Title: Amend, Augment and Aid Analysis of John Snow's Cholera Map
Description: Amends errors, augments data and aids analysis of John Snow's map
of the 1854 London cholera outbreak.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between cholera versions 0.7.0 dated 2019-08-28 and 0.7.5 dated 2021-04-21
cholera-0.7.0/cholera/man/figures/README-unnamed-chunk-6-2.png |only cholera-0.7.5/cholera/DESCRIPTION | 13 cholera-0.7.5/cholera/MD5 | 302 ++++---- cholera-0.7.5/cholera/NAMESPACE | 11 cholera-0.7.5/cholera/NEWS | 38 - cholera-0.7.5/cholera/R/addCase.R | 25 cholera-0.7.5/cholera/R/addEuclideanPath.R | 12 cholera-0.7.5/cholera/R/addKernelDensity.R | 8 cholera-0.7.5/cholera/R/addLandmarks.R | 3 cholera-0.7.5/cholera/R/addMilePosts.R | 8 cholera-0.7.5/cholera/R/addNeighborhoodCases.R | 4 cholera-0.7.5/cholera/R/addNeighborhoodEuclidean.R | 4 cholera-0.7.5/cholera/R/addNeighborhoodWalking.R | 4 cholera-0.7.5/cholera/R/addSnow.R | 2 cholera-0.7.5/cholera/R/addWhitehead.R | 36 cholera-0.7.5/cholera/R/caseLocator.R | 10 cholera-0.7.5/cholera/R/cholera.R | 4 cholera-0.7.5/cholera/R/classifierAudit.R | 10 cholera-0.7.5/cholera/R/data.R | 20 cholera-0.7.5/cholera/R/distanceTime.R | 4 cholera-0.7.5/cholera/R/euclidean.R | 32 cholera-0.7.5/cholera/R/euclideanPath.R | 57 - 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cholera-0.7.5/cholera/R/timeSeries.R | 5 cholera-0.7.5/cholera/R/unitMeter.R | 45 - cholera-0.7.5/cholera/R/unstack.R | 2 cholera-0.7.5/cholera/R/unstackAuxiliaryFunctions.R | 4 cholera-0.7.5/cholera/R/voronoi.R | 29 cholera-0.7.5/cholera/R/walking.R | 22 cholera-0.7.5/cholera/R/walkingAuxiliaryFunctions.R | 7 cholera-0.7.5/cholera/R/walkingPath.R | 10 cholera-0.7.5/cholera/R/winterTemperatures.R |only cholera-0.7.5/cholera/R/withinRadius.R | 2 cholera-0.7.5/cholera/README.md | 52 - cholera-0.7.5/cholera/build/vignette.rds |binary cholera-0.7.5/cholera/data/oxford.weather.rda |only cholera-0.7.5/cholera/inst/doc/duplicate.missing.cases.R | 8 cholera-0.7.5/cholera/inst/doc/duplicate.missing.cases.html | 290 +------ cholera-0.7.5/cholera/inst/doc/kernel.density.R | 26 cholera-0.7.5/cholera/inst/doc/kernel.density.Rmd | 21 cholera-0.7.5/cholera/inst/doc/kernel.density.html | 260 +----- cholera-0.7.5/cholera/inst/doc/parallelization.R | 2 cholera-0.7.5/cholera/inst/doc/parallelization.Rmd | 5 cholera-0.7.5/cholera/inst/doc/parallelization.html | 208 ----- cholera-0.7.5/cholera/inst/doc/roads.R | 12 cholera-0.7.5/cholera/inst/doc/roads.Rmd | 3 cholera-0.7.5/cholera/inst/doc/roads.html | 333 ++------ cholera-0.7.5/cholera/inst/doc/tiles.polygons.R | 8 cholera-0.7.5/cholera/inst/doc/tiles.polygons.html | 374 ++-------- cholera-0.7.5/cholera/inst/doc/time.series.R | 4 cholera-0.7.5/cholera/inst/doc/time.series.html | 248 +----- cholera-0.7.5/cholera/inst/doc/unstacking.bars.R | 14 cholera-0.7.5/cholera/inst/doc/unstacking.bars.html | 360 ++------- cholera-0.7.5/cholera/man/addCase.Rd | 8 cholera-0.7.5/cholera/man/addIndexCase.Rd | 3 cholera-0.7.5/cholera/man/addKernelDensity.Rd | 4 cholera-0.7.5/cholera/man/addMilePosts.Rd | 2 cholera-0.7.5/cholera/man/addNeighborhoodCases.Rd | 4 cholera-0.7.5/cholera/man/addNeighborhoodEuclidean.Rd | 4 cholera-0.7.5/cholera/man/addNeighborhoodWalking.Rd | 4 cholera-0.7.5/cholera/man/addSnow.Rd | 2 cholera-0.7.5/cholera/man/addVoronoi.Rd | 5 cholera-0.7.5/cholera/man/addWhitehead.Rd | 6 cholera-0.7.5/cholera/man/anchor.case.Rd | 6 cholera-0.7.5/cholera/man/border.Rd | 6 cholera-0.7.5/cholera/man/cholera-package.Rd | 4 cholera-0.7.5/cholera/man/fatalities.Rd | 6 cholera-0.7.5/cholera/man/fatalities.address.Rd | 6 cholera-0.7.5/cholera/man/fatalities.unstacked.Rd | 6 cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-10-1.png |binary cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-10-2.png |binary cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-11-1.png |only cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-11-2.png |only cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-4-1.png |binary cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-4-2.png |binary cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-5-1.png |binary cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-5-2.png |binary cholera-0.7.5/cholera/man/figures/README-unnamed-chunk-6-1.png |binary 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cholera-0.7.5/cholera/man/ortho.proj.pump.vestry.Rd | 6 cholera-0.7.5/cholera/man/orthogonalProjection.Rd | 5 cholera-0.7.5/cholera/man/oxford.weather.Rd |only cholera-0.7.5/cholera/man/oxfordWeather.Rd |only cholera-0.7.5/cholera/man/pearsonResiduals.Rd | 2 cholera-0.7.5/cholera/man/plague.pit.Rd | 6 cholera-0.7.5/cholera/man/plot.euclidean.Rd | 5 cholera-0.7.5/cholera/man/plot.euclidean_path.Rd | 3 cholera-0.7.5/cholera/man/plot.iso.Rd |only cholera-0.7.5/cholera/man/plot.oxfordWeather.Rd |only cholera-0.7.5/cholera/man/plot.povertyLondon.Rd |only cholera-0.7.5/cholera/man/plot.voronoi.Rd | 4 cholera-0.7.5/cholera/man/plot.walking.Rd | 2 cholera-0.7.5/cholera/man/plot.walking_path.Rd | 2 cholera-0.7.5/cholera/man/plot.winterTemperatures.Rd |only cholera-0.7.5/cholera/man/povertyLondon.Rd |only cholera-0.7.5/cholera/man/print.euclidean.Rd | 2 cholera-0.7.5/cholera/man/print.iso.Rd |only cholera-0.7.5/cholera/man/print.walking.Rd | 2 cholera-0.7.5/cholera/man/print.walking_path.Rd | 2 cholera-0.7.5/cholera/man/profile2D.Rd | 4 cholera-0.7.5/cholera/man/profile3D.Rd | 4 cholera-0.7.5/cholera/man/pumpCase.Rd | 2 cholera-0.7.5/cholera/man/pumpData.Rd | 2 cholera-0.7.5/cholera/man/pumps.Rd | 6 cholera-0.7.5/cholera/man/pumps.vestry.Rd | 6 cholera-0.7.5/cholera/man/regular.cases.Rd | 6 cholera-0.7.5/cholera/man/road.segments.Rd | 6 cholera-0.7.5/cholera/man/roads.Rd | 6 cholera-0.7.5/cholera/man/segmentHighlight.Rd |only cholera-0.7.5/cholera/man/sim.ortho.proj.Rd | 6 cholera-0.7.5/cholera/man/sim.pump.case.Rd | 8 cholera-0.7.5/cholera/man/sim.walking.distance.Rd | 6 cholera-0.7.5/cholera/man/simulateFatalities.Rd | 2 cholera-0.7.5/cholera/man/simulateWalkingDistance.Rd | 2 cholera-0.7.5/cholera/man/snow.neighborhood.Rd | 6 cholera-0.7.5/cholera/man/snowMap.Rd | 3 cholera-0.7.5/cholera/man/streetNumberLocator.Rd | 9 cholera-0.7.5/cholera/man/summary.euclidean.Rd | 2 cholera-0.7.5/cholera/man/summary.walking.Rd | 2 cholera-0.7.5/cholera/man/unitMeter.Rd | 9 cholera-0.7.5/cholera/man/unstackFatalities.Rd | 2 cholera-0.7.5/cholera/man/walkingPath.Rd | 2 cholera-0.7.5/cholera/man/winterTemperatures.Rd |only cholera-0.7.5/cholera/vignettes/kernel.density.Rmd | 21 cholera-0.7.5/cholera/vignettes/parallelization.Rmd | 5 cholera-0.7.5/cholera/vignettes/roads.Rmd | 3 163 files changed, 1225 insertions(+), 2180 deletions(-)
Title: Collection of Household Survey Packages Conducted by IBGE
Description: Provides access to packages developed for downloading, reading and analysing microdata
from household surveys conducted by Brazilian Institute of Geography and Statistics - IBGE.
