Title: Cybersecurity MITRE Standards Data and Digraphs
Description: Extract, transform and load MITRE standards.
This package gives you an approach to cybersecurity data sets.
All data sets are build on runtime downloading raw data from MITRE public services.
MITRE <https://www.mitre.org/> is a government-funded research organization
based in Bedford and McLean. Current version includes most used standards as
data frames. It also provide a list of nodes and edges with all relationships.
Author: Humbert Costas [aut, cre]
Maintainer: Humbert Costas <humbert.costas@gmail.com>
Diff between mitre versions 0.5.2 dated 2021-03-22 and 0.6.0 dated 2021-04-24
DESCRIPTION | 7 - MD5 | 32 ++++---- NAMESPACE | 1 NEWS.md | 5 + R/attck.R | 20 +++-- R/cpe.R | 126 +++++++++++++++++++++++++++++++++-- R/cti.R | 20 +++-- R/cwe.R | 9 +- R/mitre.R | 96 ++++++++++++++++++++++++-- README.md | 6 - build/vignette.rds |binary man/buildAttckTactics.Rd | 4 - man/getAttckData.Rd | 8 +- man/getCPEData.Rd | 11 ++- man/getCWEData.Rd | 4 - man/parseRawData.Rd | 10 -- tests/testthat/test-standard-attck.R | 2 17 files changed, 293 insertions(+), 68 deletions(-)
Title: Tools for Matrix Algebra, Optimization and Inference
Description: Matrix is an universal and sometimes primary object/unit in applied mathematics and statistics. We provide a number of algorithms for selected problems in optimization and statistical inference. For general exposition to the topic with focus on statistical context, see the book by Banerjee and Roy (2014, ISBN:9781420095388).
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyoustat@gmail.com>
Diff between maotai versions 0.1.8 dated 2020-10-31 and 0.1.9 dated 2021-04-24
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 4 +--- NEWS.md | 4 ++++ R/aux_hiddenR.R | 2 +- R/later_install_scipy.R | 3 ++- R/package-maotai.R | 3 +-- build/partial.rdb |binary src/cpp_bmds.cpp | 2 +- 9 files changed, 23 insertions(+), 21 deletions(-)
Title: Behavioral Scientists' Analysis Toolkit
Description: Miscellaneous functions to simplify and expedite
analyses of experimental data. Examples include a function
that plots sample means of groups in a factorial experimental design,
a function that conducts robust regressions with bootstrapped samples,
and a function that conducts robust two-way analysis of variance.
Many of the functions will require installing package(s) listed
in the Selected References.
Selected References:
Canty & Ripley (2021) <https://CRAN.R-project.org/package=boot>.
Cohen (1988) <doi:10.4324/9780203771587>.
DeCarlo (1997) <doi:10.1037/1082-989X.2.3.292>.
Dinno (2018) <https://CRAN.R-project.org/package=paran>.
Doane & Seward (2011) <doi:10.1080/10691898.2011.11889611>.
Dowle et al. (2021) <https://CRAN.R-project.org/package=data.table>.
Edwards et al. (2020) <https://CRAN.R-project.org/package=lemon>.
Fox et al. (2020) <https://CRAN.R-project.org/package=car>.
Hester et al. (2020) <https://CRAN.R-project.org/package=remotes>.
Ioannidis (2005) <doi:10.1371/journal.pmed.0020124>
Kim (2021) <doi:10.5281/zenodo.4445388>.
Kim (2020) <https://CRAN.R-project.org/package=ezr>.
Long (2020) <https://CRAN.R-project.org/package=interactions>.
Mair & Wilcox (2021) <https://CRAN.R-project.org/package=WRS2>.
Pasek et al. (2020) <https://CRAN.R-project.org/package=weights>.
Simmons et al. (2011) <doi:10.1177/0956797611417632>.
Tingley et al. (2019) <https://CRAN.R-project.org/package=mediation>.
Torchiano (2020) <https://CRAN.R-project.org/package=effsize>.
Wickham et al. (2020) <https://CRAN.R-project.org/package=ggplot2>.
Wilke (2021) <https://CRAN.R-project.org/package=ggridges>.
Author: Jin Kim [aut, cre] (<https://orcid.org/0000-0002-5013-3958>)
Maintainer: Jin Kim <jin.m.kim@yale.edu>
Diff between kim versions 0.2.172 dated 2021-03-28 and 0.3.13 dated 2021-04-24
DESCRIPTION | 21 +++-- MD5 | 113 ++++++++++++++++------------- NAMESPACE | 13 +-- NEWS.md | 27 ++++++- R/barplot_for_counts.R | 16 +++- R/change_var_names.R |only R/check_req_pkg.R |only R/cohen_d.R | 32 +++++++- R/cohen_d_from_cohen_textbook.R | 2 R/cum_percent_plot.R | 15 +++ R/desc_stats.R | 4 - R/desc_stats_by_group.R | 8 -- R/floodlight_2_by_continuous.R | 40 +++++++++- R/ggsave_quick.R | 14 +++ R/globals.R |only R/histogram.R | 22 +++++ R/histogram_by_group.R | 40 +++++++++- R/histogram_w_outlier_bins.R | 16 +++- R/install_all_dependencies.R |only R/kurtosis.R |only R/mann_whitney.R | 4 - R/mediation_analysis.R | 34 +++++++- R/multiple_regression.R | 38 ++++++++- R/onAttach.R | 6 - R/parallel_analysis.R | 38 ++++++++- R/plot_group_means.R | 15 +++ R/prep.R | 8 +- R/regex_match.R | 1 R/robust_regression.R | 28 ++++++- R/round_flexibly.R |only R/scatterplot.R | 51 +++++++++++-- R/score_scale_items.R | 11 +- R/setwd_to_active_doc.R | 2 R/skewness.R |only R/start_kim.R | 30 +++++-- R/su.R |only R/t_test_pairwise.R | 52 +++++++++---- R/theme_kim.R | 49 +++++++++++- R/two_way_anova.R | 83 +++++++++++++++++++-- R/update_kim.R | 146 ++++++++++++++++++++++---------------- R/wilcoxon_rank_sum_test.R | 4 - README.md | 5 + build/partial.rdb |binary inst/CITATION | 8 +- man/change_var_names.Rd |only man/check_req_pkg.Rd |only man/cohen_d.Rd | 10 ++ man/floodlight_2_by_continuous.Rd | 8 +- man/histogram.Rd | 4 + man/histogram_by_group.Rd | 8 +- man/install_all_dependencies.Rd |only man/kurtosis.Rd |only man/mediation_analysis.Rd | 7 + man/multiple_regression.Rd | 12 ++- man/parallel_analysis.Rd | 8 +- man/robust_regression.Rd | 8 +- man/round_flexibly.Rd |only man/scatterplot.Rd | 9 ++ man/skewness.Rd |only man/start_kim.Rd | 25 +++++- man/su.Rd |only man/t_test_pairwise.Rd | 8 +- man/theme_kim.Rd | 11 ++ man/two_way_anova.Rd | 14 +++ man/update_kim.Rd | 16 +++- 65 files changed, 888 insertions(+), 256 deletions(-)
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and technical writing (rtciles()).
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] (<https://orcid.org/0000-0002-0714-669X>)
Maintainer: Flavio Lozano-Isla <flavjack@gmail.com>
Diff between inti versions 0.2.0 dated 2021-04-14 and 0.3.0 dated 2021-04-24
inti-0.2.0/inti/R/info_figure.R |only inti-0.2.0/inti/R/info_table.R |only inti-0.2.0/inti/man/info_figure.Rd |only inti-0.2.0/inti/man/info_table.Rd |only inti-0.3.0/inti/DESCRIPTION | 14 inti-0.3.0/inti/MD5 | 100 - inti-0.3.0/inti/NAMESPACE | 2 inti-0.3.0/inti/NEWS.md | 19 inti-0.3.0/inti/R/fieldbook_design.R | 20 inti-0.3.0/inti/R/fieldbook_mvr.R | 36 inti-0.3.0/inti/R/fieldbook_report.R | 29 inti-0.3.0/inti/R/fieldbook_reshape.R | 28 inti-0.3.0/inti/R/fieldbook_summary.R | 27 inti-0.3.0/inti/R/fieldbook_varlist.R | 26 inti-0.3.0/inti/R/footnotes.R | 4 inti-0.3.0/inti/R/include_figure.R | 129 - inti-0.3.0/inti/R/include_table.R | 134 - inti-0.3.0/inti/R/jc_tombola.R | 34 inti-0.3.0/inti/R/mean_comparison.R | 71 inti-0.3.0/inti/R/metamorfosis.R | 32 inti-0.3.0/inti/R/plot_design.R | 33 inti-0.3.0/inti/R/plot_smr.R | 662 ++++---- inti-0.3.0/inti/R/web_table.R | 49 inti-0.3.0/inti/build/vignette.rds |binary inti-0.3.0/inti/inst/doc/apps.Rmd | 11 inti-0.3.0/inti/inst/doc/apps.html | 13 inti-0.3.0/inti/inst/doc/yupana.R |only inti-0.3.0/inti/inst/doc/yupana.Rmd |only inti-0.3.0/inti/inst/doc/yupana.html |only inti-0.3.0/inti/inst/rticles/rsconnect/shinyapps.io/flavjack/rticles.dcf | 5 inti-0.3.0/inti/inst/rticles/server.R | 12 inti-0.3.0/inti/inst/rticles/template/index.rmd | 796 +++++----- inti-0.3.0/inti/inst/rticles/www/bookdown.html | 40 inti-0.3.0/inti/inst/rticles/www/bookdown.rmd | 42 inti-0.3.0/inti/inst/yupana/rsconnect/shinyapps.io/flavjack/yupanapro.dcf | 5 inti-0.3.0/inti/inst/yupana/server.R | 8 inti-0.3.0/inti/inst/yupana/ui.R | 20 inti-0.3.0/inti/man/fieldbook_design.Rd | 21 inti-0.3.0/inti/man/fieldbook_mvr.Rd | 37 inti-0.3.0/inti/man/fieldbook_report.Rd | 29 inti-0.3.0/inti/man/fieldbook_reshape.Rd | 29 inti-0.3.0/inti/man/fieldbook_summary.Rd | 28 inti-0.3.0/inti/man/fieldbook_varlist.Rd | 27 inti-0.3.0/inti/man/include_figure.Rd | 29 inti-0.3.0/inti/man/include_table.Rd | 37 inti-0.3.0/inti/man/jc_tombola.Rd | 35 inti-0.3.0/inti/man/mean_comparison.Rd | 39 inti-0.3.0/inti/man/metamorphosis.Rd | 33 inti-0.3.0/inti/man/plot_design.Rd | 33 inti-0.3.0/inti/man/plot_smr.Rd | 78 inti-0.3.0/inti/man/web_table.Rd | 14 inti-0.3.0/inti/vignettes/apps.Rmd | 11 inti-0.3.0/inti/vignettes/files/graph-figure-grid.png |only inti-0.3.0/inti/vignettes/files/graph-figure.png |only inti-0.3.0/inti/vignettes/files/graph-table-grid.png |only inti-0.3.0/inti/vignettes/files/graph-table.png |only inti-0.3.0/inti/vignettes/yupana.Rmd |only 57 files changed, 1123 insertions(+), 1758 deletions(-)
