTION | 8 +-- MD5 | 8 +-- NEWS.md | 25 ++++++---- build/vignette.rds |binary inst/doc/introduction-to-matrixnormal-package.html | 51 ++++++++++++++------- 5 files changed, 57 insertions(+), 35 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Craig Citro [aut],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Google Inc [cph],
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between gargle versions 1.0.0 dated 2021-03-03 and 1.1.0 dated 2021-04-02
gargle-1.0.0/gargle/tests/testthat/fixtures/drive-files-get-nonexistent-file-id_404_MESSAGE.txt |only gargle-1.0.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-api-key-not-enabled_403_MESSAGE.txt |only gargle-1.0.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-bad-field-mask_400_MESSAGE.txt |only gargle-1.0.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-nonexistent-range_400_MESSAGE.txt |only gargle-1.0.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-nonexistent-sheet-id_404_MESSAGE.txt |only gargle-1.0.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-quota-exceeded-readgroup_429_MESSAGE.txt |only gargle-1.0.0/gargle/tests/testthat/fixtures/tokeninfo-bad-path_404_MESSAGE.txt |only gargle-1.0.0/gargle/tests/testthat/fixtures/tokeninfo-stale_400_MESSAGE.txt |only gargle-1.0.0/gargle/tests/testthat/test-authstate-class.R |only gargle-1.0.0/gargle/tests/testthat/test-oauth-token.R |only gargle-1.0.0/gargle/tests/testthat/test-response-process.R |only gargle-1.1.0/gargle/DESCRIPTION | 18 gargle-1.1.0/gargle/MD5 | 171 ++--- gargle-1.1.0/gargle/NAMESPACE | 6 gargle-1.1.0/gargle/NEWS.md | 81 ++ gargle-1.1.0/gargle/R/AuthState-class.R | 32 - gargle-1.1.0/gargle/R/Gargle-class.R | 94 ++- gargle-1.1.0/gargle/R/aaa.R |only gargle-1.1.0/gargle/R/compat-purrr.R | 5 gargle-1.1.0/gargle/R/conditions.R | 60 + gargle-1.1.0/gargle/R/credential-function-registry.R | 15 gargle-1.1.0/gargle/R/credentials_app_default.R | 8 gargle-1.1.0/gargle/R/credentials_byo_oauth2.R | 12 gargle-1.1.0/gargle/R/credentials_gce.R | 11 gargle-1.1.0/gargle/R/credentials_service_account.R | 14 gargle-1.1.0/gargle/R/credentials_user_oauth2.R | 2 gargle-1.1.0/gargle/R/field-mask.R | 2 gargle-1.1.0/gargle/R/gargle-oauth-app.R | 1 gargle-1.1.0/gargle/R/gargle-package.R | 15 gargle-1.1.0/gargle/R/inside-the-house.R | 23 gargle-1.1.0/gargle/R/oauth-app.R | 3 gargle-1.1.0/gargle/R/oauth-cache.R | 304 +++++++--- gargle-1.1.0/gargle/R/oauth-refresh.R |only gargle-1.1.0/gargle/R/request-develop.R | 4 gargle-1.1.0/gargle/R/request-make.R | 2 gargle-1.1.0/gargle/R/request_retry.R | 35 - gargle-1.1.0/gargle/R/response_process.R | 94 ++- gargle-1.1.0/gargle/R/secret.R | 10 gargle-1.1.0/gargle/R/sysdata.rda |binary gargle-1.1.0/gargle/R/token-fetch.R | 6 gargle-1.1.0/gargle/R/ui.R | 127 +++- gargle-1.1.0/gargle/R/utils.R | 20 gargle-1.1.0/gargle/README.md | 9 gargle-1.1.0/gargle/inst/WORDLIST | 66 +- gargle-1.1.0/gargle/inst/doc/auth-from-web.Rmd | 4 gargle-1.1.0/gargle/inst/doc/auth-from-web.html | 4 gargle-1.1.0/gargle/inst/doc/how-gargle-gets-tokens.Rmd | 2 gargle-1.1.0/gargle/inst/doc/how-gargle-gets-tokens.html | 2 gargle-1.1.0/gargle/inst/doc/non-interactive-auth.R | 4 gargle-1.1.0/gargle/inst/doc/non-interactive-auth.Rmd | 14 gargle-1.1.0/gargle/inst/doc/non-interactive-auth.html | 12 gargle-1.1.0/gargle/inst/doc/troubleshooting.R | 37 - gargle-1.1.0/gargle/inst/doc/troubleshooting.Rmd | 143 +++- gargle-1.1.0/gargle/inst/doc/troubleshooting.html | 131 +++- gargle-1.1.0/gargle/man/AuthState-class.Rd | 12 gargle-1.1.0/gargle/man/Gargle-class.Rd | 18 gargle-1.1.0/gargle/man/gargle_app.Rd | 1 gargle-1.1.0/gargle/man/gargle_oauth_sitrep.Rd | 4 gargle-1.1.0/gargle/man/gargle_options.Rd | 44 + gargle-1.1.0/gargle/man/request_retry.Rd | 2 gargle-1.1.0/gargle/man/response_process.Rd | 18 gargle-1.1.0/gargle/tests/testthat/_snaps |only gargle-1.1.0/gargle/tests/testthat/fixtures/drive-files-get-nonexistent-file-id_404.rds |binary gargle-1.1.0/gargle/tests/testthat/fixtures/fitness-get-wrong-scope_403.R |only gargle-1.1.0/gargle/tests/testthat/fixtures/fitness-get-wrong-scope_403.rds |only gargle-1.1.