Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrGraph versions 1.2.2 dated 2021-03-03 and 1.2.3 dated 2021-04-11
DESCRIPTION | 7 MD5 | 44 ++-- NAMESPACE | 2 R/MAplotW.R | 451 ++++++++++++++++++++++++++++++----------- R/VolcanoPlotW.R | 321 +++++++++++++++++++---------- R/addBagPlot.R | 2 R/histW.R | 80 ++++--- R/imageW.R | 31 +- R/legendHist.R | 34 +-- R/plotPCAw.R | 70 +++--- R/vioplotW.R | 92 +++++--- build/vignette.rds |binary inst/doc/wrGraphVignette1.R | 43 ++- inst/doc/wrGraphVignette1.Rmd | 70 +++--- inst/doc/wrGraphVignette1.html | 288 +++++++++++++------------- man/MAplotW.Rd | 75 ++++-- man/VolcanoPlotW.Rd | 38 ++- man/addBagPlot.Rd | 2 man/histW.Rd | 19 + man/imageW.Rd | 9 man/plotPCAw.Rd | 3 man/vioplotW.Rd | 11 - vignettes/wrGraphVignette1.Rmd | 70 +++--- 23 files changed, 1122 insertions(+), 640 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.6.7 dated 2021-03-03 and 1.7.0 dated 2021-04-11
DESCRIPTION | 9 +-- MD5 | 60 ++++++++++++------------- NEWS.md | 6 ++ R/casti.R | 6 +- R/geocode.R | 76 +++++++++++++++++++------------- R/kraje.R | 4 - R/obce_body.R | 4 - R/obce_polygony.R | 4 - R/okresy.R | 4 - R/orp_polygony.R | 6 +- R/republika.R | 4 - R/revgeo.R | 31 ++++++++----- R/sysdata.rda |binary R/volebni_okrsky.R | 4 - build/vignette.rds |binary inst/doc/vignette.R | 4 - inst/doc/vignette.Rmd | 4 - inst/doc/vignette.html | 16 +++--- man/casti.Rd | 4 - man/geocode.Rd | 10 ++-- man/kraje.Rd | 2 man/obce_body.Rd | 2 man/obce_polygony.Rd | 2 man/okresy.Rd | 2 man/orp_polygony.Rd | 4 - man/republika.Rd | 2 man/revgeo.Rd | 2 tests/testthat/test-1-data-structures.R | 33 +++++++++---- tests/testthat/test-2-code.R | 28 +++++++---- tests/testthat/test-3-integrace.R | 9 ++- vignettes/vignette.Rmd | 4 - 31 files changed, 199 insertions(+), 147 deletions(-)
Title: A Report Templating System
Description: Facilitating the creation of reproducible statistical
report templates. Once created, rapport templates can be exported to
various external formats (HTML, LaTeX, PDF, ODT etc.) with pandoc as the
converter backend.
Author: Aleksandar Blagotić <alex@rapporter.net> and Gergely Daróczi
<daroczig@rapporter.net>
Maintainer: Gergely Daróczi <daroczig@rapporter.net>
Diff between rapport versions 1.0 dated 2015-11-18 and 1.1 dated 2021-04-11
rapport-1.0/rapport/data/ius2008.rda |only rapport-1.0/rapport/inst/tests |only rapport-1.1/rapport/DESCRIPTION | 13 - rapport-1.1/rapport/INSTALL | 4 rapport-1.1/rapport/MD5 | 129 ++++------ rapport-1.1/rapport/NAMESPACE | 2 rapport-1.1/rapport/NEWS | 7 rapport-1.1/rapport/R/export.R | 6 rapport-1.1/rapport/R/print.methods.R | 8 rapport-1.1/rapport/R/rapport.R | 4 rapport-1.1/rapport/R/rp_helpers.R | 4 rapport-1.1/rapport/R/template.R | 6 rapport-1.1/rapport/data/ius2008.R |only rapport-1.1/rapport/demo/rapport.R | 4 rapport-1.1/rapport/inst/CITATION | 4 rapport-1.1/rapport/inst/includes/javascripts/custom.js | 2 rapport-1.1/rapport/inst/templates/Example.rapport | 16 - rapport-1.1/rapport/inst/templates/deprecated/Example.rapport | 16 - rapport-1.1/rapport/man/as.character.rapport.inputs.Rd | 3 rapport-1.1/rapport/man/as.character.rapport.meta.Rd | 3 rapport-1.1/rapport/man/as.yaml.bool.Rd | 3 rapport-1.1/rapport/man/check.input.value.Rd | 10 rapport-1.1/rapport/man/check.input.value.class.Rd | 10 rapport-1.1/rapport/man/check.report.chunks.Rd | 3 rapport-1.1/rapport/man/check.tpl.Rd | 11 rapport-1.1/rapport/man/extract.meta.Rd | 16 - rapport-1.1/rapport/man/get.tags.Rd | 9 rapport-1.1/rapport/man/guess.input.Rd | 3 rapport-1.1/rapport/man/guess.input.description.Rd | 3 rapport-1.1/rapport/man/guess.input.label.Rd | 3 rapport-1.1/rapport/man/guess.input.name.Rd | 3 rapport-1.1/rapport/man/guess.l.Rd | 11 rapport-1.1/rapport/man/guess.old.input.length.Rd | 3 rapport-1.1/rapport/man/guess.old.input.type.Rd | 3 rapport-1.1/rapport/man/inputs-deprecated.Rd | 3 rapport-1.1/rapport/man/is.rapport.Rd | 3 rapport-1.1/rapport/man/ius2008.Rd | 3 rapport-1.1/rapport/man/print.rapport.Rd | 3 rapport-1.1/rapport/man/print.rapport.info.Rd | 3 rapport-1.1/rapport/man/print.rapport.inputs.Rd | 3 rapport-1.1/rapport/man/print.rapport.meta.Rd | 3 rapport-1.1/rapport/man/rapport-helpers.Rd | 3 rapport-1.1/rapport/man/rapport-package.Rd | 7 rapport-1.1/rapport/man/rapport.Rd | 19 + rapport-1.1/rapport/man/rapport.body.Rd | 3 rapport-1.1/rapport/man/rapport.check.template.Rd | 3 rapport-1.1/rapport/man/rapport.docx.Rd | 3 rapport-1.1/rapport/man/rapport.example.Rd | 3 rapport-1.1/rapport/man/rapport.export.Rd | 20 + rapport-1.1/rapport/man/rapport.header.Rd | 11 rapport-1.1/rapport/man/rapport.html.Rd | 3 rapport-1.1/rapport/man/rapport.info.Rd | 3 rapport-1.1/rapport/man/rapport.inputs.Rd | 3 rapport-1.1/rapport/man/rapport.ls.Rd | 3 rapport-1.1/rapport/man/rapport.meta.Rd | 3 rapport-1.1/rapport/man/rapport.odt.Rd | 3 rapport-1.1/rapport/man/rapport.path.Rd | 3 rapport-1.1/rapport/man/rapport.path.add.Rd | 3 rapport-1.1/rapport/man/rapport.path.remove.Rd | 3 rapport-1.1/rapport/man/rapport.path.reset.Rd | 3 rapport-1.1/rapport/man/rapport.pdf.Rd | 3 rapport-1.1/rapport/man/rapport.read.Rd | 3 rapport-1.1/rapport/man/rapport.renew.Rd | 3 rapport-1.1/rapport/man/rapport.rerun.Rd | 3 rapport-1.1/rapport/man/rapport.tangle.Rd | 3 65 files changed, 231 insertions(+), 229 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'PDF', 'Microsoft Word' and 'Microsoft PowerPoint'
documents from 'R Markdown'. Functions are provided to let users create tables, modify and format
their content. It also extends package 'officer' that does not contain any feature for customized
tabular reporting.
Author: David Gohel [aut, cre],
Clementine Jager [ctb],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] (rmarkdown for docx output),
Titouan Robert [ctb],
Michael Barrowman [ctb] (inline footnotes),
Atsushi Yasumoto [ctb] (support for bookdown cross reference),
Paul Julian [ctb] (support for gam objects)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.6.4 dated 2021-03-10 and 0.6.5 dated 2021-04-11
DESCRIPTION | 9 +++----- MD5 | 49 ++++++++++++++++++++++++----------------------- NAMESPACE | 1 NEWS.md | 8 +++++++ R/01_fpstruct.R | 22 +++++++++++++++++++-- R/05_content.R | 50 ++++++++++++++++++++++++++++++++++++++++++++++++ R/html_str.R | 7 ++++++ R/latex_chunks.R | 3 ++ R/printers.R | 7 +++++- man/as_b.Rd | 1 man/as_bracket.Rd | 1 man/as_chunk.Rd | 1 man/as_equation.Rd |only man/as_highlight.Rd | 1 man/as_i.Rd | 1 man/as_image.Rd | 1 man/as_sub.Rd | 1 man/as_sup.Rd | 1 man/colorize.Rd | 1 man/flextable_to_rmd.Rd | 6 ++++- man/gg_chunk.Rd | 1 man/hyperlink_text.Rd | 1 man/linerange.Rd | 1 man/lollipop.Rd | 1 man/minibar.Rd | 1 man/plot_chunk.Rd | 1 26 files changed, 144 insertions(+), 33 deletions(-)
Title: Doubly Truncated Data Analysis
Description: Implementation of different algorithms for analyzing
randomly truncated data, one-sided and two-sided (i.e. doubly)
truncated data. It also computes the kernel density and hazard functions
using different bandwidth selectors.