Title: Shiny App. Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids (when not circular). Supports micrometers, cM and Mb or any unit. Three styles of centromeres are available: triangular, rounded and inProtein; and six styles of marks are available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow (downArrow), exProtein (inProtein); its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 2.0.3 dated 2021-04-13 and 2.0.4 dated 2021-04-24
DESCRIPTION | 8 MD5 | 80 - NEWS.md | 8 R/makedfMarkColor.R | 2 R/makedfMarkColorMycolors.R | 2 R/orientation.R | 10 R/plotIdiograms.R | 12 R/runBoard.R | 29 README.md | 16 inst/doc/index.R | 125 ++ inst/doc/index.Rmd | 341 ------ inst/doc/index.html | 28 inst/shinyApps/iBoard/obserNuccore.R | 51 inst/shinyApps/iBoard/obserPlot.R | 53 inst/shinyApps/iBoard/obserPresets.R | 23 inst/shinyApps/iBoard/outputNuccore.R | 65 - inst/shinyApps/iBoard/outputPanels.R | 543 +++++----- inst/shinyApps/iBoard/outputPlot.R | 42 inst/shinyApps/iBoard/outputTabs.R | 12 inst/shinyApps/iBoard/presetVals.R | 38 inst/shinyApps/iBoard/reactiveV.R | 5 inst/shinyApps/iBoard/server.R | 2 inst/shinyApps/iBoard/ui.R | 58 - inst/shinyApps/iBoard/www/DESCRIPTION | 4 inst/shinyApps/iBoard/www/man/figures/cranmanualbookdown.svg | 2 inst/shinyApps/iBoard/www/man/figures/cranversion.svg | 4 inst/shinyApps/iBoard/www/man/figures/develmanualvignette.svg | 2 inst/shinyApps/iBoard/www/man/figures/gitbadge.svg | 2 inst/shinyApps/iBoard/www/man/figures/pkgdownver.svg | 2 inst/shinyApps/iBoard/www/mystyle.css | 3 man/citrusSize.Rd | 128 +- man/figures/cranmanualbookdown.svg | 2 man/figures/cranversion.svg | 4 man/figures/develmanualvignette.svg | 2 man/figures/gitbadge.svg | 2 man/figures/manual.svg | 2 man/figures/pkgdownver.svg | 2 man/figures/shiny.jpg |binary man/namesToColumns.Rd | 21 man/plotIdiograms.Rd | 237 ---- vignettes/index.Rmd | 341 ------ 41 files changed, 981 insertions(+), 1332 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.5.5-1 dated 2021-03-21 and 1.6.0 dated 2021-04-24
DESCRIPTION | 8 +-- MD5 | 82 ++++++++++++++++++------------------- NEWS.md | 27 ++++++++++++ R/contrast.R | 11 +++- R/emm-list.R | 7 ++- R/emmGrid-methods.R | 16 +++++-- R/multinom-support.R | 2 R/nested.R | 6 ++ R/qdrg.R | 7 ++- R/ref-grid.R | 54 ++++++++++++++++++++---- R/summary.R | 50 +++++++++++++++++----- R/test.R | 4 + build/vignette.rds |binary inst/doc/FAQs.html | 10 ++-- inst/doc/basics.R | 16 +++++++ inst/doc/basics.Rmd | 33 ++++++++++++++ inst/doc/basics.html | 69 ++++++++++++++++++++++++++++--- inst/doc/comparisons.html | 10 ++-- inst/doc/confidence-intervals.html | 8 +-- inst/doc/interactions.html | 18 ++++---- inst/doc/messy-data.html | 4 - inst/doc/models.Rmd | 9 +--- inst/doc/models.html | 17 ++++--- inst/doc/predictions.html | 9 +--- inst/doc/sophisticated.html | 5 -- inst/doc/transformations.html | 4 - inst/doc/utilities.Rmd | 2 inst/doc/utilities.html | 6 +- inst/doc/vignette-topics.Rmd | 18 ++++++-- inst/doc/vignette-topics.html | 23 ++++++---- inst/doc/xplanations.html | 4 - inst/doc/xtending.html | 8 +-- man/emmGrid-methods.Rd | 10 ++++ man/emm_list-object.Rd | 6 ++ man/emm_options.Rd | 3 - man/ref_grid.Rd | 38 ++++++++++++++--- man/summary.emmGrid.Rd | 13 +++++ tests/testthat/test-ref_grid.R | 11 ++++ vignettes/basics.Rmd | 33 ++++++++++++++ vignettes/models.Rmd | 9 +--- vignettes/utilities.Rmd | 2 vignettes/vignette-topics.Rmd | 18 ++++++-- 42 files changed, 520 insertions(+), 170 deletions(-)
Title: Search and Retrieve Data from the BC Data Catalogue
Description: Search, query, and download tabular and
'geospatial' data from the British Columbia Data Catalogue
(<https://catalogue.data.gov.bc.ca/>). Search catalogue data records
based on keywords, data licence, sector, data format, and B.C.
government organization. View metadata directly in R, download many
data formats, and query 'geospatial' data available via the B.C.
government Web Feature Service ('WFS') using 'dplyr' syntax.
Author: Andy Teucher [aut, cre] (<https://orcid.org/0000-0002-7840-692X>),
Sam Albers [aut, ctb] (<https://orcid.org/0000-0002-9270-7884>),
Stephanie Hazlitt [aut, ctb] (<https://orcid.org/0000-0002-3161-2304>),
Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gov.bc.ca>
Diff between bcdata versions 0.2.2 dated 2021-03-12 and 0.2.3 dated 2021-04-24
DESCRIPTION | 18 MD5 | 186 - NAMESPACE | 195 - NEWS.md | 169 - R/bcdata-package.R | 40 R/bcdc-web-services.R | 490 ++-- R/bcdc_browse.R | 170 - R/bcdc_options.R | 227 +- R/bcdc_search.R | 704 +++--- R/cli.R |only R/cql-geom-predicates.R | 589 +++-- R/cql-translator.R | 396 +-- R/describe-feature.R | 269 +- R/get_data.R | 514 ++--- R/utils-as_tibble.R | 44 R/utils-classes.R | 1015 +++++----- R/utils-collect.R | 44 R/utils-filter.R | 44 R/utils-is.R | 68 R/utils-mutate.R | 44 R/utils-pipe.R | 44 R/utils-select.R | 44 R/utils-show-query.R | 44 R/utils.R | 818 ++++---- R/zzz.R | 44 README.md | 302 +- build/vignette.rds |binary inst/CITATION | 46 inst/doc/bcdata.Rmd | 860 ++++---- inst/doc/bcdata.html | 1007 ++++----- inst/doc/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd | 863 ++++---- inst/doc/efficiently-query-spatial-data-in-the-bc-data-catalogue.html | 973 ++++----- inst/doc/explore-silviculture-data-using-bcdata.Rmd | 604 ++--- inst/doc/explore-silviculture-data-using-bcdata.html | 769 +++---- man/CQL.Rd | 48 man/bcdata-package.Rd | 88 man/bcdc_browse.Rd | 138 - man/bcdc_check_geom_size.Rd |only man/bcdc_describe_feature.Rd | 93 man/bcdc_get_data.Rd | 214 +- man/bcdc_get_record.Rd | 88 man/bcdc_list.Rd | 42 man/bcdc_list_group_records.Rd | 56 man/bcdc_options.Rd | 119 - man/bcdc_preview.Rd | 80 man/bcdc_query_geodata.Rd | 180 - man/bcdc_read_functions.Rd | 28 man/bcdc_search.Rd | 108 - man/bcdc_search_facets.Rd | 58 man/bcdc_tidy_resources.Rd | 80 man/collect-methods.Rd | 82 man/cql_geom_predicates.Rd | 138 - man/filter.Rd | 94 man/mutate.Rd | 76 man/pipe.Rd | 24 man/select.Rd | 110 - man/show_query.Rd | 96 man/wfsConnection-class.Rd | 34 tests/testthat.R | 34 tests/testthat/helper-bcdata.R | 36 tests/testthat/setup.R | 52 tests/testthat/teardown.R | 26 tests/testthat/test-browse.R | 46 tests/testthat/test-cql-string.R | 194 - tests/testthat/test-describe-feature.R | 142 - tests/testthat/test-edge-cases.R | 34 tests/testthat/test-geom-operators.R | 292 +- tests/testthat/test-get-data.R | 342 +-- tests/testthat/test-get_record.R | 258 +- tests/testthat/test-options.R | 81 tests/testthat/test-print-methods.R | 114 - tests/testthat/test-query-geodata-collect.R | 208 +- tests/testthat/test-query-geodata-filter.R | 604 ++--- tests/testthat/test-query-geodata-head-tail.R | 120 - tests/testthat/test-query-geodata-mutate.R | 46 tests/testthat/test-query-geodata-select.R | 164 - tests/testthat/test-query-geodata.R | 136 - tests/testthat/test-search.R | 54 tests/testthat/test-utils.R | 116 - vignettes/bcdata.Rmd | 860 ++++---- vignettes/bcdata.Rmd.orig | 431 ++-- vignettes/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd | 863 ++++---- vignettes/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd.orig | 449 ++-- vignettes/explore-silviculture-data-using-bcdata.Rmd | 604 ++--- vignettes/explore-silviculture-data-using-bcdata.Rmd.orig | 445 ++-- vignettes/precompile.R | 102 - vignettes/vignette-fig-bbox-1.png |binary vignettes/vignette-fig-district_parks-1.png |binary vignettes/vignette-fig-districts-1.png |binary vignettes/vignette-fig-dp_join-1.png |binary vignettes/vignette-fig-map-larch-plantations-dpg-1.png |binary vignettes/vignette-fig-plot-dpg-1.png |binary vignettes/vignette-fig-regional_districts-1.png |binary vignettes/vignette-fig-unnamed-chunk-1-1.png |binary vignettes/vignette-fig-unnamed-chunk-3-1.png |binary 95 files changed, 10310 insertions(+), 10261 deletions(-)
Title: Help for Writing Unit Tests Based on Function Examples
Description: Take the examples written in your documentation of
functions and use them to create shells (skeletons which must be
manually completed by the user) of test files to be tested with the
'testthat' package. Sort of like python 'doctests' for R.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Thomas Quinn [rev] (<https://orcid.org/0000-0003-0286-6329>),
Laurent Gatto [rev] (<https://orcid.org/0000-0002-1520-2268>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between exampletestr versions 1.6.2 dated 2020-11-17 and 1.6.3 dated 2021-04-24
DESCRIPTION | 9 +-- MD5 | 10 ++-- NEWS.md | 6 ++ inst/doc/one-file-at-a-time.html | 86 ++++++----------------------------- inst/doc/one-function-at-a-time.html | 71 +++------------------------- inst/doc/whole-package.html | 75 ++++-------------------------- 6 files changed, 52 insertions(+), 205 deletions(-)
Title: An Improved Version of WA-PLS
Description: The goal of this package is to provide an improved version of
WA-PLS (Weighted Averaging Partial Least Squares) by including the
tolerances of taxa and the frequency of the sampled climate variable.
