Title: RJ Clustering Algorithm
Description: Clustering algorithm for high dimensional data. This algorithm is ideal for data where N << P. Assuming that P feature measurements on N objects are arranged in an N×P matrix X, this package provides clustering based on the left Gram matrix XX^T. When the P-dimensional feature vectors of objects are drawn independently from a K distinct mixture distribution, the N-dimensional rows of the modified Gram matrix XX^T/P converges almost surely to K distinct cluster means. This transformation/projection thus allows the clusters to be tighter with order of P. To simulate data, type "help('simulate_HD_data')" and to learn how to use the clustering algorithm, type "help('RJclust')".
Author: Rachael Shudde [aut, cre],
Shahina Rahman [aut],
Valen Johnson [aut]
Maintainer: Rachael Shudde <rachael.shudde@gmail.com>
Diff between RJcluster versions 0.1.2 dated 2021-03-10 and 2.5.0 dated 2021-04-06
RJcluster-0.1.2/RJcluster/man/f_rez.Rd |only RJcluster-0.1.2/RJcluster/man/generateSimulationData.Rd |only RJcluster-0.1.2/RJcluster/man/scaleRJ.Rd |only RJcluster-0.1.2/RJcluster/src/Makevars |only RJcluster-2.5.0/RJcluster/DESCRIPTION | 17 RJcluster-2.5.0/RJcluster/MD5 | 55 +- RJcluster-2.5.0/RJcluster/NAMESPACE | 5 RJcluster-2.5.0/RJcluster/R/AlgorithmImplementation.R | 298 +++++++----- RJcluster-2.5.0/RJcluster/R/DATA_generate_test_data.R | 115 +++- RJcluster-2.5.0/RJcluster/R/FUNC_AMI_calculations.R | 89 ++- RJcluster-2.5.0/RJcluster/R/FUNC_Gcov.R |only RJcluster-2.5.0/RJcluster/R/FUNC_RJ_calls.R |only RJcluster-2.5.0/RJcluster/R/FUNC_RJmean.R |only RJcluster-2.5.0/RJcluster/R/FUNC_bic_RJclust.R |only RJcluster-2.5.0/RJcluster/R/RcppExports.R | 56 ++ RJcluster-2.5.0/RJcluster/R/WrapperFunctions.R | 11 RJcluster-2.5.0/RJcluster/R/old_RJmean.R |only RJcluster-2.5.0/RJcluster/README.md | 3 RJcluster-2.5.0/RJcluster/build/partial.rdb |only RJcluster-2.5.0/RJcluster/cleanup |only RJcluster-2.5.0/RJcluster/configure |only RJcluster-2.5.0/RJcluster/configure.ac |only RJcluster-2.5.0/RJcluster/inst/doc/RJclust_Vignette.R | 29 - RJcluster-2.5.0/RJcluster/inst/doc/RJclust_Vignette.Rmd | 48 + RJcluster-2.5.0/RJcluster/inst/doc/RJclust_Vignette.pdf |binary RJcluster-2.5.0/RJcluster/man/Mutual_Information.Rd |only RJcluster-2.5.0/RJcluster/man/RJclust.Rd | 53 +- RJcluster-2.5.0/RJcluster/man/RJcluster-package.Rd |only RJcluster-2.5.0/RJcluster/man/simulate_HD_data.Rd |only RJcluster-2.5.0/RJcluster/src/AlgorithmImplementation_c.cpp | 15 RJcluster-2.5.0/RJcluster/src/FUNC_Gcov_c.cpp |only RJcluster-2.5.0/RJcluster/src/FUNC_RJmean_c.cpp |only RJcluster-2.5.0/RJcluster/src/FUNC_bic_RJclust_c.cpp |only RJcluster-2.5.0/RJcluster/src/FUNC_dmvnrm_rcpp.cpp |only RJcluster-2.5.0/RJcluster/src/Makevars.in |only RJcluster-2.5.0/RJcluster/src/Makevars.win | 49 + RJcluster-2.5.0/RJcluster/src/MatrixOperations.cpp | 6 RJcluster-2.5.0/RJcluster/src/RcppExports.cpp | 217 ++++++++ RJcluster-2.5.0/RJcluster/vignettes/RJclust_Vignette.Rmd | 48 + 39 files changed, 820 insertions(+), 294 deletions(-)
Title: A Zero Dependency 'SVG' Icon Library for 'Shiny'
Description: An implementation of the 'Heroicons' icon library for 'shiny'
applications and other 'R' web-based projects. You can search, render,
and customize icons without 'CSS' or 'JavaScript' dependencies.
Author: David Ruvolo [aut, cre] (<https://orcid.org/0000-0002-5745-5298>),
Adam Wathan [ctb, cph] (Author of heroicons library),
Steve Schoger [ctb, cph] (Author of heroicons library)
Maintainer: David Ruvolo <dcruvolo@gmail.com>
Diff between rheroicons versions 0.3.1 dated 2021-02-26 and 0.3.2 dated 2021-04-06
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/sysdata.rda |binary README.md | 35 +++++++++++++++++++++++------------ 5 files changed, 34 insertions(+), 20 deletions(-)
Title: "Eating the Liver of Data Science"
Description: Provides a collection of helper functions that make various techniques from data science more user-friendly for non-experts. In this way, our aim is to allow non-experts to become familiar with the techniques with only a minimal level of coding knowledge. Indeed, following an ancient Persian idiom, we refer to this as "eating the liver of data science" which could be interpreted as "getting intimately close with data science". Examples of procedures we include are: data partitioning for out-of-sample testing, computing Mean Squared Error (MSE) for quantifying prediction accuracy, and data transformation (z-score and min-max). Besides such helper functions, the package also includes several interesting datasets that are useful for multivariate analysis.
Author: Reza Mohammadi [aut, cre] (<https://orcid.org/0000-0001-9538-0648>),
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.5 dated 2021-03-09 and 1.6 dated 2021-04-06
DESCRIPTION | 8 +++---- MD5 | 26 +++++++++++++++---------- NAMESPACE | 9 ++++++-- NEWS.md | 8 ++++++- R/conf.mat.R | 2 - R/conf.mat.plot.R |only R/kNN.R | 30 ++++++++++++++-------------- R/kNN.plot.R |only R/mae.R |only R/partition.R | 53 +++++++++++++++------------------------------------ man/conf.mat.Rd | 2 + man/conf.mat.plot.Rd |only man/kNN.plot.Rd |only man/mae.Rd |only man/marketing.Rd | 1 man/mse.Rd | 2 + man/partition.Rd | 4 ++- 17 files changed, 73 insertions(+), 72 deletions(-)
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial transport
data and non-motorized modes. Enables common transport planning tasks including:
downloading and cleaning transport datasets; creating geographic "desire lines"
from origin-destination (OD) data; route assignment, locally and via
interfaces to routing services such as <https://cyclestreets.net/> and
calculation of route segment attributes such as bearing.
The package implements the 'travel flow aggregration' method
described in Morgan and Lovelace (2020) <doi:10.1177/2399808320942779>.
Further information on the package's aim and scope can be found
in the vignettes and in a paper in the R Journal
(Lovelace and Ellison 2018) <doi:10.32614/RJ-2018-053>.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Richard Ellison [aut],
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Barry Rowlingson [ctb],
Nick Bearman [ctb],
Nikolai Berkoff [ctb],
Scott Chamberlain [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10),
Mark Padgham [ctb],
Andrea Gilardi [ctb] (<https://orcid.org/0000-0002-9424-7439>)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.8.1 dated 2021-01-07 and 0.8.2 dated 2021-04-06
DESCRIPTION | 13 ++++++------- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 4 ++++ R/route.R | 28 +++++++++++----------------- README.md | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/stplanr-od.R | 5 ----- inst/doc/stplanr-od.Rmd | 7 +------ inst/doc/stplanr-od.html | 17 ++++++++++++----- inst/doc/stplanr-paper.html | 9 ++++++++- inst/doc/stplanr-parallel.html | 9 ++++++++- inst/doc/stplanr-route-nets.html | 11 +++++++++-- inst/doc/stplanr-routing.html | 9 ++++++++- inst/doc/stplanr.Rmd | 4 ++-- inst/doc/stplanr.html | 29 ++++++++++++++++++----------- man/route.Rd | 2 +- vignettes/stplanr-od.Rmd | 7 +------ vignettes/stplanr.Rmd | 4 ++-- 19 files changed, 110 insertions(+), 86 deletions(-)
Title: Regression Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as linear regression, penalized regression, k-nearest neighbors, decision trees, ada boosting, extreme gradient boosting, random forest, neural networks, deep learning and support vector machines.
Author: Oldemar Rodriguez R. [aut, cre],
Andres Navarro D. [ctb, prg],
Diego Jimenez A. [ctb, prg],
Ariel Arroyo S. [ctb, prg]
Maintainer: Oldemar Rodriguez R. <oldemar.rodriguez@ucr.ac.cr>
Diff between regressoR versions 1.1.9 dated 2020-07-01 and 1.2.1 dated 2021-04-06
DESCRIPTION | 34 ++++++++---------- MD5 | 33 ++++++++++-------- NAMESPACE | 17 ++++++++- R/code_generate.R | 4 ++ R/plots_manipulation.R | 14 +++---- R/shiny_tools.R | 2 + R/string_manipulation.R | 2 - inst/application/Utilities.R | 11 ++++++ inst/application/server.R | 2 - inst/application/ui.R | 33 +++++++++--------- inst/application/utils_inputs.R |only inst/application/www/regressor_inputs.css |only inst/application/www/regressor_inputs.js |only inst/application/www/style_regressor.css | 54 ------------------------------ inst/extdata/diccionario.csv | 20 ++++++----- inst/extdata/translation.bin |binary man/rd_model.Rd | 3 + man/rd_type.Rd | 3 + man/render_table_data.Rd | 3 + 19 files changed, 113 insertions(+), 122 deletions(-)
Title: A Minimalist Web Framework for R
Description: A minimalist web framework for developing application programming
interfaces in R that provides a flexible framework for handling common
HTTP-requests, errors, logging, and an ability to integrate any R code as
server middle-ware.