More information can be obtained from the official website <https://www.ibge.gov.br/>.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between SIPDIBGE versions 0.1.1 dated 2021-01-29 and 0.1.2 dated 2021-04-21
SIPDIBGE-0.1.1/SIPDIBGE/inst/extdata/sipd_logo.png |only SIPDIBGE-0.1.2/SIPDIBGE/DESCRIPTION | 11 +++++------ SIPDIBGE-0.1.2/SIPDIBGE/MD5 | 5 +++-- SIPDIBGE-0.1.2/SIPDIBGE/inst/extdata/am_logo.png |only SIPDIBGE-0.1.2/SIPDIBGE/inst/extdata/sipd_logo.PNG |only 5 files changed, 8 insertions(+), 8 deletions(-)
Title: Actuarial Functions for Non-Life Insurance Modelling
Description: Assists actuaries and other insurance modellers in pricing,
reserving and capital modelling for non-life insurance and
reinsurance modelling. Provides functions that help model
excess levels, capping and pure Incurred but not reported
claims (pure IBNR).
Includes capped mean, exposure curves and increased limit
factor curves (ILFs) for LogNormal, Gamma, Pareto, Sliced
LogNormal-Pareto and Sliced Gamma-Pareto distributions.
Includes mean, probability density function (pdf), cumulative
probability function (cdf) and inverse cumulative probability
function for Sliced LogNormal-Pareto and Sliced Gamma-Pareto
distributions.
Includes calculating pure IBNR exposure with LogNormal and
Gamma distribution for reporting delay.
Author: Yiannis Parizas [aut, cre]
Maintainer: Yiannis Parizas <yiannis.parizas@gmail.com>
Diff between NetSimR versions 0.1.0 dated 2019-08-20 and 0.1.1 dated 2021-04-21
DESCRIPTION | 11 +++--- MD5 | 30 +++++++++---------- NEWS | 5 +++ build/vignette.rds |binary inst/CITATION | 8 ++--- inst/doc/CappedMean.R | 8 ++--- inst/doc/CappedMean.Rmd | 2 - inst/doc/CappedMean.html | 58 +++++++++++++++++++++++++++--------- inst/doc/PureIBNR.R | 6 +-- inst/doc/PureIBNR.Rmd | 2 - inst/doc/PureIBNR.html | 60 ++++++++++++++++++++++++++++---------- inst/doc/SlicedDistributions.R | 6 +-- inst/doc/SlicedDistributions.html | 56 +++++++++++++++++++++++++++-------- man/NetSimR.Rd | 1 vignettes/CappedMean.Rmd | 2 - vignettes/PureIBNR.Rmd | 2 - 16 files changed, 175 insertions(+), 82 deletions(-)
Title: Access the Trello API
Description: An R client for the Trello API. Supports free-tier features such as
access to private boards, creating and updating cards and other resources,
and downloading data in a structured way.
Author: Jakub Chromec [aut, cre]
Maintainer: Jakub Chromec <chromec.jakub@gmail.com>
Diff between trelloR versions 0.7.0 dated 2021-01-28 and 0.7.1 dated 2021-04-21
DESCRIPTION | 9 MD5 | 51 ++-- NAMESPACE | 1 R/create_wrappers.R | 24 ++ R/trello_api_verb.R | 19 + R/update_wrappers.R | 2 README.md | 20 - build/vignette.rds |binary inst/doc/auth-access.Rmd | 2 inst/doc/auth-access.html | 288 ++++--------------------- inst/doc/create-update-delete.html | 286 ++++--------------------- inst/doc/getting-public-data.html | 381 ++++++++-------------------------- man/add_board.Rd | 1 man/add_card.Rd | 3 man/add_card_attachment.Rd |only man/add_checkitem.Rd | 1 man/add_checklist.Rd | 1 man/add_comment.Rd | 1 man/add_label.Rd | 1 man/add_list.Rd | 1 man/add_member.Rd | 1 man/create_resource.Rd | 1 man/update_checkitem.Rd | 2 tests/testthat/attachment.jpg |only tests/testthat/image-attribution.txt |only tests/testthat/test-get.R | 3 tests/testthat/test-put-post-delete.R | 91 +++++--- vignettes/auth-access.Rmd | 2 28 files changed, 354 insertions(+), 838 deletions(-)
Title: Nonlinear Regression for Agricultural Applications
Description: Additional nonlinear regression functions using self-start (SS) algorithms. One of the functions is the Beta growth function proposed by Yin et al. (2003) <doi:10.1093/aob/mcg029>. There are several other functions with breakpoints (e.g. linear-plateau, plateau-linear, exponential-plateau, plateau-exponential, quadratic-plateau, plateau-quadratic and bilinear), a non-rectangular hyperbola and a bell-shaped curve. Twenty one (21) new self-start (SS) functions in total. This package also supports the publication 'Nonlinear regression Models and applications in agricultural research' by Archontoulis and Miguez (2015) <doi:10.2134/agronj2012.0506>, a book chapter with similar material <doi:10.2134/appliedstatistics.2016.0003.c15> and a publication by Oddi et. al. (2019) in Ecology and Evolution <doi:10.1002/ece3.5543>. The function 'nlsLMList' uses 'nlsLM' for fitting, but it is otherwise almost identical to 'nlme::nlsList'.In addition, this release of the package provides functions for conducting simulations for 'nlme' and 'gnls' objects as well as bootstrapping. These functions are intended to work with the modeling framework of the 'nlme' package. It also provides four vignettes with extended examples.
Author: Fernando Miguez [aut, cre] (<https://orcid.org/0000-0002-4627-8329>),
José Pinheiro [ctb, cph] (author of nlme::nlsList, nlme::predict.gnls,
nlme::predict.nlme),
Douglas Bates [ctb, cph] (author of nlme::nlsList, nlme::predict.gnls,
nlme::predict.nlme),
R-core [ctb, cph]
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between nlraa versions 0.83 dated 2021-01-05 and 0.89 dated 2021-04-21
DESCRIPTION | 6 +-- MD5 | 37 ++++++++++++-------- NAMESPACE | 14 +++++++ R/IA_tab.R |only R/SSpquad3.R |only R/SSquadp3.R |only R/predict_nlme.R | 12 ++++-- R/predict_nls.R | 11 +++--- README.md | 45 ++++++++++++++++++++++-- build/partial.rdb |binary inst/doc/Bootstrapping.html | 67 +++++++++---------------------------- inst/doc/Models-and-Functions.html | 53 ++++++----------------------- inst/doc/nlraa-AgronJ-paper.html | 53 ++++++----------------------- inst/doc/nlraa-Oddi-LFMC.html | 53 ++++++----------------------- inst/doc/nlraa.Rmd | 26 +++++++------- inst/doc/nlraa.html | 60 ++++++++------------------------- man/IA_tab.Rd |only man/R2M.Rd |only man/SSpquad3.Rd |only man/SSquadp3.Rd |only man/predict_nlme.Rd | 19 ++++++++-- man/predict_nls.Rd | 11 +++--- vignettes/nlraa.Rmd | 26 +++++++------- 23 files changed, 211 insertions(+), 282 deletions(-)
Title: Estimation and Prediction Methods for High-Dimensional Mixed
Frequency Time Series Data
Description: The 'midasml' package implements estimation and prediction methods for high-dimensional mixed-frequency (MIDAS) time-series and panel data regression models. The regularized MIDAS models are estimated using orthogonal (e.g. Legendre) polynomials and sparse-group LASSO (sg-LASSO) estimator. For more information on the `midasml' approach see Babii, Ghysels, and Striaukas (2021, JBES forthcoming) <doi:10.1080/07350015.2021.1899933>. The package is equipped with the fast implementation of the sg-LASSO estimator by means of proximal block coordinate descent. High-dimensional mixed frequency time-series data can also be easily manipulated with functions provided in the package.
Author: Jonas Striaukas [cre, aut],
Andrii Babii [aut],
Eric Ghysels [aut],
Alex Kostrov [ctb] (Contributions to analytical gradients for
non-linear low-dimensional MIDAS estimation code)
Maintainer: Jonas Striaukas <jonas.striaukas@gmail.com>
Diff between midasml versions 0.1.0 dated 2021-04-14 and 0.1.2 dated 2021-04-21
midasml-0.1.0/midasml/build |only midasml-0.1.2/midasml/DESCRIPTION | 10 +-- midasml-0.1.2/midasml/MD5 | 47 ++++++++------- midasml-0.1.2/midasml/NAMESPACE | 27 +++++++- midasml-0.1.2/midasml/R/cv.panel.sglfit.R | 58 ++++++++++++------- midasml-0.1.2/midasml/R/cv.sglfit.R | 55 ++++++++++++------ midasml-0.1.2/midasml/R/ic.panel.sglfit.R | 11 +-- midasml-0.1.2/midasml/R/ic.sglfit.R | 9 +- midasml-0.1.2/midasml/R/midasml-package.R |only midasml-0.1.2/midasml/R/predict.cv.sglfit.R |only midasml-0.1.2/midasml/R/predict.ic.sglfit.R |only midasml-0.1.2/midasml/R/reg.panel.sgl.R | 5 - midasml-0.1.2/midasml/R/reg.sgl.R | 5 - midasml-0.1.2/midasml/R/sglfit.R | 14 ++-- midasml-0.1.2/midasml/R/sglfitpath.R | 6 + midasml-0.1.2/midasml/man/cv.panel.sglfit.Rd | 30 ++++++--- midasml-0.1.2/midasml/man/cv.sglfit.Rd | 29 ++++++--- midasml-0.1.2/midasml/man/ic.panel.sglfit.Rd | 5 - midasml-0.1.2/midasml/man/ic.sglfit.Rd | 5 - midasml-0.1.2/midasml/man/midasml-package.Rd | 20 +----- midasml-0.1.2/midasml/man/predict.cv.panel.sglfit.Rd |only midasml-0.1.2/midasml/man/predict.cv.sglfit.Rd |only midasml-0.1.2/midasml/man/predict.ic.panel.sglfit.Rd |only midasml-0.1.2/midasml/man/predict.ic.sglfit.Rd |only midasml-0.1.2/midasml/man/reg.panel.sgl.Rd | 5 - midasml-0.1.2/midasml/man/reg.sgl.Rd | 5 - midasml-0.1.2/midasml/man/sglfit.Rd | 10 +-- midasml-0.1.2/midasml/src/maxlambda.f90 | 3 midasml-0.1.2/midasml/src/midasml_init.c |only 29 files changed, 229 insertions(+), 130 deletions(-)
Title: Synoptic Climate Classification and Spatial Regionalization of
Environmental Data
Description: Set of functions to compute different types of synoptic classification methods and for analysing their effect on environmental variables. More information about the methods used in Lemus-Canovas et al. 2019 <DOI:10.1016/j.atmosres.2019.01.018>, Martin-Vide et al. 2008 <DOI:10.5194/asr-2-99-2008>, Jenkinson and Collison 1977.
