Title: Functions to Work with NCBI Accessions and Taxonomy
Description: Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.
Author: Scott Sherrill-Mix [aut, cre]
Maintainer: Scott Sherrill-Mix <shescott@upenn.edu>
Diff between taxonomizr versions 0.7.1 dated 2021-04-23 and 0.8.0 dated 2021-05-06
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/taxa.R | 20 ++++++-------------- man/getAccession2taxid.Rd | 5 +---- man/getNamesAndNodes.Rd | 5 +---- tests/testthat/test_taxa.R | 7 ------- 6 files changed, 18 insertions(+), 39 deletions(-)
Title: Tools for Exploring Regression Models with 'iNZight'
Description: Provides a suite of functions to use with regression models, including summaries, residual plots, and factor comparisons. Used as part of the Model Fitting module of 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions.
Author: Tom Elliott [aut, cre] (<https://orcid.org/0000-0002-7815-6318>),
Simon Potter [aut],
David Banks [aut],
Danny Chang [ctb]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightRegression versions 1.3.0 dated 2020-11-27 and 1.3.1 dated 2021-05-06
DESCRIPTION | 12 ++++++------ MD5 | 21 +++++++++++---------- NAMESPACE | 1 + R/general.R | 6 +++--- R/inzplot_glm.R |only R/inzplot_lm.R | 9 +++++++++ man/Poly.Rd | 6 +++--- man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/figures/README-example-3.png |binary man/inzplot.lm.Rd | 18 +++++++++++++----- tests/testthat/test_plots.R | 16 ++++++++++++++++ 12 files changed, 62 insertions(+), 27 deletions(-)
More information about iNZightRegression at CRAN
Permanent link
Title: Data Processing after Running 'GGIR' for Accelerometer Data
Description: Generate all necessary R/Rmd/shell files for data processing after running 'GGIR' (v2.0) for accelerometer data. In part 1, all csv files in the GGIR output directory were read, transformed and then merged. In part 2, the GGIR output files were checked and summarized in one excel sheet. In part 3, the merged data was cleaned according to the number of valid hours on each night and the number of valid days for each subject. In part 4, the cleaned activity data was imputed by the average Euclidean norm minus one (ENMO) over all the valid days for each subject. Finally, a comprehensive report of data processing was created using Rmarkdown, and the report includes few exploratory plots and multiple commonly used features extracted from minute level actigraphy data.
Author: Wei Guo [aut, cre],
Vadim Zipunnikov [aut],
Kathleen Merikangas [aut]
Maintainer: Wei Guo <wei.guo3@nih.gov>
Diff between postGGIR versions 1.0.0 dated 2021-03-01 and 2.0.0 dated 2021-05-06
postGGIR-1.0.0/postGGIR/R/IS.R |only postGGIR-1.0.0/postGGIR/R/IV.R |only postGGIR-1.0.0/postGGIR/R/junrui.edit.R |only postGGIR-1.0.0/postGGIR/man/ActCosinor.Rd |only postGGIR-1.0.0/postGGIR/man/ExtCos2.Rd |only postGGIR-1.0.0/postGGIR/man/ExtCos_long2.Rd |only postGGIR-1.0.0/postGGIR/man/IV.Rd |only postGGIR-2.0.0/postGGIR/DESCRIPTION | 11 postGGIR-2.0.0/postGGIR/MD5 | 72 +++-- postGGIR-2.0.0/postGGIR/NAMESPACE | 16 - postGGIR-2.0.0/postGGIR/R/ActCosinor2.R |only postGGIR-2.0.0/postGGIR/R/ActExtendCosinor2.R |only postGGIR-2.0.0/postGGIR/R/IS2.R |only postGGIR-2.0.0/postGGIR/R/IV2.R |only postGGIR-2.0.0/postGGIR/R/RA2.R |only postGGIR-2.0.0/postGGIR/R/Time2.R |only postGGIR-2.0.0/postGGIR/R/Tvol2.R |only postGGIR-2.0.0/postGGIR/R/bin_data2.R |only postGGIR-2.0.0/postGGIR/R/fragmentation2.R |only postGGIR-2.0.0/postGGIR/R/part2_summary.pipeline.R | 1 postGGIR-2.0.0/postGGIR/R/wear_flag.R | 9 postGGIR-2.0.0/postGGIR/build/vignette.rds |binary postGGIR-2.0.0/postGGIR/inst/doc/postGGIR.R | 3 postGGIR-2.0.0/postGGIR/inst/doc/postGGIR.Rmd | 5 postGGIR-2.0.0/postGGIR/inst/doc/postGGIR.html | 116 +++++---- postGGIR-2.0.0/postGGIR/inst/template/part5_postGGIR.report.Rmd | 23 - postGGIR-2.0.0/postGGIR/inst/template/part7a_JIVE_1_featureExtraction.Rmd | 122 ++++------ postGGIR-2.0.0/postGGIR/inst/template/part7b_JIVE_2_featureMerge.Rmd | 26 +- postGGIR-2.0.0/postGGIR/inst/template/part7d_JIVE_4_runJive.Rmd | 7 postGGIR-2.0.0/postGGIR/inst/template/part7e_JIVE_5_somefeatures_weekday.Rmd | 90 ++++--- postGGIR-2.0.0/postGGIR/man/ActCosinor2.Rd |only postGGIR-2.0.0/postGGIR/man/ActCosinor_long2.Rd |only postGGIR-2.0.0/postGGIR/man/ActExtendCosinor2.Rd |only postGGIR-2.0.0/postGGIR/man/ActExtendCosinor_long2.Rd |only postGGIR-2.0.0/postGGIR/man/IS2.Rd |only postGGIR-2.0.0/postGGIR/man/IS_long2.Rd | 28 +- postGGIR-2.0.0/postGGIR/man/IV2.Rd |only postGGIR-2.0.0/postGGIR/man/IV_long2.Rd | 28 +- postGGIR-2.0.0/postGGIR/man/PAfun.Rd |only postGGIR-2.0.0/postGGIR/man/RA2.Rd | 14 - postGGIR-2.0.0/postGGIR/man/RA_long2.Rd | 33 +- postGGIR-2.0.0/postGGIR/man/Time2.Rd | 2 postGGIR-2.0.0/postGGIR/man/Time_long2.Rd | 2 postGGIR-2.0.0/postGGIR/man/Tvol2.Rd | 2 postGGIR-2.0.0/postGGIR/man/bin_data2.Rd |only postGGIR-2.0.0/postGGIR/man/fragmentation2.Rd | 5 postGGIR-2.0.0/postGGIR/man/fragmentation_long2.Rd | 14 - postGGIR-2.0.0/postGGIR/man/wear_flag.Rd | 3 postGGIR-2.0.0/postGGIR/vignettes/postGGIR.Rmd | 5 49 files changed, 364 insertions(+), 273 deletions(-)
Title: Graphics Layers for Plotting Image Data with 'ggplot2'
Description: Provides two new layer types for displaying image data as layers
within the Grammar of Graphics framework. Displays images using either a
rectangle interface, with a fixed bounding box, or a point interface using a
central point and general size parameter. Images can be given as local
JPEG or PNG files, external resources, or as a list column containing
raster image data.
Author: Taylor B. Arnold [aut, cre]
Maintainer: Taylor B. Arnold <taylor.arnold@acm.org>
Diff between ggimg versions 0.1.0 dated 2020-03-20 and 0.1.1 dated 2021-05-06
DESCRIPTION | 11 MD5 | 6 build/vignette.rds |binary inst/doc/package_intro.html | 722 +++++++++++++++++++++----------------------- 4 files changed, 355 insertions(+), 384 deletions(-)
Title: Bayesian Network Structure Learning from Data with Missing
Values
Description: Bayesian Network Structure Learning from Data with Missing Values.
The package implements the Silander-Myllymaki complete search,
the Max-Min Parents-and-Children, the Hill-Climbing, the
Max-Min Hill-climbing heuristic searches, and the Structural
Expectation-Maximization algorithm. Available scoring functions are
BDeu, AIC, BIC. The package also implements methods for generating and using
bootstrap samples, imputed data, inference.