Author: Hans Martin [aut],
Jonathan Callahan [aut, cre]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between beakr versions 0.4.2 dated 2021-03-04 and 0.4.3 dated 2021-04-06
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/utils-middleware.R | 2 +- man/serveStaticFiles.Rd | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: World Development Indicators and Other World Bank Data
Description: Search and download data from over 40 databases hosted by the World Bank, including the World Development Indicators ('WDI'), International Debt Statistics, Doing Business, Human Capital Index, and Sub-national Poverty indicators.
Author: Vincent Arel-Bundock [aut, cre]
(<https://orcid.org/0000-0003-2042-7063>),
Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between WDI versions 2.7.3 dated 2021-03-30 and 2.7.4 dated 2021-04-06
DESCRIPTION | 6 MD5 | 34 - NAMESPACE | 20 NEWS.md | 144 +++--- R/WDI-package.R | 38 - R/WDI.R | 929 ++++++++++++++++++++++----------------------- README.md | 276 ++++++------- man/WDI-package.Rd | 50 +- man/WDI.Rd | 152 +++---- man/WDI_data.Rd | 84 ++-- man/WDIbulk.Rd | 46 +- man/WDIcache.Rd | 40 - man/WDIsearch.Rd | 70 +-- man/languages_supported.Rd | 38 - man/wdi.dl.Rd | 24 - man/wdi.query.Rd | 38 - tests/testthat.R | 8 tests/testthat/test-all.R | 285 ++++++------- 18 files changed, 1144 insertions(+), 1138 deletions(-)
Title: Bayesian Generalized Linear Models with Time-Varying
Coefficients
Description: Bayesian generalized linear models with time-varying coefficients
as in Helske (2020, <arXiv:2009.07063>). Gaussian, Poisson, and binomial
observations are supported. The Markov chain Monte Carlo (MCMC) computations are done using
Hamiltonian Monte Carlo provided by Stan, using a state space representation
of the model in order to marginalise over the coefficients for efficient sampling.
For non-Gaussian models, the package uses the importance sampling type estimators based on
approximate marginal MCMC as in Vihola, Helske, Franks (2020, <doi:10.1111/sjos.12492>).
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between walker versions 1.0.1-1 dated 2021-01-30 and 1.0.2 dated 2021-04-06
DESCRIPTION | 8 - MD5 | 29 +-- R/lfo.R | 40 ++--- R/print_fit.R | 4 R/walker.R | 8 - README.md | 5 inst/CITATION | 10 - inst/doc/walker.Rmd | 16 +- inst/doc/walker.html | 342 ++++++++++--------------------------------- inst/stan/walker_glm.stan | 4 inst/stan/walker_lm.stan | 6 src/stanExports_walker_glm.h | 30 +-- src/stanExports_walker_lm.h | 52 +++--- vignettes/dag.png |only vignettes/walker.Rmd | 16 +- vignettes/walker.bib | 16 ++ 16 files changed, 210 insertions(+), 376 deletions(-)
Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which are
a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Xue-Song Liu [aut] (<https://orcid.org/0000-0002-7736-0077>),
Martin Morgan [ctb],
Christine Stawitz [rev] (Christine reviewed the package for ropensci,
see <https://github.com/ropensci/software-review/issues/315>),
Carl Ganz [rev] (Carl reviewed the package for ropensci, see
<https://github.com/ropensci/software-review/issues/315>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.4.3 dated 2021-03-22 and 1.4.4 dated 2021-04-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/XenaDownload.R | 8 ++++++-- inst/doc/USCSXenaTools.html | 8 ++++---- 5 files changed, 22 insertions(+), 13 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <gschneidz@gmail.com>
Diff between NSM3 versions 1.15 dated 2020-08-31 and 1.16 dated 2021-04-06
DESCRIPTION | 8 +- MD5 | 4 - R/pKolSmirn.R | 162 +++++++++++++++++++++++++++++----------------------------- 3 files changed, 87 insertions(+), 87 deletions(-)
Title: (Non)Additive Genetic Relatedness Matrices
Description: Constructs (non)additive genetic relationship matrices, and their
inverses, from a pedigree to be used in linear mixed effect models (A.K.A.
the 'animal model'). Also includes other functions to facilitate the use of
animal models. Some functions have been created to be used in conjunction
with the R package 'asreml' for the 'ASReml' software, which can be
obtained upon purchase from 'VSN' international
(<https://www.vsni.co.uk/software/asreml>).
Author: Matthew Wolak [cre, aut]
Maintainer: Matthew Wolak <matthewwolak@gmail.com>
Diff between nadiv versions 2.17.0 dated 2021-01-14 and 2.17.1 dated 2021-04-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 +++++++- R/prepPed.R | 4 ++-- README.md | 33 +++++++++++++++++++-------------- 5 files changed, 36 insertions(+), 25 deletions(-)
Title: Retrieves Gene Expression Dataset and Gene Symbols from GEO Code
Description: A function that reads in the GEO code of a gene expression dataset, retrieves its data from GEO, (optional) retrieves the gene symbols of the dataset, and returns a simple dataframe table containing all the data. Platforms available: GPL11532, GPL23126, GPL6244, GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.
Author: Davide Chicco [aut, cre]
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Diff between geneExpressionFromGEO versions 0.4 dated 2021-01-25 and 0.5 dated 2021-04-06
DESCRIPTION | 7 ++--- MD5 | 5 ++- R/geneExpressionFromGEO.r | 62 ++++++++++++++++++++++++++++++++++++++++++++++ man/readUrl.Rd |only 4 files changed, 68 insertions(+), 6 deletions(-)
More information about geneExpressionFromGEO at CRAN
Permanent link
Title: Port of 'Dparser' Package
Description: A Scannerless GLR parser/parser generator. Note that GLR standing for "generalized LR", where L stands for "left-to-right" and
R stands for "rightmost (derivation)". For more information see <https://en.wikipedia.org/wiki/GLR_parser>. This parser is based on the Tomita
(1987) algorithm. (Paper can be found at <https://www.aclweb.org/anthology/P84-1073.pdf>).
The original 'dparser' package documentation can be found at <http://dparser.sourceforge.net/>. This allows you to add mini-languages to R (like
RxODE's ODE mini-language Wang, Hallow, and James 2015 <DOI:10.1002/psp4.12052>) or to parse other languages like 'NONMEM' to automatically translate
them to R code. To use this in your code, add a LinkingTo dparser in your DESCRIPTION file and instead of using #include <dparse.h> use
#include <dparser.h>. This also provides a R-based port of the make_dparser <http://dparser.sourceforge.net/d/make_dparser.cat> command called
mkdparser(). Additionally you can parse an arbitrary grammar within R using the dparse() function, which works on most OSes and is mainly for grammar
testing. The fastest parsing, of course, occurs at the C level, and is suggested.
Author: Matthew Fidler [aut, cre],
John Plevyak [aut, cph]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between dparser versions 1.3.1-2 dated 2021-04-03 and 1.3.1-3 dated 2021-04-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 ++++++- R/dparser.R | 4 ++-- tests/testthat/test-dparser.R | 3 +-- 5 files changed, 16 insertions(+), 12 deletions(-)
Title: Simulate Package Installation and Attach
Description: Simulates the process of installing a package
and then attaching it. This is a key part of the 'devtools' package as it
allows you to rapidly iterate while developing a package.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between pkgload versions 1.2.0 dated 2021-02-23 and 1.2.1 dated 2021-04-06
DESCRIPTION | 13 ++--- MD5 | 20 ++++---- NEWS.md | 14 ++++++ R/load.r | 75 +++++++++++++++++++++------------ R/package.r | 12 ++++- R/unload.r | 12 +++-- R/zzz.r | 2 man/load_all.Rd | 23 +++++----- tests/testthat/test-load.r | 44 +++++++++++++++++-- tests/testthat/testS3removed/NAMESPACE | 2 tests/testthat/testS3removed/R/S3.r | 10 +++- 11 files changed, 160 insertions(+), 67 deletions(-)
Title: Equating of Multiple Forms
Description: Equating of multiple forms using Item Response Theory (IRT) methods (Battauz M. (2017) <doi:10.1007/s11336-016-9517-x> and Haberman S. J. (2009) <doi:10.1002/j.2333-8504.2009.tb02197.x>).
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateMultiple versions 0.0.1 dated 2020-10-26 and 0.1.0 dated 2021-04-06
DESCRIPTION | 6 +- MD5 | 8 +-- R/EqMult.r | 47 +++++++++++-------- build/vignette.rds |binary inst/doc/equateMultiple_tutorial.html | 81 ++++++++++++++++------------------ 5 files changed, 74 insertions(+), 68 deletions(-)
More information about equateMultiple at CRAN
Permanent link
Title: Check the Clustering Tendency
Description: Calculate some statistics aiming to help analyzing the clustering tendency of given data. In the first version, Hopkins' statistic is implemented.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>),
Luo YiLan [aut],
Zeng RuTong [aut]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between clustertend versions 1.4 dated 2015-05-19 and 1.5 dated 2021-04-06
DESCRIPTION | 20 ++++++++++++++------ MD5 | 5 +++-- NAMESPACE | 1 + NEWS.md |only 4 files changed, 18 insertions(+), 8 deletions(-)
Title: Conditional Graphical LASSO for Gaussian Graphical Models with
Censored and Missing Values
Description: Conditional graphical lasso estimator is an extension of the graphical lasso proposed to estimate the conditional dependence structure of a set of p response variables given q predictors. This package provides suitable extensions developed to study datasets with censored and/or missing values. Standard conditional graphical lasso is available as a special case. Furthermore, the package provides an integrated set of core routines for visualization, analysis, and simulation of datasets with censored and/or missing values drawn from a Gaussian graphical model. Details about the implemented models can be found in Augugliaro et al. (2020b) <doi: 10.1007/s11222-020-09945-7>, Augugliaro et al. (2020a) <doi: 10.1093/biostatistics/kxy043>, Yin et al. (2001) <doi: 10.1214/11-AOAS494> and Stadler et al. (2012) <doi: 10.1007/s11222-010-9219-7>.