Author: Marc Lemus-Canovas [aut, cre] (<https://orcid.org/0000-0002-0925-3827>),
Dominic Roye [ctb] (<https://orcid.org/0000-0002-5516-6396>)
Maintainer: Marc Lemus-Canovas <mlemus@ub.edu>
Diff between synoptReg versions 1.2.0 dated 2021-04-20 and 1.2.1 dated 2021-04-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/lamb_clas.R | 3 +-- R/som_clas.R | 4 ++-- R/synoptclas.R | 2 +- man/som_clas.Rd | 4 ++-- man/synoptclas.Rd | 2 +- 7 files changed, 16 insertions(+), 17 deletions(-)
Title: Get Precision of Means Under Various Designs and Sampling
Schemes
Description: Computes standard error and confidence interval of various descriptive statistics under
various designs and sampling schemes. The main function, superbPlot(), can either return a plot
or a dataframe with the statistic and its precision interval so that other plotting package
can be used. See Cousineau (2017) <doi:10.5709/acp-0214-z> for a review or Cousineau (2005)
<doi:10.20982/tqmp.01.1.p042>, Morey (2008) <doi:10.20982/tqmp.04.2.p061>, Baguley (2012)
<doi:10.3758/s13428-011-0123-7>, Cousineau & Laurencelle (2016) <doi:10.1037/met0000055>,
Cousineau & O'Brien (2014) <doi:10.3758/s13428-013-0441-z>, Calderini & Harding
<doi:10.20982/tqmp.15.1.p001>.
Author: Denis Cousineau [aut, cre],
Bradley Harding [ctb],
Marc-Andre Goulet [ctb],
Jesika Walker [art]
Maintainer: Denis Cousineau <denis.cousineau@uottawa.ca>
Diff between superb versions 0.9.4.2 dated 2021-03-20 and 0.9.5.0 dated 2021-04-21
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Title: Computation of Risk-Based Portfolios
Description: Collection of functions designed to compute risk-based portfolios as described
in Ardia et al. (2017) <doi:10.1007/s10479-017-2474-7> and Ardia et al. (2017) <doi:10.21105/joss.00171>.
Author: David Ardia [aut, cre, cph] (<https://orcid.org/0000-0003-2823-782X>),
Kris Boudt [aut],
Jean-Philippe Gagnon-Fleury [aut]
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between RiskPortfolios versions 2.1.4 dated 2020-04-20 and 2.1.5 dated 2021-04-21
RiskPortfolios-2.1.4/RiskPortfolios/README.md |only RiskPortfolios-2.1.4/RiskPortfolios/data/Industry_10.rdata |only RiskPortfolios-2.1.5/RiskPortfolios/COPYING | 680 +++++------ RiskPortfolios-2.1.5/RiskPortfolios/DESCRIPTION | 10 RiskPortfolios-2.1.5/RiskPortfolios/MD5 | 39 RiskPortfolios-2.1.5/RiskPortfolios/NAMESPACE | 28 RiskPortfolios-2.1.5/RiskPortfolios/NEWS | 4 RiskPortfolios-2.1.5/RiskPortfolios/R/RiskPortfolios.R | 7 RiskPortfolios-2.1.5/RiskPortfolios/R/covEstimation.R | 4 RiskPortfolios-2.1.5/RiskPortfolios/R/meanEstimation.R | 2 RiskPortfolios-2.1.5/RiskPortfolios/R/optimalPortfolio.R | 8 RiskPortfolios-2.1.5/RiskPortfolios/R/semidevEstimation.R | 1 RiskPortfolios-2.1.5/RiskPortfolios/build/partial.rdb |binary RiskPortfolios-2.1.5/RiskPortfolios/data/Industry_10.rda |only RiskPortfolios-2.1.5/RiskPortfolios/inst/CITATION | 68 - RiskPortfolios-2.1.5/RiskPortfolios/inst/COPYRIGHTS | 2 RiskPortfolios-2.1.5/RiskPortfolios/man/Industry_10.Rd | 42 RiskPortfolios-2.1.5/RiskPortfolios/man/RiskPortfolios.Rd | 174 +- RiskPortfolios-2.1.5/RiskPortfolios/man/covEstimation.Rd | 311 ++--- RiskPortfolios-2.1.5/RiskPortfolios/man/meanEstimation.Rd | 161 +- RiskPortfolios-2.1.5/RiskPortfolios/man/optimalPortfolio.Rd | 515 ++++---- RiskPortfolios-2.1.5/RiskPortfolios/man/semidevEstimation.Rd | 142 +- 22 files changed, 1089 insertions(+), 1109 deletions(-)
More information about RiskPortfolios at CRAN
Permanent link
Title: Steve's Toy Data for Teaching About a Variety of Methodological,
Social, and Political Topics
Description: This is a collection of various kinds of data with broad uses for teaching.
My students, and academics like me who teach the same topics I teach, should find
this useful if their teaching workflow is also built around the R programming
language. The applications are multiple but mostly cluster on topics of statistical
methodology, international relations, and political economy.
Author: Steve Miller [aut, cre] (<https://orcid.org/0000-0003-4072-6263>)
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between stevedata versions 0.3.1 dated 2021-04-07 and 0.4.0 dated 2021-04-21
stevedata-0.3.1/stevedata/build |only stevedata-0.3.1/stevedata/inst |only stevedata-0.3.1/stevedata/vignettes |only stevedata-0.4.0/stevedata/DESCRIPTION | 11 stevedata-0.4.0/stevedata/MD5 | 24 - stevedata-0.4.0/stevedata/NEWS.md |only stevedata-0.4.0/stevedata/R/rd-af_crime93.R | 4 stevedata-0.4.0/stevedata/R/rd-anes_partytherms.R |only stevedata-0.4.0/stevedata/R/rd-co2emissions.R | 2 stevedata-0.4.0/stevedata/R/rd-turnips.R |only stevedata-0.4.0/stevedata/README.md | 284 ++++++++++---------- stevedata-0.4.0/stevedata/data/anes_partytherms.rda |only stevedata-0.4.0/stevedata/data/turnips.rda |only stevedata-0.4.0/stevedata/man/af_crime93.Rd | 4 stevedata-0.4.0/stevedata/man/anes_partytherms.Rd |only stevedata-0.4.0/stevedata/man/co2emissions.Rd | 2 stevedata-0.4.0/stevedata/man/turnips.Rd |only 17 files changed, 166 insertions(+), 165 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2020) <arXiv:2004.02653> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the included version of Eigen [ctb, cph],
Timothy A. Davis [cph],
Guolin Ke [ctb],
Damien Soukhavong [ctb],
James Lamb [ctb],
Other authors of LightGBM for the included version of LightGBM [ctb],
Microsoft Corporation [cph],
Dropbox, Inc. [cph],
Jay Loden [cph],
Dave Daeschler [cph],
Giampaolo Rodola [cph],
Alberto Ferreira [ctb],
Daniel Lemire [ctb],
Victor Zverovich [cph],
IBM Corporation [ctb],
Keith O'Hara [cph]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 0.5.0 dated 2021-03-12 and 0.6.0 dated 2021-04-21
DESCRIPTION | 14 MD5 | 168 + NAMESPACE | 2 R/GPModel.R | 225 +- R/gpb.Dataset.R | 3 R/gpb.cv.R | 4 R/gpb.train.R | 4 R/gpboost.R | 13 configure.ac | 2 demo/GPBoost_algorithm.R | 32 demo/linear_Gaussian_process_mixed_effects_models.R | 8 man/GPModel.Rd | 25 man/GPModel_shared_params.Rd | 25 man/fit.GPModel.Rd | 4 man/fit.Rd | 4 man/fitGPModel.Rd | 29 man/gpb.cv.Rd | 15 man/gpb.grid.search.tune.parameters.Rd | 13 man/gpb.train.Rd | 13 man/gpb_shared_params.Rd | 13 man/gpboost.Rd | 13 man/loadGPModel.Rd | 3 man/saveGPModel.Rd | 3 man/set_prediction_data.GPModel.Rd |only man/set_prediction_data.Rd |only src/GP_utils.cpp | 186 +- src/Vecchia_utils.cpp | 37 src/c_api.cpp | 29 src/gpboost_R.cpp | 29 src/gpboost_R.h | 4 src/include/GPBoost/GP_utils.h | 83 src/include/GPBoost/cov_fcts.h | 295 ++- src/include/GPBoost/likelihoods.h | 334 ++- src/include/GPBoost/re_comp.h | 239 +- src/include/GPBoost/re_model.h | 46 src/include/GPBoost/re_model_template.h | 1182 +++++++++----- src/include/GPBoost/sparse_matrix_utils.h | 66 src/include/GPBoost/type_defs.h | 5 src/include/LICENSE |only src/include/LightGBM/c_api.h | 4 src/include/NOTICE.txt |only src/include/constrained |only src/include/line_search |only src/include/misc |only src/include/optim.hpp |only src/include/unconstrained |only src/include/zeros |only src/metric/binary_metric.hpp | 15 src/metric/random_effects_metric.hpp | 9 src/metric/regression_metric.hpp | 2 src/re_model.cpp | 125 - src/sparse_matrix_utils.cpp | 48 tests/testthat/test_GPBoost_algorithm.R | 168 + tests/testthat/test_GPBoost_algorithm_non_Gaussian_data.R | 590 ++++-- tests/testthat/test_GPModel_gaussian_process.R | 234 ++ tests/testthat/test_GPModel_grouped_random_effects.R | 39 tests/testthat/test_GPModel_non_Gaussian_data.R | 147 + tests/testthat/test_dataset.R | 2 58 files changed, 3104 insertions(+), 1449 deletions(-)
Title: Methods for Causal Inference with Interference
Description: Provides methods for estimating causal effects in the presence of interference described in B. Saul and M. Hugdens (2017) <doi:10.18637/jss.v082.i02>. Currently it implements the inverse-probability weighted (IPW) estimators proposed by E.J. Tchetgen Tchetgen and T.J. Vanderweele (2012) <doi:10.1177/0962280210386779>.