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-api-key-not-enabled_403.rds |binary gargle-1.1.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-bad-field-mask_400.rds |binary gargle-1.1.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-nonexistent-range_400.rds |binary gargle-1.1.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-nonexistent-sheet-id_404.rds |binary gargle-1.1.0/gargle/tests/testthat/fixtures/sheets-spreadsheets-get-quota-exceeded-readgroup_429.rds |binary gargle-1.1.0/gargle/tests/testthat/fixtures/tokeninfo-bad-path_404.rds |binary gargle-1.1.0/gargle/tests/testthat/fixtures/tokeninfo-stale_400.rds |binary gargle-1.1.0/gargle/tests/testthat/helper.R | 20 gargle-1.1.0/gargle/tests/testthat/test-AuthState-class.R |only gargle-1.1.0/gargle/tests/testthat/test-Gargle-class.R |only gargle-1.1.0/gargle/tests/testthat/test-assets.R | 5 gargle-1.1.0/gargle/tests/testthat/test-credentials-byo-oauth2.R | 4 gargle-1.1.0/gargle/tests/testthat/test-credentials_app_default.R | 44 - gargle-1.1.0/gargle/tests/testthat/test-gce-token.R | 7 gargle-1.1.0/gargle/tests/testthat/test-oauth-app.R | 12 gargle-1.1.0/gargle/tests/testthat/test-oauth-cache.R | 194 ++++-- gargle-1.1.0/gargle/tests/testthat/test-registry.R | 4 gargle-1.1.0/gargle/tests/testthat/test-request-develop.R | 20 gargle-1.1.0/gargle/tests/testthat/test-request-make.R | 8 gargle-1.1.0/gargle/tests/testthat/test-request_retry.R | 148 +++- gargle-1.1.0/gargle/tests/testthat/test-response_process.R |only gargle-1.1.0/gargle/tests/testthat/test-token-info.R | 2 gargle-1.1.0/gargle/tests/testthat/test-ui.R |only gargle-1.1.0/gargle/tests/testthat/test-utils.R | 16 gargle-1.1.0/gargle/vignettes/auth-from-web.Rmd | 4 gargle-1.1.0/gargle/vignettes/deleted_client.png |only gargle-1.1.0/gargle/vignettes/how-gargle-gets-tokens.Rmd | 2 gargle-1.1.0/gargle/vignettes/non-interactive-auth.Rmd | 14 gargle-1.1.0/gargle/vignettes/troubleshooting.Rmd | 143 +++- 94 files changed, 1638 insertions(+), 711 deletions(-)
Title: Maximum Likelihood Shrinkage using Generalized Ridge or Least
Angle Regression
Description: Functions are provided to calculate and display ridge TRACE diagnostics for a
wide variety of alternative shrinkage Paths. While all methods focus on Maximum Likelihood
estimation of unknown true effects under Normal-distribution theory, some estimates are
modified to be Unbiased or to have "Correct Range" when estimating either [1] the noncentrality
of the F-ratio for testing that true Beta coefficients are Zeros or [2] the "relative" MSE
Risk (i.e. MSE divided by true sigma-square, where the "relative" variance of OLS is known.)
The eff.ridge() function implements the "Efficient Shrinkage Path" introduced in Obenchain
(2021) <arXiv:2103.05161>. This new "p-Parameter" Shrinkage-Path always passes through the
vector of regression coefficient estimates Most-Likely to achieve the overall Optimal
Variance-Bias Trade-Off and is the shortest Path with this property. Functions eff.aug() and
eff.biv() augment the calculations made by eff.ridge() to provide plots of the bivariate
confidence ellipses corresponding to any of the p*(p-1) possible ordered pairs of shrunken
regression coefficients.