Author: Luigi Augugliaro [aut, cre] (<https://orcid.org/0000-0002-4603-7541>),
Gianluca Sottile [aut] (<https://orcid.org/0000-0001-9347-7251>),
Ernst C. Wit [aut] (<https://orcid.org/0000-0002-3671-9610>),
Veronica Vinciotti [aut] (<https://orcid.org/0000-0002-2625-7977>)
Maintainer: Luigi Augugliaro <luigi.augugliaro@unipa.it>
Diff between cglasso versions 2.0.2 dated 2021-01-21 and 2.0.3 dated 2021-04-06
cglasso-2.0.2/cglasso/data/datalist |only cglasso-2.0.2/cglasso/man/aic.Rd |only cglasso-2.0.2/cglasso/man/bic.Rd |only cglasso-2.0.3/cglasso/ChangeLog | 27 ++++ cglasso-2.0.3/cglasso/DESCRIPTION | 8 - cglasso-2.0.3/cglasso/MD5 | 105 ++++++++------- cglasso-2.0.3/cglasso/NAMESPACE | 31 +++- cglasso-2.0.3/cglasso/R/GoF.R | 45 ++---- cglasso-2.0.3/cglasso/R/GoF_S3methods.R | 2 cglasso-2.0.3/cglasso/R/ShowStructure.R | 99 +++++++------- cglasso-2.0.3/cglasso/R/cggm.R | 59 ++------ cglasso-2.0.3/cglasso/R/cggm_S3methods.R | 7 - cglasso-2.0.3/cglasso/R/cglasso.R | 98 ++++++++++++-- cglasso-2.0.3/cglasso/R/cglasso_S3methods.R | 109 ++++++++-------- cglasso-2.0.3/cglasso/R/cglasso_tools.R | 8 - cglasso-2.0.3/cglasso/R/datacggm.R | 8 - cglasso-2.0.3/cglasso/R/datacggm_S3methods.R | 152 +++++++++++++---------- cglasso-2.0.3/cglasso/R/datacggm_tools.R | 109 +++++++++++----- cglasso-2.0.3/cglasso/R/to_graph.R | 14 +- cglasso-2.0.3/cglasso/build/partial.rdb |binary cglasso-2.0.3/cglasso/data/Example.RData |only cglasso-2.0.3/cglasso/data/MM.RData |binary cglasso-2.0.3/cglasso/man/AIC.cglasso.Rd |only cglasso-2.0.3/cglasso/man/BIC.cglasso.Rd |only cglasso-2.0.3/cglasso/man/ColMeans.Rd | 2 cglasso-2.0.3/cglasso/man/Example.Rd |only cglasso-2.0.3/cglasso/man/MKMEP.Rd | 2 cglasso-2.0.3/cglasso/man/MM.Rd | 4 cglasso-2.0.3/cglasso/man/QFun.Rd | 8 - cglasso-2.0.3/cglasso/man/cggm.Rd | 19 +- cglasso-2.0.3/cglasso/man/cglasso-package.Rd | 4 cglasso-2.0.3/cglasso/man/cglasso.Rd | 27 ++-- cglasso-2.0.3/cglasso/man/coef.cglasso.Rd | 4 cglasso-2.0.3/cglasso/man/datacggm.Rd | 6 cglasso-2.0.3/cglasso/man/dim.datacggm.Rd | 2 cglasso-2.0.3/cglasso/man/fitted.cglasso.Rd | 4 cglasso-2.0.3/cglasso/man/getGraph.Rd | 4 cglasso-2.0.3/cglasso/man/hist.datacggm.Rd | 2 cglasso-2.0.3/cglasso/man/impute.Rd | 4 cglasso-2.0.3/cglasso/man/is.cglasso2igraph.Rd | 2 cglasso-2.0.3/cglasso/man/nobs.datacggm.Rd | 32 ++-- cglasso-2.0.3/cglasso/man/plot.GoF.Rd | 29 ++-- cglasso-2.0.3/cglasso/man/plot.cggm.Rd | 2 cglasso-2.0.3/cglasso/man/plot.cglasso.Rd | 22 +-- cglasso-2.0.3/cglasso/man/plot.cglasso2igraph.Rd | 4 cglasso-2.0.3/cglasso/man/predict.cglasso.Rd | 5 cglasso-2.0.3/cglasso/man/qqcnorm.Rd | 2 cglasso-2.0.3/cglasso/man/residuals.cglasso.Rd | 4 cglasso-2.0.3/cglasso/man/select.cglasso.Rd | 44 +++--- cglasso-2.0.3/cglasso/man/summary.cglasso.Rd | 44 +++--- cglasso-2.0.3/cglasso/man/summary.datacggm.Rd | 5 cglasso-2.0.3/cglasso/man/to_graph.Rd | 8 - cglasso-2.0.3/cglasso/src/cggm_v1.f90 | 12 - cglasso-2.0.3/cglasso/src/cggm_v2.f90 | 12 - cglasso-2.0.3/cglasso/src/cglasso_v1.f90 | 13 + cglasso-2.0.3/cglasso/src/cglasso_v2.f90 | 14 +- cglasso-2.0.3/cglasso/src/multilasso.f90 | 6 57 files changed, 694 insertions(+), 539 deletions(-)
Title: Simple Interface to 'Microsoft Graph'
Description: A simple interface to the 'Microsoft Graph' API <https://docs.microsoft.com/en-us/graph/overview>. 'Graph' is a comprehensive framework for accessing data in various online Microsoft services. Currently, this package aims to provide an R interface only to the 'Azure Active Directory' part, with a view to supporting interoperability of R and 'Azure': users, groups, registered apps and service principals. However it can be easily extended to cover other services. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureGraph versions 1.2.1 dated 2021-02-09 and 1.2.2 dated 2021-04-06
DESCRIPTION | 6 +++--- MD5 | 32 ++++++++++++++++++-------------- NAMESPACE | 2 ++ NEWS.md | 7 +++++++ R/batch.R |only R/call_graph.R | 16 ++++++++++++---- R/graph_login.R | 17 +++++++++++------ R/ms_graph.R | 8 +++++++- inst/doc/intro.Rmd | 3 +-- inst/doc/intro.html | 3 +-- man/call_batch_endpoint.Rd |only man/graph_login.Rd | 19 +++++++++++-------- man/graph_request.Rd |only man/ms_graph.Rd | 3 ++- tests/testthat/test01_auth.R | 1 + tests/testthat/test02_app_sp.R | 4 +++- tests/testthat/test03_usergrp.R | 4 +++- tests/testthat/test04_batch.R |only vignettes/intro.Rmd | 3 +-- 19 files changed, 83 insertions(+), 45 deletions(-)
Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Stefan Theussl [aut],
Cyrille Szymanski [ctb],
Florian Schwendinger [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Rsymphony versions 0.1-30 dated 2021-03-20 and 0.1-31 dated 2021-04-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/symphony.R | 3 ++- src/R_symphony.cc | 2 +- 4 files changed, 9 insertions(+), 8 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.12.1 dated 2021-02-02 and 0.12.5 dated 2021-04-06
DESCRIPTION | 14 +- MD5 | 18 +-- NEWS.md | 17 ++ README.md | 31 ++--- build/vignette.rds |binary inst/CITATION | 2 inst/doc/introduction.html | 185 ++++++++++++++++--------------- tests/testthat.R | 1 tests/testthat/test_g_autoplot2_curves.R | 10 + tests/testthat/test_g_autoplot3_points.R | 72 ++++++------ 10 files changed, 185 insertions(+), 165 deletions(-)
Title: Molecular Detection Mapping and Analysis Platform
Description: Runs a Shiny web application that merges raw 'qPCR' fluorescence data with related
metadata to visualize species presence/absence detection patterns and assess data quality.
The application calculates threshold values from raw fluorescence data using a method based
on the second derivative method, Luu-The et al (2005) <doi:10.2144/05382RR05>, and utilizes
the ‘chipPCR’ package by Rödiger, Burdukiewicz, & Schierack (2015) <doi:10.1093/bioinformatics/btv205>
to calculate Cq values. The application has the ability to connect to a custom developed MySQL
database to populate the applications interface. The application allows users to interact with
visualizations such as a dynamic map, amplification curves and standard curves, that allow for
zooming and/or filtering. It also enables the generation of customized exportable reports based
on filtered mapping data.
Author: Alka Benawra <alkabenawra@rogers.com>
Maintainer: Alka Benawra <alkabenawra@rogers.com>
Diff between MDMAPR versions 0.2.1 dated 2021-03-30 and 0.2.2 dated 2021-04-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 1 + R/shinyAppServer.R | 1 + 4 files changed, 9 insertions(+), 7 deletions(-)
Title: Working with Files from 'LexisNexis'
Description: My PhD supervisor once told me that everyone doing newspaper
analysis starts by writing code to read in files from the 'LexisNexis' newspaper
archive (retrieved e.g., from <http://www.nexis.com/> or any of the partner
sites). However, while this is a nice exercise I do recommend, not everyone has
the time. This package takes files downloaded from the newspaper archive of
'LexisNexis', reads them into R and offers functions for further processing.