Several real data sets are included.
Author: Carla Moreira, Jacobo de Unã-Álvarez and Rosa Crujeiras
Maintainer: Carla Moreira <carlamgmm@gmail.com>
Diff between DTDA versions 2.1-2 dated 2020-02-19 and 3.0 dated 2021-04-11
DESCRIPTION | 15 MD5 | 42 NAMESPACE | 10 R/densityDT.R |only R/efron.petrosian.R | 931 ++++++---- R/hazardDT.R |only R/lynden.R | 739 +++++--- R/rsim.DT.R |only R/shen.R | 4413 ++++++++++++++++++++++++++++--------------------- data/ACS.rda |only data/ACSred.rda |only data/AIDS.DT.rda |only data/ChildCancer.rda |only data/EqSRounded.rda |only data/PDearly.rda |only data/PDlate.rda |only man/ACS.Rd |only man/ACSred.Rd |only man/AIDS.DT.Rd |only man/AIDS.Rd | 6 man/ChildCancer.Rd |only man/DTDA-package.Rd | 45 man/EqSRounded.Rd |only man/PDearly.Rd |only man/PDlate.Rd |only man/Quasars.Rd | 27 man/densityDT.Rd |only man/efron.petrosian.Rd | 13 man/hazardDT.Rd |only man/lynden.Rd | 8 man/rsim.DT.Rd |only man/shen.Rd | 11 32 files changed, 3773 insertions(+), 2487 deletions(-)
Title: R Interface to the US Census Bureau International Data Base API
Description: Use R to make requests to the US Census Bureau's International Data Base API.
Results are returned as R data frames. For more information about the IDB API, visit
<https://www.census.gov/data/developers/data-sets/international-database.html>.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between idbr versions 0.3 dated 2018-04-15 and 1.0 dated 2021-04-11
idbr-0.3/idbr/R/idb.R |only idbr-0.3/idbr/R/idbr_package.R |only idbr-1.0/idbr/DESCRIPTION | 16 +-- idbr-1.0/idbr/LICENSE | 2 idbr-1.0/idbr/MD5 | 37 ++++--- idbr-1.0/idbr/NAMESPACE | 26 +++-- idbr-1.0/idbr/R/IDBr_package.R |only idbr-1.0/idbr/R/get_idb.R |only idbr-1.0/idbr/R/helpers.R | 66 ++++++------- idbr-1.0/idbr/R/idb-deprecated.R |only idbr-1.0/idbr/R/reference.R | 42 ++++---- idbr-1.0/idbr/R/variables5.R | 38 +++---- idbr-1.0/idbr/R/zzz.R | 49 +++++---- idbr-1.0/idbr/README.md | 185 ++++++++++++++++++------------------- idbr-1.0/idbr/man/get_idb.Rd |only idbr-1.0/idbr/man/idb1.Rd | 131 +++++++++++++------------- idbr-1.0/idbr/man/idb5.Rd | 116 ++++++++++++----------- idbr-1.0/idbr/man/idb_api_key.Rd | 44 ++++---- idbr-1.0/idbr/man/idb_concepts.Rd | 22 ++-- idbr-1.0/idbr/man/idb_variables.Rd | 22 ++-- idbr-1.0/idbr/man/idbr.Rd | 41 ++++---- idbr-1.0/idbr/man/variables5.Rd | 53 +++++----- idbr-1.0/idbr/tools |only 23 files changed, 458 insertions(+), 432 deletions(-)
Title: Search and Retrieve Spatial Data from 'GUGiK'
Description: Automatic open data acquisition from resources of Polish Head Office
of Geodesy and Cartography ('Główny Urząd Geodezji i Kartografii')
(<www.gugik.gov.pl>).
Available datasets include various types of numeric, raster and vector data,
such as orthophotomaps, digital elevation models (digital terrain models,
digital surface model, point clouds), state register of borders, spatial
databases, geometries of cadastral parcels, 3D models of buildings, and more.
It is also possible to geocode addresses or objects using the geocodePL_get()
function.
Author: Krzysztof Dyba [aut, cre] (<https://orcid.org/0000-0002-8614-3816>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
Maciej Beręsewicz [ctb] (<https://orcid.org/0000-0002-8281-4301>),
GUGiK [ctb] (source of the data)
Maintainer: Krzysztof Dyba <adres7@gmail.com>
Diff between rgugik versions 0.2.1 dated 2020-12-15 and 0.3.0 dated 2021-04-11
rgugik-0.2.1/rgugik/R/orto_request.R |only rgugik-0.2.1/rgugik/man/orto_request.Rd |only rgugik-0.2.1/rgugik/tests/testthat/test-orto_request.R |only rgugik-0.3.0/rgugik/DESCRIPTION | 6 rgugik-0.3.0/rgugik/MD5 | 104 - rgugik-0.3.0/rgugik/NAMESPACE | 1 rgugik-0.3.0/rgugik/R/DEM_request.R | 20 rgugik-0.3.0/rgugik/R/borders_download.R | 3 rgugik-0.3.0/rgugik/R/borders_get.R | 2 rgugik-0.3.0/rgugik/R/county_names.R | 4 rgugik-0.3.0/rgugik/R/emuia_download.R | 5 rgugik-0.3.0/rgugik/R/geocodePL_get.R | 3 rgugik-0.3.0/rgugik/R/geodb_download.R | 5 rgugik-0.3.0/rgugik/R/geonames_download.R | 3 rgugik-0.3.0/rgugik/R/minmaxDTM_get.R | 2 rgugik-0.3.0/rgugik/R/models3D_download.R | 3 rgugik-0.3.0/rgugik/R/ortho_request.R |only rgugik-0.3.0/rgugik/R/parcel_get.R | 2 rgugik-0.3.0/rgugik/R/pointDTM100_download.R | 5 rgugik-0.3.0/rgugik/R/pointDTM_get.R | 2 rgugik-0.3.0/rgugik/R/tile_download.R | 19 rgugik-0.3.0/rgugik/R/topodb_download.R | 3 rgugik-0.3.0/rgugik/R/utils.R | 6 rgugik-0.3.0/rgugik/README.md | 382 +++--- rgugik-0.3.0/rgugik/build/vignette.rds |binary rgugik-0.3.0/rgugik/inst/CITATION |only rgugik-0.3.0/rgugik/inst/doc/DEM.Rmd | 62 - rgugik-0.3.0/rgugik/inst/doc/DEM.html | 370 +----- rgugik-0.3.0/rgugik/inst/doc/orthophotomap.Rmd | 13 rgugik-0.3.0/rgugik/inst/doc/orthophotomap.html | 302 ----- rgugik-0.3.0/rgugik/inst/doc/topodb.Rmd | 912 ++++++++-------- rgugik-0.3.0/rgugik/inst/doc/topodb.html | 417 +------ rgugik-0.3.0/rgugik/man/DEM_request.Rd | 15 rgugik-0.3.0/rgugik/man/borders_download.Rd | 4 rgugik-0.3.0/rgugik/man/borders_get.Rd | 4 rgugik-0.3.0/rgugik/man/county_names.Rd | 2 rgugik-0.3.0/rgugik/man/emuia_download.Rd | 4 rgugik-0.3.0/rgugik/man/geocodePL_get.Rd | 6 rgugik-0.3.0/rgugik/man/geodb_download.Rd | 4 rgugik-0.3.0/rgugik/man/geonames_download.Rd | 4 rgugik-0.3.0/rgugik/man/minmaxDTM_get.Rd | 4 rgugik-0.3.0/rgugik/man/models3D_download.Rd | 4 rgugik-0.3.0/rgugik/man/ortho_request.Rd |only rgugik-0.3.0/rgugik/man/parcel_get.Rd | 4 rgugik-0.3.0/rgugik/man/pointDTM100_download.Rd | 4 rgugik-0.3.0/rgugik/man/pointDTM_get.Rd | 4 rgugik-0.3.0/rgugik/man/tile_download.Rd | 10 rgugik-0.3.0/rgugik/man/topodb_download.Rd | 4 rgugik-0.3.0/rgugik/tests/testthat/test-ortho_request.R |only rgugik-0.3.0/rgugik/tests/testthat/test-tile_download.R | 12 rgugik-0.3.0/rgugik/tests/testthat/test-utils.R |only rgugik-0.3.0/rgugik/vignettes/DEM.Rmd | 62 - rgugik-0.3.0/rgugik/vignettes/DEM.Rmd.orig | 25 rgugik-0.3.0/rgugik/vignettes/orthophotomap.Rmd | 13 rgugik-0.3.0/rgugik/vignettes/orthophotomap.Rmd.orig | 12 rgugik-0.3.0/rgugik/vignettes/topodb.Rmd | 912 ++++++++-------- rgugik-0.3.0/rgugik/vignettes/topodb.Rmd.orig | 7 57 files changed, 1602 insertions(+), 2174 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
https://tinythreadpp.bitsnbites.eu/),
Hamada S. Badr [ctb] (<https://orcid.org/0000-0002-9808-2344>),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.0.3 dated 2021-02-24 and 5.1.1 dated 2021-04-11
RcppParallel-5.0.3/RcppParallel/R/build.R |only RcppParallel-5.0.3/RcppParallel/inst/include/tbb/machine/xbox360_ppc.h |only RcppParallel-5.0.3/RcppParallel/inst/lib |only RcppParallel-5.0.3/RcppParallel/man/RcppParallelFlags.Rd |only RcppParallel-5.1.1/RcppParallel/DESCRIPTION | 26 RcppParallel-5.1.1/RcppParallel/MD5 | 1220 ++++--- RcppParallel-5.1.1/RcppParallel/NAMESPACE | 8 RcppParallel-5.1.1/RcppParallel/R/RcppParallel-package.R |only RcppParallel-5.1.1/RcppParallel/R/flags.R |only RcppParallel-5.1.1/RcppParallel/R/hooks.R | 23 RcppParallel-5.1.1/RcppParallel/R/options.R | 82 RcppParallel-5.1.1/RcppParallel/R/platform.R |only RcppParallel-5.1.1/RcppParallel/R/skeleton.R | 51 RcppParallel-5.1.1/RcppParallel/cleanup | 2 RcppParallel-5.1.1/RcppParallel/cleanup.win | 2 RcppParallel-5.1.1/RcppParallel/configure | 2 RcppParallel-5.1.1/RcppParallel/configure.win | 2 RcppParallel-5.1.1/RcppParallel/inst/NEWS | 23 RcppParallel-5.1.1/RcppParallel/inst/include/RcppParallel.h | 18 RcppParallel-5.1.1/RcppParallel/inst/include/RcppParallel/Common.h | 31 RcppParallel-5.1.1/RcppParallel/inst/include/RcppParallel/RMatrix.h | 2 RcppParallel-5.1.1/RcppParallel/inst/include/RcppParallel/TBB.h | 202 + RcppParallel-5.1.1/RcppParallel/inst/include/RcppParallel/TinyThread.h | 27 RcppParallel-5.1.1/RcppParallel/inst/include/index.html | 2 RcppParallel-5.1.1/RcppParallel/inst/include/serial/tbb/parallel_for.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/serial/tbb/tbb_annotate.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/aggregator.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/aligned_space.h | 10 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/atomic.h | 12 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/blocked_range.h | 29 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/blocked_range2d.h | 28 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/blocked_range3d.h | 37 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/blocked_rangeNd.h |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb/cache_aligned_allocator.h | 92 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/combinable.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/compat/condition_variable | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/compat/ppl.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/compat/thread | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/compat/tuple | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_hash_map.h | 371 +- RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_lru_cache.h | 78 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_map.h |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_priority_queue.h | 76 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_queue.h | 29 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_set.h |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_unordered_map.h | 243 + RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_unordered_set.h | 234 + RcppParallel-5.1.1/RcppParallel/inst/include/tbb/concurrent_vector.h | 95 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/critical_section.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/enumerable_thread_specific.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/flow_graph.h | 1717 ++++------ RcppParallel-5.1.1/RcppParallel/inst/include/tbb/flow_graph_abstractions.h | 14 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/flow_graph_opencl_node.h | 703 +--- RcppParallel-5.1.1/RcppParallel/inst/include/tbb/global_control.h | 18 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/index.html | 2 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_aggregator_impl.