Author: Bob Obenchain
Maintainer: Bob Obenchain <wizbob@att.net>
Diff between RXshrink versions 1.7 dated 2021-02-04 and 2.0 dated 2021-04-02
DESCRIPTION | 21 +++++++------- MD5 | 72 ++++++++++++++++++++++++------------------------ NAMESPACE | 8 ++--- R/MLfuns.R | 10 +++--- R/RXpredict.R | 8 ++--- R/eff.ridge.R | 6 ++-- R/unr.ridge.R | 8 +++-- demo/00Index | 6 ++-- demo/haldport.R | 34 +++++++--------------- demo/longley2.R | 12 ++++---- demo/mpg.R | 17 ++++++----- demo/tycobb.R | 18 ++++++------ man/MLboot.Rd | 9 ++---- man/MLcalc.Rd | 35 +++++++++++------------ man/MLtrue.Rd | 8 ++--- man/RXpredict.Rd | 14 ++++----- man/RXshrink-package.Rd | 55 ++++++++++++++++++++---------------- man/YonX.Rd | 15 +++++----- man/aug.lars.Rd | 8 ++--- man/correct.signs.Rd | 10 +++--- man/eff.aug.Rd | 9 +++--- man/eff.biv.Rd | 13 +++++--- man/eff.ridge.Rd | 28 +++++++++--------- man/kofm.Rd | 7 +--- man/meff.Rd | 9 +++--- man/mofk.Rd | 11 ++----- man/plot.RXpredict.Rd | 10 +++--- man/plot.YonX.Rd | 4 +- man/plot.aug.lars.Rd | 2 - man/plot.eff.biv.Rd | 22 ++++++++------ man/plot.eff.ridge.Rd | 2 - man/plot.qm.ridge.Rd | 2 - man/plot.uc.lars.Rd | 2 - man/plot.unr.ridge.Rd | 7 ++-- man/qm.ridge.Rd | 13 +++++--- man/uc.lars.Rd | 6 ++-- man/unr.ridge.Rd | 34 +++++++++++----------- 37 files changed, 277 insertions(+), 278 deletions(-)
Title: Apply Functions to All Combinations of List Elements
Description: Provides an extension to the 'purrr' family of mapping
functions to apply a function to each combination of elements in a
list of inputs. Also includes functions for automatically detecting
output type in mapping functions, finding every combination of
elements of lists or rows of data frames, and applying multiple models
to multiple subsets of a dataset.
Author: Alexander Rossell Hayes [aut, cre, cph]
(<https://orcid.org/0000-0001-9412-0457>)
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between crossmap versions 0.2.0 dated 2020-09-24 and 0.3.0 dated 2021-04-02
crossmap-0.2.0/crossmap/R/isFALSE.R |only crossmap-0.2.0/crossmap/man/isFALSE.Rd |only crossmap-0.3.0/crossmap/DESCRIPTION | 28 - crossmap-0.3.0/crossmap/MD5 | 68 +-- crossmap-0.3.0/crossmap/NAMESPACE | 4 crossmap-0.3.0/crossmap/NEWS.md | 24 - crossmap-0.3.0/crossmap/R/autonames.R | 14 crossmap-0.3.0/crossmap/R/compact_null.R |only crossmap-0.3.0/crossmap/R/cross_fit.R | 123 +---- crossmap-0.3.0/crossmap/R/cross_fit_glm.R |only crossmap-0.3.0/crossmap/R/cross_fit_internal.R |only crossmap-0.3.0/crossmap/R/cross_join.R | 12 crossmap-0.3.0/crossmap/R/cross_list.R | 7 crossmap-0.3.0/crossmap/R/errors.R | 106 +++- crossmap-0.3.0/crossmap/R/future_map_vec.R | 11 crossmap-0.3.0/crossmap/R/future_xmap.R | 250 ++++++----- crossmap-0.3.0/crossmap/R/future_xmap_mat.R | 5 crossmap-0.3.0/crossmap/R/map_vec.R | 1 crossmap-0.3.0/crossmap/R/onLoad.R |only crossmap-0.3.0/crossmap/R/tidy_glance.R |only crossmap-0.3.0/crossmap/R/xmap.R | 262 +++++------- crossmap-0.3.0/crossmap/R/xmap_mat.R | 2 crossmap-0.3.0/crossmap/README.md | 28 - crossmap-0.3.0/crossmap/man/autonames.Rd | 5 crossmap-0.3.0/crossmap/man/cross_fit.Rd | 38 + crossmap-0.3.0/crossmap/man/cross_fit_glm.Rd |only crossmap-0.3.0/crossmap/man/cross_join.Rd | 10 crossmap-0.3.0/crossmap/man/cross_list.Rd | 3 crossmap-0.3.0/crossmap/man/crossmap-package.Rd | 12 crossmap-0.3.0/crossmap/man/future_map_vec.Rd | 12 crossmap-0.3.0/crossmap/man/future_xmap.Rd | 28 - crossmap-0.3.0/crossmap/man/future_xmap_mat.Rd | 6 crossmap-0.3.0/crossmap/man/tidy_glance.Rd |only crossmap-0.3.0/crossmap/man/xmap.Rd | 1 crossmap-0.3.0/crossmap/tests/testthat/test-cross_fit.R | 121 ++--- crossmap-0.3.0/crossmap/tests/testthat/test-cross_fit_glm.R |only crossmap-0.3.0/crossmap/tests/testthat/test-cross_join.R | 28 - crossmap-0.3.0/crossmap/tests/testthat/test-cross_list.R | 4 crossmap-0.3.0/crossmap/tests/testthat/test-errors.R | 38 - crossmap-0.3.0/crossmap/tests/testthat/test-future_xmap.R | 18 40 files changed, 632 insertions(+), 637 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-18 0.0.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-06 0.3.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-22 2.2.4
2020-09-18 2.2.3
2020-04-21 2.1.2
2019-12-13 2.0.10
2019-07-24 2.0.8
2019-07-11 2.0.7