Author: Johannes Gruber [aut, cre]
Maintainer: Johannes Gruber <j.gruber.1@research.gla.ac.uk>
Diff between LexisNexisTools versions 0.3.3 dated 2020-12-13 and 0.3.4 dated 2021-04-06
LexisNexisTools-0.3.3/LexisNexisTools/tests/files/SQLite.RDS |only LexisNexisTools-0.3.3/LexisNexisTools/tests/files/tidytext.RDS |only LexisNexisTools-0.3.4/LexisNexisTools/DESCRIPTION | 9 LexisNexisTools-0.3.4/LexisNexisTools/MD5 | 30 LexisNexisTools-0.3.4/LexisNexisTools/NAMESPACE | 3 LexisNexisTools-0.3.4/LexisNexisTools/NEWS.md | 6 LexisNexisTools-0.3.4/LexisNexisTools/R/LexisNexisTools.R | 28 LexisNexisTools-0.3.4/LexisNexisTools/README.md | 215 +-- LexisNexisTools-0.3.4/LexisNexisTools/build/vignette.rds |binary LexisNexisTools-0.3.4/LexisNexisTools/inst/CITATION | 4 LexisNexisTools-0.3.4/LexisNexisTools/inst/WORDLIST | 3 LexisNexisTools-0.3.4/LexisNexisTools/inst/doc/demo.Rmd | 4 LexisNexisTools-0.3.4/LexisNexisTools/inst/doc/demo.html | 557 ++-------- LexisNexisTools-0.3.4/LexisNexisTools/man/figures |only LexisNexisTools-0.3.4/LexisNexisTools/man/lnt_diff.Rd | 2 LexisNexisTools-0.3.4/LexisNexisTools/tests/testthat/test-lnt_convert.R | 31 LexisNexisTools-0.3.4/LexisNexisTools/vignettes/demo.Rmd | 4 17 files changed, 336 insertions(+), 560 deletions(-)
More information about LexisNexisTools at CRAN
Permanent link
Title: An Introduction to Statistics for Geoscientists
Description: A collection of datasets and simplified functions for an introductory (geo)statistics module at University College London. Provides functionality for compositional, directional and spatial data, including ternary diagrams, Wulff and Schmidt stereonets, and ordinary kriging interpolation. Implements logistic and (additive and centred) logratio transformations. Computes vector averages and concentration parameters for the von-Mises distribution. Includes a collection of natural and synthetic fractals, and a simulator for deterministic chaos using a magnetic pendulum example. The main purpose of these functions is pedagogical. Researchers can find more complete alternatives for these tools in other packages such as 'compositions', 'robCompositions', 'sp', 'gstat' and 'RFOC'. All the functions are written in plain R, with no compiled code and a minimal number of dependencies. Theoretical background and worked examples are available at <https://tinyurl.com/UCLgeostats/>.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between geostats versions 1.2 dated 2021-03-13 and 1.3 dated 2021-04-06
DESCRIPTION | 8 ++--- MD5 | 10 +++---- R/helper.R | 72 ++++++++++++++++++++++----------------------------- R/kriging.R | 17 ++++++------ man/colourplot.Rd | 4 +- man/semivariogram.Rd | 2 - 6 files changed, 53 insertions(+), 60 deletions(-)
Title: Phylogenetic Reconstruction and Analysis
Description: Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation. Offers methods for tree comparison, model
selection and visualization of phylogenetic networks as described in
Schliep et al. (2017) <doi:10.1111/2041-210X.12760>.
Author: Klaus Schliep [aut, cre] (<https://orcid.org/0000-0003-2941-0161>),
Emmanuel Paradis [aut] (<https://orcid.org/0000-0003-3092-2199>),
Leonardo de Oliveira Martins [aut]
(<https://orcid.org/0000-0001-5247-1320>),
Alastair Potts [aut],
Tim W. White [aut],
Cyrill Stachniss [ctb],
Michelle Kendall [ctb],
Keren Halabi [ctb],
Richel Bilderbeek [ctb],
Kristin Winchell [ctb],
Liam Revell [ctb],
Mike Gilchrist [ctb],
Jeremy Beaulieu [ctb],
Brian O'Meara [ctb],
Long Qu [ctb]
Maintainer: Klaus Schliep <klaus.schliep@gmail.com>
Diff between phangorn versions 2.6.2 dated 2021-03-22 and 2.6.3 dated 2021-04-06
phangorn-2.6.2/phangorn/TODO |only phangorn-2.6.3/phangorn/DESCRIPTION | 102 +- phangorn-2.6.3/phangorn/MD5 | 88 +- phangorn-2.6.3/phangorn/NEWS | 17 phangorn-2.6.3/phangorn/R/Densi.R | 2 phangorn-2.6.3/phangorn/R/RcppExports.R | 8 phangorn-2.6.3/phangorn/R/ancestral_pml.R | 5 phangorn-2.6.3/phangorn/R/bab.R | 6 phangorn-2.6.3/phangorn/R/bootstrap.R | 127 ++- phangorn-2.6.3/phangorn/R/codonTest.R | 2 phangorn-2.6.3/phangorn/R/discrete.gamma.R | 6 phangorn-2.6.3/phangorn/R/distTree.R | 6 phangorn-2.6.3/phangorn/R/fitch64.R | 30 phangorn-2.6.3/phangorn/R/networx.R | 2 phangorn-2.6.3/phangorn/R/parsimony.R | 50 - phangorn-2.6.3/phangorn/R/phylo.R | 10 phangorn-2.6.3/phangorn/R/pmlPart.R | 69 + phangorn-2.6.3/phangorn/R/read.phyDat.R | 2 phangorn-2.6.3/phangorn/R/simSeq.R | 5 phangorn-2.6.3/phangorn/R/transferBootstrap.R |only phangorn-2.6.3/phangorn/build/vignette.rds |binary phangorn-2.6.3/phangorn/inst/doc/AdvancedFeatures.html | 202 ++--- phangorn-2.6.3/phangorn/inst/doc/Ancestral.R | 6 phangorn-2.6.3/phangorn/inst/doc/Ancestral.Rmd | 3 phangorn-2.6.3/phangorn/inst/doc/Ancestral.html | 149 +--- phangorn-2.6.3/phangorn/inst/doc/IntertwiningTreesAndNetworks.html | 352 ++++----- phangorn-2.6.3/phangorn/inst/doc/Networx.html | 154 +--- phangorn-2.6.3/phangorn/inst/doc/Trees.html | 360 ++++------ phangorn-2.6.3/phangorn/inst/tinytest/test_dist_tree.R | 2 phangorn-2.6.3/phangorn/man/as.networx.Rd | 2 phangorn-2.6.3/phangorn/man/bootstrap.pml.Rd | 33 phangorn-2.6.3/phangorn/man/codonTest.Rd | 2 phangorn-2.6.3/phangorn/man/densiTree.Rd | 2 phangorn-2.6.3/phangorn/man/discrete.gamma.Rd | 6 phangorn-2.6.3/phangorn/man/maxCladeCred.Rd | 2 phangorn-2.6.3/phangorn/man/parsimony.Rd | 2 phangorn-2.6.3/phangorn/man/plotBS.Rd |only phangorn-2.6.3/phangorn/man/pmlPart.Rd | 3 phangorn-2.6.3/phangorn/man/read.phyDat.Rd | 2 phangorn-2.6.3/phangorn/man/simSeq.Rd | 5 phangorn-2.6.3/phangorn/src/Fitch.h | 2 phangorn-2.6.3/phangorn/src/RcppExports.cpp | 67 - phangorn-2.6.3/phangorn/src/fitch64.cpp | 13 phangorn-2.6.3/phangorn/src/phangorn_utils.cpp | 40 + phangorn-2.6.3/phangorn/vignettes/Ancestral.Rmd | 3 phangorn-2.6.3/phangorn/vignettes/phangorn.bib | 11 phangorn-2.6.3/phangorn/vignettes/seqLogo.png |only 47 files changed, 971 insertions(+), 989 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to
work with remote database tables as if they are in-memory data frames.
