Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre] (<https://orcid.org/0000-0003-0410-7385>)
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.2.2 dated 2021-01-04 and 2.3.0 dated 2021-04-16
DESCRIPTION | 8 +- LICENSE | 2 MD5 | 37 ++++++------ NAMESPACE | 7 ++ NEWS.md | 13 ++++ R/authorization.R | 30 ++++++++++ R/fbGetAdCreative.R | 2 R/fbGetAdSets.R | 6 +- R/fbGetPages.R | 3 - R/fbParsers.R | 56 +++++++++++++++++-- R/fbSetters.R |only R/zzz.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/rfacebookstat-authorization.Rmd | 13 ++++ inst/doc/rfacebookstat-authorization.html | 84 +++++++---------------------- inst/doc/rfacebookstat-cost-data.html | 76 +++----------------------- inst/doc/rfacebookstat-get-statistics.html | 76 +++----------------------- man/fbGetLogins.Rd |only man/fbSetters.Rd |only vignettes/rfacebookstat-authorization.Rmd | 13 ++++ 21 files changed, 201 insertions(+), 227 deletions(-)
Title: Prepare Figure Region for Base Graphics
Description: A figure region is prepared, creating a plot region with suitable background color, grid lines or shadings, and providing axes and labeling if not suppressed. Subsequently, information carrying graphics elements can be added (points, lines, barplot with add=TRUE and so forth).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between prepplot versions 1.0 dated 2021-04-14 and 1.0-1 dated 2021-04-16
DESCRIPTION | 10 MD5 | 6 inst/NEWS | 3 inst/doc/prepplotOverview.pdf | 524 +++++++++++++++++++++--------------------- 4 files changed, 273 insertions(+), 270 deletions(-)
Title: Mountain Plots, Folded Empirical Cumulative Distribution Plots
Description: Lattice functions for drawing folded empirical cumulative
distribution plots, or mountain plots. A mountain plot is similar
to an empirical CDF plot, except that the curve increases from
0 to 0.5, then decreases from 0.5 to 1 using an inverted scale at
the right side. See Monti (1995) <doi:10.1080/00031305.1995.10476179>.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between mountainplot versions 1.2 dated 2017-07-13 and 1.3 dated 2021-04-16
DESCRIPTION | 20 - MD5 | 25 +- NAMESPACE | 10 NEWS.md |only R/mountainplot.R | 17 + build/vignette.rds |binary inst/doc/mountainplot_examples.R | 3 inst/doc/mountainplot_examples.Rmd | 38 --- inst/doc/mountainplot_examples.html | 362 ++++++++++++++++-------------------- man/figures |only man/mountainplot.Rd | 23 +- tests/testthat/test_mountainplot.R | 16 + vignettes/mountainplot_examples.Rmd | 38 --- 13 files changed, 254 insertions(+), 298 deletions(-)
Title: Maximum Approximate Bernstein/Beta Likelihood Estimation
Description: Fit data from a continuous population with a smooth density on finite interval by an approximate Bernstein polynomial model which is a mixture of certain beta distributions and find maximum approximate Bernstein likelihood estimator of the unknown coefficients. Consequently, maximum likelihood estimates of the unknown density, distribution functions, and more can be obtained. If the support of the density is not the unit interval then transformation can be applied. This is an implementation of the methods proposed by the author of this package published in the Journal of Nonparametric Statistics: Guan (2016) <doi:10.1080/10485252.2016.1163349> and Guan (2017) <doi:10.1080/10485252.2017.1374384>. For data with covariates, under some semiparametric regression models such as Cox proportional hazards model and the accelerated failure time model, the baseline survival function can be estimated smoothly based on general interval censored data.
Author: Zhong Guan [aut, cre]
Maintainer: Zhong Guan <zguan@iusb.edu>
Diff between mable versions 3.0.0 dated 2021-03-02 and 3.0.1 dated 2021-04-16
DESCRIPTION | 12 - MD5 | 42 +++--- NAMESPACE | 1 R/mable-aft-model.r | 48 +++---- R/mable-ph-model.r | 315 +++++++++++++++++++++++++----------------------- R/mable.r | 11 - inst/doc/mable.R | 14 +- inst/doc/mable.Rmd | 15 +- inst/doc/mable.pdf |binary man/mable.aft.Rd | 8 - man/mable.ic.Rd | 2 man/mable.ph.Rd | 6 man/mable.reg.Rd | 3 man/maple.aft.Rd | 11 - man/maple.ph.Rd | 11 - man/plot.mable_reg.Rd | 7 - man/summary.mable.Rd | 3 src/mable.c | 124 ++++++++++++------ src/mable_init.c | 40 ++++++ vignettes/bernstein.bib | 16 +- vignettes/mable.Rmd | 15 +- vignettes/mable.html | 26 ++- 22 files changed, 412 insertions(+), 318 deletions(-)
Title: Download Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil as 'sf' objects
in R. The package includes a wide range of geospatial data available
at various geographic scales and for various years with harmonized
attributes, projection and fixed topology.
Author: Rafael H. M. Pereira [aut, cre]
(<https://orcid.org/0000-0003-2125-7465>),
Caio Nogueira Goncalves [aut],
Paulo Henrique Fernandes de Araujo [ctb],
Guilherme Duarte Carvalho [ctb],
Rodrigo Almeida de Arruda [ctb],
Igor Nascimento [ctb],
Barbara Santiago Pedreira da Costa [ctb],
Welligtton Silva Cavedo [ctb],
Pedro R. Andrade [ctb],
Alan da Silva [ctb],
Carlos Kauê Vieira Braga [ctb],
Carl Schmertmann [ctb],
Alessandro Samuel-Rosa [ctb],
Daniel Ferreira [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 1.6 dated 2021-04-14 and 1.6.1 dated 2021-04-16
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/utils.R | 3 +-- build/partial.rdb |binary tests/testthat/test-download_metadata.R | 2 ++ 5 files changed, 13 insertions(+), 12 deletions(-)
Title: Simplified Statistics for PA 606
Description: Simplifies functions assess normality for bivariate and multivariate statistical techniques, including hst(), box(), and qq(). Plots designed to replicate those that would result from similar calls in 'SPSS'. Also includes simplified formulae, such as mode(), scatter(), and ow.anova().
Author: Burrel Vann Jr [aut, cre]
Maintainer: Burrel Vann Jr <bvannjr@sdsu.edu>
Diff between vannstats versions 1.0.3.27 dated 2021-04-06 and 1.0.4.15 dated 2021-04-16
DESCRIPTION | 12 ++++++------ MD5 | 22 ++++++++++++++-------- NAMESPACE | 10 ++++++++++ R/box.R | 8 ++++---- R/hst.R | 29 ++++++++++++++++------------- R/ow.anova.R |only R/p.corr.R |only R/qq.R | 8 ++++---- R/scatter.R |only man/box.Rd | 8 ++++---- man/hst.Rd | 8 ++++---- man/ow.anova.Rd |only man/p.corr.Rd |only man/qq.Rd | 8 ++++---- man/scatter.Rd |only 15 files changed, 66 insertions(+), 47 deletions(-)
Title: Syntax Highlighting for R Source Code
Description: Provides syntax highlighting for R source code. Currently it
supports LaTeX and HTML output. Source code of other languages is supported
via Andre Simon's highlight package (<http://www.andre-simon.de>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Yixuan Qiu [aut],
Christopher Gandrud [ctb],
Qiang Li [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between highr versions 0.8 dated 2019-03-20 and 0.9 dated 2021-04-16
highr-0.8/highr/NEWS |only highr-0.8/highr/README.md |only highr-0.9/highr/DESCRIPTION | 27 +++--- highr-0.9/highr/MD5 | 25 +++--- highr-0.9/highr/R/highlight.R | 7 - highr-0.9/highr/R/utils.R | 24 ------ highr-0.9/highr/build/vignette.rds |binary highr-0.9/highr/inst/NEWS.Rd |only highr-0.9/highr/inst/doc/highr-custom.R | 6 - highr-0.9/highr/inst/doc/highr-custom.html | 6 - highr-0.9/highr/inst/doc/highr-internals.R | 18 ++-- highr-0.9/highr/inst/doc/highr-internals.html | 104 ++++++++++++-------------- highr-0.9/highr/man/hi_andre.Rd | 2 highr-0.9/highr/man/hilight.Rd | 15 ++- highr-0.9/highr/tests/testit/test-utils.R | 19 ---- 15 files changed, 105 insertions(+), 148 deletions(-)
Title: Diagnostic Tools and Unit Tests for Statistical Estimators
Description: Extension of 'testthat' package to make unit tests on empirical distributions of estimators and functions for diagnostics of their finite-sample performance.
Author: Dmitry Otryakhin [aut, cre] (<https://orcid.org/0000-0002-4700-7221>)
Maintainer: Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>
Diff between EstimDiagnostics versions 0.0.2 dated 2021-03-07 and 0.0.3 dated 2021-04-16
DESCRIPTION | 7 ++---- MD5 | 8 +++---- NEWS.md | 4 +++ build/vignette.rds |binary inst/doc/Testing-estimators-with-EstimDiagnostics.html | 18 ++++++++--------- 5 files changed, 20 insertions(+), 17 deletions(-)
More information about EstimDiagnostics at CRAN
Permanent link
Title: Desirability Functions for Ranking, Selecting, and Integrating
Data
Description: Functions for (1) ranking, selecting, and prioritising genes,
proteins, and metabolites from high dimensional biology experiments, (2)
multivariate hit calling in high content screens, and (3) combining data
from diverse sources.
Author: Stanley E. Lazic
Maintainer: Stanley E. Lazic <stan.lazic@cantab.net>
Diff between desiR versions 1.2.1 dated 2016-12-10 and 1.2.2 dated 2021-04-16
desiR-1.2.1/desiR/vignettes/Gene_ranking.html |only desiR-1.2.2/desiR/DESCRIPTION | 13 +++++----- desiR-1.2.2/desiR/MD5 | 31 ++++++++++++-------------- desiR-1.2.2/desiR/build/vignette.rds |binary desiR-1.2.2/desiR/inst/doc/Gene_ranking.R | 18 +++++++-------- desiR-1.2.2/desiR/inst/doc/Gene_ranking.Rmd | 2 - desiR-1.2.2/desiR/inst/doc/Gene_ranking.pdf |binary desiR-1.2.2/desiR/man/d.4pl.Rd | 1 desiR-1.2.2/desiR/man/d.central.Rd | 1 desiR-1.2.2/desiR/man/d.ends.Rd | 1 desiR-1.2.2/desiR/man/d.high.Rd | 1 desiR-1.2.2/desiR/man/d.low.Rd | 1 desiR-1.2.2/desiR/man/d.overall.Rd | 1 desiR-1.2.2/desiR/man/d.rank.Rd | 1 desiR-1.2.2/desiR/man/des.line.Rd | 1 desiR-1.2.2/desiR/man/farmer2005.Rd | 7 +++-- desiR-1.2.2/desiR/vignettes/Gene_ranking.Rmd | 2 - 17 files changed, 37 insertions(+), 44 deletions(-)
Title: Dependency Logo
Description: Plots dependency logos from a set of aligned input sequences.
Author: Jan Grau [aut, cre],
Jens Keilwagen [aut],
Martin Nettling [aut]
Maintainer: Jan Grau <grau@informatik.uni-halle.de>
Diff between DepLogo versions 1.0 dated 2019-03-13 and 1.2 dated 2021-04-16
DepLogo-1.0/DepLogo/vignettes/references.bib |only DepLogo-1.2/DepLogo/DESCRIPTION | 12 +- DepLogo-1.2/DepLogo/MD5 | 67 ++++++------ DepLogo-1.2/DepLogo/R/DepLogoR.R | 117 ++++++++++++---------- DepLogo-1.2/DepLogo/build/vignette.rds |binary DepLogo-1.2/DepLogo/inst/CITATION |only DepLogo-1.2/DepLogo/inst/doc/DepLogo.Rmd | 5 DepLogo-1.2/DepLogo/inst/doc/DepLogo.html | 57 +++++----- DepLogo-1.2/DepLogo/man/DLData.Rd | 16 ++- DepLogo-1.2/DepLogo/man/alphabet.dna.Rd | 4 DepLogo-1.2/DepLogo/man/alphabet.dna.gap.Rd | 4 DepLogo-1.2/DepLogo/man/alphabet.protein.Rd | 4 DepLogo-1.2/DepLogo/man/alphabet.protein.gap.Rd | 4 DepLogo-1.2/DepLogo/man/alphabet.rna.Rd | 4 DepLogo-1.2/DepLogo/man/alphabet.rna.gap.Rd | 4 DepLogo-1.2/DepLogo/man/colorchart.Rd | 2 DepLogo-1.2/DepLogo/man/deprects.Rd | 2 DepLogo-1.2/DepLogo/man/filter.by.conservation.Rd | 2 DepLogo-1.2/DepLogo/man/filter.by.dependencies.Rd | 2 DepLogo-1.2/DepLogo/man/filter.by.gaps.Rd | 4 DepLogo-1.2/DepLogo/man/filterColumns.Rd | 4 DepLogo-1.2/DepLogo/man/getDeps.Rd | 8 - DepLogo-1.2/DepLogo/man/getPWM.Rd | 4 DepLogo-1.2/DepLogo/man/logo.Rd | 2 DepLogo-1.2/DepLogo/man/partition.Rd | 19 ++- DepLogo-1.2/DepLogo/man/plotBlocks.Rd | 12 +- DepLogo-1.2/DepLogo/man/plotDeparcs.Rd | 12 +- DepLogo-1.2/DepLogo/man/plotDeplogo.Rd | 49 ++++++--- DepLogo-1.2/DepLogo/man/plotDepmatrix.Rd | 12 +- DepLogo-1.2/DepLogo/man/replaceColors.Rd | 4 DepLogo-1.2/DepLogo/man/subBoxes.Rd | 2 DepLogo-1.2/DepLogo/man/subLines.Rd | 2 DepLogo-1.2/DepLogo/man/suggestColors.Rd | 2 DepLogo-1.2/DepLogo/tests/testthat/Rplots.pdf |binary DepLogo-1.2/DepLogo/vignettes/DepLogo.Rmd | 5 DepLogo-1.2/DepLogo/vignettes/references.bibtex |only 36 files changed, 269 insertions(+), 178 deletions(-)
Title: Import Data in the JCAMP-DX Format
Description: Import data written in the JCAMP-DX format. This is an instrument-independent format used in the field of spectroscopy. Examples include IR, NMR, and Raman spectroscopy. See the vignette for background and supported formats. The official JCAMP-DX site is <http://www.jcamp-dx.org/>.