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_allocator_traits.h |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_concurrent_queue_impl.h | 33 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_concurrent_skip_list_impl.h |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_concurrent_unordered_impl.h | 257 + RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_async_msg_impl.h | 120 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_body_impl.h | 155 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_cache_impl.h | 66 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_impl.h | 1152 ++---- RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_indexer_impl.h | 76 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_item_buffer_impl.h | 8 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_join_impl.h | 137 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_node_impl.h | 390 +- RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_streaming_node.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_tagged_buffer_impl.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_trace_impl.h | 117 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_flow_graph_types_impl.h | 22 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_mutex_padding.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_node_handle_impl.h |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_range_iterator.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_tbb_hash_compare_impl.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_tbb_strings.h | 19 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_tbb_trace_impl.h | 13 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_tbb_windef.h | 8 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_template_helpers.h | 119 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_x86_eliding_mutex_impl.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/internal/_x86_rtm_rw_mutex_impl.h | 16 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/iterators.h |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/gcc_arm.h |only RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/gcc_generic.h | 95 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/gcc_ia32_common.h | 9 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/gcc_itsx.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/ibm_aix51.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/icc_generic.h | 8 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/linux_common.h | 37 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/linux_ia32.h | 12 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/linux_ia64.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/linux_intel64.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/mac_ppc.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/macos_common.h | 19 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/mic_common.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/msvc_armv7.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/msvc_ia32_common.h | 11 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/sunos_sparc.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/windows_api.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/windows_ia32.h | 16 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/machine/windows_intel64.h | 10 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/memory_pool.h | 18 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/mutex.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/null_mutex.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/null_rw_mutex.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/parallel_do.h | 8 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/parallel_for.h | 26 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/parallel_for_each.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/parallel_invoke.h | 31 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/parallel_reduce.h | 166 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/parallel_scan.h | 74 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/parallel_sort.h | 25 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/parallel_while.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/partitioner.h | 173 - RcppParallel-5.1.1/RcppParallel/inst/include/tbb/pipeline.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/queuing_mutex.h | 20 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/queuing_rw_mutex.h | 21 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/reader_writer_lock.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/recursive_mutex.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/runtime_loader.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/scalable_allocator.h | 77 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/spin_mutex.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/spin_rw_mutex.h | 19 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/task.h | 97 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/task_arena.h | 172 - RcppParallel-5.1.1/RcppParallel/inst/include/tbb/task_group.h | 60 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/task_scheduler_init.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/task_scheduler_observer.h | 24 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb.h | 18 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb_allocator.h | 25 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb_config.h | 288 - RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb_disable_exceptions.h | 10 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb_exception.h | 83 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb_machine.h | 26 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb_profiling.h | 100 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb_stddef.h | 52 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbb_thread.h | 18 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tbbmalloc_proxy.h | 9 RcppParallel-5.1.1/RcppParallel/inst/include/tbb/tick_count.h | 6 RcppParallel-5.1.1/RcppParallel/inst/include/tthread/tinythread.h | 4 RcppParallel-5.1.1/RcppParallel/man/RcppParallel-package.Rd | 34 RcppParallel-5.1.1/RcppParallel/man/RcppParallel.package.skeleton.Rd | 96 RcppParallel-5.1.1/RcppParallel/man/flags.Rd |only RcppParallel-5.1.1/RcppParallel/man/setThreadOptions.Rd | 61 RcppParallel-5.1.1/RcppParallel/src/Makevars.in | 64 RcppParallel-5.1.1/RcppParallel/src/init.cpp | 2 RcppParallel-5.1.1/RcppParallel/src/options.cpp | 37 RcppParallel-5.1.1/RcppParallel/src/tbb/CHANGES | 369 ++ RcppParallel-5.1.1/RcppParallel/src/tbb/Doxyfile |only RcppParallel-5.1.1/RcppParallel/src/tbb/LICENSE |only RcppParallel-5.1.1/RcppParallel/src/tbb/Makefile | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/README.md |only RcppParallel-5.1.1/RcppParallel/src/tbb/build/AIX.gcc.inc | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/AIX.inc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/build/BSD.clang.inc |only RcppParallel-5.1.1/RcppParallel/src/tbb/build/BSD.inc |only RcppParallel-5.1.1/RcppParallel/src/tbb/build/FreeBSD.clang.inc | 99 RcppParallel-5.1.1/RcppParallel/src/tbb/build/FreeBSD.gcc.inc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/build/FreeBSD.inc | 63 RcppParallel-5.1.1/RcppParallel/src/tbb/build/Makefile.rml | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/Makefile.tbb | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/Makefile.tbbmalloc | 46 RcppParallel-5.1.1/RcppParallel/src/tbb/build/Makefile.tbbproxy | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/Makefile.test | 9 RcppParallel-5.1.1/RcppParallel/src/tbb/build/OpenBSD.clang.inc 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RcppParallel-5.1.1/RcppParallel/src/tbb/build/common_rules.inc | 9 RcppParallel-5.1.1/RcppParallel/src/tbb/build/detect.js | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/build/generate_tbbvars.bat | 128 RcppParallel-5.1.1/RcppParallel/src/tbb/build/generate_tbbvars.sh | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/index.html | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/ios.clang.inc | 10 RcppParallel-5.1.1/RcppParallel/src/tbb/build/ios.macos.inc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/build/linux.clang.inc | 17 RcppParallel-5.1.1/RcppParallel/src/tbb/build/linux.gcc.inc | 32 RcppParallel-5.1.1/RcppParallel/src/tbb/build/linux.icc.inc | 14 RcppParallel-5.1.1/RcppParallel/src/tbb/build/linux.inc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/build/linux.pathcc.inc | 10 RcppParallel-5.1.1/RcppParallel/src/tbb/build/linux.xl.inc | 10 RcppParallel-5.1.1/RcppParallel/src/tbb/build/macos.clang.inc | 29 RcppParallel-5.1.1/RcppParallel/src/tbb/build/macos.gcc.inc | 35 RcppParallel-5.1.1/RcppParallel/src/tbb/build/macos.icc.inc | 17 RcppParallel-5.1.1/RcppParallel/src/tbb/build/macos.inc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/build/mic.icc.inc | 10 RcppParallel-5.1.1/RcppParallel/src/tbb/build/mic.linux.inc | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/mic.linux.launcher.sh | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/mic.offload.inc | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/test_launcher.bat | 144 RcppParallel-5.1.1/RcppParallel/src/tbb/build/test_launcher.sh | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/version_info_aix.sh | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/version_info_android.sh | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/version_info_linux.sh | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/version_info_macos.sh | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/version_info_sunos.sh | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/version_info_windows.js | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/build/vs2013/index.html | 2 RcppParallel-5.1.1/RcppParallel/src/tbb/build/vs2013/makefile.sln | 160 RcppParallel-5.1.1/RcppParallel/src/tbb/build/vs2013/tbb.vcxproj | 1 RcppParallel-5.1.1/RcppParallel/src/tbb/build/vs2013/tbbmalloc.vcxproj | 1 RcppParallel-5.1.1/RcppParallel/src/tbb/build/windows.cl.inc | 26 RcppParallel-5.1.1/RcppParallel/src/tbb/build/windows.gcc.inc | 10 RcppParallel-5.1.1/RcppParallel/src/tbb/build/windows.icl.inc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/build/windows.inc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/cmake |only RcppParallel-5.1.1/RcppParallel/src/tbb/doc |only RcppParallel-5.1.1/RcppParallel/src/tbb/include/index.html | 2 RcppParallel-5.1.1/RcppParallel/src/tbb/include/serial/tbb/parallel_for.