Author: Bradley Saul
Maintainer: Bradley Saul <bradleysaul@gmail.com>
Diff between inferference versions 1.0.0 dated 2017-11-24 and 1.0.2 dated 2021-04-21
DESCRIPTION | 13 - MD5 | 35 +-- R/datasets.R | 6 R/inferference.R | 6 R/interference.R | 4 build/partial.rdb |only build/vignette.rds |binary inst/doc/inferference_intro.R | 38 +-- inst/doc/inferference_intro.html | 446 +++++++++++++++++++++++---------------- inst/doc/inferference_plots.R | 10 inst/doc/inferference_plots.html | 228 ++++++++++++------- man/indirect_effect.Rd | 2 man/inferference.Rd | 7 man/interference.Rd | 25 +- man/vaccinesim.Rd | 8 man/voters.Rd | 10 man/wght_deriv_array.Rd | 13 - man/wght_deriv_calc.Rd | 9 man/wght_matrix.Rd | 13 - 19 files changed, 531 insertions(+), 342 deletions(-)
Title: Hazard Function Estimation in Survival Analysis
Description: Produces a smooth estimate of the hazard
function for censored data.
Author: S original by Kenneth Hess,
R port by R. Gentleman
Maintainer: David Winsemius <dwinsemius@comcast.net>
Diff between muhaz versions 1.2.6.3 dated 2021-04-01 and 1.2.6.4 dated 2021-04-21
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/init.c | 3 +-- 3 files changed, 6 insertions(+), 7 deletions(-)
Title: Vis-NIR Spectral Analysis Wrapper
Description: Originally designed application in the context of resource-limited plant research
and breeding programs, 'waves' provides an open-source solution to spectral data processing
and model development by bringing useful packages together into a streamlined pipeline.
This package is wrapper for functions related to the analysis of point visible and
near-infrared reflectance measurements. It includes visualization, filtering, aggregation,
preprocessing, cross-validation set formation, model training, and prediction functions to
enable open-source association of spectral and reference data. This package is documented
in a peer-reviewed manuscript in the Plant Phenome Journal <doi:10.1002/ppj2.20012>.
Specialized cross-validation schemes are described in detail in Jarquín et al. (2017)
<doi:10.3835/plantgenome2016.12.0130>. Example data is from Ikeogu et al. (2017)
<doi:10.1371/journal.pone.0188918>.
Author: Jenna Hershberger [aut, cre] (<https://orcid.org/0000-0002-3147-6867>),
Michael Gore [ths],
NSF BREAD IOS-1543958 [fnd]
Maintainer: Jenna Hershberger <jmh579@cornell.edu>
Diff between waves versions 0.1.0 dated 2020-09-17 and 0.1.1 dated 2021-04-21
DESCRIPTION | 11 ++++---- LICENSE | 2 - MD5 | 37 ++++++++++++++--------------- NAMESPACE | 2 + NEWS.md | 8 ++++++ R/FilterSpectra.R | 10 +++---- R/PlotSpectra.R | 8 ++++-- R/TestModelPerformance.R | 42 +++++++++++++++++++++++++-------- R/TrainSpectralModel.R | 21 ++++++++++------ README.md | 19 +++++++++++--- inst/CITATION | 24 +++++++----------- man/DoPreprocessing.Rd | 8 ++++-- man/FormatCV.Rd | 10 ++++++- man/PlotSpectra.Rd | 9 +++++-- man/PredictFromSavedModel.Rd | 9 +++++-- man/SaveModel.Rd | 26 ++++++++++++++------ man/TestModelPerformance.Rd | 24 ++++++++++++++---- man/TrainSpectralModel.Rd | 24 ++++++++++++++---- man/figures/testplot_all_R2_hlines.png |only man/ikeogu.2017.Rd | 4 ++- 20 files changed, 201 insertions(+), 97 deletions(-)
Title: Tidy Model Visualisation for Generalised Additive Models
Description: Provides functions for visualising generalised
additive models and getting predicted values using tidy tools from the 'tidyverse' packages.
Author: Stefano Coretta [aut, cre],
Jacolien van Rij [cph] (Imported functions from itsadug),
Martijn Wieling [cph] (Imported functions from itsadug)
Maintainer: Stefano Coretta <stefano.coretta@gmail.com>
Diff between tidymv versions 3.2.0 dated 2021-01-05 and 3.2.1 dated 2021-04-21
DESCRIPTION | 8 ++++---- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 17 +++++++++++++++++ R/plotting.R | 12 ++++++++---- R/utils.R | 28 ++++++++++++++++++++++++---- README.md | 2 +- build/vignette.rds |binary inst/doc/plot-smooths.R | 19 ++++++++++++++++++- inst/doc/plot-smooths.Rmd | 23 ++++++++++++++++++++++- inst/doc/plot-smooths.html | 22 +++++++++++++++++++--- inst/doc/predict-gam.html | 4 ++-- man/get_gam_predictions.Rd | 7 +++++-- man/get_smooths_difference.Rd | 5 ++++- man/plot_difference.Rd | 8 +++++++- man/plot_smooths.Rd | 5 ++++- man/predict_gam.Rd | 2 +- vignettes/plot-smooths.Rmd | 23 ++++++++++++++++++++++- 17 files changed, 174 insertions(+), 43 deletions(-)
Title: Regression Spline Functions and Classes
Description: Constructs basis matrix of B-splines, M-splines,
I-splines, convex splines (C-splines), periodic M-splines,
natural cubic splines, generalized Bernstein polynomials,
and their integrals (except C-splines) and derivatives
of given order by close-form recursive formulas.
It also contains a C++ head-only library integrated with Rcpp.
See De Boor (1978) <doi:10.1002/zamm.19800600129>,
Ramsay (1988) <doi:10.1214/ss/1177012761>, and
Meyer (2008) <doi:10.1214/08-AOAS167>
for more information about the spline basis.
Author: Wenjie Wang [aut, cre] (<https://orcid.org/0000-0003-0363-3180>),
Jun Yan [aut] (<https://orcid.org/0000-0003-4401-7296>)
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between splines2 versions 0.4.2 dated 2021-02-21 and 0.4.3 dated 2021-04-21
DESCRIPTION | 7 MD5 | 80 ++++-- NEWS.md | 17 + R/splines2-package.R | 2 README.md | 113 +++++---- build/vignette.rds |binary inst/CITATION | 2 inst/bib/splines2.bib | 4 inst/doc/splines2-intro.R | 8 inst/doc/splines2-intro.Rmd | 12 - inst/doc/splines2-intro.html | 37 +-- inst/doc/splines2-wi-rcpp.Rmd | 245 +++++++++++++-------- inst/doc/splines2-wi-rcpp.html | 241 +++++++++++--------- inst/examples/ex-deriv.R | 33 +- inst/include/splines2Armadillo/BSpline.h | 210 ++++++++++++------ inst/include/splines2Armadillo/BernsteinPoly.h | 72 +++--- inst/include/splines2Armadillo/CSpline.h | 33 +- inst/include/splines2Armadillo/ISpline.h | 80 ++++-- inst/include/splines2Armadillo/MSpline.h | 221 ++++++++++++------- inst/include/splines2Armadillo/NaturalSpline.h | 67 +++-- inst/include/splines2Armadillo/PeriodicMSpline.h | 264 ++++------------------- inst/include/splines2Armadillo/SplineBase.h | 230 ++++++++++++-------- inst/include/splines2Armadillo/utils.h | 24 +- inst/rcpp-tests |only inst/tinytest/test-bSpline.R | 4 inst/tinytest/test-cSpline.R | 4 inst/tinytest/test-dbs.R | 4 inst/tinytest/test-iSpline.R | 4 inst/tinytest/test-ibs.R | 4 inst/tinytest/test-mSpline.R | 4 man/deriv.Rd | 33 +- man/splines2.Rd | 2 tests/tinytest.R | 9 vignettes/splines2-intro.Rmd | 12 - vignettes/splines2-wi-rcpp.Rmd | 245 +++++++++++++-------- 35 files changed, 1311 insertions(+), 1016 deletions(-)
Title: A Wrapper for the Phonetic Software 'Praat'
Description: It allows running 'Praat' scripts from R and it provides some
wrappers for basic plotting. It also adds support for literate markdown
tangling. The package is designed to bring reproducible phonetic research
into R.