This package also provides a way of leave-out cross-validation that
removes both the test site and sites that are both geographically
close and climatically close for each cycle, to avoid the risk of
pseudo-replication.
Author: Mengmeng Liu [aut] (<https://orcid.org/0000-0001-6250-0148>),
Iain Colin Prentice [aut] (<https://orcid.org/0000-0002-1296-6764>),
Cajo J. F. ter Braak [aut] (<https://orcid.org/0000-0002-0414-8745>),
Sandy P. Harrison [aut] (<https://orcid.org/0000-0001-5687-1903>),
Roberto Villegas-Diaz [aut, cre]
(<https://orcid.org/0000-0001-5036-8661>),
SPECIAL Research Group @ University of Reading [cph]
Maintainer: Roberto Villegas-Diaz <r.villegas-diaz@reading.ac.uk>
Diff between fxTWAPLS versions 0.0.5 dated 2021-01-29 and 0.0.6 dated 2021-04-24
fxTWAPLS-0.0.5/fxTWAPLS/tests |only fxTWAPLS-0.0.6/fxTWAPLS/DESCRIPTION | 11 ++-- fxTWAPLS-0.0.6/fxTWAPLS/MD5 | 10 +--- fxTWAPLS-0.0.6/fxTWAPLS/NAMESPACE | 3 - fxTWAPLS-0.0.6/fxTWAPLS/NEWS.md | 5 ++ fxTWAPLS-0.0.6/fxTWAPLS/R/utils.R | 86 ------------------------------------ 6 files changed, 14 insertions(+), 101 deletions(-)
Title: Semi-Automatic Preprocessing of Messy Data with Change Tracking
for Dataset Cleaning
Description: Tools for assessing data quality, performing exploratory analysis, and
semi-automatic preprocessing of messy data with change tracking for integral dataset cleaning.
Author: David Hervas Marin
Maintainer: David Hervas Marin <ddhervas@yahoo.es>
Diff between clickR versions 0.6.64 dated 2021-03-12 and 0.7.35 dated 2021-04-24
clickR-0.6.64/clickR/R/deprecated.R |only clickR-0.6.64/clickR/man/clickR-deprecated.Rd |only clickR-0.6.64/clickR/man/matrixPaste.Rd |only clickR-0.6.64/clickR/man/report.betareg.Rd |only clickR-0.6.64/clickR/man/report.brmsfit.Rd |only clickR-0.6.64/clickR/man/report.clm.Rd |only clickR-0.6.64/clickR/man/report.clmm.Rd |only clickR-0.6.64/clickR/man/report.coxph.Rd |only clickR-0.6.64/clickR/man/report.data.frame.Rd |only clickR-0.6.64/clickR/man/report.factor.Rd |only clickR-0.6.64/clickR/man/report.glm.Rd |only clickR-0.6.64/clickR/man/report.glmerMod.Rd |only clickR-0.6.64/clickR/man/report.glmmadmb.Rd |only clickR-0.6.64/clickR/man/report.glmnet.Rd |only clickR-0.6.64/clickR/man/report.lm.Rd |only clickR-0.6.64/clickR/man/report.lmerMod.Rd |only clickR-0.6.64/clickR/man/report.lqmm.Rd |only clickR-0.6.64/clickR/man/report.merModLmerTest.Rd |only clickR-0.6.64/clickR/man/report.numeric.Rd |only clickR-0.6.64/clickR/man/report.rlm.Rd |only clickR-0.6.64/clickR/man/report.rq.Rd |only clickR-0.6.64/clickR/man/set_noms.Rd |only clickR-0.7.35/clickR/DESCRIPTION | 10 clickR-0.7.35/clickR/MD5 | 87 - clickR-0.7.35/clickR/NAMESPACE | 42 clickR-0.7.35/clickR/NEWS | 16 clickR-0.7.35/clickR/R/check_quality.R | 50 clickR-0.7.35/clickR/R/defunct.R |only clickR-0.7.35/clickR/R/descriptive.R | 170 ++- clickR-0.7.35/clickR/R/fix_functions.R | 143 +- clickR-0.7.35/clickR/R/report_model.R | 1120 +--------------------- clickR-0.7.35/clickR/README.md | 2 clickR-0.7.35/clickR/man/GK_assoc.Rd | 2 clickR-0.7.35/clickR/man/VarCorr.Rd | 17 clickR-0.7.35/clickR/man/bivariate_outliers.Rd |only clickR-0.7.35/clickR/man/clickR-defunct.Rd |only clickR-0.7.35/clickR/man/coefplot.Rd | 60 - clickR-0.7.35/clickR/man/descriptive.Rd | 4 clickR-0.7.35/clickR/man/fix_NA.Rd | 7 clickR-0.7.35/clickR/man/fix_dates.Rd | 9 clickR-0.7.35/clickR/man/fix_factors.Rd | 3 clickR-0.7.35/clickR/man/fix_levels.Rd | 12 clickR-0.7.35/clickR/man/fix_numerics.Rd | 5 clickR-0.7.35/clickR/man/make_csv_table.Rd | 17 clickR-0.7.35/clickR/man/make_latex_table.Rd | 15 clickR-0.7.35/clickR/man/make_table.Rd | 21 clickR-0.7.35/clickR/man/make_word_table.Rd | 19 clickR-0.7.35/clickR/man/nice_names.Rd | 45 clickR-0.7.35/clickR/man/outliers.Rd | 4 clickR-0.7.35/clickR/man/plot.reportmodel.Rd | 18 clickR-0.7.35/clickR/man/report.Rd | 20 clickR-0.7.35/clickR/man/report.default.Rd | 15 clickR-0.7.35/clickR/man/restore_changes.Rd | 2 clickR-0.7.35/clickR/man/rob.ci.Rd | 19 clickR-0.7.35/clickR/man/rob.pvals.Rd | 13 clickR-0.7.35/clickR/man/track_changes.Rd | 2 clickR-0.7.35/clickR/man/ttrue.Rd | 2 57 files changed, 448 insertions(+), 1523 deletions(-)
Title: A Project Infrastructure for Researchers
Description: Provides a project infrastructure with a focus on
manuscript creation. Creates a project folder with a single command,
containing subdirectories for specific components, templates for
manuscripts, and so on.
Author: Nik Krieger [aut, cre],
Adam Perzynski [aut],
Jarrod Dalton [aut]
Maintainer: Nik Krieger <nk@case.edu>
Diff between projects versions 2.1.1 dated 2020-05-29 and 2.1.3 dated 2021-04-24
DESCRIPTION | 9 ++---- MD5 | 22 +++++++-------- NEWS.md | 12 ++++++++ R/file_management.R | 6 ++-- R/getters.R | 8 +++-- R/metadata_manipulation.R | 12 ++++---- R/setup.R | 4 +- R/update.R | 2 - README.md | 50 ++++++++++++++++++------------------ inst/templates/04_report.Rmd | 2 - inst/templates/CONSORT_protocol.Rmd | 3 -- inst/templates/STROBE_protocol.Rmd | 3 -- 12 files changed, 69 insertions(+), 64 deletions(-)
Title: Extended Structural Equation Modelling
Description: Create structural equation models that can be manipulated programmatically.
Models may be specified with matrices or paths (LISREL or RAM)
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
Fit functions include full information maximum likelihood, maximum likelihood, and weighted least squares.
equations, state space, and many others.
Support and advanced package binaries available at <http://openmx.ssri.psu.edu>.