Author: Bryan A. Hanson [aut, cre] (<https://orcid.org/0000-0003-3536-8246>)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between readJDX versions 0.5.36 dated 2021-03-15 and 0.5.41 dated 2021-04-16
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ inst/doc/GuideToVignettes.pdf |binary inst/doc/MiniDIFDUP_1.pdf |binary inst/doc/MiniDIFDUP_2.pdf |binary inst/doc/ProgramFlow.pdf |binary inst/doc/readJDX.pdf |binary 8 files changed, 16 insertions(+), 12 deletions(-)
Title: Tools for Quantitative Risk Management
Description: Functions and data sets for reproducing selected results from
the book "Quantitative Risk Management: Concepts, Techniques and Tools".
Furthermore, new developments and auxiliary functions for Quantitative
Risk Management practice.
Author: Marius Hofert [aut, cre],
Kurt Hornik [aut],
Alexander J. McNeil [aut]
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between qrmtools versions 0.0-13 dated 2020-04-19 and 0.0-14 dated 2021-04-16
qrmtools-0.0-13/qrmtools/man/edf_plot.Rd |only qrmtools-0.0-14/qrmtools/DESCRIPTION | 13 qrmtools-0.0-14/qrmtools/MD5 | 26 qrmtools-0.0-14/qrmtools/NAMESPACE | 8 qrmtools-0.0-14/qrmtools/R/Brownian.R |only qrmtools-0.0-14/qrmtools/R/fit_GPD.R | 2 qrmtools-0.0-14/qrmtools/R/graphics.R | 133 qrmtools-0.0-14/qrmtools/build/vignette.rds |binary qrmtools-0.0-14/qrmtools/inst/NEWS.Rd | 8 qrmtools-0.0-14/qrmtools/inst/doc/ARMA_GARCH_VaR.html | 401 +- qrmtools-0.0-14/qrmtools/inst/doc/VaR_bounds.html | 1421 +++++----- qrmtools-0.0-14/qrmtools/inst/doc/geometric_risk_measures.html | 331 +- qrmtools-0.0-14/qrmtools/man/Brownian.Rd |only qrmtools-0.0-14/qrmtools/man/VaR_ES_bounds_analytical.Rd | 2 qrmtools-0.0-14/qrmtools/man/VaR_ES_bounds_rearrange.Rd | 6 qrmtools-0.0-14/qrmtools/man/stepfun_plot.Rd |only 16 files changed, 1294 insertions(+), 1057 deletions(-)
Title: Entropy Partitioning to Measure Diversity
Description: Measurement and partitioning of diversity, based on Tsallis entropy, following Marcon and Herault (2015) <doi:10.18637/jss.v067.i08>.
'entropart' provides functions to calculate alpha, beta and gamma diversity of communities, including phylogenetic and functional diversity.
Estimation-bias corrections are available.
Author: Eric Marcon [aut, cre] (<https://orcid.org/0000-0002-5249-321X>),
Bruno Herault [aut] (<https://orcid.org/0000-0002-6950-7286>)
Maintainer: Eric Marcon <eric.marcon@agroparistech.fr>
Diff between entropart versions 1.6-6 dated 2020-11-03 and 1.6-7 dated 2021-04-16
DESCRIPTION | 10 MD5 | 98 ++++---- NEWS.md | 18 + R/AbdFreqCount.R | 8 R/Accumulation.R | 17 - R/AllenH.R | 2 R/CEnvelope.R | 16 - R/ChaoPD.R | 2 R/CommunityProfile.R | 44 ++- R/DivEst.R | 34 ++ R/DivPart.R | 8 R/DivProfile.R | 21 + R/EntropyCI.R | 2 R/Hqz.R | 10 R/MCdiversity.R | 7 R/MCentropy.R | 5 R/MergeC.R | 2 R/MergeMC.R | 2 R/MetaCommunity.R | 17 + R/PhyloApply.R | 10 R/PhyloDiversity.R | 2 R/PhyloEntropy.R | 2 R/PhyloValue.R | 10 R/Preprocess.MC.R | 2 R/Richness.R | 12 - R/Shannon.R | 16 - R/ShannonBeta.R | 10 R/ShuffleMC.R | 6 R/SimTest.R | 2 R/SpeciesDistribution.R | 26 +- R/Tsallis.R | 22 - R/expq.R | 6 R/lnq.R | 6 R/mergeandlabel.R | 2 README.md | 8 build/vignette.rds |binary inst/doc/entropart.Rmd | 2 inst/doc/entropart.html | 477 ++++++++++++------------------------------ man/Accumulation.Rd | 19 + man/CommunityProfile.Rd | 34 ++ man/DivEst.Rd | 29 ++ man/DivPart.Rd | 9 man/DivProfile.Rd | 14 + man/MCdiversity.Rd | 9 man/MCentropy.Rd | 9 man/PhyloValue.Rd | 15 + man/Richness.Rd | 6 man/SpeciesDistribution.Rd | 14 + tests/testthat/testCoverage.R | 4 vignettes/entropart.Rmd | 2 50 files changed, 550 insertions(+), 558 deletions(-)
Title: SciViews - Manage GUIs in R
Description: The 'SciViews' 'svGUI' package eases the management of Graphical
User Interfaces (GUI) in R. It is independent from any particular GUI widgets
('Tk', 'Gtk2', native, ...). It centralizes info about GUI elements currently
used, and it dispatches GUI calls to the particular toolkits in use in
function of the context (is R run at the terminal, within a 'Tk' application,
a HTML page?).
Author: Philippe Grosjean [aut, cre] (<https://orcid.org/0000-0002-2694-9471>)
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svGUI versions 1.0.0 dated 2018-04-23 and 1.0.1 dated 2021-04-16
svGUI-1.0.0/svGUI/TODO |only svGUI-1.0.1/svGUI/DESCRIPTION | 33 +- svGUI-1.0.1/svGUI/MD5 | 42 +- svGUI-1.0.1/svGUI/NEWS.md |only svGUI-1.0.1/svGUI/R/gui.R | 4 svGUI-1.0.1/svGUI/R/gui_add.R | 25 + svGUI-1.0.1/svGUI/R/setUI.R | 9 svGUI-1.0.1/svGUI/R/svGUI-internal.R | 10 svGUI-1.0.1/svGUI/R/svGUI-package.R | 65 ++-- svGUI-1.0.1/svGUI/build/vignette.rds |binary svGUI-1.0.1/svGUI/inst/CITATION | 6 svGUI-1.0.1/svGUI/inst/WORDLIST |only svGUI-1.0.1/svGUI/inst/doc/svGUI.R | 10 svGUI-1.0.1/svGUI/inst/doc/svGUI.Rmd | 26 - svGUI-1.0.1/svGUI/inst/doc/svGUI.html | 378 +++++++++++++++++++----- svGUI-1.0.1/svGUI/man/dont_ask.Rd | 4 svGUI-1.0.1/svGUI/man/gui.Rd | 4 svGUI-1.0.1/svGUI/man/gui_add.Rd | 24 - svGUI-1.0.1/svGUI/man/setUI.Rd | 25 - svGUI-1.0.1/svGUI/man/svGUI-package.Rd | 88 +++-- svGUI-1.0.1/svGUI/tests/spelling.R |only svGUI-1.0.1/svGUI/tests/testthat/test-gui.R | 87 +++++ svGUI-1.0.1/svGUI/tests/testthat/test-gui_add.R | 42 ++ svGUI-1.0.1/svGUI/vignettes/svGUI.Rmd | 26 - 24 files changed, 665 insertions(+), 243 deletions(-)
Title: R Interface to 'ONNX'
Description: R Interface to 'ONNX' - Open Neural Network Exchange <https://onnx.ai/>.
'ONNX' provides an open source format for machine learning models.
It defines an extensible computation graph model, as well as definitions
of built-in operators and standard data types.
Author: Yuan Tang [aut, cre] (<https://orcid.org/0000-0001-5243-233X>),
ONNX Authors [aut, cph],
Facebook, Inc. [cph],
Microsoft Corporation [cph]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between onnx versions 0.0.2 dated 2018-04-25 and 0.0.3 dated 2021-04-16
DESCRIPTION | 11 MD5 | 26 - NAMESPACE | 18 - NEWS.md | 5 README.md | 8 build/vignette.rds |binary inst/doc/onnx_model_zoo.R | 10 inst/doc/onnx_model_zoo.Rmd | 2 inst/doc/onnx_model_zoo.html | 327 +++++++----------------- inst/doc/protobufs.R | 16 - inst/doc/protobufs.html | 563 ++++++++++++++++--------------------------- man/maker.Rd | 5 man/onnx.Rd | 1 vignettes/onnx_model_zoo.Rmd | 2 14 files changed, 355 insertions(+), 639 deletions(-)
Title: Weighted Metrics, Scoring Functions and Performance Measures for
Machine Learning
Description: Provides weighted versions of several metrics, scoring
functions and performance measures used in machine learning, including
average unit deviances of the Bernoulli, Tweedie, Poisson, and Gamma
distributions, see Jorgensen B. (1997, ISBN: 978-0412997112). The
package also contains a weighted version of generalized R-squared, see
e.g. Cohen, J. et al. (2002, ISBN: 978-0805822236). Furthermore,
'dplyr' chains are supported.
Author: Michael Mayer [aut, cre, cph],
Christian Lorentzen [ctb, rev]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between MetricsWeighted versions 0.5.1 dated 2020-04-18 and 0.5.2 dated 2021-04-16
DESCRIPTION | 27 - MD5 | 44 +- NAMESPACE | 82 ++--- NEWS.md | 4 R/deviance_gamma.R | 4 R/deviance_normal.R | 4 R/deviance_poisson.R | 4 R/deviance_tweedie.R | 4 R/elementary_score.R | 4 R/prop_within.R | 2 R/r_squared.R | 4 README.md | 4 build/vignette.rds |binary inst/doc/MetricsWeighted.Rmd | 3 inst/doc/MetricsWeighted.html | 644 ++++++++++++++++-------------------------- man/deviance_gamma.Rd | 4 man/deviance_normal.Rd | 4 man/deviance_poisson.Rd | 4 man/deviance_tweedie.Rd | 4 man/elementary_score.Rd | 4 man/prop_within.Rd | 2 man/r_squared.Rd | 4 vignettes/MetricsWeighted.Rmd | 3 23 files changed, 362 insertions(+), 501 deletions(-)
More information about MetricsWeighted at CRAN
Permanent link
Title: Fit the Gambin Model to Species Abundance Distributions
Description: Fits unimodal and multimodal gambin distributions to species-abundance distributions
from ecological data, as in in Matthews et al. (2014) <DOI:10.1111/ecog.00861>.
'gambin' is short for 'gamma-binomial'. The main function is fit_abundances(), which estimates
the 'alpha' parameter(s) of the gambin distribution using maximum likelihood. Functions are
also provided to generate the gambin distribution and for calculating likelihood statistics.
Author: Thomas Matthews [aut, cre],
Michael Krabbe Borregaard [aut],
Karl Ugland [aut],
Colin Gillespie [aut]
Maintainer: Thomas Matthews <txm676@gmail.com>
Diff between gambin versions 2.4.4 dated 2020-06-02 and 2.5.0 dated 2021-04-16
DESCRIPTION | 10 +- MD5 | 32 +++--- NAMESPACE | 2 README.md | 21 +++- build/vignette.rds |binary inst/doc/overview.html | 163 +++++++++++++++++++++-------------- man/categ.Rd | 44 ++++----- man/create_octaves.Rd | 60 ++++++------ man/deconstruct_modes.Rd | 218 +++++++++++++++++++++++------------------------ man/dgambin.Rd | 178 +++++++++++++++++++------------------- man/fit_abundances.Rd | 132 ++++++++++++++-------------- man/fly.Rd | 44 ++++----- man/gambin-package.Rd | 136 ++++++++++++++--------------- man/logLik.gambin.Rd | 82 ++++++++--------- man/moths.Rd | 32 +++--- man/mult_abundances.Rd | 142 +++++++++++++++--------------- man/summary.gambin.Rd | 124 +++++++++++++------------- 17 files changed, 736 insertions(+), 684 deletions(-)
Title: Distance-Based Measures of Spatial Structures
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, following Marcon, Traissac, Puech, and Lang (2015) <doi:10.18637/jss.v067.c03>.
Includes classical functions (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M).
Relies on 'spatstat' for some core calculation.