Author: Francesco Sambo [aut],
Alberto Franzin [aut, cre]
Maintainer: Alberto Franzin <afranzin@ulb.ac.be>
Diff between bnstruct versions 1.0.9 dated 2021-03-09 and 1.0.10 dated 2021-05-06
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 1 - NEWS.md | 4 ++++ R/BN-methods.R | 4 ++-- R/beliefPropagation-methods.R | 3 ++- R/buildJunctionTree-methods.R | 2 +- README.md | 2 +- build/vignette.rds |binary inst/doc/bnstruct.Rnw | 2 +- inst/doc/bnstruct.pdf |binary vignettes/bnstruct.Rnw | 2 +- 12 files changed, 28 insertions(+), 24 deletions(-)
Title: Making 'ggplot2' Plots Interactive with 'loon' and Vice Versa
Description: It provides a bridge between the 'loon' and 'ggplot2' packages. Data analysts who value the grammar pipeline provided by 'ggplot2' can turn these static plots into interactive 'loon' plots. Conversely, data analysts who explore data interactively with 'loon' can turn any 'loon' plot into a 'ggplot2' plot structure. The function 'loon.ggplot()' is applied to one plot structure will return the other.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut]
Maintainer: Zehao Xu <z267xu@uwaterloo.ca>
Diff between loon.ggplot versions 1.1.0 dated 2021-03-21 and 1.2.0 dated 2021-05-06
loon.ggplot-1.1.0/loon.ggplot/R/get_loon_plots_info.R |only loon.ggplot-1.1.0/loon.ggplot/R/ggSerialaxes-deprecated.R |only loon.ggplot-1.1.0/loon.ggplot/R/reexports.R |only loon.ggplot-1.1.0/loon.ggplot/man/geom_polygonGlyph-deprecated.Rd |only loon.ggplot-1.1.0/loon.ggplot/man/itemLabel.Rd |only loon.ggplot-1.1.0/loon.ggplot/man/print.lggplot.Rd |only loon.ggplot-1.1.0/loon.ggplot/man/reexports.Rd |only loon.ggplot-1.1.0/loon.ggplot/man/selecting.Rd |only loon.ggplot-1.2.0/loon.ggplot/DESCRIPTION | 14 loon.ggplot-1.2.0/loon.ggplot/MD5 | 150 loon.ggplot-1.2.0/loon.ggplot/NAMESPACE | 36 loon.ggplot-1.2.0/loon.ggplot/R/Cartesianxy2Polarxy.R | 3 loon.ggplot-1.2.0/loon.ggplot/R/add_glyph.R | 2 loon.ggplot-1.2.0/loon.ggplot/R/advanced_loon_layers.R | 1152 +++---- loon.ggplot-1.2.0/loon.ggplot/R/basic_loon_layers.R | 1542 ++++++---- loon.ggplot-1.2.0/loon.ggplot/R/binding.R | 4 loon.ggplot-1.2.0/loon.ggplot/R/deprecated_functions.R | 726 ++++ loon.ggplot-1.2.0/loon.ggplot/R/g_getPlots.R | 14 loon.ggplot-1.2.0/loon.ggplot/R/get_functions.R | 4 loon.ggplot-1.2.0/loon.ggplot/R/get_plotsInfo.R |only loon.ggplot-1.2.0/loon.ggplot/R/get_scaledData.R | 2 loon.ggplot-1.2.0/loon.ggplot/R/ggBuild2Loon.R | 3 loon.ggplot-1.2.0/loon.ggplot/R/ggGraph.R | 2 loon.ggplot-1.2.0/loon.ggplot/R/ggplot2loon_ggmatrix.R | 45 loon.ggplot-1.2.0/loon.ggplot/R/ggplot2loon_ggplot.R | 176 - loon.ggplot-1.2.0/loon.ggplot/R/interactive-ggproto.R | 228 + loon.ggplot-1.2.0/loon.ggplot/R/l_ggplot.R | 34 loon.ggplot-1.2.0/loon.ggplot/R/l_histogram.R | 154 loon.ggplot-1.2.0/loon.ggplot/R/l_loonPlot.R | 9 loon.ggplot-1.2.0/loon.ggplot/R/l_scatterplot.R | 203 - loon.ggplot-1.2.0/loon.ggplot/R/l_serialaxesplot.R | 42 loon.ggplot-1.2.0/loon.ggplot/R/layout_coords.R | 6 loon.ggplot-1.2.0/loon.ggplot/R/loon2ggplot.R | 249 + loon.ggplot-1.2.0/loon.ggplot/R/loon2ggplot_l_compound.R | 4 loon.ggplot-1.2.0/loon.ggplot/R/loon2ggplot_l_layer_graph.R | 6 loon.ggplot-1.2.0/loon.ggplot/R/loon2ggplot_l_layer_histogram.R | 135 loon.ggplot-1.2.0/loon.ggplot/R/loon2ggplot_l_layer_scatterplot.R | 258 - loon.ggplot-1.2.0/loon.ggplot/R/loon2ggplot_l_pairs.R | 4 loon.ggplot-1.2.0/loon.ggplot/R/loon2ggplot_l_serialaxes.R | 83 loon.ggplot-1.2.0/loon.ggplot/R/loon2ggplot_l_ts.R | 4 loon.ggplot-1.2.0/loon.ggplot/R/loonGrob_l_ggplot.R | 209 + loon.ggplot-1.2.0/loon.ggplot/R/loonLikeFuctions.R | 45 loon.ggplot-1.2.0/loon.ggplot/R/loonPlot_configure.R | 76 loon.ggplot-1.2.0/loon.ggplot/R/loon_ggplot.R | 33 loon.ggplot-1.2.0/loon.ggplot/R/modify_loon_plots.R | 110 loon.ggplot-1.2.0/loon.ggplot/R/modify_n_dim_data.R |only loon.ggplot-1.2.0/loon.ggplot/R/pack_layers.R | 31 loon.ggplot-1.2.0/loon.ggplot/R/pack_loon_plots.R | 78 loon.ggplot-1.2.0/loon.ggplot/R/scatterplotAsAes.R |only loon.ggplot-1.2.0/loon.ggplot/R/synchronize.R | 2 loon.ggplot-1.2.0/loon.ggplot/R/unexportedFunctions.R | 8 loon.ggplot-1.2.0/loon.ggplot/R/utils.R | 52 loon.ggplot-1.2.0/loon.ggplot/inst/doc/ggplots2loon.html | 4 loon.ggplot-1.2.0/loon.ggplot/inst/doc/loon2ggplots.html | 4 loon.ggplot-1.2.0/loon.ggplot/inst/doc/pipes.html | 4 loon.ggplot-1.2.0/loon.ggplot/man/active.Rd |only loon.ggplot-1.2.0/loon.ggplot/man/g_getPlots.Rd | 12 loon.ggplot-1.2.0/loon.ggplot/man/geom_imageGlyph-deprecated.Rd | 35 loon.ggplot-1.2.0/loon.ggplot/man/geom_pointrangeGlyph-deprecated.Rd | 9 loon.ggplot-1.2.0/loon.ggplot/man/geom_serialAxesGlyph-deprecated.Rd | 9 loon.ggplot-1.2.0/loon.ggplot/man/geom_textGlyph-deprecated.Rd | 9 loon.ggplot-1.2.0/loon.ggplot/man/ggSerialAxes-deprecated.Rd | 8 loon.ggplot-1.2.0/loon.ggplot/man/ggplot2loon.Rd | 26 loon.ggplot-1.2.0/loon.ggplot/man/hover.Rd |only loon.ggplot-1.2.0/loon.ggplot/man/interactivity.Rd | 32 loon.ggplot-1.2.0/loon.ggplot/man/is.l_ggplot.Rd |only loon.ggplot-1.2.0/loon.ggplot/man/itemLabel-deprecated.Rd |only loon.ggplot-1.2.0/loon.ggplot/man/l_ggplot.Rd | 23 loon.ggplot-1.2.0/loon.ggplot/man/lggplot-deprecated.Rd | 9 loon.ggplot-1.2.0/loon.ggplot/man/linking.Rd | 36 loon.ggplot-1.2.0/loon.ggplot/man/loon.ggplot.Rd | 16 loon.ggplot-1.2.0/loon.ggplot/man/loon2ggplot.Rd | 79 loon.ggplot-1.2.0/loon.ggplot/man/print.l_ggplot.Rd |only loon.ggplot-1.2.0/loon.ggplot/man/selecting-deprecated.Rd |only loon.ggplot-1.2.0/loon.ggplot/man/selection.Rd |only loon.ggplot-1.2.0/loon.ggplot/man/zoom.Rd |only loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_deprecated_functions.R | 2 loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_ggplot2loon_facets.R | 22 loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_ggplot2loon_geometricObjects.R | 11 loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_ggplot2loon_polarCoord.R | 3 loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_ggplot2loon_serialAxesCoord.R | 3 loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_ggplot2loon_themes.R | 39 loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_helper_function.R | 3 loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_inputNDimData.R |only loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_interactive_components.R | 58 loon.ggplot-1.2.0/loon.ggplot/tests/testthat/test_loon2ggplot.R | 56 86 files changed, 3939 insertions(+), 2511 deletions(-)
Title: Visible Vowels: Visualization of Vowel Variation
Description: Visualizes vowel variation in f0, F1, F2, F3 and duration.