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/serial/tbb/tbb_annotate.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/aggregator.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/aligned_space.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/atomic.h | 12 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/blocked_range.h | 20 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/blocked_range2d.h | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/blocked_range3d.h | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/blocked_rangeNd.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/cache_aligned_allocator.h | 92 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/combinable.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/compat/condition_variable | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/compat/ppl.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/compat/thread | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/compat/tuple | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_hash_map.h | 360 +- RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_lru_cache.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_map.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_priority_queue.h | 76 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_queue.h | 29 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_set.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_unordered_map.h | 243 + RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_unordered_set.h | 234 + RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/concurrent_vector.h | 86 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/critical_section.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/enumerable_thread_specific.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/flow_graph.h | 997 +++-- RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/flow_graph_abstractions.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/flow_graph_opencl_node.h | 53 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/global_control.h | 18 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/index.html | 2 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/internal/_aggregator_impl.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/internal/_allocator_traits.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/internal/_concurrent_queue_impl.h | 22 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/internal/_concurrent_skip_list_impl.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/internal/_concurrent_unordered_impl.h | 245 + RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/internal/_flow_graph_async_msg_impl.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/internal/_flow_graph_body_impl.h | 155 RcppParallel-5.1.1/RcppParallel/src/tbb/include/tbb/internal/_flow_graph_cache_impl.h | 66 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RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/scheduler.h | 115 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/scheduler_common.h | 17 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/scheduler_utility.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/semaphore.cpp | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/semaphore.h | 18 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/spin_mutex.cpp | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/spin_rw_mutex.cpp | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/task.cpp | 10 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/task_group_context.cpp | 12 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/task_stream.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/task_stream_extended.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_assert_impl.h | 17 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_environment.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_main.cpp | 86 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_main.h | 9 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_misc.cpp | 56 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_misc.h | 14 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_misc_ex.cpp | 14 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_resource.rc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_statistics.cpp | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_statistics.h | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_thread.cpp | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tbb_version.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tls.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tools_api/disable_warnings.h | 22 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tools_api/ittnotify.h | 10 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tools_api/ittnotify_config.h | 17 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tools_api/ittnotify_static.c | 13 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tools_api/ittnotify_static.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tools_api/ittnotify_types.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/tools_api/legacy/ittnotify.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/win32-tbb-export.def | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/win32-tbb-export.lst | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/win64-gcc-tbb-export.def | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/win64-gcc-tbb-export.lst | 14 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/win64-tbb-export.def | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/win64-tbb-export.lst | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/winrt-tbb-export.lst | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbb/x86_rtm_rw_mutex.cpp | 19 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/Customize.h | 91 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/MapMemory.h | 116 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/Statistics.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/Synchronize.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/TypeDefinitions.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/backend.cpp | 427 +- RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/backend.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/backref.cpp | 14 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/frontend.cpp | 618 ++- RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/index.html | 2 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/large_objects.cpp | 183 - RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/large_objects.h |only RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/lin32-proxy-export.def | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/lin32-tbbmalloc-export.def | 7 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/lin64-proxy-export.def | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/lin64-tbbmalloc-export.def | 7 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/lin64ipf-proxy-export.def | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/lin64ipf-tbbmalloc-export.def | 10 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/mac32-tbbmalloc-export.def | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/mac64-tbbmalloc-export.def | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/proxy.cpp | 236 - RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/proxy.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/proxy_overload_osx.h | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/shared_utils.h | 74 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/tbb_function_replacement.cpp | 261 + RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/tbb_function_replacement.h | 14 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/tbbmalloc.cpp | 15 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/tbbmalloc.rc | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/tbbmalloc_internal.h | 768 ---- RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/tbbmalloc_internal_api.h | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/win32-gcc-tbbmalloc-export.def | 7 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/win32-tbbmalloc-export.def | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/win64-gcc-tbbmalloc-export.def | 7 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbmalloc/win64-tbbmalloc-export.def | 8 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbproxy/tbbproxy-windows.asm | 6 RcppParallel-5.1.1/RcppParallel/src/tbb/src/tbbproxy/tbbproxy.cpp | 12 RcppParallel-5.1.1/RcppParallel/src/tbb/src/test |only RcppParallel-5.1.1/RcppParallel/tests/doRUnit.R | 8 RcppParallel-5.1.1/RcppParallel/tools/config.R | 17 RcppParallel-5.1.1/RcppParallel/tools/tbb |only 533 files changed, 12456 insertions(+), 9890 deletions(-)
Title: Create Maps and Visualize Data in 2D and 3D
Description: Uses a combination of raytracing and multiple hill shading methods to produce 2D and 3D data visualizations and maps. Includes water detection and layering functions, programmable color palette generation, several built-in textures for hill shading, 2D and 3D plotting options, a built-in path tracer, 'Wavefront' OBJ file export, and the ability to save 3D visualizations to a 3D printable format.