Author: Eric Marcon [aut, cre] (<https://orcid.org/0000-0002-5249-321X>),
Gabriel Lang [aut] (<https://orcid.org/0000-0002-4325-6044>),
Stephane Traissac [aut] (<https://orcid.org/0000-0001-9255-1616>),
Florence Puech [aut] (<https://orcid.org/0000-0002-5279-6878>)
Maintainer: Eric Marcon <eric.marcon@agroparistech.fr>
Diff between dbmss versions 2.7-4 dated 2021-01-25 and 2.7-5 dated 2021-04-16
DESCRIPTION | 10 - MD5 | 134 ++++++++++---------- NAMESPACE | 10 - NEWS.md | 13 +- R/CheckdbmssArguments.R | 19 ++ R/Dhat.R | 11 + R/GoFtest.R | 8 - R/Kdhat.R | 7 - R/Ktest.r | 14 +- R/Mhat.R | 12 + R/autoplot.R | 201 +++++++++++++++++++++++++++---- R/ghat.R | 11 + R/m_hat.R | 20 +-- R/rPopulationIndependenceM.R | 2 R/rRandomLocation.R | 2 README.md | 3 build/vignette.rds |binary inst/doc/dbmss.R | 19 +- inst/doc/dbmss.Rmd | 19 +- inst/doc/dbmss.html | 258 ++++------------------------------------ man/CheckdbmssArguments.Rd | 5 man/DEnvelope.Rd | 10 - man/Dhat.Rd | 8 - man/Dtable.Rd | 3 man/FillEnvelope.Rd | 6 man/GlobalEnvelope.Rd | 6 man/GoFtest.Rd | 8 - man/KEnvelope.Rd | 10 - man/KdEnvelope.Rd | 8 - man/Kdhat.Rd | 7 - man/Khat.Rd | 8 - man/KinhomEnvelope.Rd | 11 - man/Kinhomhat.Rd | 5 man/KmmEnvelope.Rd | 10 - man/Kmmhat.Rd | 10 - man/Ktest.Rd | 4 man/LEnvelope.Rd | 10 - man/Lhat.Rd | 10 - man/LmmEnvelope.Rd | 10 - man/Lmmhat.Rd | 10 - man/MEnvelope.Rd | 10 - man/Mhat.Rd | 7 - man/Rcpp.Rd | 5 man/as.Dtable.Rd | 3 man/as.wmppp.Rd | 3 man/autoplot.Rd | 64 ++++++++- man/dbmss-package.Rd | 2 man/dbmssEnvelope.Rd | 5 man/envelope.Dtable.Rd | 2 man/gEnvelope.Rd | 10 - man/generic.spatstat.Rd | 4 man/ghat.Rd | 8 - man/is.wmppp.Rd | 4 man/m_Envelope.Rd | 10 - man/m_hat.Rd | 7 - man/paracou16.Rd | 2 man/print.dbmssEnvelope.Rd | 7 - man/rPopulationIndependenceK.Rd | 4 man/rPopulationIndependenceM.Rd | 4 man/rRandomLabeling.Rd | 4 man/rRandomLabelingM.Rd | 4 man/rRandomLocation.Rd | 7 - man/rRandomPositionK.Rd | 6 man/summary.dbmssEnvelope.Rd | 8 - man/wmppp.Rd | 3 man/wmppp.object.Rd | 8 - src/CountNbd.cpp | 77 +++++------ vignettes/dbmss.Rmd | 19 +- 68 files changed, 575 insertions(+), 654 deletions(-)
Title: Data Package 'Frictionless Data'
Description: Work with 'Frictionless Data Packages' (<https://specs.frictionlessdata.io//data-package/>). Allows to load and validate any descriptor for a data package profile, create and modify descriptors and provides expose methods for reading and streaming data in the package. When a descriptor is a 'Tabular Data Package', it uses the 'Table Schema' package (<https://CRAN.R-project.org/package=tableschema.r>) and exposes its functionality, for each resource object in the resources field.
Author: Kleanthis Koupidis [aut, cre],
Lazaros Ioannidis [aut],
Charalampos Bratsas [aut],
Open Knowledge International [cph]
Maintainer: Kleanthis Koupidis <koupidis.okfgr@gmail.com>
Diff between datapackage.r versions 1.3.2 dated 2021-01-14 and 1.3.3 dated 2021-04-16
DESCRIPTION | 9 - MD5 | 26 ++--- NEWS.md | 4 README.md | 10 +- build/vignette.rds |binary inst/doc/creating_data_packages_in_r.html | 53 ++--------- inst/doc/using_data_packages_in_r.Rmd.html | 76 ++++------------ inst/profiles/fiscal-data-package.json | 4 inst/profiles/tabular-data-package.json | 2 inst/profiles/tabular-data-resource.json | 2 tests/testthat/inst/profiles/fiscal-data-package.json | 4 tests/testthat/inst/profiles/tabular-data-package.json | 2 tests/testthat/inst/profiles/tabular-data-resource.json | 2 tests/testthat/test-profile.R | 36 ------- 14 files changed, 67 insertions(+), 163 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Walter Böhm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-58 dated 2020-12-03 and 0.3-59 dated 2021-04-16
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- build/partial.rdb |binary build/vignette.rds |binary data/CKME.rda |binary data/Cassini.rda |binary data/GVME.rda |binary data/GVME_Consensus.rda |binary data/Kinship82.rda |binary data/Kinship82_Consensus.rda |binary data/Phonemes.rda |binary inst/doc/clue.pdf |binary man/cl_bag.Rd | 2 +- man/cl_fuzziness.Rd | 2 +- man/lattice.Rd | 2 +- 15 files changed, 20 insertions(+), 20 deletions(-)
Title: Automatic Generation of Interactive Visualizations for
Statistical Results
Description: Functionalities to automatically generate interactive visualizations for
statistical results supported by 'ggfortify', such as time series, PCA,
clustering and survival analysis, with 'plotly.js' <https://plotly.com/> and
'ggplot2' style. The generated visualizations can also be easily extended
using 'ggplot2' and 'plotly' syntax while staying interactive.
Author: Yuan Tang [aut, cre] (<https://orcid.org/0000-0001-5243-233X>)
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between autoplotly versions 0.1.2 dated 2018-04-21 and 0.1.3 dated 2021-04-16
DESCRIPTION | 13 ++++++------- MD5 | 20 ++++++++++---------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/CITATION | 6 ++++-- inst/doc/intro.R | 2 +- inst/doc/intro.Rmd | 6 +++--- inst/doc/intro.html | 6 +++--- man/autoplotly.Rd | 28 ++++++++++++++++++++-------- man/reexports.Rd | 5 +---- vignettes/intro.Rmd | 6 +++--- 11 files changed, 57 insertions(+), 41 deletions(-)
Title: Explainable Outlier Detection Through Decision Tree Conditioning
Description: Will try to fit decision trees that try to "predict" values for each column based on the values of each other column.
Along the way, each time a split is evaluated, it will take the observations that fall into each branch as a homogeneous
cluster in which it will search for outliers in the 1-d distribution of the column being predicted. Outliers are determined
according to confidence intervals in this 1-d distribution, and need to have a large gap with respect to the next observation
in sorted order to be flagged as outliers. Since outliers are searched for in a decision tree branch, it will know the conditions
that make it a rare observation compared to others that meet the same conditions, and the conditions will always be correlated
with the target variable (as it's being predicted from them). Full procedure is described in Cortes (2020) <arXiv:2001.00636>.
Loosely based on the 'GritBot' <https://www.rulequest.com/gritbot-info.html> software.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between outliertree versions 1.6.0 dated 2021-03-14 and 1.7.1 dated 2021-04-16
DESCRIPTION | 8 ++-- MD5 | 6 +-- src/Rwrapper.cpp | 107 +++++++++++++++++++++++++++++++++++------------------- src/fit_model.cpp | 6 +-- 4 files changed, 81 insertions(+), 46 deletions(-)
Title: Maximum Likelihood Inference on Multi-State Trees
Description: Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani, T. G. Vaughan and T. Stadler (2018) <doi:10.1098/rsif.2018.0512>.
Author: Joelle Barido-Sottani [aut, cre]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani@m4x.org>
Diff between ML.MSBD versions 1.2.0 dated 2019-09-26 and 1.2.1 dated 2021-04-16
DESCRIPTION | 11 - MD5 | 12 - NEWS.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Using_ML.MSBD.R | 18 +- inst/doc/Using_ML.MSBD.html | 271 +++++++++++++++++++++++++++++++++++--------- 7 files changed, 245 insertions(+), 71 deletions(-)
Title: Create a Collection of 'tidymodels' Workflows
Description: A workflow is a combination of a model and preprocessors (e.g, a
formula, recipe, etc.) (Kuhn and Silge (2021) <https://www.tmwr.org/>). In
order to try different combinations of these, an object can be created that
contains many workflows. There are functions to create workflows en masse
as well as training them and visualizing the results.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between workflowsets versions 0.0.1 dated 2021-03-18 and 0.0.2 dated 2021-04-16
DESCRIPTION | 8 +- MD5 | 18 ++-- NEWS.md | 4 + R/checks.R | 35 ++++++++ R/workflow_map.R | 49 ++++++++---- README.md | 76 ++++++++++++------- inst/WORDLIST | 1 inst/doc/evaluating-different-predictor-sets.html | 88 +++++++++++----------- man/workflow_map.Rd | 3 tests/testthat/test-workflow-map.R | 59 ++++++++++++++ 10 files changed, 240 insertions(+), 101 deletions(-)
Title: Analysis of Tidal Datasets
Description: Contains functions for analysis and summary of tidal datasets. Also provides access to tidal data collected by the National Oceanic and Atmospheric Administration's Center for Operational Oceanographic Products and Services and the Permanent Service for Mean Sea Level. For detailed description and application examples, see Hill, T.D. and S.C. Anisfeld (2021) <doi:10.6084/m9.figshare.14161202.v1> and Hill, T.D. and S.C. Anisfeld (2015) <doi:10.1016/j.ecss.2015.06.004>.
Author: Troy Hill [aut, cre] (<https://orcid.org/0000-0003-2980-4099>),
Shimon Anisfeld [ctb]
Maintainer: Troy Hill <Hill.Troy@gmail.com>
Diff between VulnToolkit versions 1.1.1 dated 2021-03-11 and 1.1.2 dated 2021-04-16
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 13 +++++++++++++ R/noaa.r | 3 +-- README.md | 13 +++++++------ inst/CITATION | 17 ++++++++--------- inst/doc/Tidal_data.html | 12 ++++++------ 7 files changed, 46 insertions(+), 34 deletions(-)
Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a unified
interface for model fitting, prediction, performance assessment, and
presentation of results. Approaches for model fitting and prediction of
numerical, categorical, or censored time-to-event outcomes include
traditional regression models, regularization methods, tree-based methods,
support vector machines, neural networks, ensembles, data preprocessing,
filtering, and model tuning and selection. Performance metrics are provided
for model assessment and can be estimated with independent test sets, split
sampling, cross-validation, or bootstrap resampling. Resample estimation
can be executed in parallel for faster processing and nested in cases of
model tuning and selection. Modeling results can be summarized with
descriptive statistics; calibration curves; variable importance; partial
dependence plots; confusion matrices; and ROC, lift, and other performance
curves.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 2.7.0 dated 2021-03-02 and 2.8.0 dated 2021-04-16
MachineShop-2.7.0/MachineShop/man/dot-.Rd |only MachineShop-2.7.0/MachineShop/man/get_grid-methods.Rd |only MachineShop-2.8.0/MachineShop/DESCRIPTION | 8 MachineShop-2.8.0/MachineShop/MD5 | 149 +++--- MachineShop-2.8.0/MachineShop/NAMESPACE | 19 MachineShop-2.8.0/MachineShop/NEWS.md | 9 MachineShop-2.8.0/MachineShop/R/MLControl.R | 6 MachineShop-2.8.0/MachineShop/R/MLModel.R | 29 - MachineShop-2.8.0/MachineShop/R/ML_BARTMachineModel.R | 9 MachineShop-2.8.0/MachineShop/R/ML_C50Model.R | 9 MachineShop-2.8.0/MachineShop/R/ML_EarthModel.R | 4 MachineShop-2.8.0/MachineShop/R/ML_FDAModel.R | 7 MachineShop-2.8.0/MachineShop/R/ML_GLMModel.R | 10 MachineShop-2.8.0/MachineShop/R/ML_GLMNetModel.R | 19 MachineShop-2.8.0/MachineShop/R/ML_LARSModel.R | 10 MachineShop-2.8.0/MachineShop/R/ML_LDAModel.R | 8 MachineShop-2.8.0/MachineShop/R/ML_MDAModel.R | 11 MachineShop-2.8.0/MachineShop/R/ML_NNetModel.R | 10 MachineShop-2.8.0/MachineShop/R/ML_QDAModel.R | 13 MachineShop-2.8.0/MachineShop/R/ML_StackedModel.R | 4 MachineShop-2.8.0/MachineShop/R/ML_SuperModel.R | 10 MachineShop-2.8.0/MachineShop/R/ML_TreeModel.R | 8 MachineShop-2.8.0/MachineShop/R/ML_XGBModel.R | 74 +-- MachineShop-2.8.0/MachineShop/R/MachineShop-package.R | 2 MachineShop-2.8.0/MachineShop/R/ModelFrame.R | 19 MachineShop-2.8.0/MachineShop/R/ModelRecipe.R | 5 MachineShop-2.8.0/MachineShop/R/ModeledInput.R | 4 MachineShop-2.8.0/MachineShop/R/TrainedInputs.R | 78 +-- MachineShop-2.8.0/MachineShop/R/TrainedModels.R | 87 +-- MachineShop-2.8.0/MachineShop/R/calibration.R | 5 MachineShop-2.8.0/MachineShop/R/classes.R | 4 MachineShop-2.8.0/MachineShop/R/coerce.R | 41 - MachineShop-2.8.0/MachineShop/R/confusion.R | 5 MachineShop-2.8.0/MachineShop/R/convert.R | 8 MachineShop-2.8.0/MachineShop/R/dependence.R | 10 MachineShop-2.8.0/MachineShop/R/diff.R | 4 MachineShop-2.8.0/MachineShop/R/expand.R | 202 ++++++++ MachineShop-2.8.0/MachineShop/R/fit.R | 4 MachineShop-2.8.0/MachineShop/R/grid.R | 234 --------- MachineShop-2.8.0/MachineShop/R/metrics.R | 5 MachineShop-2.8.0/MachineShop/R/metrics_factor.R | 86 ++- MachineShop-2.8.0/MachineShop/R/modelinfo.R | 4 MachineShop-2.8.0/MachineShop/R/performance.R | 43 - MachineShop-2.8.0/MachineShop/R/performance_curve.R | 12 MachineShop-2.8.0/MachineShop/R/plot.R | 52 +- MachineShop-2.8.0/MachineShop/R/predict.R | 8 MachineShop-2.8.0/MachineShop/R/print.R | 84 ++- MachineShop-2.8.0/MachineShop/R/resample.R | 53 +- MachineShop-2.8.0/MachineShop/R/settings.R | 52 +- MachineShop-2.8.0/MachineShop/R/step_kmeans.R | 14 MachineShop-2.8.0/MachineShop/R/step_kmedoids.R | 17 MachineShop-2.8.0/MachineShop/R/step_lincomp.R | 17 MachineShop-2.8.0/MachineShop/R/step_sbf.R | 13 MachineShop-2.8.0/MachineShop/R/step_spca.R | 11 MachineShop-2.8.0/MachineShop/R/summary.R | 34 - MachineShop-2.8.0/MachineShop/R/survival.R | 11 MachineShop-2.8.0/MachineShop/R/utils.R | 133 +++-- MachineShop-2.8.0/MachineShop/R/varimp.R | 4 MachineShop-2.8.0/MachineShop/README.md | 26 - MachineShop-2.8.0/MachineShop/build/vignette.rds |binary MachineShop-2.8.0/MachineShop/inst/doc/MLModels.html | 5 MachineShop-2.8.0/MachineShop/inst/doc/UsersGuide.R | 24 - MachineShop-2.8.0/MachineShop/inst/doc/UsersGuide.Rmd | 222 ++++----- MachineShop-2.8.0/MachineShop/inst/doc/UsersGuide.html | 235 +++++----- MachineShop-2.8.0/MachineShop/man/FDAModel.Rd | 3 MachineShop-2.8.0/MachineShop/man/Grid.Rd | 9 MachineShop-2.8.0/MachineShop/man/MDAModel.Rd | 3 MachineShop-2.8.0/MachineShop/man/MLModel.Rd | 6 MachineShop-2.8.0/MachineShop/man/MachineShop-package.Rd | 2 MachineShop-2.8.0/MachineShop/man/TunedModel.Rd | 15 MachineShop-2.8.0/MachineShop/man/expand_modelgrid-methods.Rd |only MachineShop-2.8.0/MachineShop/man/print-methods.Rd | 4 MachineShop-2.8.0/MachineShop/man/quote.Rd |only MachineShop-2.8.0/MachineShop/tests/testthat/Rplots.pdf |only MachineShop-2.8.0/MachineShop/tests/testthat/test-grids.R | 2 MachineShop-2.8.0/MachineShop/tests/testthat/test-survival.txt | 78 +-- MachineShop-2.8.0/MachineShop/vignettes/UsersGuide.Rmd | 222 ++++----- MachineShop-2.8.0/MachineShop/vignettes/setup.R | 11 78 files changed, 1399 insertions(+), 1259 deletions(-)
Title: Time Varying GARCH Modelling
Description: Simulation, estimation and inference for univariate and multivariate TV(s)-GARCH(p,q,r)-X models, where s indicates the number and shape of the transition functions, p is the ARCH order, q is the GARCH order, r is the asymmetry order, and 'X' indicates that covariates can be included. In the multivariate case, variances are estimated equation by equation and dynamic conditional correlations are allowed. The TV long-term component of the variance as in the multiplicative TV-GARCH model of Amado and Ter\"{a}svirta (2013) <doi:10.1016/j.jeconom.2013.03.006> introduces non-stationarity whereas the GARCH-X short-term component describes conditional heteroscedasticity. Maximisation by parts leads to consistent and asymptotically normal estimates.