Basic features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Maximilian Girlich [aut],
Edgar Ruiz [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dbplyr versions 2.1.0 dated 2021-02-03 and 2.1.1 dated 2021-04-06
DESCRIPTION | 26 +++--- MD5 | 101 +++++++++++++-------------- NAMESPACE | 5 + NEWS.md | 17 ++++ R/backend-.R | 1 R/backend-access.R | 17 ++++ R/backend-hive.R | 2 R/backend-impala.R | 2 R/backend-mssql.R | 4 - R/backend-mysql.R | 2 R/backend-oracle.R | 2 R/backend-snowflake.R |only R/backend-teradata.R | 2 R/db-sql.R | 12 +-- R/partial-eval.R | 26 ++++++ R/schema.R | 2 R/translate-sql-window.R | 4 - R/verb-group_by.R | 6 + build/dbplyr.pdf |binary inst/doc/backend-2.Rmd | 4 - inst/doc/backend-2.html | 4 - man/arrange.tbl_lazy.Rd | 2 man/backend-snowflake.Rd |only man/count.tbl_lazy.Rd | 2 man/distinct.tbl_lazy.Rd | 2 man/filter.tbl_lazy.Rd | 2 man/group_by.tbl_lazy.Rd | 2 man/mutate.tbl_lazy.Rd | 2 man/select.tbl_lazy.Rd | 2 man/src_dbi.Rd | 2 man/summarise.tbl_lazy.Rd | 2 tests/testthat/_snaps/backend-.md | 25 ++++-- tests/testthat/_snaps/backend-hive.md | 4 - tests/testthat/_snaps/backend-impala.md | 4 - tests/testthat/_snaps/backend-mssql.md | 13 +-- tests/testthat/_snaps/backend-mysql.md | 4 - tests/testthat/_snaps/backend-oracle.md | 4 - tests/testthat/_snaps/backend-teradata.md | 4 - tests/testthat/_snaps/partial-eval.md | 38 ++++++++++ tests/testthat/_snaps/verb-arrange.md | 15 ---- tests/testthat/_snaps/verb-count.md | 1 tests/testthat/test-backend-.R | 9 +- tests/testthat/test-backend-access.R | 14 +++ tests/testthat/test-backend-hive.R | 2 tests/testthat/test-backend-impala.R | 2 tests/testthat/test-backend-mssql.R | 6 - tests/testthat/test-backend-mysql.R | 2 tests/testthat/test-backend-oracle.R | 2 tests/testthat/test-backend-teradata.R | 2 tests/testthat/test-partial-eval.R | 33 ++++++++ tests/testthat/test-test-backend-snowflake.R |only tests/testthat/test-verb-group_by.R | 7 + vignettes/backend-2.Rmd | 4 - 53 files changed, 305 insertions(+), 147 deletions(-)
Title: Advanced Basketball Statistics
Description: Provides different functionalities and calculations used in the world of basketball to analyze the statistics of the players, the statistics of the teams, the statistics of the quintets and the statistics of the plays. For more details of the calculations included in the package can be found in the book Basketball on Paper written by Dean Oliver.
Author: Francisco Javier Cantero [aut, cre],
Juan Jose Cuadrado [aut],
Universidad de Alcala de Henares [aut]
Maintainer: Francisco Javier Cantero <fco.cantero@edu.uah.es>
Diff between AdvancedBasketballStats versions 1.0.0 dated 2021-02-16 and 1.0.1 dated 2021-04-06
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- R/individuals_games_adder.R | 20 ++++++++++++++++++++ R/lineups_data_adjustment.R | 6 +++--- R/play_games_adder.R | 9 +++++++++ inst/doc/BasketballAdvancedStats.html | 8 ++++---- vignettes/pandoc1ad4379a6e6.html |only 7 files changed, 47 insertions(+), 17 deletions(-)
More information about AdvancedBasketballStats at CRAN
Permanent link
Title: Retrieving Information of Proteins from Uniprot
Description: Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.
Author: Mohamed Soudy [aut, cre],
Ali Mostafa [aut]
Maintainer: Mohamed Soudy <MohmedSoudy2009@gmail.com>
Diff between UniprotR versions 2.0.5 dated 2021-03-09 and 2.0.6 dated 2021-04-06
DESCRIPTION | 7 ++---- MD5 | 11 +++++---- R/PathwayAnalysis.R | 58 ++++++++++++++++++++++++++-------------------------- R/PlotGoInfo.R | 6 +++-- R/PlotGoterms.R | 29 ++++++++++++++++++++++++++ man/PlotGoInfo.Rd | 2 - man/PlotGoterms.Rd |only 7 files changed, 72 insertions(+), 41 deletions(-)
Title: R Commander Plug-in for Risk Demonstration
Description: R Commander plug-in to demonstrate various actuarial and financial risks. It includes valuation of bonds and stocks, portfolio optimization, classical ruin theory, demography and epidemic.
Author: Arto Luoma
Maintainer: Arto Luoma <arto.luoma@wippies.com>
Diff between RcmdrPlugin.RiskDemo versions 2.0 dated 2018-10-03 and 3.0 dated 2021-04-06
RcmdrPlugin.RiskDemo-2.0/RcmdrPlugin.RiskDemo/R/getStockList.R |only RcmdrPlugin.RiskDemo-2.0/RcmdrPlugin.RiskDemo/R/loadStockData.R |only RcmdrPlugin.RiskDemo-2.0/RcmdrPlugin.RiskDemo/R/print.lca.R |only RcmdrPlugin.RiskDemo-2.0/RcmdrPlugin.RiskDemo/R/readStockData.R |only RcmdrPlugin.RiskDemo-2.0/RcmdrPlugin.RiskDemo/data/countries.abbr.rda |only RcmdrPlugin.RiskDemo-2.0/RcmdrPlugin.RiskDemo/data/countries.rda |only RcmdrPlugin.RiskDemo-2.0/RcmdrPlugin.RiskDemo/man/countries.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/ChangeLog | 32 +++ RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/DESCRIPTION | 17 +- RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/MD5 | 83 ++++++---- RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/NAMESPACE | 8 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/bondDialog.R | 2 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/casesDialog.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/casesDialogFin.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/computeLifetable.R | 4 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/covidSmooth.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/drawBars.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/drawBarsFin.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/drawIncidence.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/drawIncidenceFin.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/drawPositiveRate.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/drawTests.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/estimateDemogmodel.R | 8 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/forecastDemogdata.R | 2 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/forecastDialogFin.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/globals.R | 59 +++---- RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/incidenceDialog.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/incidenceDialogFin.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/loglikCovid.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/plot.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/plotDemogdata.R | 14 - RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/plotForecast.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/repel.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/testsDialog.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/updateCovidData.R |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/R/viewDemogdata.R | 16 - RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/countries.mort.rda |binary RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/dataCovid.rda |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/dataCovidFin.rda |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/datalist | 5 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/fin.fcast.rda |binary RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/fin.lca.rda |binary RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/fin.rda |binary RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/params.rda |binary RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/data/popRegionsFin.rda |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/inst/etc/menus.txt | 64 ++++--- RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/RcmdrPlugin.RiskDemo-internal.Rd | 14 + RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/RcmdrPlugin.RiskDemo-package.Rd | 6 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/countries.mort.Rd | 6 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/covidSmooth.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/dataCovid.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/dataCovidFin.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/drawBars.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/drawBarsFin.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/drawIncidence.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/drawIncidenceFin.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/drawPositiveRate.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/drawTests.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/loglikCovid.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/params.Rd | 4 RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/plotForecast.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/plotR.Rd |only RcmdrPlugin.RiskDemo-3.0/RcmdrPlugin.RiskDemo/man/popRegionsFin.Rd |only 63 files changed, 200 insertions(+), 144 deletions(-)
More information about RcmdrPlugin.RiskDemo at CRAN
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Title: Scoring the EQ-5D Descriptive System
Description: EQ-5D is a standard instrument (<https://euroqol.org/eq-5d-instruments/>) that measures the quality of life
often used in clinical and economic evaluations of health care technologies. Both adult versions of EQ-5D (EQ-5D-3L and EQ-5D-5L)
contain a descriptive system and visual analog scale. The descriptive system measures the patient's health in 5 dimensions:
the 5L versions has 5 levels and 3L version has 3 levels. The descriptive system scores are usually converted to index values
using country specific values sets (that incorporates the country preferences). This package allows the calculation of both descriptive system
scores to the index value scores. The value sets for EQ-5D-3L are from the references mentioned in the website <https://euroqol.org/eq-5d-instruments/eq-5d-3l-about/valuation/>
The value sets for EQ-5D-3L for a total of 31 countries are used for the valuation (see the user guide for a complete list of references).
The value sets for EQ-5D-5L are obtained from references mentioned in the <https://euroqol.org/eq-5d-instruments/eq-5d-5l-about/valuation-standard-value-sets/> and other sources.
The value sets for EQ-5D-5L for a total of 17 countries are used for the valuation (see the user guide for a complete list of references).
The package can also be used to map 5L scores to 3L index values for 10 countries: Denmark, France, Germany, Japan, Netherlands, Spain, Thailand, UK, USA, and Zimbabwe.
The value set and method for mapping are obtained from Van Hout et al (2012) <doi: 10.1016/j.jval.2012.02.008>.
Author: Sheeja Manchira Krishnan [aut, cre]
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>
Diff between valueEQ5D versions 0.6.1 dated 2020-11-03 and 0.7.1 dated 2021-04-06
DESCRIPTION | 8 MD5 | 32 +- R/data.R | 2 R/eq5d.R | 6 R/sysdata.rda |binary README.md | 16 + build/vignette.rds |binary data/EQ5D3L_indexvalues.df.rda |binary data/EQ5D3L_tariffs_TTO.df.rda |binary data/EQ5D5L_indexvalues.df.rda |binary inst/doc/User_Guide.R | 2 inst/doc/User_Guide.Rmd | 11 - inst/doc/User_Guide.html | 448 ++++++++++------------------------------- man/EQ5D3L_tariffs_TTO.df.Rd | 2 man/EQ5D5L_tariffs.df.Rd | 2 tests/testthat/test-eq5d.R | 18 + vignettes/User_Guide.Rmd | 11 - 17 files changed, 182 insertions(+), 376 deletions(-)
Title: Web Interface to 'IsoplotR'
Description: Provides a graphical user interface to the 'IsoplotR' package for radiometric geochronology. The GUI runs in an internet browser and can either be used offline, or hosted on a server to provide online access to the 'IsoplotR' toolbox.