Author: Wilbert Heeringa, Hans Van de Velde
Maintainer: Wilbert Heeringa <wjheeringa@gmail.com>
Diff between visvow versions 1.2.0 dated 2021-03-29 and 1.3.0 dated 2021-05-06
DESCRIPTION | 6 - MD5 | 8 +- R/visvow.R | 200 ++++++++++++++++++++++++---------------------------- build/partial.rdb |binary inst/doc/visvow.pdf |binary 5 files changed, 100 insertions(+), 114 deletions(-)
Title: Models for Data from Unmarked Animals
Description: Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates.
Author: Richard Chandler [aut],
Ken Kellner [aut],
Ian Fiske [aut],
David Miller [aut],
Andy Royle [cre, aut],
Jeff Hostetler [aut],
Rebecca Hutchinson [aut],
Adam Smith [aut],
Marc Kery [ctb],
Mike Meredith [ctb],
Auriel Fournier [ctb],
Ariel Muldoon [ctb],
Chris Baker [ctb]
Maintainer: Andy Royle <aroyle@usgs.gov>
Diff between unmarked versions 1.0.1 dated 2020-07-02 and 1.1.0 dated 2021-05-06
unmarked-1.0.1/unmarked/src/init.c |only unmarked-1.0.1/unmarked/src/nll_gdistsamp.h |only unmarked-1.0.1/unmarked/src/nll_gmultmix.h |only unmarked-1.0.1/unmarked/src/nll_gpcount.h |only unmarked-1.0.1/unmarked/src/nll_occuRN.h |only unmarked-1.0.1/unmarked/src/nll_pcount.h |only unmarked-1.1.0/unmarked/DESCRIPTION | 23 unmarked-1.1.0/unmarked/MD5 | 237 ++--- unmarked-1.1.0/unmarked/NAMESPACE | 7 unmarked-1.1.0/unmarked/NEWS | 7 unmarked-1.1.0/unmarked/R/RcppExports.R |only unmarked-1.1.0/unmarked/R/boot.R | 17 unmarked-1.1.0/unmarked/R/colext.R | 3 unmarked-1.1.0/unmarked/R/distsamp.R | 2 unmarked-1.1.0/unmarked/R/distsampOpen.R | 54 - unmarked-1.1.0/unmarked/R/gdistsamp.R | 28 unmarked-1.1.0/unmarked/R/getDesign.R | 126 +- unmarked-1.1.0/unmarked/R/gmultmix.R | 28 unmarked-1.1.0/unmarked/R/gpcount.R | 13 unmarked-1.1.0/unmarked/R/mixedModelTools.R |only unmarked-1.1.0/unmarked/R/multinomPois.R | 4 unmarked-1.1.0/unmarked/R/multmixOpen.R | 32 unmarked-1.1.0/unmarked/R/nmixTTD.R |only unmarked-1.1.0/unmarked/R/occu.R | 239 +++-- unmarked-1.1.0/unmarked/R/occuFP.R | 30 unmarked-1.1.0/unmarked/R/occuMS.R | 45 - unmarked-1.1.0/unmarked/R/occuMulti.R | 17 unmarked-1.1.0/unmarked/R/occuPEN.R | 7 unmarked-1.1.0/unmarked/R/occuRN.R | 24 unmarked-1.1.0/unmarked/R/occuTTD.R | 45 - unmarked-1.1.0/unmarked/R/pcount.R | 199 ++-- unmarked-1.1.0/unmarked/R/pcount.spHDS.R | 14 unmarked-1.1.0/unmarked/R/pcountOpen.R | 1 unmarked-1.1.0/unmarked/R/ranef.R | 97 +- unmarked-1.1.0/unmarked/R/unmarkedEstimate.R | 71 + unmarked-1.1.0/unmarked/R/unmarkedFit.R | 490 ++++++----- unmarked-1.1.0/unmarked/R/unmarkedFitList.R | 4 unmarked-1.1.0/unmarked/R/unmarkedFrame.R | 106 +- unmarked-1.1.0/unmarked/R/utils.R | 16 unmarked-1.1.0/unmarked/build/vignette.rds |binary unmarked-1.1.0/unmarked/inst/CITATION | 4 unmarked-1.1.0/unmarked/inst/doc/cap-recap.Rnw | 2 unmarked-1.1.0/unmarked/inst/doc/cap-recap.pdf |binary unmarked-1.1.0/unmarked/inst/doc/colext.Rnw | 2 unmarked-1.1.0/unmarked/inst/doc/colext.pdf |binary unmarked-1.1.0/unmarked/inst/doc/distsamp.R | 20 unmarked-1.1.0/unmarked/inst/doc/distsamp.Rnw | 1 unmarked-1.1.0/unmarked/inst/doc/distsamp.pdf |binary