Author: Stefano Coretta [aut, cre]
Maintainer: Stefano Coretta <stefano.coretta@gmail.com>
Diff between speakr versions 3.1.0 dated 2021-04-19 and 3.1.1 dated 2021-04-21
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 3 +++ NEWS.md | 9 +++++++++ R/paths.R | 4 +++- R/speakr-package.R | 6 ++++++ R/zzz.R | 17 ++++++++++++++--- inst/doc/praat-plot.R | 2 -- inst/doc/praat-plot.Rmd | 2 -- inst/doc/run-praat.R | 4 +++- inst/doc/run-praat.Rmd | 4 +++- inst/doc/run-praat.html | 4 ++-- man/praat_path.Rd | 2 +- vignettes/praat-plot.Rmd | 2 -- vignettes/run-praat.Rmd | 4 +++- 15 files changed, 66 insertions(+), 35 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.6.3.1 dated 2021-04-20 and 0.6.3.2 dated 2021-04-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Boost.R | 2 +- R/Stack.R | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Bayesian Meta-Analysis and Network Meta-Analysis
Description: Contains functions performing Bayesian inference for meta-analytic and network meta-analytic models through Markov chain Monte Carlo algorithm. Currently, the package implements Hui Yao, Sungduk Kim, Ming-Hui Chen, Joseph G. Ibrahim, Arvind K. Shah, and Jianxin Lin (2015) <doi:10.1080/01621459.2015.1006065> and Hao Li, Daeyoung Lim, Ming-Hui Chen, Joseph G. Ibrahim, Sungduk Kim, Arvind K. Shah, Jianxin Lin (2021) <doi:10.1002/sim.8983>. For maximal computational efficiency, the Markov chain Monte Carlo samplers for each model, written in C++, are fine-tuned. This software has been developed under the auspices of the National Institutes of Health and Merck & Co., Inc., Kenilworth, NJ, USA.
Author: Daeyoung Lim [aut, cre],
Ming-Hui Chen [ctb],
Sungduk Kim [ctb],
Joseph Ibrahim [ctb],
Arvind Shah [ctb],
Jianxin Lin [ctb]
Maintainer: Daeyoung Lim <daeyoung.lim@uconn.edu>
Diff between metapack versions 0.1.1 dated 2021-02-23 and 0.1.2 dated 2021-04-21
metapack-0.1.1/metapack/src/ListBuilder.h |only metapack-0.1.2/metapack/DESCRIPTION | 10 metapack-0.1.2/metapack/MD5 | 45 +-- metapack-0.1.2/metapack/NEWS.md | 4 metapack-0.1.2/metapack/R/RcppExports.R | 182 +++++++--------- metapack-0.1.2/metapack/R/bayes.parobs.R | 4 metapack-0.1.2/metapack/README.md | 6 metapack-0.1.2/metapack/inst/doc/intro-to-metapack.Rmd | 2 metapack-0.1.2/metapack/inst/doc/intro-to-metapack.html | 6 metapack-0.1.2/metapack/man/bayes.parobs.Rd | 4 metapack-0.1.2/metapack/src/BayesNMR.cpp | 34 +- metapack-0.1.2/metapack/src/RcppExports.cpp | 25 -- metapack-0.1.2/metapack/src/fmodel1.cpp | 12 - metapack-0.1.2/metapack/src/fmodel1p.cpp | 12 - metapack-0.1.2/metapack/src/fmodel2.cpp | 18 - metapack-0.1.2/metapack/src/fmodel2p.cpp | 18 - metapack-0.1.2/metapack/src/fmodel2p5.cpp | 18 - metapack-0.1.2/metapack/src/fmodel2p5p.cpp | 18 - metapack-0.1.2/metapack/src/fmodel3.cpp | 26 +- metapack-0.1.2/metapack/src/fmodel3pp.cpp | 27 +- metapack-0.1.2/metapack/src/fmodel4.cpp | 28 +- metapack-0.1.2/metapack/src/fmodel4p.cpp | 28 +- metapack-0.1.2/metapack/src/linearalgebra.cpp | 4 metapack-0.1.2/metapack/vignettes/intro-to-metapack.Rmd | 2 24 files changed, 252 insertions(+), 281 deletions(-)
Title: Genetic Analysis Package
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, probability of
familial disease aggregation, kinship calculation, statistics
in linkage analysis, and association analysis involving genetic
markers including haplotype analysis with or without environmental
covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.2.2 dated 2020-02-02 and 1.2.3-1 dated 2021-04-21
ChangeLog | 28 +++ DESCRIPTION | 20 +- INDEX | 15 + MD5 | 57 +++--- NAMESPACE | 14 - R/ESplot.R | 35 +-- R/METAL_forestplot.R | 31 +-- R/mhtplot.trunc.R | 158 ++++++++--------- R/utils.R | 324 ++++++++++++++++++++++++++++++------ build/vignette.rds |binary data/datalist | 1 data/mr.rda |only inst/CITATION | 4 inst/doc/gap.R | 72 +++++--- inst/doc/gap.Rnw | 88 ++++++--- inst/doc/gap.pdf |binary inst/doc/jss.pdf |binary man/ESplot.Rd | 17 + man/MCMCgrm.Rd | 30 +++ man/METAL_forestplot.Rd | 11 + man/asplot.Rd | 1 man/gap-internal.Rd | 67 +++++-- man/gap-package.Rd | 34 ++- man/hwe.cc.Rd | 2 man/mhtplot.trunc.Rd | 67 ++++--- vignettes/figures/ESplot.pdf |binary vignettes/figures/INF1_CAD-FEV1.pdf |only vignettes/figures/lukas.pdf |binary vignettes/figures/miamiplot.png |only vignettes/figures/qqunif.pdf |binary vignettes/gap.Rnw | 88 ++++++--- 31 files changed, 805 insertions(+), 359 deletions(-)
Title: Randomized Response Techniques for Complex Surveys
Description: Point and interval estimation of linear parameters with data
obtained from complex surveys (including stratified and clustered samples)
when randomization techniques are used. The randomized response technique
was developed to obtain estimates that are more valid when studying
sensitive topics. Estimators and variances for 14 randomized response
methods for qualitative variables and 7 randomized response methods for
quantitative variables are also implemented. In addition, some data sets
from surveys with these randomization methods are included in the package.
Author: Beatriz Cobo Rodríguez, María del Mar Rueda García, Antonio Arcos
Cebrián
Maintainer: Beatriz Cobo Rodríguez <beacr@ugr.es>
Diff between RRTCS versions 0.0.3 dated 2015-11-03 and 0.0.4 dated 2021-04-21
DESCRIPTION | 10 +-- MD5 | 100 ++++++++++++++++++------------------ R/BarLevData.R | 2 R/ChaudhuriChristofidesData.R | 2 R/ChaudhuriChristofidesDatapij.R | 2 R/ChristofidesData.R | 2 R/DevoreData.R | 2 R/DianaPerri1Data.R | 2 R/DianaPerri2Data.R | 2 R/EichhornHayreData.R | 2 R/ErikssonData.R | 2 R/ForcedResponseData.R | 2 R/ForcedResponseDataSt.R | 2 R/HorvitzData.R | 2 R/HorvitzDataRealSurvey.R | 2 R/HorvitzDataStCl.R | 2 R/HorvitzUBData.R | 2 R/KukData.R | 2 R/MangatSinghData.R | 2 R/MangatSinghSinghData.R | 2 R/MangatSinghSinghUBData.R | 2 R/SahaData.R | 2 R/SinghJoarderData.R | 2 R/SoberanisCruzData.R | 2 R/WarnerData.R | 2 build/vignette.rds |binary inst/doc/my-vignette.R | 2 inst/doc/my-vignette.pdf |binary man/BarLevData.Rd | 2 man/ChaudhuriChristofidesData.Rd | 2 man/ChaudhuriChristofidesDatapij.Rd | 2 man/ChristofidesData.Rd | 2 man/DevoreData.Rd | 2 man/DianaPerri1Data.Rd | 2 man/DianaPerri2Data.Rd | 2 man/EichhornHayreData.Rd | 2 man/ErikssonData.Rd | 2 man/ForcedResponseData.Rd | 2 man/ForcedResponseDataSt.Rd | 2 man/HorvitzData.Rd | 2 man/HorvitzDataRealSurvey.Rd | 2 man/HorvitzDataStCl.Rd | 2 man/HorvitzUBData.Rd | 2 man/KukData.Rd | 2 man/MangatSinghData.Rd | 2 man/MangatSinghSinghData.Rd | 2 man/MangatSinghSinghUBData.Rd | 2 man/SahaData.Rd | 2 man/SinghJoarderData.Rd | 2 man/SoberanisCruzData.Rd | 2 man/WarnerData.Rd | 2 51 files changed, 102 insertions(+), 102 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-03 1.1
2017-01-17 1.0-7
2015-12-18 1.0-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-19 1.0.1
More information about ccoptimalmatch at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-06 0.5
2021-01-25 0.4
2020-11-17 0.3
2020-11-16 0.2
Title: Connecting R and 'Raven' Sound Analysis Software
Description: A tool to exchange data between R and 'Raven' sound analysis software (Cornell Lab of Ornithology). Functions work on data formats compatible with the R package 'warbleR'.