Author: Susana Campos-Martins [aut, cre], Genaro Sucarrat [ctb]
Maintainer: Susana Campos-Martins <susana.martins@nuffield.ox.ac.uk>
Diff between tvgarch versions 1.0 dated 2021-02-05 and 2.0 dated 2021-04-16
DESCRIPTION | 12 +++++------ MD5 | 46 +++++++++++++++++++++++++++++------------- NAMESPACE | 53 ++++++++++++++++++++++++++++++++++++++----------- NEWS | 12 ++++++++++- R/coef.mtvgarch.R |only R/dccObj.R |only R/fitted.mtvgarch.R |only R/logLik.mtvgarch.R |only R/mtvgarch.R |only R/mtvgarchSim.R |only R/nobs.mtvgarch.R |only R/predict.mtvgarch.R |only R/predict.tvgarch.R | 2 - R/print.mtvgarch.R |only R/quantile.mtvgarch.R |only R/residuals.mtvgarch.R |only R/toLatex.mtvgarch.R |only R/tv.R | 16 +++++++++++--- R/tvObj.R | 16 +++++++++++--- R/tvgarch.R | 14 +++--------- R/tvgarchTest.R | 9 ++++---- R/vcov.mtvgarch.R |only R/vcov.tvgarch.R | 4 +-- man/coef.mtvgarch.Rd |only man/coef.tvgarch.Rd | 4 +-- man/dccObj.Rd |only man/garchObj.Rd | 16 +++++++------- man/mtvgarch.Rd |only man/mtvgarchSim.Rd |only man/tvgarch-package.Rd |only man/tvgarch.Rd | 13 ++++++------ man/tvgarchSim.Rd | 10 ++++----- man/tvgarchTest.Rd | 8 +++---- 33 files changed, 153 insertions(+), 82 deletions(-)
Title: 'SciViews' - Miscellaneous Functions
Description: Miscellaneous functions for 'SciViews' or general use: manage a
temporary environment attached to the search path for temporary variables you
do not want to save() or load(), test if 'Aqua', 'Mac', 'Win', ... Show
progress bar, etc.
Author: Philippe Grosjean [aut, cre] (<https://orcid.org/0000-0002-2694-9471>),
Romain Francois [ctb],
Kamil Barton [ctb]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svMisc versions 1.1.0 dated 2018-06-30 and 1.1.4 dated 2021-04-16
svMisc-1.1.0/svMisc/TODO |only svMisc-1.1.4/svMisc/DESCRIPTION | 29 +- svMisc-1.1.4/svMisc/MD5 | 108 ++++---- svMisc-1.1.4/svMisc/NEWS.md |only svMisc-1.1.4/svMisc/R/Install.R | 4 svMisc-1.1.4/svMisc/R/about.R | 3 svMisc-1.1.4/svMisc/R/add_actions.R | 4 svMisc-1.1.4/svMisc/R/batch.R | 18 + svMisc-1.1.4/svMisc/R/capture_all.R | 9 svMisc-1.1.4/svMisc/R/completion.R | 23 + svMisc-1.1.4/svMisc/R/file_edit.R | 18 - svMisc-1.1.4/svMisc/R/is_xxx.R | 1 svMisc-1.1.4/svMisc/R/list_methods.R | 9 svMisc-1.1.4/svMisc/R/obj_browse.R | 3 svMisc-1.1.4/svMisc/R/parse_text.R | 3 svMisc-1.1.4/svMisc/R/rjson.R | 22 - svMisc-1.1.4/svMisc/R/search_web.R | 1 svMisc-1.1.4/svMisc/R/svMisc-package.R | 22 + svMisc-1.1.4/svMisc/R/system_file.R | 2 svMisc-1.1.4/svMisc/R/temp_env.R | 2 svMisc-1.1.4/svMisc/build/vignette.rds |binary svMisc-1.1.4/svMisc/inst/CITATION | 6 svMisc-1.1.4/svMisc/inst/WORDLIST |only svMisc-1.1.4/svMisc/inst/doc/svMisc.R |only svMisc-1.1.4/svMisc/inst/doc/svMisc.Rmd |only svMisc-1.1.4/svMisc/inst/doc/svMisc.html |only svMisc-1.1.4/svMisc/inst/doc/temporary_environment.R | 2 svMisc-1.1.4/svMisc/inst/doc/temporary_environment.Rmd | 9 svMisc-1.1.4/svMisc/inst/doc/temporary_environment.html | 204 +++++++++++++++- svMisc-1.1.4/svMisc/man/Install.Rd | 8 svMisc-1.1.4/svMisc/man/about.Rd | 8 svMisc-1.1.4/svMisc/man/add_actions.Rd | 28 +- svMisc-1.1.4/svMisc/man/batch.Rd | 18 - svMisc-1.1.4/svMisc/man/capture_all.Rd | 21 - svMisc-1.1.4/svMisc/man/compare_r_version.Rd | 4 svMisc-1.1.4/svMisc/man/completion.Rd | 30 +- svMisc-1.1.4/svMisc/man/def.Rd | 4 svMisc-1.1.4/svMisc/man/describe_function.Rd | 26 +- svMisc-1.1.4/svMisc/man/file_edit.Rd | 50 ++- svMisc-1.1.4/svMisc/man/gui_cmd.Rd | 4 svMisc-1.1.4/svMisc/man/is_help.Rd | 3 svMisc-1.1.4/svMisc/man/list_methods.Rd | 29 +- svMisc-1.1.4/svMisc/man/obj_browse.Rd | 93 +++++-- svMisc-1.1.4/svMisc/man/package.Rd | 15 - svMisc-1.1.4/svMisc/man/parse_text.Rd | 7 svMisc-1.1.4/svMisc/man/pkgman_describe.Rd | 24 + svMisc-1.1.4/svMisc/man/progress.Rd | 19 - svMisc-1.1.4/svMisc/man/search_web.Rd | 9 svMisc-1.1.4/svMisc/man/source_clipboard.Rd | 4 svMisc-1.1.4/svMisc/man/subsettable.Rd | 8 svMisc-1.1.4/svMisc/man/svMisc-package.Rd | 37 ++ svMisc-1.1.4/svMisc/man/system_file.Rd | 6 svMisc-1.1.4/svMisc/man/temp_env.Rd | 6 svMisc-1.1.4/svMisc/man/temp_var.Rd | 4 svMisc-1.1.4/svMisc/man/to_rjson.Rd | 9 svMisc-1.1.4/svMisc/tests/spelling.R |only svMisc-1.1.4/svMisc/tests/testthat/test-temp_env.R | 46 --- svMisc-1.1.4/svMisc/vignettes/svMisc.Rmd |only svMisc-1.1.4/svMisc/vignettes/temporary_environment.Rmd | 9 59 files changed, 661 insertions(+), 370 deletions(-)
Title: Regional Spatial Modeling with Continuous Borders
Description: Automatically creates separate regression models for different spatial
regions. The prediction surface is smoothed using a regional border smoothing
method. If regional models are continuous, the resulting prediction surface is
continuous across the spatial dimensions, even at region borders. Methodology
is described in Wagstaff (2021) <https://digitalcommons.usu.edu/etd/8065/>.
Author: Jadon Wagstaff [aut, cre],
Brennan Bean [aut]
Maintainer: Jadon Wagstaff <jadonw@gmail.com>
Diff between remap versions 0.2.0 dated 2021-01-14 and 0.2.1 dated 2021-04-16
DESCRIPTION | 26 +++++++++------ MD5 | 20 ++++++------ NAMESPACE | 1 NEWS.md | 14 ++++++++ R/redist.R | 4 +- R/remap.R | 57 ++++++++++++++++++++++++++++------ R/utils.R | 14 ++++---- build/vignette.rds |binary inst/CITATION |only inst/doc/Introduction_to_remap.html | 59 ++++++++---------------------------- man/remap.Rd | 13 ++++++- man/summary.remap.Rd |only 12 files changed, 120 insertions(+), 88 deletions(-)
Title: Preprocessing Tools to Create Design Matrices
Description: An extensible framework to create and preprocess
design matrices. Recipes consist of one or more data manipulation
and analysis "steps". Statistical parameters for the steps can
be estimated from an initial data set and then applied to
other data sets. The resulting design matrices can then be used
as inputs into statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between recipes versions 0.1.15 dated 2020-11-11 and 0.1.16 dated 2021-04-16
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Title: 'sf'-Based Interface to the 'HERE' REST APIs
Description: Interface to the 'HERE' REST APIs <https://developer.here.com/develop/rest-apis>:
(1) geocode and autosuggest addresses or reverse geocode POIs using the 'Geocoder' API;
(2) route directions, travel distance or time matrices and isolines using the 'Routing', 'Matrix Routing' and 'Isoline Routing' APIs;
(3) request real-time traffic flow and incident information from the 'Traffic' API;
(4) find request public transport connections and nearby stations from the 'Public Transit' API;
(5) request intermodal routes using the 'Intermodal Routing' API;
(6) get weather forecasts, reports on current weather conditions, astronomical
information and alerts at a specific location from the 'Destination Weather' API.
Locations, routes and isolines are returned as 'sf' objects.
Author: Merlin Unterfinger [aut, cre] (<https://orcid.org/0000-0003-2020-2366>),
Daniel Possenriede [ctb] (<https://orcid.org/0000-0002-6738-9845>)
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Diff between hereR versions 0.6.1 dated 2021-02-01 and 0.7.0 dated 2021-04-16
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Title: Create Constraints for Small Test Assembly Problems
Description: Provides simple functions to create constraints for small test assembly problems
(e.g. van der Linden (2005, ISBN: 978-0-387-29054-6)) using sparse matrices. Currently,
'GLPK', 'lpSolve', 'Symphony', and 'Gurobi' are supported as solvers. The 'gurobi' package is not available from
any mainstream repository; see <https://www.gurobi.com/downloads/>.