unmarked-1.1.0/unmarked/inst/doc/spp-dist.R | 18 unmarked-1.1.0/unmarked/inst/doc/spp-dist.Rnw | 1 unmarked-1.1.0/unmarked/inst/doc/spp-dist.pdf |binary unmarked-1.1.0/unmarked/inst/doc/unmarked.R | 24 unmarked-1.1.0/unmarked/inst/doc/unmarked.Rnw | 1 unmarked-1.1.0/unmarked/inst/doc/unmarked.pdf |binary unmarked-1.1.0/unmarked/inst/unitTests/runit.colext.R | 5 unmarked-1.1.0/unmarked/inst/unitTests/runit.distsamp.r | 9 unmarked-1.1.0/unmarked/inst/unitTests/runit.distsampOpen.R | 86 + unmarked-1.1.0/unmarked/inst/unitTests/runit.gdistsamp.R | 52 + unmarked-1.1.0/unmarked/inst/unitTests/runit.gmultmix.R | 56 - unmarked-1.1.0/unmarked/inst/unitTests/runit.gpcount.R | 3 unmarked-1.1.0/unmarked/inst/unitTests/runit.multinomPois.R | 37 unmarked-1.1.0/unmarked/inst/unitTests/runit.multmixOpen.R | 38 unmarked-1.1.0/unmarked/inst/unitTests/runit.nmixTTD.R |only unmarked-1.1.0/unmarked/inst/unitTests/runit.occu.R | 92 +- unmarked-1.1.0/unmarked/inst/unitTests/runit.occuFP.R | 5 unmarked-1.1.0/unmarked/inst/unitTests/runit.occuMS.R | 40 unmarked-1.1.0/unmarked/inst/unitTests/runit.occuMulti.R | 123 ++ unmarked-1.1.0/unmarked/inst/unitTests/runit.occuPEN.R | 15 unmarked-1.1.0/unmarked/inst/unitTests/runit.occuRN.R | 22 unmarked-1.1.0/unmarked/inst/unitTests/runit.occuTTD.R | 130 ++ unmarked-1.1.0/unmarked/inst/unitTests/runit.pcount.R | 100 ++ unmarked-1.1.0/unmarked/inst/unitTests/runit.pcount.spHDS.R | 8 unmarked-1.1.0/unmarked/inst/unitTests/runit.pcountOpen.R | 23 unmarked-1.1.0/unmarked/inst/unitTests/runit.predict.R | 12 unmarked-1.1.0/unmarked/inst/unitTests/runit.unmarkedFrame.R | 43 unmarked-1.1.0/unmarked/man/coef-methods.Rd | 5 unmarked-1.1.0/unmarked/man/fitted-methods.Rd | 1 unmarked-1.1.0/unmarked/man/gdistsamp.Rd | 8 unmarked-1.1.0/unmarked/man/gmultmix.Rd | 8 unmarked-1.1.0/unmarked/man/gpcount.Rd | 7 unmarked-1.1.0/unmarked/man/nmixTTD.Rd |only unmarked-1.1.0/unmarked/man/nonparboot-methods.Rd | 1 unmarked-1.1.0/unmarked/man/occu.Rd | 12 unmarked-1.1.0/unmarked/man/occuRN.Rd | 7 unmarked-1.1.0/unmarked/man/occuTTD.Rd | 2 unmarked-1.1.0/unmarked/man/pcount.Rd | 12 unmarked-1.1.0/unmarked/man/predict-methods.Rd | 1 unmarked-1.1.0/unmarked/man/randomTerms.Rd |only unmarked-1.1.0/unmarked/man/ranef-methods.Rd | 1 unmarked-1.1.0/unmarked/man/sigma.Rd |only unmarked-1.1.0/unmarked/man/simulate-methods.Rd | 1 unmarked-1.1.0/unmarked/man/unmarkedEstimate-class.Rd | 2 unmarked-1.1.0/unmarked/man/unmarkedFit-class.Rd | 58 - unmarked-1.1.0/unmarked/man/unmarkedFrameOccuTTD.Rd | 9 unmarked-1.1.0/unmarked/src/Makevars | 31 unmarked-1.1.0/unmarked/src/Makevars.win | 31 unmarked-1.1.0/unmarked/src/RcppExports.cpp |only unmarked-1.1.0/unmarked/src/TMB |only unmarked-1.1.0/unmarked/src/distr.cpp | 9 unmarked-1.1.0/unmarked/src/distr.h | 4 unmarked-1.1.0/unmarked/src/nll_distsamp.cpp | 2 unmarked-1.1.0/unmarked/src/nll_distsamp.h | 1 unmarked-1.1.0/unmarked/src/nll_distsampOpen.cpp | 56 - unmarked-1.1.0/unmarked/src/nll_distsampOpen.h | 1 unmarked-1.1.0/unmarked/src/nll_gdistsamp.cpp | 160 +-- unmarked-1.1.0/unmarked/src/nll_gmultmix.cpp | 144 +-- unmarked-1.1.0/unmarked/src/nll_gpcount.cpp | 49 - unmarked-1.1.0/unmarked/src/nll_multmixOpen.cpp | 58 - unmarked-1.1.0/unmarked/src/nll_multmixOpen.h | 1 unmarked-1.1.0/unmarked/src/nll_nmixTTD.cpp |only unmarked-1.1.0/unmarked/src/nll_occu.cpp | 14 unmarked-1.1.0/unmarked/src/nll_occu.h | 1 unmarked-1.1.0/unmarked/src/nll_occuPEN.cpp | 4 unmarked-1.1.0/unmarked/src/nll_occuPEN.h | 1 unmarked-1.1.0/unmarked/src/nll_occuRN.cpp | 114 +- unmarked-1.1.0/unmarked/src/nll_occuTTD.cpp | 20 unmarked-1.1.0/unmarked/src/nll_pcount.cpp | 108 +- unmarked-1.1.0/unmarked/src/nll_pcountOpen.cpp | 2 unmarked-1.1.0/unmarked/src/nll_pcountOpen.h | 1 unmarked-1.1.0/unmarked/src/utils.cpp | 16 unmarked-1.1.0/unmarked/src/utils.h | 6 unmarked-1.1.0/unmarked/vignettes/cap-recap.Rnw | 2 unmarked-1.1.0/unmarked/vignettes/colext.Rnw | 2 unmarked-1.1.0/unmarked/vignettes/distsamp.Rnw | 1 unmarked-1.1.0/unmarked/vignettes/spp-dist.Rnw | 1 unmarked-1.1.0/unmarked/vignettes/unmarked.Rnw | 1 126 files changed, 2430 insertions(+), 1504 deletions(-)
Title: Client for 'jq', a 'JSON' Processor
Description: Client for 'jq', a 'JSON' processor (<https://stedolan.github.io/jq/>),
written in C. 'jq' allows the following with 'JSON' data: index into, parse,
do calculations, cut up and filter, change key names and values, perform
conditionals and comparisons, and more.
Author: Rich FitzJohn [aut],
Jeroen Ooms [aut],
Scott Chamberlain [aut, cre],
Stefan Milton Bache [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between jqr versions 1.2.0 dated 2020-11-13 and 1.2.1 dated 2021-05-06
DESCRIPTION | 6 +++--- LICENSE | 4 ++-- MD5 | 13 +++++++------ NEWS.md | 5 +++++ configure | 7 +++---- src/Makevars.ucrt |only src/Makevars.win | 5 +++-- tools/winlibs.R | 5 ++--- 8 files changed, 25 insertions(+), 20 deletions(-)
Title: Rank Aggregation with Partition Mallows Model
Description: Rank aggregation aims to achieve a better ranking list given multiple observations. 'PAMA' implements Partition-Mallows model for rank aggregation where the rankers' quality are different. Both Bayesian inference and Maximum likelihood estimation (MLE) are provided. It can handle partial list as well. When covariates information is available, this package can make inference by incorporating the covariate information. More information can be found in the paper "Integrated Partition-Mallows Model and Its Inference for Rank Aggregation".
Author: Wanchuang Zhu [cre, aut]
Maintainer: Wanchuang Zhu <andy.chou.sub@gmail.com>
Diff between PAMA versions 1.1.0 dated 2021-04-28 and 1.2.0 dated 2021-05-06
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NAMESPACE | 1 + R/PAMA.B.R | 21 ++++++--------------- R/PAMA.likediff2R.R |only R/PAMAlike.R | 5 +++-- R/conditionalranking.R | 2 +- R/logZ.MM.R |only 8 files changed, 22 insertions(+), 27 deletions(-)
Title: Reproducible Reports in Psychology
Description: Helper functions for producing reports in Psychology (Reproducible Research). Provides required formatted strings (APA style) for use in 'Knitr'/'Latex' integration within *.Rnw files.