Author: Marcelo Araya-Salas [aut, cre]
(<https://orcid.org/0000-0003-3594-619X>)
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between Rraven versions 1.0.12 dated 2021-03-09 and 1.0.13 dated 2021-04-21
DESCRIPTION | 10 ++++----- MD5 | 20 +++++++++--------- NEWS.md | 4 +++ R/exp_empty_sels.R | 2 - R/exp_raven.R | 8 ++++--- R/raven_batch_detec.R | 2 - R/run_raven.R | 8 +++---- inst/doc/Rraven.Rmd | 13 +++++++----- inst/doc/Rraven.html | 54 +++++--------------------------------------------- man/exp_empty_sels.Rd | 2 - vignettes/Rraven.Rmd | 13 +++++++----- 11 files changed, 53 insertions(+), 83 deletions(-)
Title: Number and Brightness Image Analysis
Description: Calculation of molecular number and brightness from
fluorescence microscopy image series. The software was published in a
2016 paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for
the technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>.
A review of the technique was published in 2017
<doi:10.1016/j.ymeth.2017.12.001>.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb, cph] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths, cph]
(<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between nandb versions 2.0.7 dated 2020-05-08 and 2.0.8 dated 2021-04-21
DESCRIPTION | 23 +++---- MD5 | 50 ++++++++-------- NEWS.md | 10 ++- README.md | 7 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/batch-mode.html | 23 ++++++- inst/doc/brightness-timeseries.html | 14 ++++ inst/doc/single-images.html | 99 +++++++++++++++++---------------- man/brightness.Rd | 2 man/brightness_folder.Rd | 2 man/brightness_timeseries.Rd | 2 man/brightness_timeseries_folder.Rd | 2 man/cc_brightness.Rd | 2 man/cc_brightness_folder.Rd | 2 man/cc_brightness_timeseries.Rd | 2 man/cc_brightness_timeseries_folder.Rd | 2 man/cc_number.Rd | 2 man/cc_number_folder.Rd | 2 man/cc_number_timeseries.Rd | 2 man/cc_number_timeseries_folder.Rd | 2 man/matrix_raster_plot.Rd | 8 +- man/number.Rd | 2 man/number_folder.Rd | 2 man/number_timeseries.Rd | 2 man/number_timeseries_folder.Rd | 2 26 files changed, 151 insertions(+), 115 deletions(-)
Title: Detrend Images
Description: Detrend fluorescence microscopy image series for
fluorescence fluctuation and correlation spectroscopy ('FCS' and
'FFS') analysis. This package contains functionality published in a
2016 paper <doi:10.1093/bioinformatics/btx434> but it has been
extended since then with the Robin Hood algorithm and thus contains
unpublished work.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb, cph] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths, cph]
(<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between detrendr versions 0.6.12 dated 2021-02-08 and 0.6.13 dated 2021-04-21
DESCRIPTION | 7 +++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ README.md | 1 - inst/doc/batch-mode.html | 13 ++++++++++--- inst/doc/linescan-data.html | 9 ++++++++- inst/doc/single-images.html | 23 +++++++++++++++-------- 7 files changed, 48 insertions(+), 23 deletions(-)
Title: Quantifying Habitat-Induced Acoustic Signal Degradation
Description: Intended to facilitate acoustic analysis of (animal) sound transmission experiments, which typically aim to quantify changes in signal structure when transmitted in a given habitat by broadcasting and re-recording animal sounds at increasing distances. The package offers a workflow with functions to prepare the data set for analysis as well as to calculate and visualize several degradation metrics, including blur ratio, signal-to-noise ratio, excess attenuation and envelope correlation among others (Dabelsteen et al 1993 <doi:10.1121/1.406682>).
Author: Marcelo Araya-Salas [aut, cre]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between baRulho versions 1.0.4 dated 2021-03-09 and 1.0.5 dated 2021-04-21
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ R/master_sound_file.R | 17 +++++++++++------ R/search_templates.R | 2 +- inst/doc/baRulho_quantifying_sound_degradation.html | 8 ++++---- 6 files changed, 34 insertions(+), 21 deletions(-)
Title: Badge for R Package
Description: Query information and generate badge for using in README and GitHub Pages.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
Gregor de Cillia [ctb],
Dirk Eddelbuettel [ctb],
Maëlle Salmon [ctb],
Robrecht Cannoodt [ctb] (<https://orcid.org/0000-0003-3641-729X>,
rcannood),
Alexander Rossell Hayes [ctb] (<https://orcid.org/0000-0001-9412-0457>,
rossellhayes)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between badger versions 0.0.9 dated 2020-12-05 and 0.1.0 dated 2021-04-21
DESCRIPTION | 9 +++---- MD5 | 16 ++++++------ R/badge.R | 60 ++++++++++++++++++++++++++++++----------------- R/utilities.R | 5 +++ man/badge_codecov.Rd | 7 +++-- man/badge_coveralls.Rd | 5 +++ man/badge_last_commit.Rd | 5 +++ man/badge_lifecycle.Rd | 3 +- man/badge_travis.Rd | 9 ++++--- 9 files changed, 77 insertions(+), 42 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-17 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-20 2019.8.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-20 0.1.2
2020-05-09 0.1.1
2020-03-25 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-03 1.0.1
2016-01-01 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-26 0.1.1
2020-11-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-07 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-14 1.1.4
2016-04-01 1.1.3
2015-11-30 1.1.2
2015-08-06 1.1.1
2015-07-27 1.1
2015-07-10 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-07 3.0.1
2020-10-13 2.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-29 2019.8.27
2019-06-24 2019.6.24
2019-05-21 2019.5.19
2019-04-04 2019.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-14 0.3.8
2021-03-08 0.3.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-26 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-06 0.2.1
2020-11-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-20 1.1.1
2019-12-16 1.1
2018-12-17 1.0.2
2018-12-13 1.0.1
2018-12-11 1.0.0
2018-11-27 0.2.1
2018-07-05 0.1.1
Title: Time Value of Money Functions
Description: Functions for managing cashflows and interest rate curves.
Author: Juan Manuel Truppia
Maintainer: Juan Manuel Truppia <jmtruppia@gmail.com>
Diff between tvm versions 0.4.0 dated 2019-03-06 and 0.5.0 dated 2021-04-21
DESCRIPTION | 12 LICENSE | 2 MD5 | 68 +- NAMESPACE | 56 +- NEWS.md | 24 R/CfFuncs.R | 496 ++++++++++---------- R/CurveFuncs.R | 468 +++++++++---------- R/tvm-package.R | 16 README.md | 92 +-- build/vignette.rds |binary inst/doc/intro.R | 38 - inst/doc/intro.Rmd | 150 +++--- inst/doc/intro.html | 971 ++++++++++++++++------------------------ man/adjust_disc.Rd | 38 - man/cashflow.Rd | 36 - man/cft.Rd | 60 +- man/disc_cf.Rd | 38 - man/disc_value.Rd | 54 +- man/find_rate.Rd | 54 +- man/irr.Rd | 47 - man/loan.Rd | 54 +- man/npv.Rd | 48 - man/plot.rate_curve.Rd | 56 +- man/pmt.Rd | 48 - man/rate.Rd | 56 +- man/rate_curve.Rd | 100 ++-- man/rem.Rd | 42 - man/sub-.rate_curve.Rd | 54 +- man/tvm.Rd | 19 man/xirr.Rd | 54 +- man/xnpv.Rd | 50 +- tests/test-all.R | 2 tests/testthat/test_cashflows.R | 32 - tests/testthat/test_curves.R | 90 +-- vignettes/intro.Rmd | 150 +++--- 35 files changed, 1719 insertions(+), 1856 deletions(-)
Title: Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays
Description: Renders vector-based svg images into high-quality custom-size bitmap
arrays using 'librsvg2'. The resulting bitmap can be written to e.g. png, jpeg
or webp format. In addition, the package can convert images directly to various
formats such as pdf or postscript.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between rsvg versions 2.1 dated 2020-05-19 and 2.1.1 dated 2021-04-21
DESCRIPTION | 10 - MD5 | 16 +- build/vignette.rds |binary cleanup | 2 configure | 26 ++-- inst/doc/svg-css.R | 3 inst/doc/svg-css.Rmd | 3 inst/doc/svg-css.html | 273 ++++++++------------------------------------------ vignettes/svg-css.Rmd | 3 9 files changed, 79 insertions(+), 257 deletions(-)
Title: Interface to 'Python'
Description: Interface to 'Python' modules, classes, and functions. When calling
into 'Python', R data types are automatically converted to their equivalent 'Python'
types. When values are returned from 'Python' to R they are converted back to R
types. Compatible with all versions of 'Python' >= 2.7.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
RStudio [cph, fnd],
Yuan Tang [aut, cph] (<https://orcid.org/0000-0001-5243-233X>),
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Sigrid Keydana [ctb],
Ryan Hafen [ctb, cph],
Marcus Geelnard [ctb, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/)
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between reticulate versions 1.18 dated 2020-10-25 and 1.19 dated 2021-04-21
reticulate-1.18/reticulate/inst/python/rpytools/__init__.pyc |only reticulate-1.18/reticulate/inst/python/rpytools/__pycache__ |only reticulate-1.18/reticulate/inst/python/rpytools/call.pyc |only reticulate-1.18/reticulate/inst/python/rpytools/output.pyc |only reticulate-1.18/reticulate/tests/testthat/resources/eng-reticulate-example.html |only reticulate-1.18/reticulate/tests/testthat/resources/eng-reticulate-example_files |only reticulate-1.19/reticulate/DESCRIPTION | 11 reticulate-1.19/reticulate/MD5 | 174 - reticulate-1.19/reticulate/NAMESPACE | 8 reticulate-1.19/reticulate/NEWS.md | 72 reticulate-1.19/reticulate/R/RcppExports.R | 16 reticulate-1.19/reticulate/R/case.R |only reticulate-1.19/reticulate/R/class.R | 59 reticulate-1.19/reticulate/R/conda.R | 64 reticulate-1.19/reticulate/R/config.R | 93 reticulate-1.19/reticulate/R/conversion.R | 24 reticulate-1.19/reticulate/R/generator.R | 2 reticulate-1.19/reticulate/R/imports.R | 2 reticulate-1.19/reticulate/R/install-python.R |only reticulate-1.19/reticulate/R/knitr-engine.R | 378 +++ reticulate-1.19/reticulate/R/package.R | 162 + reticulate-1.19/reticulate/R/py_func.R | 2 reticulate-1.19/reticulate/R/pyenv.R |only reticulate-1.19/reticulate/R/python-packages.R | 7 reticulate-1.19/reticulate/R/python-tools.R | 29 reticulate-1.19/reticulate/R/python.R | 146 + reticulate-1.19/reticulate/R/repl.R | 68 reticulate-1.19/reticulate/R/testthat-helpers.R |only reticulate-1.19/reticulate/R/use_python.R | 78 reticulate-1.19/reticulate/R/utils.R | 85 reticulate-1.19/reticulate/R/virtualenv.R | 98 - 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Title: Luck-Corrected Peer Performance Analysis in R
Description: Provides functions to perform the peer performance
analysis of funds' returns as described in Ardia and Boudt (2018) <doi:10.1016/j.jbankfin.2017.10.014>.