Author: Pieter Vermeesch [aut, cre],
Tim Band [ctb]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotRgui versions 3.7 dated 2021-03-15 and 3.8 dated 2021-04-06
DESCRIPTION | 11 - MD5 | 98 +++++++------- R/IsoplotR.R | 33 +++- build/CRAN.md | 7 + build/docker.md | 7 + build/docker.sh | 10 - build/git.md | 7 + inst/www/css/IsoplotR.css | 4 inst/www/help/Ar-Ar.html | 22 +-- inst/www/help/Lu-Hf.html | 30 ++-- inst/www/help/Rb-Sr.html | 34 ++-- inst/www/help/Re-Os.html | 30 ++-- inst/www/help/Sm-Nd.html | 30 ++-- inst/www/help/Th-U.html | 44 +++--- inst/www/help/U-Pb.html | 86 ++++++------ inst/www/help/ages.html | 12 - inst/www/help/concordia.html | 20 +- inst/www/help/evolution.html | 6 inst/www/help/fissiontracks.html | 18 +- inst/www/help/isochron.html | 10 - inst/www/help/other.html | 10 - inst/www/help/spectrum.html | 4 inst/www/home/map.html | 64 +++++++-- inst/www/home/world.svg | 63 +++++++-- inst/www/index.html | 10 - inst/www/js/IsoplotR.js | 28 +++- inst/www/js/settings.json | 30 ++-- inst/www/locales/en/contextual_help.json | 10 - inst/www/locales/en/dictionary_id.json | 57 ++++---- inst/www/locales/en/home_id.json | 18 +- inst/www/locales/es/dictionary_id.json | 182 +++++++++++++++++++++++++- inst/www/locales/zh_Hans/contextual_help.json | 2 inst/www/locales/zh_Hans/dictionary_id.json | 40 ++--- inst/www/locales/zh_Hans/home_id.json | 16 +- inst/www/options/CAD.html | 26 +-- inst/www/options/KDE.html | 28 ++-- inst/www/options/Pb-Pb.html | 4 inst/www/options/Th-U.html | 8 - inst/www/options/U-Pb.html | 14 +- inst/www/options/ages.html | 20 +- inst/www/options/average.html | 24 +-- inst/www/options/concordia.html | 4 inst/www/options/fissiontracks.html | 2 inst/www/options/isochron.html | 26 ++- inst/www/options/other.html | 2 inst/www/options/radial.html | 34 ++-- inst/www/options/spectrum.html | 2 inst/www/version.txt | 2 man/IsoplotR.Rd | 5 man/daemon.Rd | 5 50 files changed, 796 insertions(+), 463 deletions(-)
More information about selection.index at CRAN
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Title: Convert Between Bibliography Formats
Description: Converts between a number of bibliography formats,
including 'BibTeX', 'BibLaTeX' and 'Bibentry'. Includes a port of the
'bibutils' utilities by Chris Putnam
<https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in
'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] (R port, modifications to bibutils' C
code),
Chris Putman [aut] (src/*, author of the bibutils libraries,
https://sourceforge.net/projects/bibutils/),
Richard Mathar [ctb] (src/addsout.c),
Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c)
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between rbibutils versions 2.0 dated 2020-11-18 and 2.1 dated 2021-04-06
DESCRIPTION | 9 +- MD5 | 53 ++++++++------ NEWS.md | 24 ++++++ R/bib.R | 49 ++++++++++--- R/bibentry.R | 11 ++ R/convert.R | 43 +++++------ R/import.R |only README.md | 45 +++++++++++- TODO | 16 ++-- build/partial.rdb |binary inst/bib/auto/latin1accents_utf8c.el |only inst/bib/eaf_Grunert01.bib |only inst/bib/ex0.bibtex | 3 inst/bib/latin1accents_utf8.bib | 7 + inst/bib/latin1accents_utf8a.bib |only inst/bib/latin1accents_utf8b.bib |only man/bibConvert.Rd | 59 ++++++++++++--- man/rbibutils-package.Rd | 130 +++++++++++++++++++++++++++++++---- man/readBib.Rd | 100 +++++++++++++++++++++++++- src/bib2be.c |only src/bibcore.c | 42 +++++++++-- src/bibentrydirectout.c |only src/bibentryout.c | 49 +++++++++++++ src/bibprog.c | 7 + src/bibtexdirectin.c |only src/bibutils.h | 1 src/init.c | 2 src/str_conv.c | 2 tests/testthat/bibacc_1.rds |only tests/testthat/bibacc_2.rds |only tests/testthat/bibacc_3.rds |only tests/testthat/eaf_Grunert01.rds |only tests/testthat/test-bib.R |only tests/testthat/test-convert.R | 11 ++ 34 files changed, 546 insertions(+), 117 deletions(-)
Title: Textual Statistics for the Quantitative Analysis of Textual Data
Description: Textual statistics functions formerly in the 'quanteda' package.
Textual statistics for characterizing and comparing textual data. Includes
functions for measuring term and document frequency, the co-occurrence of
words, similarity and distance between features and documents, feature entropy,
keyword occurrence, readability, and lexical diversity. These functions
extend the 'quanteda' package and are specially designed for sparse textual data.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Jiong Wei Lua [aut],
Jouni Kuha [aut] (<https://orcid.org/0000-0002-1156-8465>),
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda.textstats versions 0.93 dated 2021-03-15 and 0.94 dated 2021-04-06
DESCRIPTION | 6 - MD5 | 32 ++++---- NAMESPACE | 4 - NEWS.md | 5 + R/textstat_frequency.R | 26 +++++- R/textstat_readability.R | 2 R/textstat_simil.R | 67 ++++++++++++++++- R/utils.R | 2 build/partial.rdb |binary inst/WORDLIST | 1 man/textstat_frequency.Rd | 26 ++++-- man/textstat_proxy-class.Rd | 36 +++++++++ tests/testthat/test-textstat_collocations.R | 4 - tests/testthat/test-textstat_frequency.R | 10 +- tests/testthat/test-textstat_lexdiv.R | 110 ++++++++++++++-------------- tests/testthat/test-textstat_proxy.R | 31 +++---- tests/testthat/test-textstat_readability.R | 3 17 files changed, 253 insertions(+), 112 deletions(-)
More information about quanteda.textstats at CRAN
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Title: Plots for the Quantitative Analysis of Textual Data
Description: Plotting functions for visualising textual data. Extends 'quanteda' and
related packages with plot methods designed specifically for text data, textual statistics,
and models fit to textual data. Plot types include word clouds, lexical dispersion plots,
scaling plots, network visualisations, and word 'keyness' plots.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Adam Obeng [aut] (<https://orcid.org/0000-0002-2906-4775>),
Stefan Müller [aut] (<https://orcid.org/0000-0002-6315-4125>),
Akitaka Matsuo [aut] (<https://orcid.org/0000-0002-3323-6330>),
Ian Fellows [cph] (authored wordcloud C source code (modified)),
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda.textplots versions 0.92 dated 2021-02-18 and 0.94 dated 2021-04-06
DESCRIPTION | 12 +++---- MD5 | 34 +++++++++++----------- NAMESPACE | 5 +-- NEWS.md | 11 +++++-- R/textplot_keyness.R | 24 ++++++++++----- R/textplot_network.R | 19 +++++++++--- R/textplot_wordcloud.R | 33 ++++++++++++++------- R/textplot_xray.R | 47 +++++++++++++++---------------- README.md | 2 - inst/WORDLIST | 2 + man/textplot_keyness.Rd | 24 ++++++++++----- man/textplot_wordcloud.Rd | 33 ++++++++++++++------- man/textplot_xray.Rd | 2 + tests/testthat/test-textplot_keyness.R | 11 +++++-- tests/testthat/test-textplot_network.R | 40 +++++++++++++------------- tests/testthat/test-textplot_scale1d.R | 7 ++-- tests/testthat/test-textplot_wordcloud.R | 23 +++++++++------ tests/testthat/test-textplot_xray.R | 30 ++++++++----------- 18 files changed, 215 insertions(+), 144 deletions(-)
More information about quanteda.textplots at CRAN
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Title: Scaling Models and Classifiers for Textual Data
Description: Scaling models and classifiers for sparse matrix objects representing
textual data in the form of a document-feature matrix. Includes original
implementations of 'Laver', 'Benoit', and Garry's (2003) <doi:10.1017/S0003055403000698>,
'Wordscores' model, Perry and 'Benoit's' (2017) <arXiv:1710.08963> class affinity scaling model,
and 'Slapin' and 'Proksch's' (2008) <doi:10.1111/j.1540-5907.2008.00338.x> 'wordfish'
model, as well as methods for correspondence analysis, latent semantic analysis,
and fast Naive Bayes and linear 'SVMs' specially designed for sparse textual data.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Patrick O. Perry [aut] (<https://orcid.org/0000-0001-7460-127X>),
Benjamin Lauderdale [aut] (<https://orcid.org/0000-0003-3090-0969>),
Johannes Gruber [aut] (<https://orcid.org/0000-0001-9177-1772>),
William Lowe [aut] (<https://orcid.org/0000-0002-1549-6163>),
Vikas Sindhwani [cph] (authored svmlin C++ source code),
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda.textmodels versions 0.9.3 dated 2021-03-07 and 0.9.4 dated 2021-04-06
quanteda.textmodels-0.9.3/quanteda.textmodels/data/data_dfm_lbgexample.rda |only quanteda.textmodels-0.9.3/quanteda.textmodels/man/data_dfm_lbgexample.Rd |only quanteda.textmodels-0.9.4/quanteda.textmodels/DESCRIPTION | 9 - quanteda.textmodels-0.9.4/quanteda.textmodels/MD5 | 51 ++++---- quanteda.textmodels-0.9.4/quanteda.textmodels/NEWS.md | 4 quanteda.textmodels-0.9.4/quanteda.textmodels/R/data-documentation.R | 17 -- quanteda.textmodels-0.9.4/quanteda.textmodels/R/textmodel_affinity.R | 6 quanteda.textmodels-0.9.4/quanteda.textmodels/R/textmodel_ca.R | 4 quanteda.textmodels-0.9.4/quanteda.textmodels/R/textmodel_nb.R | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/R/textmodel_wordfish.R | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/R/textmodel_wordscores.R | 4 quanteda.textmodels-0.9.4/quanteda.textmodels/R/textplot_influence.R | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/R/utils.R | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/README.md | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/build/partial.rdb |binary quanteda.textmodels-0.9.4/quanteda.textmodels/inst/doc/textmodel_performance.R | 11 - quanteda.textmodels-0.9.4/quanteda.textmodels/inst/doc/textmodel_performance.Rmd | 15 -- quanteda.textmodels-0.9.4/quanteda.textmodels/inst/doc/textmodel_performance.html | 62 +++++----- quanteda.textmodels-0.9.4/quanteda.textmodels/man/force_conformance.Rd | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/man/influence.predict.textmodel_affinity.Rd | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/man/predict.textmodel_nb.Rd | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/man/predict.textmodel_wordscores.Rd | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/man/textmodel_affinity.Rd | 4 quanteda.textmodels-0.9.4/quanteda.textmodels/man/textmodel_wordfish.Rd | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/man/textmodel_wordscores.Rd | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/man/textplot_influence.Rd | 2 quanteda.textmodels-0.9.4/quanteda.textmodels/tests/spelling.Rout.save |only quanteda.textmodels-0.9.4/quanteda.textmodels/vignettes/textmodel_performance.Rmd | 15 -- 28 files changed, 105 insertions(+), 121 deletions(-)