The software is described in Neale, Hunter, Pritikin, Zahery, Brick,
Kirkpatrick, Estabrook, Bates, Maes, & Boker (2016) <doi:10.1007/s11336-014-9435-8>.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Ben Goodrich [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph],
Stefan Wilhelm [cph],
Sarah Medland [cph],
Carl F. Falk [cph],
Matt Keller [cph],
Manjunath B G [cph],
The Regents of the University of California [cph],
Lester Ingber [cph],
Wong Shao Voon [cph],
Juan Palacios [cph],
Jiang Yang [cph],
Gael Guennebaud [cph],
Jitse Niesen [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.19.1 dated 2021-03-08 and 2.19.5 dated 2021-04-24
DESCRIPTION | 10 MD5 | 236 +++++----- R/MxApply.R | 12 R/MxData.R | 11 R/MxDataWLS.R | 2 R/MxExpectationLISREL.R | 11 R/MxExpectationNormal.R | 15 R/MxExpectationRAM.R | 12 R/MxFitFunctionGREML.R | 8 R/MxModel.R | 2 R/MxModelFunctions.R | 1 R/MxRename.R | 8 R/MxRestore.R | 4 R/MxRun.R | 15 R/MxSummary.R | 218 ++++----- R/MxVersion.R | 2 build/OpenMx.pdf |binary inst/CITATION | 2 inst/models/nightly/LegacyContinuousOnlyWLSTest.R | 7 inst/models/passing/ContinuousOnlyWLSTest.R | 28 - inst/models/passing/IntroSEM-BivariateStd.R | 3 inst/models/passing/SaturatedWLSTest.R | 2 inst/models/passing/WeightedWLS.R | 4 inst/models/passing/acov_regression_test.R | 2 inst/models/passing/exoPredWLS.R | 8 inst/models/passing/jointFactorWls.R | 6 man/MxFitFunctionGREML-class.Rd | 9 man/imxEvalByName.Rd | 4 man/imxSfClient.Rd | 2 man/mxAlgebra.Rd | 11 man/mxData.Rd | 14 man/mxFitFunctionWLS.Rd | 47 +- man/summary.MxModel.Rd | 2 src/Compute.cpp | 261 +++++------ src/Compute.h | 17 src/ComputeGD.cpp | 120 ++--- src/ComputeGD.h | 4 src/ComputeNM.cpp | 10 src/ComputeNR.cpp | 30 - src/ComputeSD.cpp | 2 src/ComputeSD.h | 4 src/Connectedness.h | 10 src/EnableWarnings.h | 1 src/LoadDataAPI.h | 14 src/Makevars.in | 4 src/MarkovExpectation.cpp | 14 src/MarkovFF.cpp | 5 src/RAMInternal.h | 44 - src/SelfAdjointEigenSolverNosort.h | 16 src/algebraOp.h | 4 src/asa.c | 2 src/asa.h | 8 src/asa_usr_asa.h | 6 src/asubnp.cpp | 2 src/autoTune.h | 8 src/ba81quad.cpp | 14 src/ba81quad.h | 16 src/dmvnorm.h | 4 src/finiteDifferences.h | 22 src/fitMultigroup.h | 4 src/general.c | 2 src/glue.cpp | 14 src/glue.h | 6 src/matrix.h | 6 src/minicsv.h | 2 src/multi_normal_sufficient.hpp | 20 src/nanotimer.cpp | 6 src/nanotimer_rtposix.h | 8 src/nlopt-internal.h | 2 src/nlopt-util.h | 4 src/nlopt.h | 20 src/nr.h | 8 src/omxAlgebra.cpp | 4 src/omxAlgebra.h | 6 src/omxAlgebraFitFunction.cpp | 4 src/omxBVN.h | 4 src/omxCsolnp.h | 6 src/omxData.cpp | 500 ++++++++++------------ src/omxData.h | 50 +- src/omxDefines.h | 23 - src/omxExpectation.cpp | 8 src/omxExpectation.h | 14 src/omxExpectationBA81.cpp | 38 - src/omxExpectationBA81.h | 20 src/omxExportBackendState.h | 6 src/omxFIMLFitFunction.cpp | 12 src/omxFIMLFitFunction.h | 46 +- src/omxFitFunction.h | 6 src/omxFitFunctionBA81.cpp | 52 +- src/omxGREMLfitfunction.cpp | 248 +++++----- src/omxHessianCalculation.cpp | 10 src/omxImportFrontendState.cpp | 2 src/omxImportFrontendState.h | 6 src/omxLISRELExpectation.cpp | 12 src/omxLISRELExpectation.h | 6 src/omxMLFitFunction.cpp | 22 src/omxMatrix.h | 10 src/omxNLopt.h | 4 src/omxNPSOLSpecific.h | 6 src/omxNormalExpectation.cpp | 8 src/omxRAMExpectation.cpp | 26 - src/omxRFitFunction.h | 6 src/omxRowFitFunction.cpp | 4 src/omxRowFitFunction.h | 6 src/omxSadmvnWrapper.h | 24 - src/omxState.cpp | 18 src/omxState.h | 20 src/omxStateSpaceExpectation.cpp | 12 src/omxWLSFitFunction.cpp | 14 src/path.h | 62 +- src/polynomial.h | 20 src/povRAM.cpp | 10 src/slsqp.c | 5 src/ssMLFit.cpp | 6 tests/testthat/test-LegacyMultipleGroupWLS.R | 8 tests/testthat/test-WLS-acov.R | 8 tests/testthat/test-discrete.R | 2 tests/testthat/test-pearsonSel.R | 2 tools/wls-regression | 2 119 files changed, 1455 insertions(+), 1395 deletions(-)
Title: Play a Game of 2048 in the Console
Description: Generates a game of 2048 that can be played in the
console. Supports grids of arbitrary sizes, undoing the last move,
and resuming a game that was exited during the current session.
Author: Alexander Rossell Hayes [aut, cre, cph]
(<https://orcid.org/0000-0001-9412-0457>)
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between twenty48 versions 0.1.0 dated 2020-09-23 and 0.2.0 dated 2021-04-24
DESCRIPTION | 9 ++-- MD5 | 20 +++++----- NAMESPACE | 1 NEWS.md |only R/Twenty48_class.R | 80 +++++++++++++++++++++++++++++++---------- R/play_2048.R | 65 +++++++++++++++++++++++++++------ R/twenty48-package.R | 1 README.md | 38 +++++++++---------- man/figures/recording.gif |binary man/figures/recording_16x9.gif |only man/play_2048.Rd | 11 ++++- man/twenty48-package.Rd | 2 - 12 files changed, 159 insertions(+), 68 deletions(-)
Title: Fitting Second-Order Tensor Data
Description: An implementation of fitting generalized linear models on
second-order tensor type data. The functions within this package mainly focus on
parameter estimation, including parameter coefficients and standard deviation.
Author: Mark Chen [aut, cre],
Sheng-Mao Chang [aut],
Wenbin Lu [aut],
Jung-Ying Tzeng [aut]
Maintainer: Mark Chen <l501l501l@gmail.com>
Diff between TensorTest2D versions 1.0.1 dated 2021-04-18 and 1.0.2 dated 2021-04-24
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- data/omics.RData |binary 3 files changed, 6 insertions(+), 7 deletions(-)
More information about survivalAnalysis at CRAN
Permanent link
Title: IEX Stocks and Market Data
Description: Retrieves efficiently and reliably Investors Exchange ('IEX') stock and market data using 'IEX Cloud API'. The platform is offered by Investors Exchange Group (IEX Group).
Main goal is to leverage 'R' capabilities including existing packages to effectively provide financial and statistical analysis as well as visualization in support of fact-based decisions.
In addition, continuously improve and enhance 'Riex' by applying best practices and being in tune with users' feedback and requirements.
Please, make sure to review and acknowledge Investors Exchange Group (IEX Group) terms and conditions before using 'Riex' (<https://iexcloud.io/terms/>).
Author: Myriam Ibrahim [aut, cre]
Maintainer: Myriam Ibrahim <ibrahimmyriam7@gmail.com>
Diff between Riex versions 1.0.1 dated 2019-05-05 and 1.0.2 dated 2021-04-24
.Rinstignore |only DESCRIPTION | 12 - MD5 | 43 ++- NAMESPACE | 2 NEWS.md |only R/IEX_Market_Data.R | 195 ++++++++++++---- README.md | 20 - build/vignette.rds |binary inst/doc/iex_stocks_and_market_data.R | 17 + inst/doc/iex_stocks_and_market_data.Rmd | 25 +- inst/doc/iex_stocks_and_market_data.html | 371 +++++++++---------------------- man/crypto.Rd | 8 man/crypto_symbols.Rd | 8 man/financials.Rd | 8 man/iex.book.Rd | 8 man/iex.chart.Rd | 6 man/iex.company.Rd | 6 man/iex.earnings.Rd | 6 man/iex.intraday.Rd |only man/iex.most.active.Rd | 2 man/iex.stats.Rd | 6 man/logo.Rd | 6 vignettes/.install_extras |only vignettes/HadleyWickham_Quote.png |only vignettes/TSLA.png |only vignettes/TSLA_6M_Chart.png |only vignettes/iex_stocks_and_market_data.Rmd | 25 +- 27 files changed, 394 insertions(+), 380 deletions(-)
Title: Downloading, Reading and Analysing PNS Microdata
Description: Provides tools for downloading, reading and analysing the PNS,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between PNSIBGE versions 0.1.1 dated 2021-01-31 and 0.1.2 dated 2021-04-24
DESCRIPTION | 11 +++++------ MD5 | 22 +++++++++++----------- NAMESPACE | 2 ++ R/example.R | 4 ++-- R/get_pns.R | 34 ++++++++++++++++++++++------------ R/pns_deflator.R | 6 +++--- R/pns_design.R | 10 +++++----- R/pns_labeller.R | 4 ++-- R/read_pns.R | 4 ++-- man/get_pns.Rd | 6 +++--- man/pns_design.Rd | 4 ++-- man/pns_example.Rd | 2 +- 12 files changed, 60 insertions(+), 49 deletions(-)
Title: Various Utilities for Library Science/Assessment and Cataloging
Description: Provides functions for validating and normalizing bibliographic
codes such as ISBN, ISSN, and LCCN. Also includes functions to communicate
with the WorldCat API, translate Call numbers (Library of Congress and
Dewey Decimal) to their subject classifications or subclassifications,
and provides various loadable data files such call number / subject
crosswalks and code tables.