Author: Tyler Morgan-Wall
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayshader versions 0.19.2 dated 2020-08-02 and 0.24.5 dated 2021-04-11
DESCRIPTION | 15 ++-- MD5 | 100 ++++++++++++++++----------- NAMESPACE | 7 + R/add_overlay.R | 11 +++ R/add_padding.R | 47 ++++++++++++- R/ambient_shade.R | 5 - R/calculate_normal.R | 4 + R/data.R | 2 R/fix_manifold_geometry.R |only R/generate_altitude_overlay.R | 3 R/generate_compass_overlay.R |only R/generate_contour_overlay.R | 2 R/generate_label_overlay.R |only R/generate_line_overlay.R | 30 ++++++-- R/generate_point_overlay.R |only R/generate_polygon_overlay.R | 48 ++++++++----- R/generate_scalebar_overlay.R |only R/generate_waterline_overlay.R |only R/get_ids_with_labels.R | 6 + R/height_shade.R | 26 +++++-- R/lamb_shade.R | 28 +++++-- R/make_base.R | 28 +++---- R/make_base_triangulated.R | 32 +++++++- R/make_lines.R | 2 R/make_water.R | 2 R/make_waterlines.R | 2 R/plot_3d.R | 26 +++---- R/plot_map.R | 37 ++++++++++ R/render_highquality.R | 136 +++++++++++++++++++++++++------------- R/render_points.R | 4 - R/render_polygons.R |only R/render_snapshot.R | 26 ++++++- R/save_3dprint.R | 2 R/save_obj.R | 76 ++++++++++++++++++--- R/save_png.R | 37 ++++++++++ R/texture_shade.R |only man/add_multi_padding.Rd |only man/ambient_shade.Rd | 2 man/fix_manifold_geometry.Rd |only man/generate_compass_overlay.Rd |only man/generate_contour_overlay.Rd | 2 man/generate_label_overlay.Rd |only man/generate_line_overlay.Rd | 9 ++ man/generate_point_overlay.Rd |only man/generate_polygon_overlay.Rd | 9 +- man/generate_scalebar_overlay.Rd |only man/generate_waterline_overlay.Rd |only man/height_shade.Rd | 13 +++ man/lamb_shade.Rd | 28 +++++-- man/monterey_roads_sf.Rd | 2 man/plot_3d.Rd | 2 man/plot_map.Rd | 37 ++++++++++ man/render_highquality.Rd | 8 +- man/render_points.Rd | 2 man/render_polygons.Rd |only man/render_snapshot.Rd | 16 ++++ man/save_obj.Rd | 12 +++ man/save_png.Rd | 36 +++++++++- man/texture_shade.Rd |only man/trim_padding.Rd |only 60 files changed, 707 insertions(+), 215 deletions(-)
Title: 'SQLite' Interface for R
Description: Embeds the 'SQLite' database engine in R and
provides an interface compliant with the 'DBI' package. The source for
the 'SQLite' engine is included.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
SQLite Authors [ctb] (for the included SQLite sources),
Liam Healy [ctb] (for the included SQLite sources),
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RSQLite versions 2.2.5 dated 2021-03-27 and 2.2.6 dated 2021-04-11
DESCRIPTION | 13 MD5 | 1661 +++++++++++++++++++++++- NEWS.md | 9 R/SQLiteConnection.R | 4 R/SQLiteDriver.R | 23 R/connect.R | 47 R/copy.R | 6 R/datasetsDb.R | 3 R/deprecated.R | 18 R/extensions.R | 3 R/query.R | 15 R/regularExpressions.R | 3 R/rstudioConnections.R |only R/table.R | 64 R/transactions.R | 3 build/vignette.rds |binary inst/icons |only inst/rstudio |only man/SQLite.Rd | 4 man/SQLiteDriver-class.Rd | 2 src/Makevars | 2 src/vendor/boost |only src/vendor/sqlite3/sqlite3.c | 253 ++- src/vendor/sqlite3/sqlite3.h | 6 tests/testthat/helper-DBItest.R | 2 tests/testthat/helper-tibble.R | 5 tests/testthat/test-DBItest.R | 2 tests/testthat/test-affinity.R | 4 tests/testthat/test-basic-types.R | 8 tests/testthat/test-data-type.R | 10 tests/testthat/test-dbConnect.R | 16 tests/testthat/test-dbSendQuery.R | 50 tests/testthat/test-dbWriteTable.R | 62 tests/testthat/test-dbWriteTableAutoincrement.R | 24 tests/testthat/test-encoding.R | 32 tests/testthat/test-error.R | 12 tests/testthat/test-extendedTypes.R | 65 tests/testthat/test-field-types.R | 6 tests/testthat/test-json.R | 6 tests/testthat/test-regularExpressions.R | 36 tests/testthat/test-transactions.R | 134 + 41 files changed, 2251 insertions(+), 362 deletions(-)
Title: Fuzzy Linear Programming
Description: Provides methods to solve Fuzzy Linear Programming Problems with
fuzzy constraints (following different approaches proposed by
Verdegay, Zimmermann, Werners and Tanaka), fuzzy costs, and fuzzy
technological matrix.
Author: Carlos A. Rabelo [aut, cre],
Pablo J. Villacorta [ctb]
Maintainer: Carlos A. Rabelo <carabelo@gmail.com>
Diff between FuzzyLP versions 0.1-5 dated 2017-08-17 and 0.1-6 dated 2021-04-11
DESCRIPTION | 12 MD5 | 31 - R/AuxFuz.R | 257 +++++++-------- R/FuzzyLP.R | 28 - R/GenFuz.R | 14 R/ResFuz.R | 735 ++++++++++++++++++++++----------------------- build/vignette.rds |binary inst/CITATION |only inst/doc/FuzzyLP.pdf |binary inst/doc/FuzzyLP.pdf.asis | 1 man/FCLP.Beta.Rd | 26 + man/FCLP.Obj.Rd | 47 ++ man/FOLP_Ordering.Rd | 12 man/FOLP_Repres.Rd | 28 + man/FuzzyLP.Rd | 8 man/GFLP.Rd | 17 - vignettes/FuzzyLP.pdf.asis | 1 17 files changed, 647 insertions(+), 570 deletions(-)
Title: R MPFR - Multiple Precision Floating-Point Reliable
Description: Arithmetic (via S4 classes and methods) for
arbitrary precision floating point numbers, including transcendental
("special") functions. To this end, the package interfaces to
the 'LGPL' licensed 'MPFR' (Multiple Precision Floating-Point Reliable) Library
which itself is based on the 'GMP' (GNU Multiple Precision) Library.
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Richard M. Heiberger [ctb] (formatHex(), *Bin, *Dec),
John C. Nash [ctb] (hjkMpfr(), origin of unirootR()),
Hans W. Borchers [ctb] (optimizeR(*, "GoldenRatio"); origin of
hjkMpfr())
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between Rmpfr versions 0.8-3 dated 2021-03-23 and 0.8-4 dated 2021-04-11
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- R/as.R | 5 ++++- R/special-fun.R | 14 ++++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 20 ++++++++++++++++++++ inst/doc/Maechler_useR_2011-abstr.pdf |binary inst/doc/Rmpfr-pkg.pdf |binary inst/doc/log1mexp-note.pdf |binary man/distr-etc.Rd | 2 +- src/Ops.c | 11 +++++++---- 12 files changed, 56 insertions(+), 28 deletions(-)
Title: Analyze, Process, Identify, and Share, Raman and (FT)IR Spectra
Description: Raman and (FT)IR spectral analysis tool for plastic particles and
other environmental samples. Supported features include reading spectral
data files (.asp, .csv, .jdx, .spc, .spa, .0), Savitzky-Golay smoothing of
spectral intensities with smooth_intens(), correcting background noise with
subtr_bg() in accordance with Zhao et al. (2007)
<doi:10.1366/000370207782597003>, and identifying spectra using an onboard
reference library (Cowger et al. 2020, <doi:10.1177/0003702820929064>).
Analyzed spectra can be shared with the Open Specy community. A Shiny app is
available via run_app() or online at
<https://wincowger.shinyapps.io/OpenSpecy/>.
Author: Win Cowger [cre, aut] (<https://orcid.org/0000-0001-9226-3104>),
Zacharias Steinmetz [aut] (<https://orcid.org/0000-0001-6675-5033>),
Andrew Gray [ctb] (<https://orcid.org/0000-0003-2252-7367>),
Hannah Hapich [ctb] (<https://orcid.org/0000-0003-0000-6632>),
Jennifer Lynch [ctb, dtc] (<https://orcid.org/0000-0003-3572-8782>),
Hannah De Frond [ctb, dtc] (<https://orcid.org/0000-0003-1199-0727>),
Keenan Munno [ctb, dtc] (<https://orcid.org/0000-0003-2916-5944>),
Chelsea Rochman [ctb, dtc] (<https://orcid.org/0000-0002-7624-711X>),
Sebastian Primpke [ctb, dtc] (<https://orcid.org/0000-0001-7633-8524>),
Orestis Herodotou [ctb, dtc]
Maintainer: Win Cowger <wincowger@gmail.com>
Diff between OpenSpecy versions 0.9.0 dated 2021-04-09 and 0.9.1 dated 2021-04-11
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 8 ++++++++ README.md | 4 ++-- build/partial.rdb |binary inst/doc/sop.html | 4 ++-- inst/shiny/ui.R | 16 ++++++++-------- tests/testthat/test-manage_lib.R | 16 +++++++++++++++- tests/testthat/test-read_spec.R | 2 +- tests/testthat/test-share_spec.R | 2 +- 10 files changed, 50 insertions(+), 28 deletions(-)
Title: Gaussian Process Fitting
Description: Fits a Gaussian process model to data. Gaussian processes
are commonly used in computer experiments to fit an interpolating model.
The model is stored as an 'R6' object and can be easily updated with new
data. There are options to run in parallel (not for Windows), and 'Rcpp'
has been used to speed up calculations. Other R packages that perform
similar calculations include 'laGP', 'DiceKriging', 'GPfit', and 'mlegp'.
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between GauPro versions 0.2.3 dated 2021-03-28 and 0.2.4 dated 2021-04-11
DESCRIPTION | 6 +- MD5 | 28 +++++------ NEWS.md | 6 ++ R/RcppExports.R | 4 - R/corr.R | 67 ++++++++++++++------------- inst/doc/CrossValidationErrorCorrection.html | 20 ++++---- inst/doc/GauPro.html | 4 - inst/doc/IntroductionToGPs.html | 4 - inst/doc/derivatives.html | 4 - inst/doc/surface_derivatives.html | 4 - man/corr_gauss_matrix.Rd | 2 man/corr_gauss_matrix_armaC.Rd | 2 man/corr_gauss_matrix_sym_armaC.Rd | 2 src/corr_gauss_matrix.cpp | 40 +++++++++------- tests/testthat/test_1D.R | 10 ++++ 15 files changed, 116 insertions(+), 87 deletions(-)
Title: Two-Steps Benchmarks for Time Series Disaggregation
Description: The twoStepsBenchmark() and threeRuleSmooth() functions allow you to
disaggregate a low-frequency time-serie with time-series of higher frequency,
using the French National Accounts methodology. The aggregated sum of the
resulting time-serie is strictly equal to the low-frequency serie within the
benchmarking window. Typically, the low-frequency serie is an annual one,
unknown for the last year, and the high frequency one is either quarterly or
mensual. See "Methodology of quarterly national accounts", Insee Méthodes
N°126, by Insee (2012, ISBN:978-2-11-068613-8).