More information about quanteda.textmodels at CRAN
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Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and ngrams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Paul Nulty [aut] (<https://orcid.org/0000-0002-7214-4666>),
Adam Obeng [aut] (<https://orcid.org/0000-0002-2906-4775>),
Stefan Müller [aut] (<https://orcid.org/0000-0002-6315-4125>),
Akitaka Matsuo [aut] (<https://orcid.org/0000-0002-3323-6330>),
William Lowe [aut] (<https://orcid.org/0000-0002-1549-6163>),
Christian Müller [ctb],
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 2.1.2 dated 2020-09-23 and 3.0.0 dated 2021-04-06
quanteda-2.1.2/quanteda/R/View.R |only quanteda-2.1.2/quanteda/R/corpus-methods-base.R |only quanteda-2.1.2/quanteda/R/corpus-methods-quanteda.R |only quanteda-2.1.2/quanteda/R/dictionary_edit.R |only quanteda-2.1.2/quanteda/R/directionchange-functions.R |only quanteda-2.1.2/quanteda/R/metadoc.R |only quanteda-2.1.2/quanteda/R/nscrabble.R |only quanteda-2.1.2/quanteda/R/nsyllable.R |only quanteda-2.1.2/quanteda/R/textplot_keyness.R |only quanteda-2.1.2/quanteda/R/textplot_network.R |only quanteda-2.1.2/quanteda/R/textplot_wordcloud.R |only quanteda-2.1.2/quanteda/R/textplot_xray.R |only quanteda-2.1.2/quanteda/R/textstat-methods.R |only quanteda-2.1.2/quanteda/R/textstat_collocations.R |only quanteda-2.1.2/quanteda/R/textstat_entropy.R |only quanteda-2.1.2/quanteda/R/textstat_frequency.R |only quanteda-2.1.2/quanteda/R/textstat_keyness.R |only quanteda-2.1.2/quanteda/R/textstat_lexdiv.R |only quanteda-2.1.2/quanteda/R/textstat_readability.R |only quanteda-2.1.2/quanteda/R/textstat_simil.R |only quanteda-2.1.2/quanteda/R/textstat_summary.R |only quanteda-2.1.2/quanteda/R/tokens-methods-base.R |only quanteda-2.1.2/quanteda/data/data_char_wordlists.rda |only quanteda-2.1.2/quanteda/data/data_int_syllables.rda |only quanteda-2.1.2/quanteda/man/View.Rd |only quanteda-2.1.2/quanteda/man/as.corpus.Rd |only quanteda-2.1.2/quanteda/man/as.igraph.Rd |only quanteda-2.1.2/quanteda/man/as.matrix.textstat_simil_sparse.Rd |only quanteda-2.1.2/quanteda/man/as.network.Rd |only quanteda-2.1.2/quanteda/man/check_font.Rd |only quanteda-2.1.2/quanteda/man/compute_lexdiv_stats.Rd |only quanteda-2.1.2/quanteda/man/compute_mattr.Rd |only quanteda-2.1.2/quanteda/man/compute_msttr.Rd |only quanteda-2.1.2/quanteda/man/corpus_trimsentences.Rd |only quanteda-2.1.2/quanteda/man/create.Rd |only quanteda-2.1.2/quanteda/man/dfm_split_hyphenated_features.Rd |only quanteda-2.1.2/quanteda/man/diag2na.Rd |only quanteda-2.1.2/quanteda/man/dictionary_edit.Rd |only 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quanteda-3.0.0/quanteda/tests/testthat/test-quanteda_options.R | 50 quanteda-3.0.0/quanteda/tests/testthat/test-spacyr-methods.R | 2 quanteda-3.0.0/quanteda/tests/testthat/test-stopwords.R | 4 quanteda-3.0.0/quanteda/tests/testthat/test-summary.R |only quanteda-3.0.0/quanteda/tests/testthat/test-texts.R | 99 - quanteda-3.0.0/quanteda/tests/testthat/test-tokens.R | 105 - quanteda-3.0.0/quanteda/tests/testthat/test-tokens_chunk.R | 12 quanteda-3.0.0/quanteda/tests/testthat/test-tokens_compound.R | 69 - quanteda-3.0.0/quanteda/tests/testthat/test-tokens_group.R | 136 +- quanteda-3.0.0/quanteda/tests/testthat/test-tokens_lookup.R | 3 quanteda-3.0.0/quanteda/tests/testthat/test-tokens_ngrams.R | 22 quanteda-3.0.0/quanteda/tests/testthat/test-tokens_recompile.R | 5 quanteda-3.0.0/quanteda/tests/testthat/test-tokens_replace.R | 6 quanteda-3.0.0/quanteda/tests/testthat/test-tokens_sample.R |only quanteda-3.0.0/quanteda/tests/testthat/test-tokens_segment.R | 2 quanteda-3.0.0/quanteda/tests/testthat/test-tokens_select.R | 178 +- quanteda-3.0.0/quanteda/tests/testthat/test-tokens_split.R | 4 quanteda-3.0.0/quanteda/tests/testthat/test-tokens_subset.R | 19 quanteda-3.0.0/quanteda/tests/testthat/test-utils.R | 121 - quanteda-3.0.0/quanteda/tests/testthat/test-validator.R |only quanteda-3.0.0/quanteda/tests/testthat/test-wordstem.R | 10 quanteda-3.0.0/quanteda/vignettes/images |only quanteda-3.0.0/quanteda/vignettes/quickstart.Rmd | 110 + 343 files changed, 5420 insertions(+), 5915 deletions(-)
Title: Factorization of Sparse Counts Matrices Through Poisson
Likelihood
Description: Creates a low-rank factorization of a sparse counts matrix by maximizing Poisson likelihood with l1/l2 regularization
with all non-negative latent factors (e.g. for recommender systems or topic modeling) (Cortes, (2018) <arXiv:1811.01908>).
Similar to hierarchical Poisson factorization, but follows an optimization-based approach with regularization instead of a
hierarchical structure, and is fit through gradient-based methods instead of variational inference.
Author: David Cortes [aut, cre, cph], Jean-Sebastien Roy [cph], Stephen Nash [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between poismf versions 0.2.7 dated 2021-01-08 and 0.3.0 dated 2021-04-06
DESCRIPTION | 8 +- MD5 | 24 +++---- R/poismf.R | 76 +++++++++++++++++-------- configure | 18 ++--- configure.ac | 2 man/poismf.Rd | 31 +++++++--- src/nonnegcg.c | 6 + src/poismf.c | 173 ++++++++++++++++++++++++++++++++++++++++----------------- src/poismf.h | 15 ++-- src/pred.c | 50 +++++++++------- src/rwrapper.c | 32 ++++++---- src/tnc.c | 63 +++++++++++++++----- src/topN.c | 2 13 files changed, 334 insertions(+), 166 deletions(-)
Title: Computation and Visualization of Package Download Counts and
Percentiles
Description: Compute and visualize the cross-sectional and longitudinal number
and rank percentile of package downloads from RStudio's CRAN mirror.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between packageRank versions 0.4.0 dated 2021-03-01 and 0.4.1 dated 2021-04-06
packageRank-0.4.0/packageRank/man/figures/README-counts_ranks-1.png |only packageRank-0.4.0/packageRank/man/figures/README-skew_sat-1.png |only packageRank-0.4.0/packageRank/man/figures/README-skew_wed-1.png |only packageRank-0.4.1/packageRank/DESCRIPTION | 11 packageRank-0.4.1/packageRank/MD5 | 73 +- packageRank-0.4.1/packageRank/NAMESPACE | 4 packageRank-0.4.1/packageRank/NEWS | 23 packageRank-0.4.1/packageRank/R/annualDownloads.R |only packageRank-0.4.1/packageRank/R/bioconductorDownloads.R | 49 - packageRank-0.4.1/packageRank/R/cranDownloads.R | 272 +++++----- packageRank-0.4.1/packageRank/R/cranPackageSize.R | 8 packageRank-0.4.1/packageRank/R/logDate.R | 11 packageRank-0.4.1/packageRank/R/packageDistribution.R | 2 packageRank-0.4.1/packageRank/R/packageRank.R | 2 packageRank-0.4.1/packageRank/R/packageVersionPercent.R | 2 packageRank-0.4.1/packageRank/R/populationPlot.R | 17 packageRank-0.4.1/packageRank/R/sizeFilter.R | 15 packageRank-0.4.1/packageRank/R/utc.R | 2 packageRank-0.4.1/packageRank/R/weeklyDownloads.R |only packageRank-0.4.1/packageRank/README.md | 52 + packageRank-0.4.1/packageRank/man/annualDownloads.Rd |only packageRank-0.4.1/packageRank/man/figures/README-ci-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-cranDownloads_growth_curves-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-cranDownloads_viz1-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-cranDownloads_viz2-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-cranDownloads_viz3-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-lowess-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-motivation_code-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-null_packages-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-packageDistribution_sat_code-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-packageDistribution_wed_code-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-packageRank_plot_code_sat-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-packageRank_plot_code_wed-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-pkg_release_date-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-pop_plot_code-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-r_downloads-1.png |binary packageRank-0.4.1/packageRank/man/figures/README-r_release_date-1.png |binary packageRank-0.4.1/packageRank/man/plot.annualDownloads.Rd |only packageRank-0.4.1/packageRank/man/plot.bioconductorDownloads.Rd | 8 packageRank-0.4.1/packageRank/man/plot.cranDownloads.Rd | 6 packageRank-0.4.1/packageRank/man/plot.weeklyDownloads.Rd |only packageRank-0.4.1/packageRank/man/weeklyDownloads.Rd |only 42 files changed, 318 insertions(+), 239 deletions(-)
More information about MultiHorizonSPA at CRAN
Permanent link
Title: Summary Statistics for Histogram/Count Data
Description: In some cases you will have data in a histogram format, where
you have a vector of all possible observations, and a vector of how many
times each observation appeared. You could expand this into a single 1D
vector, but this may not be advisable if the counts are extremely large.