Author: Tony Fischetti [aut, cre]
Maintainer: Tony Fischetti <tony.fischetti@gmail.com>
Diff between libbib versions 1.0 dated 2021-04-15 and 1.5 dated 2021-04-24
libbib-1.0/libbib/R/lccall-subject.R |only libbib-1.0/libbib/tests/testthat/test-lccall-subject.R |only libbib-1.5/libbib/DESCRIPTION | 16 libbib-1.5/libbib/MD5 | 106 +++- libbib-1.5/libbib/NAMESPACE | 30 + libbib-1.5/libbib/NEWS.md |only libbib-1.5/libbib/R/bibcodes.R | 30 + libbib-1.5/libbib/R/books_serials_etc_sample_data.R |only libbib-1.5/libbib/R/call-numbers-and-subject.R |only libbib-1.5/libbib/R/dewey_subject_crosswalk-data.R |only libbib-1.5/libbib/R/marc-field-deconstruction.R |only libbib-1.5/libbib/R/other-code-translations.R |only libbib-1.5/libbib/R/split-map-filter-reduce.R |only libbib-1.5/libbib/R/the-web.R | 77 +++ libbib-1.5/libbib/R/utilities.R |only libbib-1.5/libbib/R/worldcat-api.R |only libbib-1.5/libbib/README.md | 226 +++++++++- libbib-1.5/libbib/data/books_serials_etc_sample.rda |only libbib-1.5/libbib/data/dewey_subject_crosswalk.rda |only libbib-1.5/libbib/data/lc_subject_classification.rda |binary libbib-1.5/libbib/data/lc_subject_subclassification.rda |binary libbib-1.5/libbib/man/books_serials_etc_sample.Rd |only libbib-1.5/libbib/man/car.Rd |only libbib-1.5/libbib/man/check_isbn_10_check_digit.Rd | 6 libbib-1.5/libbib/man/check_isbn_13_check_digit.Rd | 6 libbib-1.5/libbib/man/check_issn_check_digit.Rd | 6 libbib-1.5/libbib/man/convert_to_isbn_13.Rd | 6 libbib-1.5/libbib/man/dewey_subject_crosswalk.Rd |only libbib-1.5/libbib/man/dt_add_to_col_names.Rd |only libbib-1.5/libbib/man/dt_counts_and_percents.Rd |only libbib-1.5/libbib/man/dt_del_cols.Rd |only libbib-1.5/libbib/man/dt_keep_cols.Rd |only libbib-1.5/libbib/man/dt_percent_not_na.Rd |only libbib-1.5/libbib/man/dt_set_clean_names.Rd |only libbib-1.5/libbib/man/get_all_lc_call_subject_letters.Rd | 8 libbib-1.5/libbib/man/get_clean_names.Rd |only libbib-1.5/libbib/man/get_country_from_code.Rd |only libbib-1.5/libbib/man/get_dewey_decimal_subject_class.Rd |only libbib-1.5/libbib/man/get_dewey_decimal_subject_division.Rd |only libbib-1.5/libbib/man/get_dewey_decimal_subject_section.Rd |only libbib-1.5/libbib/man/get_isbn_10_check_digit.Rd | 6 libbib-1.5/libbib/man/get_isbn_13_check_digit.Rd | 6 libbib-1.5/libbib/man/get_issn_check_digit.Rd | 6 libbib-1.5/libbib/man/get_language_from_code.Rd |only libbib-1.5/libbib/man/get_lc_call_first_letter.Rd | 8 libbib-1.5/libbib/man/get_lc_call_subject_classification.Rd | 13 libbib-1.5/libbib/man/is_valid_isbn_10.Rd | 6 libbib-1.5/libbib/man/is_valid_isbn_13.Rd | 3 libbib-1.5/libbib/man/is_valid_issn.Rd | 6 libbib-1.5/libbib/man/is_valid_lc_call.Rd | 8 libbib-1.5/libbib/man/loc_permalink_from_lccn.Rd | 13 libbib-1.5/libbib/man/marc_008_get_info.Rd |only libbib-1.5/libbib/man/marc_leader_get_info.Rd |only libbib-1.5/libbib/man/normalize_isbn.Rd | 6 libbib-1.5/libbib/man/normalize_isbn_10.Rd | 6 libbib-1.5/libbib/man/normalize_isbn_13.Rd | 3 libbib-1.5/libbib/man/normalize_issn.Rd | 6 libbib-1.5/libbib/man/normalize_lccn.Rd | 2 libbib-1.5/libbib/man/oclc_classify_link_from_standard_num.Rd |only libbib-1.5/libbib/man/recombine_with_sep_closure.Rd |only libbib-1.5/libbib/man/remove_duplicates_and_nas.Rd |only libbib-1.5/libbib/man/split_map_filter_reduce.Rd |only libbib-1.5/libbib/man/worldcat_api_bib_read_info_by.Rd |only libbib-1.5/libbib/man/worldcat_api_classify_by.Rd |only libbib-1.5/libbib/man/worldcat_api_locations_by.Rd |only libbib-1.5/libbib/man/worldcat_api_search.Rd |only libbib-1.5/libbib/man/worldcat_permalink_from_isbn.Rd | 2 libbib-1.5/libbib/man/worldcat_permalink_from_issn.Rd | 2 libbib-1.5/libbib/man/worldcat_permalink_from_oclc_number.Rd | 1 libbib-1.5/libbib/tests/testthat/test-call-numbers-and-subject.R |only libbib-1.5/libbib/tests/testthat/test-marc-field-deconstruction.R |only libbib-1.5/libbib/tests/testthat/test-other-code-translations.R |only libbib-1.5/libbib/tests/testthat/test-split-map-filter-reduce.R |only libbib-1.5/libbib/tests/testthat/test-the-web.R | 29 + libbib-1.5/libbib/tests/testthat/test-utilities.R |only libbib-1.5/libbib/tests/testthat/test-worldcat-api.R |only 76 files changed, 548 insertions(+), 101 deletions(-)
Title: SEC Filings Access
Description: A set of methods to access and parse live filing information from the
U.S. Securities and Exchange Commission (SEC - <https://www.sec.gov/>) including
company and fund filings along with all associated metadata.
Author: Micah J Waldstein [aut, cre]
Maintainer: Micah J Waldstein <micah@waldste.in>
Diff between edgarWebR versions 1.0.3 dated 2020-09-28 and 1.1.0 dated 2021-04-24
edgarWebR-1.0.3/edgarWebR/tests/cache/EDGAR_MainAccess.jsp-374e92.html |only edgarWebR-1.0.3/edgarWebR/tests/cache/EDGAR_MainAccess.jsp-7edfa4.html |only edgarWebR-1.0.3/edgarWebR/tests/cache/browse-edgar-475140.html |only edgarWebR-1.1.0/edgarWebR/DESCRIPTION | 10 edgarWebR-1.1.0/edgarWebR/MD5 | 200 edgarWebR-1.1.0/edgarWebR/R/browse_edgar.R | 2 edgarWebR-1.1.0/edgarWebR/R/cik_search.R | 7 edgarWebR-1.1.0/edgarWebR/R/company_details.R | 2 edgarWebR-1.1.0/edgarWebR/R/company_filings.R | 2 edgarWebR-1.1.0/edgarWebR/R/company_information.R | 2 edgarWebR-1.1.0/edgarWebR/R/company_search.R | 7 edgarWebR-1.1.0/edgarWebR/R/current_events.R | 7 edgarWebR-1.1.0/edgarWebR/R/effectiveness.R | 7 edgarWebR-1.1.0/edgarWebR/R/filing_details.R | 2 edgarWebR-1.1.0/edgarWebR/R/filing_documents.R | 2 edgarWebR-1.1.0/edgarWebR/R/filing_filers.R | 2 edgarWebR-1.1.0/edgarWebR/R/filing_funds.R | 2 edgarWebR-1.1.0/edgarWebR/R/filing_information.R | 2 edgarWebR-1.1.0/edgarWebR/R/full_text.R | 174 edgarWebR-1.1.0/edgarWebR/R/fund_search.R | 4 edgarWebR-1.1.0/edgarWebR/R/header_search.R | 8 edgarWebR-1.1.0/edgarWebR/R/latest_filings.R | 7 edgarWebR-1.1.0/edgarWebR/R/parse_filing.R | 8 edgarWebR-1.1.0/edgarWebR/R/parse_submission.R | 8 edgarWebR-1.1.0/edgarWebR/R/series_search.R | 5 edgarWebR-1.1.0/edgarWebR/R/sic_codes.R | 2 edgarWebR-1.1.0/edgarWebR/R/user_agent.R |only edgarWebR-1.1.0/edgarWebR/R/utils.R | 9 edgarWebR-1.1.0/edgarWebR/R/variable_insurance_search.R | 4 edgarWebR-1.1.0/edgarWebR/README.md | 68 edgarWebR-1.1.0/edgarWebR/inst/doc/edgarWebR.html | 132 edgarWebR-1.1.0/edgarWebR/inst/doc/parsing.html | 19 edgarWebR-1.1.0/edgarWebR/inst/httptest/redact.R | 1 edgarWebR-1.1.0/edgarWebR/inst/httptest/request.R | 1 edgarWebR-1.1.0/edgarWebR/man/cik_search.Rd | 2 edgarWebR-1.1.0/edgarWebR/man/company_details.Rd | 2 edgarWebR-1.1.0/edgarWebR/man/company_filings.Rd | 2 edgarWebR-1.1.0/edgarWebR/man/company_information.Rd | 2 edgarWebR-1.1.0/edgarWebR/man/company_search.Rd | 2 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More information about covidregionaldata at CRAN
Permanent link
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.21 dated 2021-04-18 and 0.0.22 dated 2021-04-24
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 1 + R/batsmanRunsAgainstOpposition.R | 4 ++-- R/plotWinLossBetweenTeams.R | 30 +++++++----------------------- R/plotWinLossTeamVsAllTeams.R |only man/plotWinLossTeamVsAllTeams.Rd |only 7 files changed, 20 insertions(+), 33 deletions(-)
Title: A Soil Survey Toolkit
Description: Miscellaneous soil data management, summary, visualization, and conversion utilities to support soil survey.
Author: Dylan Beaudette [cre, aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
USDA-NRCS Soil Survey Staff [ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between sharpshootR versions 1.7 dated 2021-01-27 and 1.8 dated 2021-04-24
sharpshootR-1.7/sharpshootR/R/water-balance.R |only sharpshootR-1.8/sharpshootR/DESCRIPTION | 20 sharpshootR-1.8/sharpshootR/MD5 | 79 - sharpshootR-1.8/sharpshootR/NAMESPACE | 12 sharpshootR-1.8/sharpshootR/R/CDEC_StationInfo.R | 209 ++- sharpshootR-1.8/sharpshootR/R/CDECquery.R | 510 ++++----- sharpshootR-1.8/sharpshootR/R/PLSS2LL.R | 130 -- sharpshootR-1.8/sharpshootR/R/SoilTaxonomyDendrogram.R | 188 +++ sharpshootR-1.8/sharpshootR/R/colorMixtureVenn.R |only sharpshootR-1.8/sharpshootR/R/dailyWB.R |only sharpshootR-1.8/sharpshootR/R/dailyWB_SSURGO.R |only sharpshootR-1.8/sharpshootR/R/estimateSoilMoistureState.R |only sharpshootR-1.8/sharpshootR/R/geomorphBySoilSeries-SSURGO.R | 528 +++++----- sharpshootR-1.8/sharpshootR/R/huePositionPlot.R | 7 sharpshootR-1.8/sharpshootR/R/isMineralSoilMaterial.R |only sharpshootR-1.8/sharpshootR/R/moistureStateProportions.R |only sharpshootR-1.8/sharpshootR/R/moistureStateThreshold.R |only sharpshootR-1.8/sharpshootR/R/monthlyWB.R |only sharpshootR-1.8/sharpshootR/R/plotAvailWater.R | 82 + sharpshootR-1.8/sharpshootR/R/plotSoilRelationGraph.R | 124 ++ sharpshootR-1.8/sharpshootR/R/plotWB.R |only sharpshootR-1.8/sharpshootR/R/prepareDailyClimateData.R |only sharpshootR-1.8/sharpshootR/R/prepare_SSURGO_hydro_data.R |only sharpshootR-1.8/sharpshootR/R/simpleWB.R |only sharpshootR-1.8/sharpshootR/R/transect-functions.R | 137 ++ sharpshootR-1.8/sharpshootR/R/vizAnnualClimate.R | 88 + sharpshootR-1.8/sharpshootR/man/CDEC_StationInfo.Rd | 78 - sharpshootR-1.8/sharpshootR/man/CDECquery.Rd | 4 sharpshootR-1.8/sharpshootR/man/LL2PLSS.Rd | 20 sharpshootR-1.8/sharpshootR/man/PLSS2LL.Rd | 26 sharpshootR-1.8/sharpshootR/man/SoilTaxonomyDendrogram.Rd | 278 +++-- sharpshootR-1.8/sharpshootR/man/colorMixtureVenn.Rd |only sharpshootR-1.8/sharpshootR/man/dailyWB.Rd |only sharpshootR-1.8/sharpshootR/man/dailyWB_SSURGO.Rd |only sharpshootR-1.8/sharpshootR/man/estimateSoilMoistureState.Rd |only sharpshootR-1.8/sharpshootR/man/formatPLSS.Rd | 3 sharpshootR-1.8/sharpshootR/man/huePositionPlot.Rd | 6 sharpshootR-1.8/sharpshootR/man/isMineralSoilMaterial.Rd |only sharpshootR-1.8/sharpshootR/man/moistureStateProportions.Rd |only sharpshootR-1.8/sharpshootR/man/moistureStateThreshold.Rd |only sharpshootR-1.8/sharpshootR/man/monthlyWB.Rd | 22 sharpshootR-1.8/sharpshootR/man/plotAvailWater.Rd | 189 +-- sharpshootR-1.8/sharpshootR/man/plotSoilRelationGraph.Rd | 254 ++-- sharpshootR-1.8/sharpshootR/man/plotTransect.Rd | 244 ++-- sharpshootR-1.8/sharpshootR/man/plotWB.Rd | 2 sharpshootR-1.8/sharpshootR/man/prepareDailyClimateData.Rd |only sharpshootR-1.8/sharpshootR/man/prepare_SSURGO_hydro_data.Rd |only sharpshootR-1.8/sharpshootR/man/simpleWB.Rd |only sharpshootR-1.8/sharpshootR/man/vizAnnualClimate.Rd | 206 +-- sharpshootR-1.8/sharpshootR/tests/testthat/test-PLSS2LL.R | 9 sharpshootR-1.8/sharpshootR/tests/testthat/test-SoilTaxonomyDendrogram.R | 8 sharpshootR-1.8/sharpshootR/tests/testthat/test-plotProfileDendrogram.R | 6 52 files changed, 2141 insertions(+), 1328 deletions(-)
Title: Joint Frailty-Copula Models for Tumour Progression and Death in
Meta-Analysis
Description: Fit survival data and perform dynamic prediction under joint frailty-copula models for tumour progression and death.