Author: Benjamin Becker [aut, cre],
Dries Debeer [aut]
Maintainer: Benjamin Becker <b.becker@iqb.hu-berlin.de>
Diff between eatATA versions 0.10.0 dated 2021-02-10 and 0.11.1 dated 2021-04-16
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eatATA-0.11.1/eatATA/NEWS.md | 17 eatATA-0.11.1/eatATA/R/analyzeBlockExclusion.R | 6 eatATA-0.11.1/eatATA/R/appendSolution.R | 2 eatATA-0.11.1/eatATA/R/autoItemValuesMinMax.R | 16 eatATA-0.11.1/eatATA/R/computeTargetValues.R | 14 eatATA-0.11.1/eatATA/R/inspectSolution.R | 2 eatATA-0.11.1/eatATA/R/itemCategoryMinMaxConstraint.R |only eatATA-0.11.1/eatATA/R/itemExclusionConstraint.R | 131 ++---- eatATA-0.11.1/eatATA/R/itemTuples.R |only eatATA-0.11.1/eatATA/R/itemUsageConstraint.R | 27 + eatATA-0.11.1/eatATA/R/itemValuesMinMaxConstraint.R |only eatATA-0.11.1/eatATA/R/items_pools.R |only eatATA-0.11.1/eatATA/R/matrixExlusionTuples.R | 94 ++-- eatATA-0.11.1/eatATA/R/objectives.R |only eatATA-0.11.1/eatATA/R/stemInclusionTuples.R |only eatATA-0.11.1/eatATA/R/useSolver.R | 2 eatATA-0.11.1/eatATA/R/utils.R | 94 ++++ eatATA-0.11.1/eatATA/README.md | 22 - eatATA-0.11.1/eatATA/build/vignette.rds |binary eatATA-0.11.1/eatATA/data/items_diao.rda |only eatATA-0.11.1/eatATA/data/items_lsa.rda |only eatATA-0.11.1/eatATA/data/items_mini.rda |only eatATA-0.11.1/eatATA/data/items_pilot.rda |only eatATA-0.11.1/eatATA/data/items_vera.rda |only eatATA-0.11.1/eatATA/inst/doc/minimal_example.R | 32 - eatATA-0.11.1/eatATA/inst/doc/minimal_example.Rmd | 38 + eatATA-0.11.1/eatATA/inst/doc/minimal_example.html | 200 ++++++---- eatATA-0.11.1/eatATA/inst/doc/overview.Rmd | 33 + eatATA-0.11.1/eatATA/inst/doc/overview.html | 41 +- eatATA-0.11.1/eatATA/inst/doc/use_case_pilot_study.R | 58 +- eatATA-0.11.1/eatATA/inst/doc/use_case_pilot_study.Rmd | 62 +-- eatATA-0.11.1/eatATA/inst/doc/use_case_pilot_study.html | 156 +++---- eatATA-0.11.1/eatATA/inst/extdata/items.xlsx |binary eatATA-0.11.1/eatATA/man/analyzeBlockExclusion.Rd | 6 eatATA-0.11.1/eatATA/man/appendSolution.Rd | 2 eatATA-0.11.1/eatATA/man/autoItemValuesMinMaxConstraint.Rd |only eatATA-0.11.1/eatATA/man/cappedMaximinObjective.Rd |only eatATA-0.11.1/eatATA/man/computeTargetValues.Rd | 14 eatATA-0.11.1/eatATA/man/inspectSolution.Rd | 2 eatATA-0.11.1/eatATA/man/itemCategoryRangeConstraint.Rd |only eatATA-0.11.1/eatATA/man/itemExclusionConstraint.Rd | 50 +- eatATA-0.11.1/eatATA/man/itemTuples.Rd |only eatATA-0.11.1/eatATA/man/itemUsageConstraint.Rd | 14 eatATA-0.11.1/eatATA/man/itemValuesRangeConstraint.Rd |only eatATA-0.11.1/eatATA/man/items_diao.Rd |only eatATA-0.11.1/eatATA/man/items_lsa.Rd |only eatATA-0.11.1/eatATA/man/items_mini.Rd |only eatATA-0.11.1/eatATA/man/items_pilot.Rd |only eatATA-0.11.1/eatATA/man/items_vera.Rd |only eatATA-0.11.1/eatATA/man/maxObjective.Rd |only eatATA-0.11.1/eatATA/man/maximinObjective.Rd |only eatATA-0.11.1/eatATA/man/minObjective.Rd |only eatATA-0.11.1/eatATA/man/minimaxObjective.Rd |only eatATA-0.11.1/eatATA/man/stemInclusionTuples.Rd |only eatATA-0.11.1/eatATA/man/useSolver.Rd | 2 eatATA-0.11.1/eatATA/tests/testthat/test_analyzeBlockExclusion.R | 2 eatATA-0.11.1/eatATA/tests/testthat/test_analyzeComplexBlockExclusion.R | 4 eatATA-0.11.1/eatATA/tests/testthat/test_appendSolution.R | 2 eatATA-0.11.1/eatATA/tests/testthat/test_autoItemValuesMinMax.R | 22 - 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Title: Quantitative Structural Model ('QSM') Treatment for Tree
Architecture
Description: Provides a set of tools to manipulate, visualize and compute metrics from quantitative structural model of trees (i.e the so-called 'QSM') . It can be used in various context of forest ecology (i.e biomass estimation) and tree architecture (i.e architectural metrics), see Martin-Ducup et al. (2020) <doi:10.1111/1365-2435.13678>. The package is based on a new S4 class called 'aRchi'.
Author: Olivier Martin
Maintainer: Olivier Martin <oli.martin@ntymail.com>
Diff between aRchi versions 1.0.3 dated 2021-04-09 and 1.0.5 dated 2021-04-16
DESCRIPTION | 11 +++++------ MD5 | 16 ++++++++-------- NEWS | 11 ++++++++++- R/Make_Node.R | 4 ++-- R/SelectinQSM_3d.R | 7 ++++++- R/Truncate_QSM.R | 1 - R/plot.R | 6 +++--- R/read_QSM.R | 2 +- README.md | 4 +++- 9 files changed, 38 insertions(+), 24 deletions(-)
Title: Tidy Interface to 'data.table'
Description: A tidy interface to 'data.table' that is 'rlang' compatible,
giving users the speed of 'data.table' with the clean syntax of the tidyverse.
Author: Mark Fairbanks [aut, cre],
Abdessabour Moutik [ctb],
Matt Carlson [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.6.0 dated 2021-04-02 and 0.6.1 dated 2021-04-16
tidytable-0.6.0/tidytable/R/lag_lead.R |only tidytable-0.6.1/tidytable/DESCRIPTION | 30 - tidytable-0.6.1/tidytable/MD5 | 166 +++++----- tidytable-0.6.1/tidytable/NAMESPACE | 4 tidytable-0.6.1/tidytable/NEWS.md | 19 + tidytable-0.6.1/tidytable/R/across.R |only tidytable-0.6.1/tidytable/R/as_tidytable.R | 1 tidytable-0.6.1/tidytable/R/case.R | 6 tidytable-0.6.1/tidytable/R/coalesce.R |only tidytable-0.6.1/tidytable/R/count.R | 4 tidytable-0.6.1/tidytable/R/desc.R | 3 tidytable-0.6.1/tidytable/R/distinct.R | 33 + tidytable-0.6.1/tidytable/R/drop_na.R | 4 tidytable-0.6.1/tidytable/R/dt.R | 10 tidytable-0.6.1/tidytable/R/expand.R | 1 tidytable-0.6.1/tidytable/R/extract.R | 1 tidytable-0.6.1/tidytable/R/fill.R | 17 - tidytable-0.6.1/tidytable/R/filter.R | 2 tidytable-0.6.1/tidytable/R/get_dummies.R | 1 tidytable-0.6.1/tidytable/R/group_split.R | 26 + tidytable-0.6.1/tidytable/R/ifelse.R | 6 tidytable-0.6.1/tidytable/R/inv_gc.R | 6 tidytable-0.6.1/tidytable/R/is_tidytable.R | 8 tidytable-0.6.1/tidytable/R/join.R | 85 +---- tidytable-0.6.1/tidytable/R/lag-lead.R |only tidytable-0.6.1/tidytable/R/map.R | 12 tidytable-0.6.1/tidytable/R/map2.R | 10 tidytable-0.6.1/tidytable/R/mutate.R | 44 +- tidytable-0.6.1/tidytable/R/mutate_across.R | 9 tidytable-0.6.1/tidytable/R/mutate_rowwise.R | 4 tidytable-0.6.1/tidytable/R/nest.R | 1 tidytable-0.6.1/tidytable/R/nest_by.R | 14 tidytable-0.6.1/tidytable/R/notin.R | 6 tidytable-0.6.1/tidytable/R/pivot_longer.R | 37 +- tidytable-0.6.1/tidytable/R/pivot_wider.R | 1 tidytable-0.6.1/tidytable/R/pull.R | 11 tidytable-0.6.1/tidytable/R/relocate.R | 28 - tidytable-0.6.1/tidytable/R/rename.R | 5 tidytable-0.6.1/tidytable/R/rename_with.R | 8 tidytable-0.6.1/tidytable/R/replace_na.R | 15 tidytable-0.6.1/tidytable/R/select.R | 4 tidytable-0.6.1/tidytable/R/separate.R | 1 tidytable-0.6.1/tidytable/R/summarize.R | 2 tidytable-0.6.1/tidytable/R/summarize_across.R | 9 tidytable-0.6.1/tidytable/R/tidytable-package.R | 12 tidytable-0.6.1/tidytable/R/tidytable.R | 1 tidytable-0.6.1/tidytable/R/top_n.R | 6 tidytable-0.6.1/tidytable/R/transmute.R | 1 tidytable-0.6.1/tidytable/R/uncount.R | 1 tidytable-0.6.1/tidytable/R/unite.R | 1 tidytable-0.6.1/tidytable/R/unnest.R | 32 - tidytable-0.6.1/tidytable/R/utils-across.R | 22 + tidytable-0.6.1/tidytable/R/utils-general.R | 5 tidytable-0.6.1/tidytable/R/utils-prep_exprs.R | 31 + tidytable-0.6.1/tidytable/README.md | 72 +++- tidytable-0.6.1/tidytable/man/across..Rd |only tidytable-0.6.1/tidytable/man/as_tidytable.Rd | 1 tidytable-0.6.1/tidytable/man/case..Rd | 2 tidytable-0.6.1/tidytable/man/coalesce..Rd |only tidytable-0.6.1/tidytable/man/count..Rd | 3 tidytable-0.6.1/tidytable/man/desc..Rd | 3 tidytable-0.6.1/tidytable/man/distinct..Rd | 3 tidytable-0.6.1/tidytable/man/drop_na..Rd | 3 tidytable-0.6.1/tidytable/man/dt.Rd | 9 tidytable-0.6.1/tidytable/man/fill..Rd | 16 tidytable-0.6.1/tidytable/man/grapes-notin-grapes.Rd | 2 tidytable-0.6.1/tidytable/man/group_split..Rd | 16 tidytable-0.6.1/tidytable/man/ifelse..Rd | 4 tidytable-0.6.1/tidytable/man/is_tidytable.Rd | 8 tidytable-0.6.1/tidytable/man/lags..Rd | 2 tidytable-0.6.1/tidytable/man/nest_by..Rd | 9 tidytable-0.6.1/tidytable/man/pull..Rd | 10 tidytable-0.6.1/tidytable/man/relocate..Rd | 9 tidytable-0.6.1/tidytable/man/rename..Rd | 4 tidytable-0.6.1/tidytable/man/rename_with..Rd | 3 tidytable-0.6.1/tidytable/man/select..Rd | 3 tidytable-0.6.1/tidytable/man/tidytable.Rd | 1 tidytable-0.6.1/tidytable/man/top_n..Rd | 3 tidytable-0.6.1/tidytable/man/unnest..Rd | 12 tidytable-0.6.1/tidytable/tests/testthat/test-across.R |only tidytable-0.6.1/tidytable/tests/testthat/test-case.R | 25 - tidytable-0.6.1/tidytable/tests/testthat/test-case_when.R | 24 - tidytable-0.6.1/tidytable/tests/testthat/test-coalesce.R |only tidytable-0.6.1/tidytable/tests/testthat/test-if_all-if_any.R | 13 tidytable-0.6.1/tidytable/tests/testthat/test-mutate_rowwise.R | 8 tidytable-0.6.1/tidytable/tests/testthat/test-pivot_longer.R | 111 ++++-- tidytable-0.6.1/tidytable/tests/testthat/test-replace_na.R | 7 tidytable-0.6.1/tidytable/tests/testthat/test-summarize_across.R | 6 88 files changed, 644 insertions(+), 514 deletions(-)
Title: Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint. 'parseRPDR' currently supports
txt sources: mrn, con, dem, enc, rdt, lab, med, dia and rad.
All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>
Diff between parseRPDR versions 0.0.1 dated 2021-03-15 and 0.0.2 dated 2021-04-16
DESCRIPTION | 8 +++---- MD5 | 43 +++++++++++++++++++++--------------------- NEWS.md |only R/ZZZ.R | 2 + R/convert_dia.R | 2 - R/convert_enc.R | 2 - R/convert_lab.R | 2 + R/convert_med.R | 2 - R/find_exam.R | 6 +++-- R/find_exam_bm.R | 17 ++++++---------- R/find_exam_ram.R | 11 +++------- R/load_dem.R | 4 +-- R/load_dia.R | 2 - R/load_enc.R | 4 +-- R/load_lab.R | 2 - R/load_med.R | 2 - R/load_rad.R | 2 - R/load_rdt.R | 2 - inst/doc/Using_parseRPDR.R | 2 - inst/doc/Using_parseRPDR.Rmd | 9 +++++--- inst/doc/Using_parseRPDR.html | 10 +++++---- man/find_exam.Rd | 6 +++-- vignettes/Using_parseRPDR.Rmd | 9 +++++--- 23 files changed, 80 insertions(+), 69 deletions(-)
Title: Estimation Methods for Causal Inference Based on Inverse
Probability Weighting
Description: Various estimators of causal effects based on inverse probability weighting, doubly robust estimation, and double machine learning. Specifically, the package includes methods for estimating average treatment effects, direct and indirect effects in causal mediation analysis, and dynamic treatment effects. The models refer to studies of Froelich (2007) <doi:10.1016/j.jeconom.2006.06.004>, Huber (2012) <doi:10.3102/1076998611411917>, Huber (2014) <doi:10.1080/07474938.2013.806197>, Huber (2014) <doi:10.1002/jae.2341>, Froelich and Huber (2017) <doi:10.1111/rssb.12232>, Hsu, Huber, Lee, and Lettry (2020) <doi:10.1002/jae.2765>, and others.
Author: Hugo Bodory [aut, cre] (<https://orcid.org/0000-0002-3645-1204>),
Martin Huber [aut] (<https://orcid.org/0000-0002-8590-9402>)
Maintainer: Hugo Bodory <hugo.bodory@unisg.ch>
Diff between causalweight versions 1.0.0 dated 2020-12-02 and 1.0.1 dated 2021-04-16
DESCRIPTION | 6 - MD5 | 47 +++++++---- NAMESPACE | 2 R/JC.R |only R/RDDcovar.R |only R/coffeeleaflet.R |only R/dyntreatDML.R | 187 ++++++++++++++++++++++++---------------------- R/functions.R | 113 +++++++++++++++++++-------- R/games.R | 4 R/medDML.R | 111 +++++++++++++-------------- R/treatDML.R | 130 +++++++++++++++++-------------- R/treatselDML.R | 161 +++++++++++++++++++++------------------ R/ubduration.R |only data/JC.RData |only data/coffeeleaflet.RData |only data/games.RData |binary data/swissexper.RData |binary data/ubduration.RData |only data/wexpect.RData |binary inst/doc/bodory-huber.pdf |binary man/JC.Rd |only man/RDDcovar.Rd |only man/coffeeleaflet.Rd |only man/didweight.Rd | 114 ++++++++++++++-------------- man/dyntreatDML.Rd | 7 + man/games.Rd | 122 ++++++++++++++---------------- man/medDML.Rd | 5 - man/treatDML.Rd | 5 - man/treatselDML.Rd | 7 + man/ubduration.Rd |only 30 files changed, 565 insertions(+), 456 deletions(-)
Title: Schedule R Scripts and Processes with the Windows Task Scheduler
Description: Schedule R scripts/processes with the Windows task scheduler. This
allows R users to automate R processes on specific time points from R itself.