Author: David Ardia [aut, cre] (<https://orcid.org/0000-0003-2823-782X>),
Kris Boudt [aut],
Nabil Bouamara [ctb]
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between PeerPerformance versions 2.2.2 dated 2020-04-21 and 2.2.3 dated 2021-04-21
PeerPerformance-2.2.2/PeerPerformance/README.md |only PeerPerformance-2.2.3/PeerPerformance/DESCRIPTION | 10 PeerPerformance-2.2.3/PeerPerformance/MD5 | 29 PeerPerformance-2.2.3/PeerPerformance/NAMESPACE | 34 - PeerPerformance-2.2.3/PeerPerformance/NEWS | 8 PeerPerformance-2.2.3/PeerPerformance/build/partial.rdb |binary PeerPerformance-2.2.3/PeerPerformance/inst/COPYRIGHTS | 2 PeerPerformance-2.2.3/PeerPerformance/man/PeerPerformance.Rd | 170 ++--- PeerPerformance-2.2.3/PeerPerformance/man/alphaScreening.Rd | 314 +++++----- PeerPerformance-2.2.3/PeerPerformance/man/hfdata.Rd | 38 - PeerPerformance-2.2.3/PeerPerformance/man/msharpe.Rd | 144 ++-- PeerPerformance-2.2.3/PeerPerformance/man/msharpeScreening.Rd | 312 ++++----- PeerPerformance-2.2.3/PeerPerformance/man/msharpeTesting.Rd | 300 ++++----- PeerPerformance-2.2.3/PeerPerformance/man/sharpe.Rd | 120 +-- PeerPerformance-2.2.3/PeerPerformance/man/sharpeScreening.Rd | 314 +++++----- PeerPerformance-2.2.3/PeerPerformance/man/sharpeTesting.Rd | 266 ++++---- 16 files changed, 1029 insertions(+), 1032 deletions(-)
More information about PeerPerformance at CRAN
Permanent link
Title: Automated Spatial Prediction using Ensemble Machine Learning
Description: Functions and tools for spatial interpolation and/or prediction of environmental variables (points to grids)
based on using Ensemble Machine Learning with geographical distances. Package also provides access to Global
Environmental Layers (<https://www.OpenLandMap.org>) produced by the OpenGeoHub.org foundation and collaborators. Some functions have been migrated and adopted from the
Global Soil Information Facilities package.
Author: Tomislav Hengl [aut, cre]
Maintainer: Tomislav Hengl <tom.hengl@opengeohub.org>
Diff between landmap versions 0.0.7 dated 2021-01-29 and 0.0.9 dated 2021-04-21
DESCRIPTION | 15 +++--- MD5 | 14 ++--- R/spsample.prob.R | 8 +-- R/train.spLearner.R | 100 ++++++++++++++++++++++++++++++++++------- build/partial.rdb |binary man/edgeroi.Rd | 31 ++++++------ man/predict.spLearner.Rd | 10 +++- man/train.spLearner-methods.Rd | 50 +++++++++++++++++--- 8 files changed, 170 insertions(+), 58 deletions(-)
Title: Genetic Algorithms
Description: Flexible general-purpose toolbox implementing genetic algorithms (GAs) for stochastic optimisation. Binary, real-valued, and permutation representations are available to optimize a fitness function, i.e. a function provided by users depending on their objective function. Several genetic operators are available and can be combined to explore the best settings for the current task. Furthermore, users can define new genetic operators and easily evaluate their performances. Local search using general-purpose optimisation algorithms can be applied stochastically to exploit interesting regions. GAs can be run sequentially or in parallel, using an explicit master-slave parallelisation or a coarse-grain islands approach.
Author: Luca Scrucca [aut, cre] (<https://orcid.org/0000-0003-3826-0484>)
Maintainer: Luca Scrucca <luca.scrucca@unipg.it>
Diff between GA versions 3.2 dated 2019-01-10 and 3.2.1 dated 2021-04-21
GA-3.2.1/GA/DESCRIPTION | 13 GA-3.2.1/GA/MD5 | 42 GA-3.2.1/GA/NEWS.md | 8 GA-3.2.1/GA/R/ga.R | 34 GA-3.2.1/GA/R/gaIslands.R | 11 GA-3.2.1/GA/R/gade.R | 44 GA-3.2.1/GA/README.md | 4 GA-3.2.1/GA/build/vignette.rds |binary GA-3.2.1/GA/inst/CITATION | 8 GA-3.2.1/GA/inst/doc/GA.R | 104 +- GA-3.2.1/GA/inst/doc/GA.Rmd | 57 + GA-3.2.1/GA/inst/doc/GA.html | 1477 ++++++++++++++------------------ GA-3.2.1/GA/man/GA-package.Rd | 4 GA-3.2.1/GA/man/binary2decimal.Rd | 2 GA-3.2.1/GA/man/de.Rd | 26 GA-3.2.1/GA/man/ga.Rd | 6 GA-3.2.1/GA/man/gaisl.Rd | 4 GA-3.2.1/GA/man/palettes.Rd | 2 GA-3.2.1/GA/src/Makevars |only GA-3.2.1/GA/vignettes/GA.Rmd | 57 + GA-3.2.1/GA/vignettes/vignette.css | 39 GA-3.2.1/GA/vignettes/vignette_old1.css |only GA-3.2.1/GA/vignettes/vignette_old2.css |only GA-3.2/GA/vignettes/vignette2.css |only 24 files changed, 989 insertions(+), 953 deletions(-)
Title: Automatic Processing of TLS Point Cloud Data for Forestry
Purposes
Description: Process automation of Terrestrial Laser Scanner (TLS) point cloud data derived from single scans. 'FORTLS' enables (i) detection of trees and estimation of diameter at breast height (dbh), (ii) estimation of some stand variables (e.g. density, basal area, mean and dominant height), (iii) computation of metrics related to important forest attributes estimated in Forest Inventories (FIs) at stand level and (iv) optimization of plot design for combining TLS data and field measured data. Documentation about 'FORTLS' is described in Molina-Valero et al. (2020, <doi:10.3390/IECF2020-08066>).
Author: Juan Alberto Molina-Valero [aut, cph, cre],
María José Ginzo Villamayor [aut, com],
Manuel Antonio Novo Pérez [aut, com],
Adela Martínez-Calvo [aut, com],
Juan Gabriel Álvarez-González [aut, ths],
Fernando Montes [aut],
César Pérez-Cruzado [aut, ths]
Maintainer: Juan Alberto Molina-Valero <juanalberto.molina.valero@usc.es>
Diff between FORTLS versions 1.0.1 dated 2021-03-02 and 1.0.2 dated 2021-04-21
DESCRIPTION | 8 MD5 | 35 ++- R/auxiliary.functions.R | 2 R/distance.sampling.R | 154 ++++++++--------- R/estimation.plot.size.R | 139 +++++++-------- R/metrics.variables.R | 106 +++++++---- R/normalize.R | 94 ++++++++-- R/simulations.R | 93 ++++++---- R/tree.detection.R | 366 +++++++++++++++++++++-------------------- R/tree.detection.multiple.R | 146 +++++++++++----- README.md |only build/partial.rdb |binary data/Rioja.data.RData |binary man/Rioja.data.Rd | 6 man/metrics.variables.Rd | 71 ++++--- man/normalize.Rd | 16 + man/simulations.Rd | 74 ++++---- man/tree.detection.Rd | 6 man/tree.detection.multiple.Rd | 20 +- 19 files changed, 778 insertions(+), 558 deletions(-)
Title: Shed Light on Black Box Machine Learning Models
Description: Shed light on black box machine learning models by the help
of model performance, variable importance, global surrogate models,
ICE profiles, partial dependence (Friedman J. H. (2001)
<doi:10.1214/aos/1013203451>), accumulated local effects (Apley D. W.