Likelihood-based methods are employed for estimating model parameters, where the baseline hazard functions are modeled by the cubic M-spline or the Weibull model.
The methods are applicable for meta-analytic data containing individual-patient information from several studies.
Survival outcomes need information on both terminal event time (e.g., time-to-death) and non-terminal event time (e.g., time-to-tumour progression).
Methodologies were published in
Emura et al. (2017) <doi:10.1177/0962280215604510>, Emura et al. (2018) <doi:10.1177/0962280216688032>,
Emura et al. (2020) <doi:10.1177/0962280219892295>, Shinohara et al. (2020) <doi:10.1080/03610918.2020.1855449>
and Wu et al. (2020) <doi:10.1007/s00180-020-00977-1>.
See also the book of Emura et al. (2019) <doi:10.1007/978-981-13-3516-7>.
Survival data from ovarian cancer patients are also available.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between joint.Cox versions 3.10 dated 2020-12-08 and 3.11 dated 2021-04-24
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/jointCox.Weibull.reg.R | 28 ++++++++++++++++------------ R/jointCox.reg.R | 25 +++++++++++++------------ man/joint.Cox-package.Rd | 4 ++-- man/jointCox.Weibull.reg.Rd | 8 +++----- man/jointCox.reg.Rd | 4 +++- 7 files changed, 47 insertions(+), 42 deletions(-)
Title: Identification and Classification of the Most Influential Nodes
Description: Contains functions for the classification and ranking of top candidate features, reconstruction of networks from
adjacency matrices and data frames, analysis of the topology of the network
and calculation of centrality measures, and identification of the most
influential nodes. Also, a function is provided for running SIRIR model, which
is the combination of leave-one-out cross validation technique and the conventional SIR model, on a network to unsupervisedly rank the true influence of vertices. Additionally, some functions have been provided for the assessment
of dependence and correlation of two network centrality measures as well as
the conditional probability of deviation from their corresponding means in opposite direction.
Fred Viole and David Nawrocki (2013, ISBN:1490523995).
Csardi G, Nepusz T (2006). "The igraph software package for complex network research." InterJournal, Complex Systems, 1695.
Adopted algorithms and sources are referenced in function document.
Author: Adrian (Abbas) Salavaty [aut, cre], Mirana Ramialison [ths], Peter D. Currie [ths]
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 2.2.0 dated 2021-04-17 and 2.2.1 dated 2021-04-24
DESCRIPTION | 9 MD5 | 32 NEWS.md | 19 R/functions.R | 18 README.md | 22 inst/ShinyApps/ExIR/app.R | 1756 ++++++++++++++++++++++----------------------- inst/ShinyApps/IVI/app.R | 2 inst/doc/Vignettes.Rmd | 4 inst/doc/Vignettes.html | 8 man/cent_network.vis.Rd | 2 man/comp_manipulate.Rd | 2 man/exir.Rd | 2 man/exir.vis.Rd | 2 man/influential-package.Rd | 2 man/ivi.Rd | 2 man/ivi.from.indices.Rd | 2 vignettes/Vignettes.Rmd | 4 17 files changed, 959 insertions(+), 929 deletions(-)
More information about geneExpressionFromGEO at CRAN
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Title: Fit Continuous-Time State-Space and Latent Variable Models for
Quality Control of Argos Satellite (and Other) Telemetry Data
and for Estimating Movement Behaviour
Description: Fits continuous-time random walk and correlated random walk state-space models for quality control animal tracking data ('Argos', processed light-level 'geolocation', 'GPS'). Template Model Builder ('TMB') is used for fast estimation. The 'Argos' data can be: (older) least squares-based locations; (newer) Kalman filter-based locations with error ellipse information; or a mixture of both. The models estimate two sets of location states corresponding to: 1) each observation, which are (usually) irregularly timed; and 2) user-specified time intervals (regular or irregular). Latent variable models are provided to estimate move persistence along tracks as an index of behaviour. Track simulation functions are provided. 'Jonsen I', 'McMahon CR', 'Patterson TA', 'Auger-Méthé M', 'Harcourt R', 'Hindell MA', 'Bestley S' (2019) Movement responses to environment: fast inference of variation among southern elephant seals with a mixed effects model. Ecology 100:e02566 <doi:10.1002/ecy.2566>.
Author: Ian Jonsen [aut, cre, cph],
Toby Patterson [aut, ctb]
Maintainer: Ian Jonsen <ian.jonsen@mq.edu.au>
Diff between foieGras versions 0.6-9 dated 2020-07-22 and 0.7-5 dated 2021-04-24
foieGras-0.6-9/foieGras/data/ellies.RData |only foieGras-0.6-9/foieGras/man/ellies.Rd |only foieGras-0.7-5/foieGras/DESCRIPTION | 20 foieGras-0.7-5/foieGras/MD5 | 140 ++- foieGras-0.7-5/foieGras/NAMESPACE | 32 foieGras-0.7-5/foieGras/NEWS.md | 25 foieGras-0.7-5/foieGras/R/fit_mpm.R | 100 +- foieGras-0.7-5/foieGras/R/fit_ssm.R | 77 + foieGras-0.7-5/foieGras/R/fmap.R | 223 +++-- foieGras-0.7-5/foieGras/R/foieGras-package.R | 49 - foieGras-0.7-5/foieGras/R/grab.R | 19 foieGras-0.7-5/foieGras/R/mpm_control.R |only foieGras-0.7-5/foieGras/R/mpmf.R | 90 -- foieGras-0.7-5/foieGras/R/osar.r | 15 foieGras-0.7-5/foieGras/R/plot.fG_mpm.R | 129 ++- foieGras-0.7-5/foieGras/R/plot.fG_osar.R | 104 +- foieGras-0.7-5/foieGras/R/plot.fG_sim.R |only foieGras-0.7-5/foieGras/R/plot.fG_simfit.R |only foieGras-0.7-5/foieGras/R/plot.fG_ssm.R | 417 +++++----- foieGras-0.7-5/foieGras/R/prefilter.R | 6 foieGras-0.7-5/foieGras/R/print.ssm.R | 12 foieGras-0.7-5/foieGras/R/rtnorm.R |only foieGras-0.7-5/foieGras/R/sfilter.R | 190 ++-- foieGras-0.7-5/foieGras/R/sim.R |only foieGras-0.7-5/foieGras/R/simfit.R |only foieGras-0.7-5/foieGras/R/ssm_control.R |only foieGras-0.7-5/foieGras/README.md | 74 - foieGras-0.7-5/foieGras/build/vignette.rds |binary foieGras-0.7-5/foieGras/data/res.RData |only foieGras-0.7-5/foieGras/data/sese.RData |only foieGras-0.7-5/foieGras/data/sese1.RData |only foieGras-0.7-5/foieGras/data/xm.RData |binary foieGras-0.7-5/foieGras/data/xs.RData |binary foieGras-0.7-5/foieGras/inst/CITATION | 2 foieGras-0.7-5/foieGras/inst/doc/basics.R | 44 - foieGras-0.7-5/foieGras/inst/doc/basics.Rmd | 61 + foieGras-0.7-5/foieGras/inst/doc/basics.html | 149 ++- foieGras-0.7-5/foieGras/inst/extdata |only foieGras-0.7-5/foieGras/man/argos_lc.Rd |only foieGras-0.7-5/foieGras/man/ellie.Rd | 2 foieGras-0.7-5/foieGras/man/ellp.par.Rd |only foieGras-0.7-5/foieGras/man/emf.Rd | 2 foieGras-0.7-5/foieGras/man/figures/README-example-1.png |binary foieGras-0.7-5/foieGras/man/figures/README-example-2.png |binary foieGras-0.7-5/foieGras/man/figures/README-example-3.png |binary foieGras-0.7-5/foieGras/man/figures/lifecycle-archived.svg |only foieGras-0.7-5/foieGras/man/figures/lifecycle-defunct.svg |only foieGras-0.7-5/foieGras/man/figures/lifecycle-deprecated.svg |only foieGras-0.7-5/foieGras/man/figures/lifecycle-experimental.svg |only foieGras-0.7-5/foieGras/man/figures/lifecycle-maturing.svg |only foieGras-0.7-5/foieGras/man/figures/lifecycle-questioning.svg |only foieGras-0.7-5/foieGras/man/figures/lifecycle-stable.svg |only foieGras-0.7-5/foieGras/man/figures/lifecycle-superseded.svg |only foieGras-0.7-5/foieGras/man/fit_mpm.Rd | 46 - foieGras-0.7-5/foieGras/man/fit_ssm.Rd | 67 - foieGras-0.7-5/foieGras/man/fmap.Rd | 31 foieGras-0.7-5/foieGras/man/grab.Rd | 6 foieGras-0.7-5/foieGras/man/join.Rd | 4 foieGras-0.7-5/foieGras/man/mpm_control.Rd |only foieGras-0.7-5/foieGras/man/mpmf.Rd | 19 foieGras-0.7-5/foieGras/man/osar.Rd | 2 foieGras-0.7-5/foieGras/man/plot.fG_mpm.Rd | 29 foieGras-0.7-5/foieGras/man/plot.fG_osar.Rd | 22 foieGras-0.7-5/foieGras/man/plot.fG_sim.Rd |only foieGras-0.7-5/foieGras/man/plot.fG_simfit.Rd |only foieGras-0.7-5/foieGras/man/plot.fG_ssm.Rd | 21 foieGras-0.7-5/foieGras/man/prefilter.Rd | 2 foieGras-0.7-5/foieGras/man/res.Rd |only foieGras-0.7-5/foieGras/man/rtnorm.Rd |only foieGras-0.7-5/foieGras/man/sese.Rd |only foieGras-0.7-5/foieGras/man/sese1.Rd |only foieGras-0.7-5/foieGras/man/sfilter.Rd | 22 foieGras-0.7-5/foieGras/man/sim.Rd |only foieGras-0.7-5/foieGras/man/simfit.Rd |only foieGras-0.7-5/foieGras/man/ssm_control.Rd |only foieGras-0.7-5/foieGras/man/xm.Rd | 2 foieGras-0.7-5/foieGras/src/TMB/sub/crw.hpp | 20 foieGras-0.7-5/foieGras/src/TMB/sub/rw.hpp | 6 foieGras-0.7-5/foieGras/tests/testthat/test-emf.R | 5 foieGras-0.7-5/foieGras/tests/testthat/test-fit_mpm.R | 22 foieGras-0.7-5/foieGras/tests/testthat/test-fit_ssm.R | 46 - foieGras-0.7-5/foieGras/tests/testthat/test-fmap.R | 2 foieGras-0.7-5/foieGras/tests/testthat/test-osar.R | 35 foieGras-0.7-5/foieGras/tests/testthat/test-plot_mpm.R | 27 foieGras-0.7-5/foieGras/tests/testthat/test-plot_sim.R |only foieGras-0.7-5/foieGras/tests/testthat/test-plot_simfit.R |only foieGras-0.7-5/foieGras/tests/testthat/test-plot_ssm.R | 31 foieGras-0.7-5/foieGras/tests/testthat/test-sim.R |only foieGras-0.7-5/foieGras/vignettes/basics.Rmd | 61 + 89 files changed, 1599 insertions(+), 911 deletions(-)
Title: R Functions for Directed Acyclic Graphs
Description: Functions to draw, manipulate, evaluate directed
acyclic graphs and simulate corresponding data.