Author: Arnaud Feldmann [aut, cre] (<https://orcid.org/0000-0003-0109-7505>),
Franck Arnaud [ctb] (barplot base graphics method for the mts class),
Institut national de la statistique et des études économiques [cph]
(https://www.insee.fr/)
Maintainer: Arnaud Feldmann <arnaud.feldmann@insee.fr>
Diff between disaggR versions 0.2.0.2 dated 2021-04-10 and 0.2.0.3 dated 2021-04-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- tests/testthat/test-methods.R | 3 ++- tests/testthat/test-reView.R | 1 + 4 files changed, 10 insertions(+), 8 deletions(-)
Title: Profiling of Peripheral Blood Mononuclear Cells using CyTOF
Description: This data package contains a subset of the Bodenmiller et al, Nat Biotech 2012 dataset for testing single cell, high dimensional analysis and visualization methods.
Author: Yann Abraham [aut, cre],
Bernd Bodenmiller [aut]
Maintainer: Yann Abraham <yann.abraham@gmail.com>
Diff between bodenmiller versions 0.1 dated 2015-12-18 and 0.1.1 dated 2021-04-11
bodenmiller-0.1.1/bodenmiller/DESCRIPTION | 16 bodenmiller-0.1.1/bodenmiller/MD5 | 34 - bodenmiller-0.1.1/bodenmiller/NAMESPACE | 3 bodenmiller-0.1.1/bodenmiller/NEWS.md |only bodenmiller-0.1.1/bodenmiller/R/reference.R | 12 bodenmiller-0.1.1/bodenmiller/R/untreated.R | 12 bodenmiller-0.1.1/bodenmiller/README.md | 4 bodenmiller-0.1.1/bodenmiller/build/vignette.rds |binary bodenmiller-0.1.1/bodenmiller/inst/doc/bodenmiller.R | 62 +-- bodenmiller-0.1.1/bodenmiller/inst/doc/bodenmiller.Rmd | 52 +- bodenmiller-0.1.1/bodenmiller/inst/doc/bodenmiller.html | 281 ++++++++++------ bodenmiller-0.1.1/bodenmiller/man/refAnnots.Rd | 13 bodenmiller-0.1.1/bodenmiller/man/refFuncMat.Rd | 13 bodenmiller-0.1.1/bodenmiller/man/refPhenoMat.Rd | 13 bodenmiller-0.1.1/bodenmiller/man/untreatedAnnots.Rd | 13 bodenmiller-0.1.1/bodenmiller/man/untreatedFuncMat.Rd | 13 bodenmiller-0.1.1/bodenmiller/man/untreatedPhenoMat.Rd | 13 bodenmiller-0.1.1/bodenmiller/vignettes/bodenmiller.Rmd | 52 +- bodenmiller-0.1/bodenmiller/data/datalist |only 19 files changed, 334 insertions(+), 272 deletions(-)
Title: Bayesian Methods for Image Segmentation using a Potts Model
Description: Various algorithms for segmentation of 2D and 3D images, such
as computed tomography and satellite remote sensing. This package implements
Bayesian image analysis using the hidden Potts model with external field
prior of Moores et al. (2015) <doi:10.1016/j.csda.2014.12.001>.
Latent labels are sampled using chequerboard updating or Swendsen-Wang.
Algorithms for the smoothing parameter include pseudolikelihood, path sampling,
the exchange algorithm, approximate Bayesian computation (ABC-MCMC and ABC-SMC),
and the parametric functional approximate Bayesian (PFAB) algorithm. Refer to
<doi:10.1007/978-3-030-42553-1_6> for an overview and also to <doi:10.1007/s11222-014-9525-6>
and <doi:10.1214/18-BA1130> for further details of specific algorithms.
Author: Matt Moores [aut, cre] (<https://orcid.org/0000-0003-4531-3572>),
Dai Feng [ctb],
Kerrie Mengersen [aut, ths] (<https://orcid.org/0000-0001-8625-9168>)
Maintainer: Matt Moores <mmoores@gmail.com>
Diff between bayesImageS versions 0.6-0 dated 2019-01-04 and 0.6-1 dated 2021-04-11
bayesImageS-0.6-0/bayesImageS/data/datalist |only bayesImageS-0.6-1/bayesImageS/DESCRIPTION | 24 bayesImageS-0.6-1/bayesImageS/MD5 | 77 - bayesImageS-0.6-1/bayesImageS/NAMESPACE | 1 bayesImageS-0.6-1/bayesImageS/NEWS.md | 8 bayesImageS-0.6-1/bayesImageS/R/bayesImageS.R | 8 bayesImageS-0.6-1/bayesImageS/R/mcmcPotts.R | 17 bayesImageS-0.6-1/bayesImageS/R/smcPotts.R | 4 bayesImageS-0.6-1/bayesImageS/README.md | 35 bayesImageS-0.6-1/bayesImageS/build/partial.rdb |only bayesImageS-0.6-1/bayesImageS/build/vignette.rds |binary bayesImageS-0.6-1/bayesImageS/inst/CITATION | 52 - bayesImageS-0.6-1/bayesImageS/inst/doc/Background.html | 219 ---- bayesImageS-0.6-1/bayesImageS/inst/doc/mcmcPotts.R | 24 bayesImageS-0.6-1/bayesImageS/inst/doc/mcmcPotts.html | 403 ++----- bayesImageS-0.6-1/bayesImageS/inst/doc/mcmcPottsNoData.R | 14 bayesImageS-0.6-1/bayesImageS/inst/doc/mcmcPottsNoData.html | 435 ++------ bayesImageS-0.6-1/bayesImageS/inst/doc/swNoData.R | 12 bayesImageS-0.6-1/bayesImageS/inst/doc/swNoData.html | 505 +++------- bayesImageS-0.6-1/bayesImageS/inst/image/README-logo.png |binary bayesImageS-0.6-1/bayesImageS/inst/image/README-unnamed-chunk-5-1.png |binary bayesImageS-0.6-1/bayesImageS/inst/image/README-unnamed-chunk-6-1.png |binary bayesImageS-0.6-1/bayesImageS/inst/image/README-unnamed-chunk-7-1.png |binary bayesImageS-0.6-1/bayesImageS/inst/image/README-unnamed-chunk-8-1.png |binary bayesImageS-0.6-1/bayesImageS/man/bayesImageS.Rd | 9 bayesImageS-0.6-1/bayesImageS/man/gibbsPotts.Rd |only bayesImageS-0.6-1/bayesImageS/man/initSedki.Rd | 5 bayesImageS-0.6-1/bayesImageS/man/mcmcPotts.Rd | 12 bayesImageS-0.6-1/bayesImageS/man/mcmcPottsNoData.Rd | 3 bayesImageS-0.6-1/bayesImageS/man/res.Rd | 4 bayesImageS-0.6-1/bayesImageS/man/res2.Rd | 4 bayesImageS-0.6-1/bayesImageS/man/res3.Rd | 4 bayesImageS-0.6-1/bayesImageS/man/res4.Rd | 4 bayesImageS-0.6-1/bayesImageS/man/res5.Rd | 4 bayesImageS-0.6-1/bayesImageS/man/smcPotts.Rd | 9 bayesImageS-0.6-1/bayesImageS/man/swNoData.Rd | 2 bayesImageS-0.6-1/bayesImageS/man/synth.Rd | 6 bayesImageS-0.6-1/bayesImageS/man/testResample.Rd | 2 bayesImageS-0.6-1/bayesImageS/src/bayesImageS_init.cpp | 1 bayesImageS-0.6-1/bayesImageS/src/mcmcPotts.cpp | 79 + bayesImageS-0.6-1/bayesImageS/src/mcmcPotts.h | 2 41 files changed, 803 insertions(+), 1185 deletions(-)
Title: Robust Preprocessing of Time Series Data
Description: Methods for handling the missing values outliers are introduced in
this package. The recognized missing values and outliers are replaced
using a model-based approach. The model may consist of both autoregressive
components and external regressors. The methods work robust and efficient,
and they are fully tunable. The primary motivation for writing the package
was preprocessing of the energy systems data, e.g. power plant production
time series, but the package could be used with any time series data.