'HistDat' allows for the calculation of summary statistics without the need
for expanding your data.
Author: Michael Milton
Maintainer: Michael Milton <michael.r.milton@gmail.com>
Diff between HistDat versions 0.1.0 dated 2021-04-02 and 0.2.0 dated 2021-04-06
HistDat-0.1.0/HistDat/man/sum-HistDat-method.Rd |only HistDat-0.2.0/HistDat/DESCRIPTION | 8 HistDat-0.2.0/HistDat/MD5 | 33 +- HistDat-0.2.0/HistDat/NAMESPACE | 10 HistDat-0.2.0/HistDat/NEWS.md |only HistDat-0.2.0/HistDat/R/histogram.R | 197 ++++++++++-- HistDat-0.2.0/HistDat/inst/doc/histdat.R | 2 HistDat-0.2.0/HistDat/inst/doc/histdat.Rmd | 10 HistDat-0.2.0/HistDat/inst/doc/histdat.html | 8 HistDat-0.2.0/HistDat/man/HistDat-class.Rd | 6 HistDat-0.2.0/HistDat/man/HistDat-package.Rd | 8 HistDat-0.2.0/HistDat/man/HistDat.Rd |only HistDat-0.2.0/HistDat/man/c-HistDat-method.Rd |only HistDat-0.2.0/HistDat/man/mean-HistDat-method.Rd | 5 HistDat-0.2.0/HistDat/man/median-HistDat-method.Rd | 5 HistDat-0.2.0/HistDat/man/quantile-HistDat-method.Rd | 14 HistDat-0.2.0/HistDat/man/sort-HistDat-method.Rd |only HistDat-0.2.0/HistDat/man/sub-HistDat-ANY-ANY-ANY-method.Rd |only HistDat-0.2.0/HistDat/man/sum.HistDat.Rd |only HistDat-0.2.0/HistDat/tests/testthat/test-histogram.R | 84 ++++- HistDat-0.2.0/HistDat/vignettes/histdat.Rmd | 10 21 files changed, 310 insertions(+), 90 deletions(-)
Title: Fast Implementation of the Diffusion Decision Model
Description: Provides the probability density function (PDF) of the diffusion decision
model (DDM; e.g., Ratcliff & McKoon, 2008, <doi:10.1162/neco.2008.12-06-420>)
with across-trial variability in the drift rate.
Because the PDF of the DDM contains an infinite sum, it needs to be
approximated. 'fddm' implements all published approximations (Navarro & Fuss, 2009,
<doi:10.1016/j.jmp.2009.02.003>; Gondan, Blurton, & Kesselmeier, 2014,
<doi:10.1016/j.jmp.2014.05.002>) plus new approximations. All approximations
are implemented purely in 'C++' providing faster speed than existing packages.
Author: Kendal B. Foster [aut],
Henrik Singmann [ctb, cre] (<https://orcid.org/0000-0002-4842-3657>)
Maintainer: Henrik Singmann <singmann@gmail.com>
Diff between fddm versions 0.3-1 dated 2021-03-22 and 0.3-3 dated 2021-04-06
DESCRIPTION | 6 MD5 | 34 +- NEWS.md | 9 inst/doc/benchmark.R | 36 +- inst/doc/benchmark.Rmd | 48 +-- inst/doc/benchmark.html | 128 ++++---- inst/doc/example.html | 120 ++++---- inst/doc/math.html | 6 inst/doc/validity.R | 86 ++++- inst/doc/validity.Rmd | 86 ++++- inst/doc/validity.html | 398 ++++++++++++++------------- src/dfddm.cpp | 60 +--- src/funcs.h | 47 +-- src/helper_functions.cpp | 603 ++++++++++++++++++++++++------------------ src/sum_funcs.cpp | 3 tests/testthat/test-density.R | 275 +++++++++++++++---- vignettes/benchmark.Rmd | 48 +-- vignettes/validity.Rmd | 86 ++++- 18 files changed, 1262 insertions(+), 817 deletions(-)
Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: Provides functions for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
two public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>) and
'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>). The
trial information is transformed and stored in a database ('SQLite'
or 'MongoDB', via 'nodbi'). Functions are provided to identify de-
duplicated records, to easily find and extract variables (fields)
of interest even from complex nesting as used by the registers,
and to update previous queries that users retrieved in a database.
The package can be used for meta analysis and trend-analysis of
the design and conduct as well as results of clinical trials.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>)
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.5.1 dated 2021-03-21 and 1.5.2 dated 2021-04-06
DESCRIPTION | 7 - MD5 | 32 +++---- NEWS.md | 4 R/main.R | 86 +++++++------------- R/utils.R | 86 ++++++++++---------- README.md | 16 +-- inst/doc/ctrdata_analyse.pdf |binary inst/doc/ctrdata_install.pdf |binary inst/doc/ctrdata_retrieve.pdf |binary inst/image/README-ctrdata_results_neuroblastoma.png |binary inst/tinytest/ctrdata_euctr.R | 32 +++---- inst/tinytest/test_ctrdata_param_checks.R | 25 +---- man/ctrLoadQueryIntoDb.Rd | 2 vignettes/boxpep.png |binary vignettes/ctrdata_analyse.Rmd | 27 +++--- vignettes/ctrdata_retrieve.Rmd | 17 +++ vignettes/nb2.png |binary 17 files changed, 158 insertions(+), 176 deletions(-)
Title: MCMC for Spike and Slab Regression
Description: Spike and slab regression with a variety of residual error
distributions corresponding to Gaussian, Student T, probit, logit, SVM, and a
few others. Spike and slab regression is Bayesian regression with prior
distributions containing a point mass at zero. The posterior updates the
amount of mass on this point, leading to a posterior distribution that is
actually sparse, in the sense that if you sample from it many coefficients are
actually zeros. Sampling from this posterior distribution is an elegant way
to handle Bayesian variable selection and model averaging. See
<DOI:10.1504/IJMMNO.2014.059942> for an explanation of the Gaussian case.
Author: Steven L. Scott <steve.the.bayesian@gmail.com>
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between BoomSpikeSlab versions 1.2.3 dated 2020-05-01 and 1.2.4 dated 2021-04-06
DESCRIPTION | 12 ++++---- MD5 | 15 +++++----- NAMESPACE | 1 R/lm.spike.R | 47 +++++++++++++++++++++++++++----- inst/tests/tests/testthat/test-nnet.R | 22 ++++---------- inst/tests/testthat/test-nnet.R | 22 ++++---------- man/plot.lm.spike.Rd | 2 - man/plot.lm.spike.fit.Rd |only tests/testthat/test-nested-regression.R | 17 ++++++----- 9 files changed, 79 insertions(+), 59 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-01 1.0.8
2020-05-19 1.0.7
2020-05-15 1.0.6
2019-02-28 1.0.5
2018-06-18 1.0.4
2018-05-22 1.0.3
2018-04-03 1.0.2
2017-11-02 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-23 0.1.4
Title: Download and Tidy Data from the Reserve Bank of Australia
Description: Download up-to-date data from the Reserve Bank of Australia
in a tidy data frame. Package includes functions to download current and
historical statistical tables
(<https://www.rba.gov.au/statistics/tables/>) and forecasts
(<https://www.rba.gov.au/publications/smp/forecasts-archive.html>). Data
includes a broad range of Australian macroeconomic and financial time
series.
Author: Matt Cowgill [aut, cre] (<https://orcid.org/0000-0003-0422-3300>)
Maintainer: Matt Cowgill <mattcowgill@gmail.com>
Diff between readrba versions 0.1.0 dated 2020-12-16 and 0.1.1 dated 2021-04-06
DESCRIPTION | 9 - MD5 | 26 ++-- NEWS.md | 4 R/check_rba_connection.R |only R/download_rba.R | 11 - R/rba_forecasts.R | 3 R/scrape_table_list.R | 4 R/sysdata.rda |binary README.md | 181 +++++++++++++++---------------- build/vignette.rds |binary inst/doc/readrba.html | 69 ++++++----- man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |only tests/testthat/test-read_rba.R | 10 - tests/testthat/test-scrape_table_list.R | 6 - 15 files changed, 163 insertions(+), 160 deletions(-)