(2016) <arXiv:1612.08468>), further effects plots, scatter plots,
interaction strength, and variable contribution breakdown (approximate
SHAP) for single observations (Gosiewska and Biecek (2019)
<arxiv:1903.11420>). All tools are implemented to work with case
weights and allow for stratified analysis. Furthermore, multiple
flashlights can be combined and analyzed together.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between flashlight versions 0.7.5 dated 2021-02-13 and 0.8.0 dated 2021-04-21
flashlight-0.7.5/flashlight/R/midpoints.R |only flashlight-0.7.5/flashlight/man/midpoints.Rd |only flashlight-0.8.0/flashlight/DESCRIPTION | 24 flashlight-0.8.0/flashlight/MD5 | 167 - flashlight-0.8.0/flashlight/NAMESPACE | 8 flashlight-0.8.0/flashlight/NEWS.md | 404 +- flashlight-0.8.0/flashlight/R/add_shap.R | 67 flashlight-0.8.0/flashlight/R/ale_profile.R | 98 flashlight-0.8.0/flashlight/R/auto_cut.R | 3 flashlight-0.8.0/flashlight/R/common_breaks.R | 13 flashlight-0.8.0/flashlight/R/flashlight.R | 12 flashlight-0.8.0/flashlight/R/grouped_center.R | 10 flashlight-0.8.0/flashlight/R/grouped_counts.R | 7 flashlight-0.8.0/flashlight/R/grouped_stats.R | 13 flashlight-0.8.0/flashlight/R/grouped_weighted_mean.R | 3 flashlight-0.8.0/flashlight/R/is_flashlight.R | 12 flashlight-0.8.0/flashlight/R/light_breakdown.R | 81 flashlight-0.8.0/flashlight/R/light_check.R | 2 flashlight-0.8.0/flashlight/R/light_combine.R | 14 flashlight-0.8.0/flashlight/R/light_effects.R | 107 flashlight-0.8.0/flashlight/R/light_global_surrogate.R | 56 flashlight-0.8.0/flashlight/R/light_ice.R | 93 flashlight-0.8.0/flashlight/R/light_importance.R | 85 flashlight-0.8.0/flashlight/R/light_interaction.R | 118 flashlight-0.8.0/flashlight/R/light_performance.R | 39 flashlight-0.8.0/flashlight/R/light_profile.R | 164 - flashlight-0.8.0/flashlight/R/light_profile2d.R |only flashlight-0.8.0/flashlight/R/light_recode.R | 12 flashlight-0.8.0/flashlight/R/light_scatter.R | 63 flashlight-0.8.0/flashlight/R/most_important.R | 17 flashlight-0.8.0/flashlight/R/multiflashlight.R | 23 flashlight-0.8.0/flashlight/R/plot_counts.R | 27 flashlight-0.8.0/flashlight/R/plot_light_breakdown.R | 30 flashlight-0.8.0/flashlight/R/plot_light_effects.R | 37 flashlight-0.8.0/flashlight/R/plot_light_global_surrogate.R | 9 flashlight-0.8.0/flashlight/R/plot_light_ice.R | 26 flashlight-0.8.0/flashlight/R/plot_light_importance.R | 50 flashlight-0.8.0/flashlight/R/plot_light_performance.R | 24 flashlight-0.8.0/flashlight/R/plot_light_profile.R | 27 flashlight-0.8.0/flashlight/R/plot_light_profile2d.R |only flashlight-0.8.0/flashlight/R/plot_light_scatter.R | 18 flashlight-0.8.0/flashlight/R/predict_flashlight.R | 14 flashlight-0.8.0/flashlight/R/print_light.R | 6 flashlight-0.8.0/flashlight/R/utils.R |only flashlight-0.8.0/flashlight/R/zzz.R |only flashlight-0.8.0/flashlight/README.md | 29 flashlight-0.8.0/flashlight/build/vignette.rds |binary flashlight-0.8.0/flashlight/inst/doc/caret.R | 4 flashlight-0.8.0/flashlight/inst/doc/caret.Rmd | 5 flashlight-0.8.0/flashlight/inst/doc/caret.html | 448 --- flashlight-0.8.0/flashlight/inst/doc/flashlight.R | 179 - flashlight-0.8.0/flashlight/inst/doc/flashlight.Rmd | 194 - flashlight-0.8.0/flashlight/inst/doc/flashlight.html | 1406 ++++------ flashlight-0.8.0/flashlight/inst/doc/mlr3.R | 4 flashlight-0.8.0/flashlight/inst/doc/mlr3.Rmd | 5 flashlight-0.8.0/flashlight/inst/doc/mlr3.html | 450 --- flashlight-0.8.0/flashlight/man/add_shap.Rd | 4 flashlight-0.8.0/flashlight/man/ale_profile.Rd | 11 flashlight-0.8.0/flashlight/man/common_breaks.Rd | 4 flashlight-0.8.0/flashlight/man/figures |only flashlight-0.8.0/flashlight/man/is.flashlight.Rd | 10 flashlight-0.8.0/flashlight/man/light_breakdown.Rd | 30 flashlight-0.8.0/flashlight/man/light_effects.Rd | 36 flashlight-0.8.0/flashlight/man/light_global_surrogate.Rd | 12 flashlight-0.8.0/flashlight/man/light_ice.Rd | 30 flashlight-0.8.0/flashlight/man/light_importance.Rd | 26 flashlight-0.8.0/flashlight/man/light_interaction.Rd | 32 flashlight-0.8.0/flashlight/man/light_performance.Rd | 16 flashlight-0.8.0/flashlight/man/light_profile.Rd | 41 flashlight-0.8.0/flashlight/man/light_profile2d.Rd |only flashlight-0.8.0/flashlight/man/light_recode.Rd | 2 flashlight-0.8.0/flashlight/man/light_scatter.Rd | 18 flashlight-0.8.0/flashlight/man/multiflashlight.Rd | 109 flashlight-0.8.0/flashlight/man/plot.light_ice.Rd | 4 flashlight-0.8.0/flashlight/man/plot.light_profile2d.Rd |only flashlight-0.8.0/flashlight/tests/testthat/tests-breakdown.R | 15 flashlight-0.8.0/flashlight/tests/testthat/tests-cut.R | 4 flashlight-0.8.0/flashlight/tests/testthat/tests-eff.R | 40 flashlight-0.8.0/flashlight/tests/testthat/tests-globaltree.R | 16 flashlight-0.8.0/flashlight/tests/testthat/tests-ice.R | 16 flashlight-0.8.0/flashlight/tests/testthat/tests-importance.R | 14 flashlight-0.8.0/flashlight/tests/testthat/tests-interaction.R | 17 flashlight-0.8.0/flashlight/tests/testthat/tests-methods.R | 17 flashlight-0.8.0/flashlight/tests/testthat/tests-perf.R | 16 flashlight-0.8.0/flashlight/tests/testthat/tests-profile2d.R |only flashlight-0.8.0/flashlight/tests/testthat/tests-shap.R | 6 flashlight-0.8.0/flashlight/tests/testthat/tests-utils.R |only flashlight-0.8.0/flashlight/vignettes/caret.Rmd | 5 flashlight-0.8.0/flashlight/vignettes/flashlight.Rmd | 194 - flashlight-0.8.0/flashlight/vignettes/mlr3.Rmd | 5 90 files changed, 2537 insertions(+), 2920 deletions(-)
Title: Adaptive Mixture of Student-t Distributions
Description: Provides functions to perform the fitting of an adaptive mixture
of Student-t distributions to a target density through its kernel function as described in
Ardia et al. (2009) <doi:10.18637/jss.v029.i03>. The
mixture approximation can then be used as the importance density in importance
sampling or as the candidate density in the Metropolis-Hastings algorithm to
obtain quantities of interest for the target density itself.
Author: David Ardia [aut, cre, cph] (<https://orcid.org/0000-0003-2823-782X>),
Lennart Hoogerheide [ctb],
Herman van Dijk [ctb]
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between AdMit versions 2.1.5 dated 2020-04-20 and 2.1.6 dated 2021-04-21
AdMit-2.1.5/AdMit/build/vignette.rds |only AdMit-2.1.5/AdMit/inst/doc |only AdMit-2.1.5/AdMit/vignettes |only AdMit-2.1.6/AdMit/COPYING | 680 +++++++++++++++---------------- AdMit-2.1.6/AdMit/DESCRIPTION | 8 AdMit-2.1.6/AdMit/MD5 | 31 - AdMit-2.1.6/AdMit/NAMESPACE | 3 AdMit-2.1.6/AdMit/NEWS | 4 AdMit-2.1.6/AdMit/README.md | 4 AdMit-2.1.6/AdMit/build/partial.rdb |binary AdMit-2.1.6/AdMit/inst/CITATION | 8 AdMit-2.1.6/AdMit/inst/COPYRIGHTS | 2 AdMit-2.1.6/AdMit/man/AdMit.Rd | 2 AdMit-2.1.6/AdMit/man/AdMitIS.Rd | 2 AdMit-2.1.6/AdMit/man/AdMitMH.Rd | 2 AdMit-2.1.6/AdMit/man/Mit.Rd | 2 AdMit-2.1.6/AdMit/src/packagename_init.c |only 17 files changed, 373 insertions(+), 375 deletions(-)