Author: Michał Narajewski [aut, cre] (<https://orcid.org/0000-0002-3115-0162>),
Florian Ziel [aut] (<https://orcid.org/0000-0002-2974-2660>),
Jens Kley-Holsteg [ctb]
Maintainer: Michał Narajewski <michal.narajewski@uni-due.de>
Diff between tsrobprep versions 0.0.0.2 dated 2020-11-05 and 0.1.0 dated 2021-04-11
tsrobprep-0.0.0.2/tsrobprep/R/handle_outliers.R |only tsrobprep-0.0.0.2/tsrobprep/man/handle_outliers.Rd |only tsrobprep-0.1.0/tsrobprep/DESCRIPTION | 10 - tsrobprep-0.1.0/tsrobprep/LICENSE | 2 tsrobprep-0.1.0/tsrobprep/MD5 | 22 +- tsrobprep-0.1.0/tsrobprep/NAMESPACE | 3 tsrobprep-0.1.0/tsrobprep/R/auto_data_cleaning.R | 130 +++++++---------- tsrobprep-0.1.0/tsrobprep/R/detect_outliers.R |only tsrobprep-0.1.0/tsrobprep/R/impute_modelled_data.R | 14 + tsrobprep-0.1.0/tsrobprep/R/model_missing_data.R | 135 +++++++++++++----- tsrobprep-0.1.0/tsrobprep/man/auto_data_cleaning.Rd | 108 +++----------- tsrobprep-0.1.0/tsrobprep/man/detect_outliers.Rd |only tsrobprep-0.1.0/tsrobprep/man/impute_modelled_data.Rd | 8 - tsrobprep-0.1.0/tsrobprep/man/model_missing_data.Rd | 31 ++-- 14 files changed, 242 insertions(+), 221 deletions(-)
Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling. Full model and computation details are described in Clark et al. (2018) <doi:10.1002/ecm.1241>.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 2.3.5 dated 2021-03-29 and 2.3.6 dated 2021-04-11
DESCRIPTION | 8 - MD5 | 14 +- R/gjamHfunctions.R | 279 +++++++++++++++++++++++++++------------------ inst/doc/gjamVignette.R | 192 +++++++++++++++++++++++++++--- inst/doc/gjamVignette.Rmd | 235 ++++++++++++++++++++++++++++++++----- inst/doc/gjamVignette.html | 166 ++++++++++++++++---------- man/gjam-package.Rd | 4 vignettes/gjamVignette.Rmd | 235 ++++++++++++++++++++++++++++++++----- 8 files changed, 858 insertions(+), 275 deletions(-)
Title: Broadly Useful Convenient and Efficient R Functions
Description: Broadly useful convenient and efficient R functions
that bring users concise and elegant R data analyses.
This package includes easy-to-use functions for
(1) basic R programming
(e.g., set working directory to where the current file is,
print strings with rich formats and colors);
(2) multivariate computation
(e.g., compute scale sums/means/... with reverse scoring);
(3) reliability and factor analyses;
(4) descriptive statistics and correlation analyses;
(5) multi-factor analysis of variance (ANOVA),
simple-effect analysis, and post-hoc multiple comparison;
(6) tidy report of regression models (to Console and to Word);
(7) mediation and moderation analyses;
and (8) additional toolbox for statistics and graphics.
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between bruceR versions 0.6.0 dated 2021-03-19 and 0.6.2 dated 2021-04-11
bruceR-0.6.0/bruceR/R/bruceR_theme.R |only bruceR-0.6.0/bruceR/man/p.trans.Rd |only bruceR-0.6.0/bruceR/man/p.trans2.Rd |only bruceR-0.6.0/bruceR/man/sig.trans.Rd |only bruceR-0.6.2/bruceR/DESCRIPTION | 35 - bruceR-0.6.2/bruceR/MD5 | 94 +-- bruceR-0.6.2/bruceR/NAMESPACE | 10 bruceR-0.6.2/bruceR/NEWS.md | 48 + bruceR-0.6.2/bruceR/R/bruceR.R | 127 ++-- bruceR-0.6.2/bruceR/R/bruceR_basic.R | 149 ++++- bruceR-0.6.2/bruceR/R/bruceR_stats_01_basic.R | 172 +++--- bruceR-0.6.2/bruceR/R/bruceR_stats_02_scale.R | 145 +++-- bruceR-0.6.2/bruceR/R/bruceR_stats_03_manova.R | 264 ++++------ bruceR-0.6.2/bruceR/R/bruceR_stats_04_regress.R | 217 +++++++- bruceR-0.6.2/bruceR/R/bruceR_stats_05_advance.R | 46 - bruceR-0.6.2/bruceR/R/bruceR_stats_06_plot.R |only bruceR-0.6.2/bruceR/README.md | 56 +- bruceR-0.6.2/bruceR/build/partial.rdb |binary bruceR-0.6.2/bruceR/inst |only bruceR-0.6.2/bruceR/man/Alpha.Rd | 49 + bruceR-0.6.2/bruceR/man/CFA.Rd | 13 bruceR-0.6.2/bruceR/man/Corr.Rd | 12 bruceR-0.6.2/bruceR/man/Describe.Rd | 4 bruceR-0.6.2/bruceR/man/EFA.Rd | 4 bruceR-0.6.2/bruceR/man/EMMEANS.Rd | 99 ++- bruceR-0.6.2/bruceR/man/GLM_summary.Rd | 18 bruceR-0.6.2/bruceR/man/HLM_ICC_rWG.Rd |only bruceR-0.6.2/bruceR/man/HLM_summary.Rd | 5 bruceR-0.6.2/bruceR/man/LOOKUP.Rd | 8 bruceR-0.6.2/bruceR/man/MANOVA.Rd | 28 - bruceR-0.6.2/bruceR/man/Print.Rd | 8 bruceR-0.6.2/bruceR/man/RECODE.Rd | 2 bruceR-0.6.2/bruceR/man/RESCALE.Rd | 4 bruceR-0.6.2/bruceR/man/Run.Rd |only bruceR-0.6.2/bruceR/man/bruceR-package.Rd | 123 ++-- bruceR-0.6.2/bruceR/man/ccf_plot.Rd | 2 bruceR-0.6.2/bruceR/man/granger_test.Rd | 2 bruceR-0.6.2/bruceR/man/grapes-allin-grapes.Rd | 5 bruceR-0.6.2/bruceR/man/grapes-anyin-grapes.Rd | 5 bruceR-0.6.2/bruceR/man/grapes-grapes-COMPUTE-grapes-grapes.Rd | 61 +- bruceR-0.6.2/bruceR/man/grapes-nonein-grapes.Rd | 5 bruceR-0.6.2/bruceR/man/grapes-notin-grapes.Rd | 6 bruceR-0.6.2/bruceR/man/grapes-partin-grapes.Rd | 5 bruceR-0.6.2/bruceR/man/grapes-pow-grapes.Rd |only bruceR-0.6.2/bruceR/man/med_summary.Rd | 4 bruceR-0.6.2/bruceR/man/model_summary.Rd | 14 bruceR-0.6.2/bruceR/man/pkg_depend.Rd | 2 bruceR-0.6.2/bruceR/man/pkg_install_suggested.Rd | 2 bruceR-0.6.2/bruceR/man/regress.Rd | 17 bruceR-0.6.2/bruceR/man/scaler.Rd | 4 bruceR-0.6.2/bruceR/man/set.wd.Rd | 24 bruceR-0.6.2/bruceR/man/show_colors.Rd |only bruceR-0.6.2/bruceR/man/theme_bruce.Rd | 40 + 53 files changed, 1221 insertions(+), 717 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-31 1.1.0
2014-08-29 0.4
2014-08-26 0.3
2014-06-25 0.2
2013-11-26 0.1
Title: Bivariate Probability Distributions
Description: Convenience functions for plotting/evaluating bivariate (uniform, binomial, Poisson, categorical, normal and bimodal) distributions, trivariate (normal and Dirichlet) distributions, bivariate kernel density estimates and bivariate empirical cumulative distribution functions. Supports their probability mass functions (PMFs), probability density functions (PDFs) and cumulative distribution functions (CDFs), mostly where applicable.
Author: Abby Spurdle
Maintainer: Abby Spurdle <spurdle.a@gmail.com>
Diff between bivariate versions 0.6.0 dated 2020-09-13 and 0.7.0 dated 2021-04-11
bivariate-0.6.0/bivariate/man/21_mockup_function_objects.Rd |only bivariate-0.6.0/bivariate/man/31_new_generics.Rd |only bivariate-0.6.0/bivariate/man/32_supporting_methods.Rd |only bivariate-0.6.0/bivariate/man/41_main_plotting_functions.Rd |only bivariate-0.7.0/bivariate/DESCRIPTION | 13 bivariate-0.7.0/bivariate/MD5 | 62 +-- bivariate-0.7.0/bivariate/NAMESPACE | 72 +-- bivariate-0.7.0/bivariate/R/bv0.r | 134 ++++-- bivariate-0.7.0/bivariate/R/bv1_u.r | 106 +++-- bivariate-0.7.0/bivariate/R/bv2_bnp.r | 88 ++-- bivariate-0.7.0/bivariate/R/bv3_nbm.r | 127 ++++-- bivariate-0.7.0/bivariate/R/bv4_gdke.r | 191 ++++++--- bivariate-0.7.0/bivariate/R/outer.r | 82 ++-- bivariate-0.7.0/bivariate/R/plots.r | 88 ++-- bivariate-0.7.0/bivariate/R/plots2.r | 74 +-- bivariate-0.7.0/bivariate/build/vignette.rds |binary bivariate-0.7.0/bivariate/inst/doc/bivariate.R | 232 ++++-------- bivariate-0.7.0/bivariate/inst/doc/bivariate.Rnw | 134 ++---- bivariate-0.7.0/bivariate/inst/doc/bivariate.pdf |binary bivariate-0.7.0/bivariate/man/11_PD_uniform.Rd | 4 bivariate-0.7.0/bivariate/man/12_PD_binomial.Rd | 4 bivariate-0.7.0/bivariate/man/13_PD_poisson.Rd | 4 bivariate-0.7.0/bivariate/man/14_PD_categorical.Rd | 4 bivariate-0.7.0/bivariate/man/15_PD_normal.Rd | 4 bivariate-0.7.0/bivariate/man/16_PD_bimodal.Rd | 37 + bivariate-0.7.0/bivariate/man/17_PD_dirichlet.Rd | 4 bivariate-0.7.0/bivariate/man/18_PD_kernel_and_empicial.Rd | 21 - bivariate-0.7.0/bivariate/man/21_function_placeholders.Rd |only bivariate-0.7.0/bivariate/man/31_bridging_functions.Rd |only bivariate-0.7.0/bivariate/man/32_new_generics.Rd |only bivariate-0.7.0/bivariate/man/41_print_methods.Rd |only bivariate-0.7.0/bivariate/man/42_plot_methods.Rd |only bivariate-0.7.0/bivariate/man/42_random_numbers.Rd | 8 bivariate-0.7.0/bivariate/man/43_density_matrices.Rd | 47 +- bivariate-0.7.0/bivariate/man/51_color_functions.Rd | 8 bivariate-0.7.0/bivariate/man/90_deprecated.Rd |only bivariate-0.7.0/bivariate/vignettes/bivariate.Rnw | 134 ++---- 37 files changed, 904 insertions(+), 778 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-11 0.2.1.2
2020-10-02 0.2.1.1
2020-09-16 0.2.1.0
2019-12-17 0.2.0.1
2019-10-07 0.2.0.0
2019-05-09 0.1.6.1
2019-02-07 0.1.6
2018-06-18 0.1.5
2018-04-19 0.1.4
2018-01-26 0.1.3
2018-01-09 0.1.2
2017-12-05 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-31 0.1.2
2021-03-27 0.1.1
2021-01-04 0.1.0
2020-11-24 0.0.1
Title: Excel Connector for R
Description: Provides comprehensive functionality to read, write and format Excel data.