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Oliver Belmans [cph, aut]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between taskscheduleR versions 1.4 dated 2018-10-24 and 1.5 dated 2021-04-16
DESCRIPTION | 11 -- MD5 | 12 +- build/vignette.rds |binary inst/NEWS | 3 inst/doc/taskscheduleR.R | 8 - inst/doc/taskscheduleR.html | 234 ++++++++++++++++++++++++++++---------------- man/taskscheduler_create.Rd | 29 +++-- 7 files changed, 187 insertions(+), 110 deletions(-)
Title: Simulations and Statistical Inference for Linear Fractional
Stable Motions
Description: Contains functions for simulating linear fractional stable motions, according to techniques developed by Stoev and Taqqu (2004) <doi:10.1142/S0218348X04002379>, as well as functions for computing important statistics used with these processes introduced by Mazur, Otryakhin and Podolskij (2018) <arXiv:1802.06373>, and also different quantities related to those statistics.
Author: Dmitry Otryakhin [aut, cre] (<https://orcid.org/0000-0002-4700-7221>),
Stepan Mazur [aut] (<https://orcid.org/0000-0002-1395-9427>),
Mathias Ljungdahl [ctb]
Maintainer: Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>
Diff between rlfsm versions 1.0.2 dated 2021-03-15 and 1.0.3 dated 2021-04-16
DESCRIPTION | 7 +++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/MinContrastEstim.R | 3 ++- build/partial.rdb |binary man/MinContrastEstim.Rd | 3 ++- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: Automatic Download, Linking, Manipulating Coordinates for Maps
Description: Maps are an important tool to visualise variables distribution across different spatial object. The mapping process require to link the data with coordinates and then generate the correspondent map. This package provide coordinates, linking and mapping functions for an automatic, flexible and easy approach of mapping workflow of different geographical statistical unit.Geographical coordinates are provided in the package and automatically linked with the input data to generate maps with internal provided functions or external functions.provide an easy, flexible and automatic approach to potentially download updated coordinates, to link statistical units with coordinates and to aggregate variables based on the spatial hierarchy of units. The object returned from the package can be used for thematic maps with the build-in functions provided in mapping or with other packages already available.
Author: Alessio Serafini [aut, cre],
Giancarlo Ferrara [aut]
Maintainer: Alessio Serafini <srf.alessio@gmail.com>
Diff between mapping versions 1.0 dated 2021-04-01 and 1.1 dated 2021-04-16
DESCRIPTION | 10 MD5 | 14 NAMESPACE | 85 +- NEWS.md | 2 README.md | 21 inst/doc/a-journey-into-mapping.Rmd | 1022 +++++++++++++++++------------------ inst/doc/a-journey-into-mapping.html | 4 vignettes/a-journey-into-mapping.Rmd | 1022 +++++++++++++++++------------------ 8 files changed, 1080 insertions(+), 1100 deletions(-)
Title: Printing Floating Point Numbers in a Human-Friendly Format
Description: Print vectors (and data frames) of floating point numbers
using a non-scientific format optimized for human readers. Vectors
of numbers are rounded using significant digits, aligned at the
decimal point, and all zeros trailing the decimal point are dropped.
See: Wright (2016). Lucid: An R Package for Pretty-Printing Floating Point
Numbers. In JSM Proceedings, Statistical Computing Section. Alexandria,
VA: American Statistical Association. 2270-2279.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>)
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between lucid versions 1.7 dated 2019-02-06 and 1.8 dated 2021-04-16
lucid-1.7/lucid/data/antibiotic.txt.gz |only lucid-1.8/lucid/DESCRIPTION | 13 lucid-1.8/lucid/MD5 | 31 - lucid-1.8/lucid/NAMESPACE | 2 lucid-1.8/lucid/NEWS.md | 28 - lucid-1.8/lucid/R/lucid.R | 97 ++--- lucid-1.8/lucid/R/vc.R | 70 +++ lucid-1.8/lucid/build/vignette.rds |binary lucid-1.8/lucid/data/antibiotic.txt |only lucid-1.8/lucid/inst/doc/lucid_examples.Rmd | 12 lucid-1.8/lucid/inst/doc/lucid_examples.html | 477 +++++++++------------------ lucid-1.8/lucid/man/antibiotic.Rd | 158 ++++---- lucid-1.8/lucid/man/figures |only lucid-1.8/lucid/man/lucid.Rd | 185 +++++----- lucid-1.8/lucid/man/vc.Rd | 165 ++++----- lucid-1.8/lucid/tests/testthat/test_lucid.R | 4 lucid-1.8/lucid/tests/testthat/test_vc.R | 67 ++- lucid-1.8/lucid/vignettes/lucid_examples.Rmd | 12 18 files changed, 614 insertions(+), 707 deletions(-)
Title: Exact Distributions for Rank and Permutation Tests
Description: Computes exact conditional p-values and quantiles using an
implementation of the Shift-Algorithm by Streitberg & Roehmel.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between exactRankTests versions 0.8-31 dated 2019-12-11 and 0.8-32 dated 2021-04-16
exactRankTests-0.8-31/exactRankTests/tests/exactRankTests-Ex.R |only exactRankTests-0.8-31/exactRankTests/tests/exactRankTests-Ex.Rout.save |only exactRankTests-0.8-31/exactRankTests/tests/exactRankTests-ExOLD.R |only exactRankTests-0.8-31/exactRankTests/tests/exactRankTests-ExOLD.Rout.save |only exactRankTests-0.8-32/exactRankTests/DESCRIPTION | 8 +- exactRankTests-0.8-32/exactRankTests/MD5 | 31 ++++------ exactRankTests-0.8-32/exactRankTests/data/ASAT.rda |binary exactRankTests-0.8-32/exactRankTests/data/bloodp.rda |binary exactRankTests-0.8-32/exactRankTests/data/ears.rda |binary exactRankTests-0.8-32/exactRankTests/data/glioma.rda |binary exactRankTests-0.8-32/exactRankTests/data/globulin.rda |binary exactRankTests-0.8-32/exactRankTests/data/lungcancer.rda |binary exactRankTests-0.8-32/exactRankTests/data/neuropathy.rda |binary exactRankTests-0.8-32/exactRankTests/data/ocarcinoma.rda |binary exactRankTests-0.8-32/exactRankTests/data/rotarod.rda |binary exactRankTests-0.8-32/exactRankTests/data/sal.rda |binary exactRankTests-0.8-32/exactRankTests/inst/NEWS | 4 + exactRankTests-0.8-32/exactRankTests/tests/Examples |only exactRankTests-0.8-32/exactRankTests/tests/reg-tests.Rout.save | 12 +-- 19 files changed, 28 insertions(+), 27 deletions(-)
More information about exactRankTests at CRAN
Permanent link
Title: Diffusion Models R Analysis
Description: The implemented methods are: Bass model, Generalized Bass model (with rectangular shock, exponential shock, mixed shock and harmonic shock, 1 to 3 shocks available), Dynamic market potential model, and UCRCD model. The Bass model consists of a simple differential equation that describes the process of how new products get adopted in a population, the Generalized Bass model is a generalization of the Bass model with a function x(t), capturing the changing speed of diffusion. In some real processes the market potential may be not constant over time and a dynamic market potential model is needed. The Guseo-Guidolin model is a specification of this situation. The UCRCD model (Unbalanced Competition and Regime Change Diachronic) is a diffusion model used to capture the dynamics of competition between two products within the same market.
Author: Zanghi Federico
Maintainer: Zanghi Federico <federico.zanghi.11@gmail.com>
Diff between DIMORA versions 0.1.0 dated 2018-12-03 and 0.2.0 dated 2021-04-16
DESCRIPTION | 17 MD5 | 39 +- NAMESPACE | 21 + R/BASSgeneralized.R | 685 ++++++++++++++++++++++----------------- R/BASSstandard.R | 150 +++++--- R/GGmodel.R | 201 ++++++----- R/SARMAX.refinement.R |only R/UCRCD.R |only R/classic.plot.sarima.R |only R/plot.Dimora.R |only R/predict.Dimora.R |only R/predict_SARMAX.refinement.R |only R/summary.Dimora.R |only README.md | 5 man/BASSGeneralized.Rd | 29 + man/BASSStandard.Rd | 27 - man/BASSStandardgenerator.Rd | 18 - man/BASSplot.Rd | 11 man/DIMORA.Rd |only man/GGmodel.Rd | 74 ++-- man/SARMAX.refinement.Rd |only man/UCRCD.Rd |only man/classic.plot.sarima.Rd |only man/makeinstantanous.Rd | 13 man/plot.Dimora.Rd |only man/predict.Dimora.Rd |only man/predict_SARMAX.refinement.Rd |only man/summary.Dimora.Rd |only 28 files changed, 747 insertions(+), 543 deletions(-)
Title: A Clean, Whitespace-Sensitive Template Language for Writing HTML
Description: Jade is a high performance template engine heavily influenced by
Haml and implemented with JavaScript for node and browsers.
Author: Jeroen Ooms, Forbes Lindesay
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between rjade versions 0.1 dated 2015-02-18 and 0.1.1 dated 2021-04-16
DESCRIPTION | 18 ++--- MD5 | 18 ++--- NAMESPACE | 2 R/jade.R | 6 - build/vignette.rds |binary inst/doc/intro.R | 8 +- inst/doc/intro.Rmd | 2 inst/doc/intro.html | 170 +++++++++++++++++++++++++++++++++++++++------------- man/jade.Rd | 11 +-- vignettes/intro.Rmd | 2 10 files changed, 163 insertions(+), 74 deletions(-)
Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX <https://sdmx.org>) Web Services
(<https://ec.europa.eu/eurostat/web/sdmx-web-services/about-this-service>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Mátyás Mészáros [aut, cre]
Maintainer: Mátyás Mészáros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.10.0 dated 2021-03-10 and 0.10.3 dated 2021-04-16
DESCRIPTION | 9 +++---- MD5 | 54 +++++++++++++++++++++++---------------------- NAMESPACE | 1 NEWS.md | 13 +++++++++- R/clean_restatapi_cache.R | 4 +-- R/create_filter_table.R | 4 +-- R/extract_dsd.R | 2 - R/extract_toc.R | 4 +-- R/get_compressed_sdmx.R | 2 - R/get_eurostat_bulk.R | 6 ++--- R/get_eurostat_cache.R | 6 ++--- R/get_eurostat_data.R | 17 +++++++------- R/get_eurostat_dsd.R | 6 ++--- R/get_eurostat_raw.R | 12 +++++----- R/get_eurostat_toc.R | 6 ++--- R/load_cfg.R | 3 +- R/put_eurostat_cache.R | 8 +++--- R/restatapi_env.R |only R/search_eurostat_dsd.R | 4 +-- R/zzz.R | 9 ++++++- man/create_filter_table.Rd | 4 +-- man/dot-restatapi_env.Rd |only man/extract_dsd.Rd | 2 - man/extract_toc.Rd | 4 +-- man/get_eurostat_bulk.Rd | 6 ++--- man/get_eurostat_data.Rd | 8 +++--- man/get_eurostat_raw.Rd | 6 ++--- man/put_eurostat_cache.Rd | 2 - man/search_eurostat_dsd.Rd | 4 +-- 29 files changed, 113 insertions(+), 93 deletions(-)
Title: 'Rcpp' Interface to the APT Package Manager
Description: The 'APT Package Management System' provides Debian and
Debian-derived Linux systems with a powerful system to resolve package
dependencies. This package offers access directly from R. This can
only work on a system with a suitable 'libapt-pkg-dev' installation
so functionality is curtailed if such a library is not found.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppAPT versions 0.0.6 dated 2020-03-14 and 0.0.7 dated 2021-04-16
ChangeLog | 29 + DESCRIPTION | 13 MD5 | 16 README.md | 39 - build/vignette.rds |binary inst/NEWS.Rd | 2 inst/doc/binnmuAfterR340.Rmd | 87 +-- inst/doc/binnmuAfterR340.html | 1105 ++++++++++++++++++++---------------------- vignettes/binnmuAfterR340.Rmd | 87 +-- 9 files changed, 693 insertions(+), 685 deletions(-)
Title: 'Mica' Data Web Portal Client
Description: 'Mica' is a server application used to create data web portals for
large-scale epidemiological studies or multiple-study consortia. 'Mica' helps
studies to provide scientifically robust data visibility and web presence
without significant information technology effort. 'Mica' provides a
structured description of consortia, studies, annotated and searchable data
dictionaries, and data access request management. This 'Mica' client allows
to perform data extraction for reporting purposes.
Author: Yannick Marcon [aut, cre] (<https://orcid.org/0000-0003-0138-2023>),
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between micar versions 1.1.1 dated 2019-04-10 and 1.1.2 dated 2021-04-16
DESCRIPTION | 10 +++--- MD5 | 54 ++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/mica-dar.R | 14 ++++----- inst/doc/mica-dar.html | 41 +++++++++++++++++++++------- inst/doc/mica-search.R | 16 +++++----- inst/doc/mica-search.html | 41 +++++++++++++++++++++------- man/dot-extractLabel.Rd | 8 ++++- man/dot-extractLabel2.Rd | 8 ++++- man/mica.dar.Rd | 18 ++++++------ man/mica.dar.actions.Rd | 18 ++++++------ man/mica.dar.amendment.Rd | 18 ++++++------ man/mica.dar.amendment.form.Rd | 18 ++++++------ man/mica.dar.amendment.history.Rd | 18 ++++++------ man/mica.dar.amendments.Rd | 18 ++++++------ man/mica.dar.amendments.history.Rd | 18 ++++++------ man/mica.dar.form.Rd | 18 ++++++------ man/mica.dar.history.Rd | 18 ++++++------ man/mica.dars.Rd | 18 ++++++------ man/mica.datasets.Rd | 13 ++++++-- man/mica.login.Rd | 7 +++- man/mica.networks.Rd | 13 ++++++-- man/mica.studies.Rd | 21 +++++++++----- man/mica.study.dces.Rd | 18 ++++++++---- man/mica.study.populations.Rd | 19 ++++++++----- man/mica.taxonomies.Rd | 13 ++++++-- man/mica.variables.Rd | 13 ++++++-- man/mica.vocabularies.Rd | 13 ++++++-- 28 files changed, 318 insertions(+), 184 deletions(-)
Title: The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages
Description: Individual based simulations of hybridizing populations, where the accumulation of junctions is tracked. Furthermore, mathematical equations are provided to verify simulation outcomes. Both simulations and mathematical equations are based on Janzen (2018) <doi:10.1101/058107>.