Author: Lutz P Breitling
Maintainer: Lutz P Breitling <l.breitling@posteo.de>
Diff between dagR versions 1.1.3 dated 2014-01-09 and 1.2.0 dated 2021-04-24
DESCRIPTION | 14 +++--- MD5 | 100 ++++++++++++++++++++++++++----------------------- NAMESPACE | 9 ++++ NEWS | 10 +++- R/dag.letter2.R |only R/dagR2dagitty.R |only R/plot.dagRdag.R |only R/print.dagRdag.R |only R/summary.dagRdag.R |only man/add.arc.Rd | 2 man/add.node.Rd | 2 man/addAngle.Rd | 2 man/allCombs.Rd | 2 man/angle.Rd | 2 man/anglePoint.Rd | 2 man/assoc.exists.Rd | 2 man/brute.search.Rd | 2 man/dag.adjust.Rd | 2 man/dag.adjustment.Rd | 2 man/dag.ancestors.Rd | 2 man/dag.draw.Rd | 8 +-- man/dag.init.Rd | 2 man/dag.legend.Rd | 2 man/dag.letter.Rd | 2 man/dag.letter2.Rd |only man/dag.move.Rd | 2 man/dag.search.Rd | 2 man/dag.sim.Rd | 24 +++++------ man/dagR-package.Rd | 30 ++++++-------- man/dagR2dagitty.Rd |only man/demo.dag0.Rd | 2 man/demo.dag1.Rd | 2 man/demo.dag2.Rd | 2 man/demo.dag3.Rd | 4 - man/demo.dag4.Rd | 2 man/demo.dag5.Rd | 2 man/demo.dag6.Rd | 2 man/demo.dag7.Rd | 4 - man/distPoints.Rd | 2 man/eval.paths.Rd | 2 man/find.paths.Rd | 2 man/garrows.Rd | 2 man/inAngle.Rd | 2 man/is.acyclic.Rd | 2 man/is.in.Rd | 2 man/is.unknown.Rd | 2 man/msas.Rd | 2 man/plot.dagRdag.Rd |only man/print.dagRdag.Rd |only man/rm.arc.Rd | 2 man/rm.node.Rd | 2 man/smoothArc.Rd | 2 man/summary.dagRdag.Rd |only man/summary_dagRdag.Rd | 13 +++--- man/viv.Rd | 2 man/write.paths.Rd | 2 56 files changed, 157 insertions(+), 131 deletions(-)
Title: Bitwise Operations
Description: Functions for bitwise operations on integer vectors.
Author: S original by Steve Dutky <sdutky@terpalum.umd.edu> initial R
port and extensions by Martin Maechler; revised and modified
by Steve Dutky
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between bitops versions 1.0-6 dated 2013-08-18 and 1.0-7 dated 2021-04-24
ChangeLog | 29 +++++ DESCRIPTION | 10 + MD5 | 25 ++-- NAMESPACE | 4 R/bitops.R | 25 ++-- README.md | 16 +++ man/bitAnd.Rd | 28 +++-- man/bitFlip.Rd | 21 +++- man/bitShiftL.Rd | 52 ++++++++-- src/bit-ops.c | 188 ++++++++++++++++++------------------ src/bit-ops.h | 4 src/cksum.c | 2 src/init.c |only tests/consistency.R | 267 +++++++++++++++++++++++++++------------------------- 14 files changed, 399 insertions(+), 272 deletions(-)
Title: Weighted Subspace Random Forest for Classification
Description: A parallel implementation of Weighted Subspace Random Forest. The
Weighted Subspace Random Forest algorithm was proposed in the
International Journal of Data Warehousing and Mining by Baoxun Xu,
Joshua Zhexue Huang, Graham Williams, Qiang Wang, and Yunming Ye
(2012) <DOI:10.4018/jdwm.2012040103>. The algorithm can classify
very high-dimensional data with random forests built using small
subspaces. A novel variable weighting method is used for variable
subspace selection in place of the traditional random variable
sampling.This new approach is particularly useful in building
models from high-dimensional data.
Author: Qinghan Meng [aut],
He Zhao [aut, cre] (<https://orcid.org/0000-0001-5763-9743>),
Graham J. Williams [aut] (<https://orcid.org/0000-0001-7041-4127>),
Junchao Lv [aut],
Baoxun Xu [aut],
Joshua Zhexue Huang [aut] (<https://orcid.org/0000-0002-6797-2571>)
Maintainer: He Zhao <Simon.Yansen.Zhao@gmail.com>
Diff between wsrf versions 1.7.17 dated 2017-09-25 and 1.7.20 dated 2021-04-24
DESCRIPTION | 28 +- MD5 | 16 - README.md | 2 build/vignette.rds |binary inst/NEWS.Rd | 35 ++ inst/doc/wsrf-guide.R | 28 +- inst/doc/wsrf-guide.html | 637 +++++++++++++++++++++++++++++++++++----------- src/c4_5_var_selector.cpp | 2 vignettes/wsrf-guide.bib | 2 9 files changed, 564 insertions(+), 186 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Andre Simon [ctb] (the CSS files under inst/themes/ were derived from
the Highlight package http://www.andre-simon.de),
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Ben Baumer [ctb],
Brian Diggs [ctb],
Brian Zhang [ctb],
Bulat Yapparov [ctb],
Cassio Pereira [ctb],
Christophe Dervieux [ctb],
David Hall [ctb],
David Hugh-Jones [ctb],
David Robinson [ctb],
Doug Hemken [ctb],
Duncan Murdoch [ctb],
Elio Campitelli [ctb],
Ellis Hughes [ctb],
Emily Riederer [ctb],
Fabian Hirschmann [ctb],
Fitch Simeon [ctb],
Forest Fang [ctb],
Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty),
Garrick Aden-Buie [ctb],
Gregoire Detrez [ctb],
Hadley Wickham [ctb],
Hao Zhu [ctb],
Heewon Jeon [ctb],
Henrik Bengtsson [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
Hodges Daniel [ctb],
Jake Burkhead [ctb],
James Manton [ctb],
Jared Lander [ctb],
Jason Punyon [ctb],
Javier Luraschi [ctb],
Jeff Arnold [ctb],
Jenny Bryan [ctb],
Jeremy Ashkenas [ctb, cph] (the CSS file at
inst/misc/docco-classic.css),
Jeremy Stephens [ctb],
Jim Hester [ctb],
Joe Cheng [ctb],
Johannes Ranke [ctb],
John Honaker [ctb],
John Muschelli [ctb],
Jonathan Keane [ctb],
JJ Allaire [ctb],
Johan Toloe [ctb],
Jonathan Sidi [ctb],
Joseph Larmarange [ctb],
Julien Barnier [ctb],
Kaiyin Zhong [ctb],
Kamil Slowikowski [ctb],
Karl Forner [ctb],
Kevin K. Smith [ctb],
Kirill Mueller [ctb],
Kohske Takahashi [ctb],
Lorenz Walthert [ctb],
Lucas Gallindo [ctb],
Marius Hofert [ctb],
Martin Modrák [ctb],
Michael Chirico [ctb],
Michael Friendly [ctb],
Michal Bojanowski [ctb],
Michel Kuhlmann [ctb],
Miller Patrick [ctb],
Nacho Caballero [ctb],
Nick Salkowski [ctb],
Niels Richard Hansen [ctb],
Noam Ross [ctb],
Obada Mahdi [ctb],
Pavel N. Krivitsky [ctb] (<https://orcid.org/0000-0002-9101-3362>),
Qiang Li [ctb],
Ramnath Vaidyanathan [ctb],
Richard Cotton [ctb],
Robert Krzyzanowski [ctb],
Romain Francois [ctb],
Ruaridh Williamson [ctb],
Scott Kostyshak [ctb],
Sebastian Meyer [ctb],
Sietse Brouwer [ctb],
Simon de Bernard [ctb],
Sylvain Rousseau [ctb],
Taiyun Wei [ctb],
Thibaut Assus [ctb],
Thibaut Lamadon [ctb],
Thomas Leeper [ctb],
Tim Mastny [ctb],
Tom Torsney-Weir [ctb],
Trevor Davis [ctb],
Viktoras Veitas [ctb],
Weicheng Zhu [ctb],
Wush Wu [ctb],
Zachary Foster [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.32 dated 2021-04-14 and 1.33 dated 2021-04-24
DESCRIPTION | 8 +++-- MD5 | 42 ++++++++++++++++-------------- NAMESPACE | 27 ++++++++++--------- R/block.R | 12 ++++---- R/engine.R | 24 ++++++++++------- R/output.R | 59 +++++++++++++++++++++++++++++-------------- R/plot.R | 32 ++++++++++++++++++++--- R/table.R | 19 ++++++++++--- R/utils-conversion.R | 19 +++++-------- R/utils-vignettes.R | 6 ++-- R/utils.R | 24 +++++++++++------ inst/doc/knit_expand.html | 4 +- inst/doc/knit_print.html | 12 ++++---- inst/doc/knitr-intro.html | 10 +++---- inst/doc/knitr-markdown.html | 2 - inst/doc/knitr-refcard.pdf |binary man/engine_output.Rd | 11 +++----- man/is_low_change.Rd |only man/knit2html.Rd | 2 - man/plot_crop.Rd | 2 - man/sew.Rd |only tests/testit/test-hooks-md.R | 2 - tests/testit/test-table.R | 13 +++++++++ 23 files changed, 209 insertions(+), 121 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-10 0.1.1
Title: R Bindings for Calling the 'Earth Engine' API
Description: Earth Engine <https://earthengine.google.com/> client library for R. All
of the 'Earth Engine' API classes, modules, and functions are made available. Additional
functions implemented include importing (exporting) of Earth Engine spatial objects,
extraction of time series, interactive map display, assets management interface,
and metadata display. See <https://r-spatial.github.io/rgee/> for further details.