Author: Mirai Solutions GmbH [aut],
Martin Studer [cre],
The Apache Software Foundation [ctb, cph] (Apache POI),
Graph Builder [ctb, cph] (Curvesapi Java library)
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>
Diff between XLConnect versions 1.0.2 dated 2021-02-15 and 1.0.3 dated 2021-04-11
XLConnect-1.0.2/XLConnect/inst/java/XLConnect-1.0.2.jar |only XLConnect-1.0.3/XLConnect/DESCRIPTION | 6 ++--- XLConnect-1.0.3/XLConnect/MD5 | 16 +++++++------- XLConnect-1.0.3/XLConnect/NEWS | 5 ++++ XLConnect-1.0.3/XLConnect/R/onLoad.R | 7 ------ XLConnect-1.0.3/XLConnect/R/xlcEnsureDependenciesFor.R | 8 ++++++- XLConnect-1.0.3/XLConnect/inst/doc/XLConnect.pdf |binary XLConnect-1.0.3/XLConnect/inst/doc/XLConnectImpatient.pdf |binary XLConnect-1.0.3/XLConnect/inst/java/XLConnect-1.0.3.jar |only XLConnect-1.0.3/XLConnect/java/README | 1 10 files changed, 24 insertions(+), 19 deletions(-)
Title: Methods for Time Series Analysis
Description: A collection of functions to perform Detrended Fluctuation Analysis (DFA exponent), GUEDES et al. (2019) <doi:10.1016/j.physa.2019.04.132> , Detrended cross-correlation coefficient (RHODCCA), GUEDES & ZEBENDE (2019) <doi:10.1016/j.physa.2019.121286>, DMCA cross-correlation coefficient and Detrended multiple cross-correlation coefficient (DMC), GUEDES & SILVA-FILHO & ZEBENDE (2018) <doi:10.1016/j.physa.2021.125990>, both with sliding windows approach.
Author: Everaldo Freitas Guedes [aut, cre]
(<https://orcid.org/0000-0002-2986-7367>),
Ivan Costa da Cunha Lima [aut]
(<https://orcid.org/0000-0002-4525-2346>),
Gilney Figueira Zebende [aut] (<https://orcid.org/0000-0003-2420-9805>),
Aloísio Machado Silva-Filho [aut]
(<https://orcid.org/0000-0001-8250-1527>)
Maintainer: Everaldo Freitas Guedes <efgestatistico@gmail.com>
Diff between SlidingWindows versions 0.1.9 dated 2021-01-06 and 0.2.0 dated 2021-04-11
SlidingWindows-0.1.9/SlidingWindows/man/descritive_SlidingWindows.Rd |only SlidingWindows-0.1.9/SlidingWindows/man/dfa_SlidingWindows.Rd |only SlidingWindows-0.1.9/SlidingWindows/man/dmc_SlidingWindows.Rd |only SlidingWindows-0.1.9/SlidingWindows/man/dmca_SlidingWindows.Rd |only SlidingWindows-0.1.9/SlidingWindows/man/entropy_SlidingWindows.Rd |only SlidingWindows-0.1.9/SlidingWindows/man/rhodcca_SlidingWindows.Rd |only SlidingWindows-0.2.0/SlidingWindows/DESCRIPTION | 11 - SlidingWindows-0.2.0/SlidingWindows/MD5 | 32 +-- SlidingWindows-0.2.0/SlidingWindows/NAMESPACE | 13 - SlidingWindows-0.2.0/SlidingWindows/R/SlidingWindows.R | 2 SlidingWindows-0.2.0/SlidingWindows/R/descritive_SlidingWindows.R | 6 SlidingWindows-0.2.0/SlidingWindows/R/dfa_SlidingWindows.R | 10 - SlidingWindows-0.2.0/SlidingWindows/R/dmc_SlidingWindows.R | 86 +++++----- SlidingWindows-0.2.0/SlidingWindows/R/dmca_SlidingWindows.R | 34 ++- SlidingWindows-0.2.0/SlidingWindows/R/entropy_SlidingWindows.R | 51 ++--- SlidingWindows-0.2.0/SlidingWindows/R/rhodcca_SlidingWindows.R | 8 SlidingWindows-0.2.0/SlidingWindows/man/SlidingWindows.Rd | 2 SlidingWindows-0.2.0/SlidingWindows/man/descritive.SlidingWindows.Rd |only SlidingWindows-0.2.0/SlidingWindows/man/dfa.SlidingWindows.Rd |only SlidingWindows-0.2.0/SlidingWindows/man/dmc.SlidingWindows.Rd |only SlidingWindows-0.2.0/SlidingWindows/man/dmca.SlidingWindows.Rd |only SlidingWindows-0.2.0/SlidingWindows/man/entropy.SlidingWindows.Rd |only SlidingWindows-0.2.0/SlidingWindows/man/rhodcca.SlidingWindows.Rd |only 23 files changed, 123 insertions(+), 132 deletions(-)
More information about SlidingWindows at CRAN
Permanent link
Title: Number-Theoretic Functions
Description: Provides number-theoretic functions for factorization, prime
numbers, twin primes, primitive roots, modular logarithm and
inverses, extended GCD, Farey series and continuous fractions.
Includes Legendre and Jacobi symbols, some divisor functions,
Euler's Phi function, etc.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between numbers versions 0.7-5 dated 2019-11-26 and 0.8-1 dated 2021-04-11
DESCRIPTION | 12 ++++++------ MD5 | 40 ++++++++++++++++++++++++---------------- NAMESPACE | 8 ++++++-- NEWS | 20 ++++++++++++++++++++ R/bernoulli.R |only R/carmichael.R |only R/egyptian.R | 2 +- R/modular.R | 18 ++++++++++++++++++ R/pascal.R |only R/ratFarey.R | 21 +++++++++++++++++++++ R/stern_brocot.R |only build/partial.rdb |binary man/bernoulli.Rd |only man/carmichael.Rd |only man/egyptian_complete.Rd | 2 +- man/egyptian_methods.Rd | 2 +- man/mersenne.Rd | 2 +- man/mod.Rd | 28 ++++++++++++++++++++++++++-- man/omega.Rd | 10 ++++++---- man/pascal.Rd |only man/pythagorean.Rd | 2 +- man/rabin.Rd | 2 +- man/ratFarey.Rd | 19 +++++++++++++++++-- man/sigma.Rd | 4 ++-- man/stern_brocot.Rd |only 25 files changed, 152 insertions(+), 40 deletions(-)
Title: Partitioning Beta Diversity into Turnover and Nestedness
Components
Description: Functions to compute pair-wise dissimilarities (distance matrices) and multiple-site dissimilarities, separating the turnover and nestedness-resultant components of taxonomic (incidence and abundance based), functional and phylogenetic beta diversity.
Author: Andres Baselga [aut, cre],
David Orme [aut],
Sebastien Villeger [aut],
Julien De Bortoli [aut],
Fabien Leprieur [aut],
Maxime Logez [aut],
Renato Henriques-Silva [ctb]
Maintainer: Andres Baselga <andres.baselga@usc.es>
Diff between betapart versions 1.5.3 dated 2021-03-05 and 1.5.4 dated 2021-04-11
DESCRIPTION | 8 MD5 | 8 NEWS.md | 4 R/functional.betapart.core.pairwise.R | 678 +++++++++++++++++++++++++++------- man/inter_geom_coord.Rd |only man/inter_rcdd_coord.Rd |only 6 files changed, 565 insertions(+), 133 deletions(-)