Author: Thijs Janzen [aut, cre]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between junctions versions 1.1 dated 2018-08-13 and 1.1.1 dated 2021-04-16
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/junctions_vignette.R | 36 ++++++++++++++++++------------------ inst/doc/junctions_vignette.html | 14 +++++++------- 5 files changed, 34 insertions(+), 34 deletions(-)
Title: Download and Process GIMMS NDVI3g Data
Description: This is a set of functions to retrieve information about GIMMS
NDVI3g files currently available online; download (and re-arrange, in the
case of NDVI3g.v0) the half-monthly data sets; import downloaded files from
ENVI binary (NDVI3g.v0) or NetCDF format (NDVI3g.v1) directly into R based
on the widespread 'raster' package; conduct quality control; and generate
monthly composites (e.g., maximum values) from the half-monthly input data.
As a special gimmick, a method is included to conveniently apply the
Mann-Kendall trend test upon 'Raster*' images, optionally featuring
trend-free pre-whitening to account for lag-1 autocorrelation.
Author: Florian Detsch [cre, aut]
Maintainer: Florian Detsch <fdetsch@web.de>
Diff between gimms versions 1.1.3 dated 2020-03-19 and 1.2.0 dated 2021-04-16
DESCRIPTION | 28 +- LICENSE | 4 MD5 | 68 ++--- NAMESPACE | 43 +-- NEWS | 138 +++++----- NEWS.md | 138 +++++----- R/downloadGimms.R | 473 +++++++++++++++++++----------------- R/gimms-package.R | 29 +- R/gimmsControls.R | 513 ++++++++++++++++++++++------------------ R/monthlyComposite.R | 271 +++++++++++---------- R/monthlyIndices.R | 182 +++++++------- R/oldNaming.R | 28 +- R/qualityControl.R | 307 ++++++++++++----------- R/rasterizeGimms.R | 496 +++++++++++++++++++------------------- R/rearrangeFiles.R | 132 +++++----- R/significantTau.R | 402 ++++++++++++++++--------------- R/updateInventory.R | 207 +++++++++++----- README.md | 20 + build/partial.rdb |binary data/bale3g.v1.rda |binary data/kili3g.v0.rda |binary inst/extdata/dates_plv1.rds |only inst/extdata/inventory_plv1.rds |only inst/tinytest |only man/bale3g.v1.Rd | 32 +- man/downloadGimms.Rd | 255 ++++++++++--------- man/gimms-package.Rd | 67 ++--- man/kili3g.v0.Rd | 32 +- man/monthlyComposite.Rd | 156 ++++++------ man/monthlyIndices.Rd | 116 ++++----- man/oldNaming.Rd | 98 +++---- man/qualityControl.Rd | 118 ++++----- man/rasterizeGimms.Rd | 164 ++++++------ man/rearrangeFiles.Rd | 82 +++--- man/significantTau.Rd | 250 +++++++++---------- man/updateInventory.Rd | 118 +++++---- tests |only 37 files changed, 2632 insertions(+), 2335 deletions(-)
Title: Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Description: Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are non-repeated measures, non-longitudinal repeated measures (replicates) and longitudinal repeated measures. It also includes the estimation of the one-way intraclass correlation coefficient also known as reliability index. The estimation approaches implemented are variance components and U-statistics approaches.
Author: Josep Lluis Carrasco <jlcarrasco@ub.edu>, Josep Puig Martinez
<j.puig04@gmail.com>
Maintainer: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Diff between cccrm versions 2.0.1 dated 2020-06-10 and 2.0.2 dated 2021-04-16
DESCRIPTION | 14 +++++++------- MD5 | 19 ++++++++++++------- NAMESPACE | 5 +++-- R/extra_func.R | 5 ++++- R/ic.ccc.R | 3 ++- R/ic.icc.R |only R/icc.R |only R/print.icc.R |only R/summary.icc.R |only man/ccclon.Rd | 8 +++++++- man/ccclonw.Rd | 6 +++++- man/cccvc.Rd | 7 ++++++- man/icc.Rd |only 13 files changed, 46 insertions(+), 21 deletions(-)
Title: Mendelian Randomization Package
Description: Encodes several methods for performing Mendelian randomization
analyses with summarized data. Summarized data on genetic associations with the
exposure and with the outcome can be obtained from large consortia. These data
can be used for obtaining causal estimates using instrumental variable methods.
Author: Olena Yavorska <olena.yavorska@ludwig.ox.ac.uk>
James Staley <james.staley@bristol.ac.uk>
Maintainer: Stephen Burgess <sb452@medschl.cam.ac.uk>
Diff between MendelianRandomization versions 0.5.0 dated 2020-09-30 and 0.5.1 dated 2021-04-16
DESCRIPTION | 9 ++++----- MD5 | 10 +++++----- R/pheno_input-function.R | 18 +++++++++--------- build/vignette.rds |binary man/phenoscanner.Rd | 18 +++++++++--------- vignettes/Vignette_MR.html | 19 ++++++++++++++++++- 6 files changed, 45 insertions(+), 29 deletions(-)
More information about MendelianRandomization at CRAN
Permanent link
Title: Noise Quantification in High Throughput Sequencing Output
Description: Quantifies and removes technical noise from high-throughput
sequencing data. Two approaches are used, one based on the count
matrix, and one using the alignment BAM files directly.
Contains several options for every step of the process, as well
as tools to quality check and assess the stability of output.
Author: Ilias Moutsopoulos [aut, cre],
Irina Mohorianu [aut, ctb],
Hajk-Georg Drost [ctb],
Elze Lauzikaite [ctb]
Maintainer: Ilias Moutsopoulos <im383@cam.ac.uk>
Diff between noisyr versions 0.1.0 dated 2021-01-06 and 1.0.0 dated 2021-04-16
noisyr-0.1.0/noisyr/R/calculate_distance_matrices_counts.R |only noisyr-0.1.0/noisyr/R/calculate_distance_matrices_transcript.R |only noisyr-0.1.0/noisyr/R/calculate_profile.R |only noisyr-0.1.0/noisyr/R/calculate_threshold_fixed_density.R |only noisyr-0.1.0/noisyr/R/calculate_threshold_noise.R |only noisyr-0.1.0/noisyr/R/cast_matrix_to_double.R |only noisyr-0.1.0/noisyr/R/plot_distance_abundance.R |only noisyr-0.1.0/noisyr/R/remove_noise_matrix.R |only noisyr-0.1.0/noisyr/R/remove_noise_method.R |only noisyr-0.1.0/noisyr/man/calculate_distance_matrices_counts.Rd |only noisyr-0.1.0/noisyr/man/calculate_distance_matrices_transcript.Rd |only noisyr-0.1.0/noisyr/man/calculate_profile.Rd |only noisyr-0.1.0/noisyr/man/calculate_threshold_fixed_density.Rd |only noisyr-0.1.0/noisyr/man/calculate_threshold_noise.Rd |only noisyr-0.1.0/noisyr/man/cast_matrix_to_double.Rd |only noisyr-0.1.0/noisyr/man/plot_distance_abundance.Rd |only noisyr-0.1.0/noisyr/man/remove_noise_matrix.Rd |only noisyr-0.1.0/noisyr/man/remove_noise_method.Rd |only noisyr-1.0.0/noisyr/DESCRIPTION | 12 noisyr-1.0.0/noisyr/MD5 | 73 ++-- noisyr-1.0.0/noisyr/R/calculate_expression_profile.R |only noisyr-1.0.0/noisyr/R/calculate_expression_similarity_counts.R |only noisyr-1.0.0/noisyr/R/calculate_expression_similarity_transcript.R |only noisyr-1.0.0/noisyr/R/calculate_first_minimum_density.R |only noisyr-1.0.0/noisyr/R/calculate_noise_threshold.R |only noisyr-1.0.0/noisyr/R/calculate_noise_threshold_method_statistics.R |only noisyr-1.0.0/noisyr/R/cast_gtf_to_genes.R | 67 ++-- noisyr-1.0.0/noisyr/R/cast_matrix_to_numeric.R |only noisyr-1.0.0/noisyr/R/filter_genes_transcript.R |only noisyr-1.0.0/noisyr/R/get_methods_calculate_noise_threshold.R | 12 noisyr-1.0.0/noisyr/R/get_methods_correlation_distance.R | 36 +- noisyr-1.0.0/noisyr/R/noisyr.R |only noisyr-1.0.0/noisyr/R/noisyr_counts.R |only noisyr-1.0.0/noisyr/R/noisyr_transcript.R |only noisyr-1.0.0/noisyr/R/optimise_window_length.R | 154 ++++++---- noisyr-1.0.0/noisyr/R/plot_expression_similarity.R |only noisyr-1.0.0/noisyr/R/remove_noise_from_bams.R |only noisyr-1.0.0/noisyr/R/remove_noise_from_matrix.R |only noisyr-1.0.0/noisyr/README.md | 80 +++++ noisyr-1.0.0/noisyr/build |only noisyr-1.0.0/noisyr/inst |only noisyr-1.0.0/noisyr/man/calculate_expression_profile.Rd |only noisyr-1.0.0/noisyr/man/calculate_expression_similarity_counts.Rd |only noisyr-1.0.0/noisyr/man/calculate_expression_similarity_transcript.Rd |only noisyr-1.0.0/noisyr/man/calculate_first_minimum_density.Rd |only noisyr-1.0.0/noisyr/man/calculate_noise_threshold.Rd |only noisyr-1.0.0/noisyr/man/calculate_noise_threshold_method_statistics.Rd |only noisyr-1.0.0/noisyr/man/cast_gtf_to_genes.Rd | 16 - noisyr-1.0.0/noisyr/man/cast_matrix_to_numeric.Rd |only noisyr-1.0.0/noisyr/man/filter_genes_transcript.Rd |only noisyr-1.0.0/noisyr/man/get_methods_calculate_noise_threshold.Rd | 5 noisyr-1.0.0/noisyr/man/get_methods_correlation_distance.Rd | 5 noisyr-1.0.0/noisyr/man/noisyr.Rd |only noisyr-1.0.0/noisyr/man/noisyr_counts.Rd |only noisyr-1.0.0/noisyr/man/noisyr_transcript.Rd |only noisyr-1.0.0/noisyr/man/optimise_window_length.Rd | 42 +- noisyr-1.0.0/noisyr/man/plot_expression_similarity.Rd |only noisyr-1.0.0/noisyr/man/remove_noise_from_bams.Rd |only noisyr-1.0.0/noisyr/man/remove_noise_from_matrix.Rd |only noisyr-1.0.0/noisyr/vignettes |only 60 files changed, 329 insertions(+), 173 deletions(-)
Title: Dyadic Network Analysis
Description: Contains functions for the MCMC simulation of dyadic network models j2 (Zijlstra, 2017, <doi:10.1080/0022250X.2017.1387858>) and p2 (Van Duijn, Snijders & Zijlstra, 2004, <doi: 10.1046/j.0039-0402.2003.00258.x>), and the bidirectional (multilevel) counterpart of the the multilevel p2 model as described in Zijlstra, Van Duijn & Snijders (2009) <doi: 10.1348/000711007X255336>, the (multilevel) b2 model.
Author: Bonne J.H. Zijlstra <B.J.H.Zijlstra@uva.nl>
Maintainer: Bonne J.H. Zijlstra <B.J.H.Zijlstra@uva.nl>
Diff between dyads versions 1.1.3 dated 2020-12-17 and 1.1.4 dated 2021-04-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 4 +++- R/internalFunctionsDyads.R | 10 +++++----- build/partial.rdb |binary 5 files changed, 16 insertions(+), 14 deletions(-)
Title: Bridge Sampling for Marginal Likelihoods and Bayes Factors
Description: Provides functions for estimating marginal likelihoods, Bayes
factors, posterior model probabilities, and normalizing constants in general,
via different versions of bridge sampling (Meng & Wong, 1996,
<http://www3.stat.sinica.edu.tw/statistica/j6n4/j6n43/j6n43.htm>).
Gronau, Singmann, & Wagenmakers (2020) <doi:10.18637/jss.v092.i10>.