Author: Cesar Aybar [aut, cre] (<https://orcid.org/0000-0003-2745-9535>),
Wu Qiusheng [ctb] (<https://orcid.org/0000-0001-5437-4073>),
Lesly Bautista [ctb] (<https://orcid.org/0000-0003-3523-8687>),
Roy Yali [ctb] (<https://orcid.org/0000-0003-4542-3755>),
Antony Barja [ctb] (<https://orcid.org/0000-0001-5921-2858>),
Kevin Ushey [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Tim Appelhans [ctb],
JJ Allaire [ctb],
Yuan Tang [ctb],
Samapriya Roy [ctb],
MariaElena Adauto [ctb] (<https://orcid.org/0000-0002-2154-2429>),
Gabriel Carrasco [ctb] (<https://orcid.org/0000-0002-6945-0419>),
Henrik Bengtsson [ctb],
Jeffrey Hollister [rev] (Hollister reviewed the package for JOSS, see
https://github.com/openjournals/joss-reviews/issues/2272/),
Gennadii Donchyts [rev] (Gena reviewed the package for JOSS, see
https://github.com/openjournals/joss-reviews/issues/2272/),
Marius Appel [rev] (Appel reviewed the package for JOSS, see
https://github.com/openjournals/joss-reviews/issues/2272/)
Maintainer: Cesar Aybar <csaybar@gmail.com>
Diff between rgee versions 1.0.8 dated 2021-01-27 and 1.0.9 dated 2021-04-24
rgee-1.0.8/rgee/R/Map.R |only rgee-1.0.8/rgee/man/ee_utils_search_display.Rd |only rgee-1.0.8/rgee/man/null-default.Rd |only rgee-1.0.8/rgee/tests/credentials |only rgee-1.0.9/rgee/DESCRIPTION | 30 rgee-1.0.9/rgee/MD5 | 186 - rgee-1.0.9/rgee/NAMESPACE | 16 rgee-1.0.9/rgee/NEWS.md | 30 rgee-1.0.9/rgee/R/Deprecated.R | 1016 ++++++++++ rgee-1.0.9/rgee/R/Map_operators.R | 95 rgee-1.0.9/rgee/R/R6Map.R |only rgee-1.0.9/rgee/R/ee_Date.R | 17 rgee-1.0.9/rgee/R/ee_Initialize.R | 73 rgee-1.0.9/rgee/R/ee_as_sf.R | 111 - rgee-1.0.9/rgee/R/ee_as_thumbnail.R | 38 rgee-1.0.9/rgee/R/ee_check.R | 2 rgee-1.0.9/rgee/R/ee_clean.R | 90 rgee-1.0.9/rgee/R/ee_download.R | 116 - rgee-1.0.9/rgee/R/ee_extract.R | 265 ++ rgee-1.0.9/rgee/R/ee_get.R | 84 rgee-1.0.9/rgee/R/ee_help.R | 5 rgee-1.0.9/rgee/R/ee_image.R | 76 rgee-1.0.9/rgee/R/ee_imagecollection.R | 29 rgee-1.0.9/rgee/R/ee_install.R | 249 ++ rgee-1.0.9/rgee/R/ee_manage.R | 10 rgee-1.0.9/rgee/R/ee_module.R | 4 rgee-1.0.9/rgee/R/ee_print.R | 50 rgee-1.0.9/rgee/R/ee_utils.R | 341 --- rgee-1.0.9/rgee/R/ee_version.R | 4 rgee-1.0.9/rgee/R/print.R | 1 rgee-1.0.9/rgee/R/rgee-package.R | 250 ++ rgee-1.0.9/rgee/R/sf_as_ee.R | 13 rgee-1.0.9/rgee/R/utils-R6Map.R |only rgee-1.0.9/rgee/R/utils-download.R | 4 rgee-1.0.9/rgee/R/utils-upload.R | 75 rgee-1.0.9/rgee/inst/dataset.json |only rgee-1.0.9/rgee/inst/doc/rgee01.R | 5 rgee-1.0.9/rgee/inst/doc/rgee01.Rmd | 68 rgee-1.0.9/rgee/inst/doc/rgee01.html | 127 - rgee-1.0.9/rgee/inst/doc/rgee02.Rmd | 55 rgee-1.0.9/rgee/inst/doc/rgee02.html | 115 - rgee-1.0.9/rgee/inst/doc/rgee03.Rmd | 63 rgee-1.0.9/rgee/inst/doc/rgee03.html | 131 - rgee-1.0.9/rgee/inst/python/ee_extract.py | 2 rgee-1.0.9/rgee/man/Map.Rd | 30 rgee-1.0.9/rgee/man/Math-methods.Rd |only rgee-1.0.9/rgee/man/Ops-methods.Rd |only rgee-1.0.9/rgee/man/R6Map.Rd |only rgee-1.0.9/rgee/man/Summary-methods.Rd |only rgee-1.0.9/rgee/man/ee.Rd | 4 rgee-1.0.9/rgee/man/ee_Initialize.Rd | 19 rgee-1.0.9/rgee/man/ee_as_raster.Rd | 34 rgee-1.0.9/rgee/man/ee_as_sf.Rd | 50 rgee-1.0.9/rgee/man/ee_as_stars.Rd | 32 rgee-1.0.9/rgee/man/ee_as_thumbnail.Rd | 33 rgee-1.0.9/rgee/man/ee_check-tools.Rd | 2 rgee-1.0.9/rgee/man/ee_clean_container.Rd | 11 rgee-1.0.9/rgee/man/ee_clean_credentials.Rd | 2 rgee-1.0.9/rgee/man/ee_clean_pyenv.Rd | 12 rgee-1.0.9/rgee/man/ee_drive_to_local.Rd | 37 rgee-1.0.9/rgee/man/ee_extract.Rd | 90 rgee-1.0.9/rgee/man/ee_gcs_to_local.Rd | 32 rgee-1.0.9/rgee/man/ee_get.Rd | 10 rgee-1.0.9/rgee/man/ee_get_assethome.Rd | 1 rgee-1.0.9/rgee/man/ee_get_date_ic.Rd | 6 rgee-1.0.9/rgee/man/ee_get_date_img.Rd | 4 rgee-1.0.9/rgee/man/ee_get_earthengine_path.Rd | 2 rgee-1.0.9/rgee/man/ee_image_info.Rd | 10 rgee-1.0.9/rgee/man/ee_image_to_asset.Rd | 10 rgee-1.0.9/rgee/man/ee_image_to_drive.Rd | 23 rgee-1.0.9/rgee/man/ee_image_to_gcs.Rd | 12 rgee-1.0.9/rgee/man/ee_imagecollection_to_local.Rd | 29 rgee-1.0.9/rgee/man/ee_install_set_pyenv.Rd | 28 rgee-1.0.9/rgee/man/ee_length.Rd |only rgee-1.0.9/rgee/man/ee_length_ic.Rd |only rgee-1.0.9/rgee/man/ee_manage-tools.Rd | 10 rgee-1.0.9/rgee/man/ee_monitoring.Rd | 4 rgee-1.0.9/rgee/man/ee_name.Rd |only rgee-1.0.9/rgee/man/ee_print.Rd | 9 rgee-1.0.9/rgee/man/ee_subsetting.Rd |only rgee-1.0.9/rgee/man/ee_utils_create_json.Rd | 4 rgee-1.0.9/rgee/man/ee_utils_create_manifest_image.Rd | 14 rgee-1.0.9/rgee/man/ee_utils_create_manifest_table.Rd | 8 rgee-1.0.9/rgee/man/ee_utils_dataset_display.Rd |only rgee-1.0.9/rgee/man/ee_utils_gif_annotate.Rd | 2 rgee-1.0.9/rgee/man/ee_utils_gif_creator.Rd | 2 rgee-1.0.9/rgee/man/ee_utils_gif_save.Rd | 8 rgee-1.0.9/rgee/man/ee_utils_shp_to_zip.Rd | 6 rgee-1.0.9/rgee/man/eedate_to_rdate.Rd | 13 rgee-1.0.9/rgee/man/gcs_to_ee_image.Rd | 49 rgee-1.0.9/rgee/man/local_to_gcs.Rd | 2 rgee-1.0.9/rgee/man/map-operator.Rd |only rgee-1.0.9/rgee/man/print.ee.computedobject.ComputedObject.Rd | 1 rgee-1.0.9/rgee/man/rdate_to_eedate.Rd | 4 rgee-1.0.9/rgee/man/rgee-package.Rd | 291 ++ rgee-1.0.9/rgee/man/sf_as_ee.Rd | 4 rgee-1.0.9/rgee/tests/testthat/test-ee_extract.R | 56 rgee-1.0.9/rgee/tests/testthat/test-map.R | 81 rgee-1.0.9/rgee/tests/testthat/test-operators.R |only rgee-1.0.9/rgee/vignettes/rgee01.Rmd | 68 rgee-1.0.9/rgee/vignettes/rgee02.Rmd | 55 rgee-1.0.9/rgee/vignettes/rgee03.Rmd | 63 102 files changed, 3573 insertions(+), 1550 deletions(-)