Author: Quentin F. Gronau [aut, cre] (<https://orcid.org/0000-0001-5510-6943>),
Henrik Singmann [aut] (<https://orcid.org/0000-0002-4842-3657>),
Jonathan J. Forster [ctb],
Eric-Jan Wagenmakers [ths],
The JASP Team [ctb],
Jiqiang Guo [ctb],
Jonah Gabry [ctb],
Ben Goodrich [ctb],
Kees Mulder [ctb],
Perry de Valpine [ctb]
Maintainer: Quentin F. Gronau <Quentin.F.Gronau@gmail.com>
Diff between bridgesampling versions 1.0-0 dated 2020-02-26 and 1.1-2 dated 2021-04-16
DESCRIPTION | 8 MD5 | 141 +- NAMESPACE | 100 - NEWS | 448 +++--- R/bf.R | 364 ++--- R/bridge_methods.R | 298 ++-- R/bridge_sampler.R | 1343 +++++++++----------- R/bridge_sampler_internals.R | 592 ++++---- R/bridge_sampler_normal.R | 352 ++--- R/bridge_sampler_tools.R | 62 R/bridge_sampler_warp3.R | 450 +++--- R/error_measures.R | 176 +- R/ier-data.R | 32 R/logml.R | 58 R/post_prob.R | 246 +-- R/turtles-data.R | 64 build/partial.rdb |binary build/vignette.rds |binary inst/doc/bridgesampling_example_jags.R | 348 ++--- inst/doc/bridgesampling_example_jags.Rmd | 452 +++--- inst/doc/bridgesampling_example_jags.html | 719 +++++----- inst/doc/bridgesampling_example_nimble.R | 228 +-- inst/doc/bridgesampling_example_nimble.Rmd | 322 ++-- inst/doc/bridgesampling_example_nimble.html | 591 ++++---- inst/doc/bridgesampling_example_stan.R | 244 +-- inst/doc/bridgesampling_example_stan.Rmd | 328 ++-- inst/doc/bridgesampling_example_stan.html | 609 ++++----- inst/doc/bridgesampling_paper.pdf |binary inst/doc/bridgesampling_paper.pdf.asis | 4 inst/doc/bridgesampling_paper_extended.pdf |binary inst/doc/bridgesampling_paper_extended.pdf.asis | 4 inst/doc/bridgesampling_stan_ttest.R | 274 ++-- inst/doc/bridgesampling_stan_ttest.Rmd | 388 ++--- inst/doc/bridgesampling_stan_ttest.html | 659 +++++---- inst/doc/bridgesampling_tutorial.pdf |binary inst/doc/bridgesampling_tutorial.pdf.asis | 4 man/bf.Rd | 138 +- man/bridge-methods.Rd | 78 - man/bridge_sampler.Rd | 1066 ++++++++------- man/error_measures.Rd | 110 - man/ier.Rd | 342 ++--- man/logml.Rd | 54 man/post_prob.Rd | 201 +- man/turtles.Rd | 324 ++-- tests/testthat.R | 8 tests/testthat/test-bf.R | 134 - tests/testthat/test-bridge_sampler.R | 566 ++++---- tests/testthat/test-bridge_sampler_Rcpp.R | 118 - tests/testthat/test-bridge_sampler_Rcpp_parallel.R | 124 - tests/testthat/test-bridge_sampler_mcmc.list.R | 722 +++++----- tests/testthat/test-bridge_sampler_parallel.R | 150 +- tests/testthat/test-bridge_sampler_print_method.R | 102 - tests/testthat/test-bridge_sampler_summary_method.R | 132 - tests/testthat/test-nimble_bridge_sampler.R | 114 - tests/testthat/test-post_prob.R | 72 - tests/testthat/test-stan_bridge_sampler_basic.R | 342 ++--- tests/testthat/test-stan_bridge_sampler_bugs.R | 357 +++-- tests/testthat/test-stanreg_bridge_sampler_basic.R | 70 - tests/testthat/test-vignette_example_jags.R | 554 ++++---- tests/testthat/test-vignette_example_nimble.R | 438 +++--- tests/testthat/test-vignette_example_stan.R | 458 +++--- tests/testthat/test-vignette_stan_ttest.R | 300 ++-- tests/testthat/test_dat.txt |only tests/testthat/unnormalized_normal_density.cpp | 42 tests/testthat/unnormalized_normal_density_mu.cpp | 44 vignettes/bridgesampling_example_jags.Rmd | 452 +++--- vignettes/bridgesampling_example_nimble.Rmd | 322 ++-- vignettes/bridgesampling_example_stan.Rmd | 328 ++-- vignettes/bridgesampling_paper.pdf.asis | 4 vignettes/bridgesampling_paper_extended.pdf.asis | 4 vignettes/bridgesampling_stan_ttest.Rmd | 388 ++--- vignettes/bridgesampling_tutorial.pdf.asis | 4 72 files changed, 9488 insertions(+), 9082 deletions(-)
More information about bridgesampling at CRAN
Permanent link
Title: Connector Between 'mlr3' and 'OpenML'
Description: Provides an interface to 'OpenML.org' to list and
download machine learning data and tasks. Data and tasks can be
automatically converted to 'mlr3' tasks. For a more sophisticated
interface which also allows uploading experiments, see the 'OpenML'
package.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3oml versions 0.4.2 dated 2021-02-22 and 0.4.3 dated 2021-04-16
mlr3oml-0.4.2/mlr3oml/R/status_codes.R |only mlr3oml-0.4.3/mlr3oml/DESCRIPTION | 6 mlr3oml-0.4.3/mlr3oml/MD5 | 23 +-- mlr3oml-0.4.3/mlr3oml/NAMESPACE | 1 mlr3oml-0.4.3/mlr3oml/NEWS.md | 4 mlr3oml-0.4.3/mlr3oml/R/OMLTask.R | 2 mlr3oml-0.4.3/mlr3oml/R/helper_download.R | 150 +++++++++++++------- mlr3oml-0.4.3/mlr3oml/R/helper_xml.R | 4 mlr3oml-0.4.3/mlr3oml/R/read_arff.R | 14 + mlr3oml-0.4.3/mlr3oml/R/zzz.R | 1 mlr3oml-0.4.3/mlr3oml/build/partial.rdb |binary mlr3oml-0.4.3/mlr3oml/man/OMLTask.Rd | 2 mlr3oml-0.4.3/mlr3oml/tests/testthat/test_OMLData.R | 5 13 files changed, 139 insertions(+), 73 deletions(-)
Title: Analyze Dose-Volume Histograms and Check Constraints
Description: Functionality for analyzing dose-volume histograms (DVH)
in radiation oncology: Read DVH text files, calculate DVH
metrics as well as generalized equivalent uniform dose (gEUD),
biologically effective dose (BED), equivalent dose in 2 Gy
fractions (EQD2), normal tissue complication probability
(NTCP), and tumor control probability (TCP). Show DVH
diagrams, check and visualize quality assurance constraints
for the DVH. Includes web-based graphical user interface.
Author: Daniel Wollschlaeger [aut, cre],
Heiko Karle [aut],
Heinz Schmidberger [ctb]
Maintainer: Daniel Wollschlaeger <wollschlaeger@uni-mainz.de>
Diff between DVHmetrics versions 0.3.10 dated 2020-03-19 and 0.4.1 dated 2021-04-16
DVHmetrics-0.3.10/DVHmetrics/inst/DVHshiny/helper.R |only DVHmetrics-0.3.10/DVHmetrics/inst/DVHshiny/server.R |only DVHmetrics-0.3.10/DVHmetrics/inst/DVHshiny/ui.R |only DVHmetrics-0.4.1/DVHmetrics/DESCRIPTION | 12 DVHmetrics-0.4.1/DVHmetrics/MD5 | 70 +- DVHmetrics-0.4.1/DVHmetrics/R/checkConstraint.R | 12 DVHmetrics-0.4.1/DVHmetrics/R/parseEclipse.R | 146 ++++-- DVHmetrics-0.4.1/DVHmetrics/R/runGUI.R | 17 DVHmetrics-0.4.1/DVHmetrics/R/unix/parseDVH.R | 4 DVHmetrics-0.4.1/DVHmetrics/R/windows/parseDVH.R | 4 DVHmetrics-0.4.1/DVHmetrics/build/vignette.rds |binary DVHmetrics-0.4.1/DVHmetrics/data/dataConstr.rda |binary DVHmetrics-0.4.1/DVHmetrics/data/dataMZ.rda |binary DVHmetrics-0.4.1/DVHmetrics/inst/ChangeLog | 18 DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/ABOUT.html | 243 +--------- DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/ABOUT.md | 8 DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app_ui_sidebar.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app_ui_tab_about.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app_ui_tab_bed_eqd2.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app_ui_tab_check_constraints.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app_ui_tab_data.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app_ui_tab_metrics.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app_ui_tab_show_constraints.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/app_ui_tab_show_dvh.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny/global.R |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny_bs4Dash_05 |only DVHmetrics-0.4.1/DVHmetrics/inst/DVHshiny_legacy |only DVHmetrics-0.4.1/DVHmetrics/inst/doc/DVHmetrics.R | 2 DVHmetrics-0.4.1/DVHmetrics/inst/doc/DVHmetrics.Rnw | 8 DVHmetrics-0.4.1/DVHmetrics/inst/doc/DVHmetrics.pdf |binary DVHmetrics-0.4.1/DVHmetrics/inst/doc/DVHshiny.pdf |binary DVHmetrics-0.4.1/DVHmetrics/man/DVHmetrics-package.Rd | 4 DVHmetrics-0.4.1/DVHmetrics/man/readDVH.Rd | 2 DVHmetrics-0.4.1/DVHmetrics/vignettes/DVHmetrics.Rnw | 8 DVHmetrics-0.4.1/DVHmetrics/vignettes/lit.bib | 52 +- 36 files changed, 291 insertions(+), 319 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-06 0.4.0
2019-05-16 0.3.1
2019-04-01 0.3.0
2019-02-24 0.2.0
2018-10-30 0.1.0
Title: PS-Integrated Methods for Incorporating RWE in Clinical Studies
Description: High-quality real-world data can be transformed into scientific
real-world evidence (RWE) for regulatory and healthcare decision-making
using proven analytical methods and techniques. For example, propensity
score (PS) methodology can be applied to pre-select a subset of real-world
data containing patients that are similar to those in the current clinical
study in terms of covariates, and to stratify the selected patients together
with those in the current study into more homogeneous strata. Then, methods
such as power prior approach or composite likelihood approach can be applied
in each stratum to draw inference for the parameters of interest. This
package provides functions that implement the PS-integrated RWE analysis
methods proposed in Wang et al. (2019) <doi:10.1080/10543406.2019.1657133>,
Wang et al. (2020) <doi:10.1080/10543406.2019.1684309> and Chen et al.
(2020) <doi:10.1080/10543406.2020.1730877>.
Author: Chenguang Wang [aut, cre]
Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Maintainer: Chenguang Wang <cwang68@jhmi.edu>
Diff between psrwe versions 1.2 dated 2020-09-08 and 1.3 dated 2021-04-16
DESCRIPTION | 8 +- MD5 | 21 +++-- NAMESPACE | 8 +- R/psrwe_complikel.R | 2 R/psrwe_package.R | 4 - R/psrwe_powerprior.R | 4 - R/psrwe_tools.R | 19 ++-- build/vignette.rds |binary inst/doc/vignette.html | 196 +++++++++++++++++++++++++++++-------------------- man/rwe_ps_powerp.Rd | 4 - man/tkCallFun.Rd |only man/tkExpRst.Rd |only man/tkMakeLocal.Rd |only 13 files changed, 156 insertions(+), 110 deletions(-)
More information about diffmatchpatch at CRAN
Permanent link
Title: Assertion and Message Functions
Description: Enhanced message functions (cat() / message() / warning() / error())
using wrappers around sprintf(). Also, multiple assertion functions
(e.g. to check class, length, values, files, arguments, etc.).
Author: Florian Privé [aut, cre]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigassertr versions 0.1.3 dated 2020-04-01 and 0.1.4 dated 2021-04-16
DESCRIPTION | 11 +++----- MD5 | 12 ++++----- NAMESPACE | 3 +- R/assert.R | 11 ++++++++ man/assert.Rd | 4 +++ man/printf.Rd | 56 +++++++++++++++++++++---------------------- tests/testthat/test-assert.R | 15 +++++++++++ 7 files changed, 71 insertions(+), 41 deletions(-)
Title: Randomized Singular Value Decomposition
Description: Low-rank matrix decompositions are fundamental tools and widely used for data
analysis, dimension reduction, and data compression. Classically, highly accurate
deterministic matrix algorithms are used for this task. However, the emergence of
large-scale data has severely challenged our computational ability to analyze big data.
The concept of randomness has been demonstrated as an effective strategy to quickly produce
approximate answers to familiar problems such as the singular value decomposition (SVD).
The rsvd package provides several randomized matrix algorithms such as the randomized
singular value decomposition (rsvd), randomized principal component analysis (rpca),
randomized robust principal component analysis (rrpca), randomized interpolative
decomposition (rid), and the randomized CUR decomposition (rcur). In addition several plot
functions are provided.
Author: N. Benjamin Erichson [aut, cre]
Maintainer: N. Benjamin Erichson <erichson@berkeley.edu>
Diff between rsvd versions 1.0.3 dated 2020-02-17 and 1.0.5 dated 2021-04-16
rsvd-1.0.3/rsvd/data/datalist |only rsvd-1.0.5/rsvd/DESCRIPTION | 13 +++++++------ rsvd-1.0.5/rsvd/MD5 | 34 +++++++++++++++++----------------- rsvd-1.0.5/rsvd/R/digits.R | 2 -- rsvd-1.0.5/rsvd/R/rcur.R | 4 ++-- rsvd-1.0.5/rsvd/R/rid.R | 9 +++++---- rsvd-1.0.5/rsvd/R/rpca.R | 4 ++-- rsvd-1.0.5/rsvd/R/rqb.R | 4 ++-- rsvd-1.0.5/rsvd/R/rrpca.R | 4 ++-- rsvd-1.0.5/rsvd/R/rsvd.R | 4 ++-- rsvd-1.0.5/rsvd/build |only rsvd-1.0.5/rsvd/man/digits.Rd | 5 ++--- rsvd-1.0.5/rsvd/man/rcur.Rd | 4 ++-- rsvd-1.0.5/rsvd/man/rid.Rd | 9 +++++---- rsvd-1.0.5/rsvd/man/rpca.Rd | 4 ++-- rsvd-1.0.5/rsvd/man/rqb.Rd | 4 ++-- rsvd-1.0.5/rsvd/man/rrpca.Rd | 4 ++-- rsvd-1.0.5/rsvd/man/rsvd.Rd | 4 ++-- rsvd-1.0.5/rsvd/man/tiger.Rd | 4 +++- 19 files changed, 59 insertions(+), 57 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-18 0.6.7
2021-02-14 0.6.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-25 1.1.18
2020-07-28 1.1.14
2020-04-23 1.1.11
2020-04-02 1.1.10
2020-03-13 1.1.7
2020-01-28 1.1.3
2019-11-27 1.1.1
2019-11-19 1.1.0
2019-11-02 1.0.25
2019-08-30 1.0.18
2019-06-27 1.0.14
2019-02-13 1.0.12
2018-06-21 1.0.8
2018-05-02 1.0.5
2018-04-16 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-20 0.4.0
2020-08-10 0.3.1
2020-06-10 0.3.0
Title: Client Library for SpatioTemporal Asset Catalog
Description: Provides functions to access, search and download spacetime earth
observation data via SpatioTemporal Asset Catalog (STAC). This package
supports the version 0.8.1 or higher of the STAC specification
(<http://stacspec.org>).
Author: Brazil Data Cube Team [cre, aut],
National Institute for Space Research (INPE) [cph]
Maintainer: Brazil Data Cube Team <brazildatacube@inpe.br>
Diff between rstac versions 0.9.0 dated 2020-12-14 and 0.9.1 dated 2021-04-16
DESCRIPTION | 9 ++--- MD5 | 50 +++++++++++++-------------- NEWS.md | 11 +++++- R/assets_download.R | 18 +++++++--- R/collections.R | 4 +- R/documents.R | 40 +++++++++++++++++++--- R/ext_query.R | 2 - R/items.R | 4 +- R/print.R | 6 +-- R/request.R | 4 +- R/stac.R | 2 - R/stac_search.R | 4 +- R/utils.R | 15 ++++---- README.md | 88 +++++++++++++++++++++++++++---------------------- man/assets_download.Rd | 2 - man/assets_list.Rd | 11 ++++-- man/collections.Rd | 4 +- man/ext_query.Rd | 2 - man/items.Rd | 4 +- man/items_fields.Rd | 2 - man/items_group.Rd | 2 - man/items_reap.Rd | 2 - man/print.Rd | 6 +-- man/request.Rd | 4 +- man/stac.Rd | 2 - man/stac_search.Rd | 4 +- 26 files changed, 182 insertions(+), 120 deletions(-)