Author: Ian G Mackenzie [cre, aut],
Carolin Dudschig [aut]
Maintainer: Ian G Mackenzie <ian.mackenzie@uni-tuebingen.de>
Diff between psychReport versions 3.0.0 dated 2021-02-25 and 3.0.1 dated 2021-05-06
DESCRIPTION | 7 +++---- MD5 | 12 ++++++------ R/anova.R | 5 ----- R/utils.R | 31 +++++++++++++++++++------------ man/psychReport-package.Rd | 2 +- tests/testthat/test-mathString.R | 6 ++++++ tests/testthat/test-printTable.R | 6 ++++-- 7 files changed, 39 insertions(+), 30 deletions(-)
Title: Computation and Plots of Influence Functions for Risk and
Performance Measures
Description: Computes the influence functions time series of the returns for the risk and
performance measures as mentioned in Chen and Martin (2018)
<https://www.ssrn.com/abstract=3085672>, as well as in Zhang et al. (2019)
<https://www.ssrn.com/abstract=3415903>. Also evaluates estimators influence
functions at a set of parameter values and plots them to display the shapes of
the influence functions.
Author: Anthony Christidis <anthony.christidis@stat.ubc.ca>,
Shengyu Zhang <syzhang@uw.edu>,
Douglas Martin <doug@amath.washington.edu>
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between RPEIF versions 1.2.0 dated 2021-03-09 and 1.2.1 dated 2021-05-06
RPEIF-1.2.0/RPEIF/man/IF.robLoc.Rd |only RPEIF-1.2.1/RPEIF/DESCRIPTION | 8 +- RPEIF-1.2.1/RPEIF/MD5 | 16 ++-- RPEIF-1.2.1/RPEIF/NAMESPACE | 2 RPEIF-1.2.1/RPEIF/NEWS.md | 3 RPEIF-1.2.1/RPEIF/R/IF_robLoc.R | 56 ++++++++--------- RPEIF-1.2.1/RPEIF/R/InfluenceFunctions.R | 12 +-- RPEIF-1.2.1/RPEIF/R/RiskPerformanceMeasure_Functions.R | 18 ++--- RPEIF-1.2.1/RPEIF/inst/doc/RPEIFVignette.pdf |binary RPEIF-1.2.1/RPEIF/man/IF.robMean.Rd |only 10 files changed, 59 insertions(+), 56 deletions(-)
Title: N-Factor Commodity Pricing Through Term Structure Estimation
Description: Commodity pricing models are (systems of) stochastic differential equations that are utilized for the valuation and hedging of commodity contingent claims (i.e. derivative products on the commodity) and other commodity related investments. Commodity pricing models that capture market dynamics are of great importance to commodity market participants in order to exercise sound investment and risk-management strategies. Parameters of commodity pricing models are estimated through maximum likelihood estimation, using available term structure futures data of a commodity. 'NFCP' (n-factor commodity pricing) provides a framework for the modeling, parameter estimation, probabilistic forecasting, option valuation and simulation of commodity prices through state space and Monte Carlo methods, risk-neutral valuation and Kalman filtering. 'NFCP' allows the commodity pricing model to consist of n correlated factors, with both random walk and mean-reverting elements. The n-factor commodity pricing model framework was first presented in the work of Cortazar and Naranjo (2006) <doi:10.1002/fut.20198>. Examples presented in 'NFCP' replicate the two-factor crude oil commodity pricing model presented in the prolific work of Schwartz and Smith (2000) <doi:10.1287/mnsc.46.7.893.12034> with the approximate term structure futures data applied within this study provided in the 'NFCP' package.
Author: Thomas Aspinall [aut, cre] (<https://orcid.org/0000-0002-6968-1989>),
Adrian Gepp [aut] (<https://orcid.org/0000-0003-1666-5501>),
Geoff Harris [aut] (<https://orcid.org/0000-0003-4284-8619>),
Simone Kelly [aut] (<https://orcid.org/0000-0002-6528-8557>),
Colette Southam [aut] (<https://orcid.org/0000-0001-7263-2347>),
Bruce Vanstone [aut] (<https://orcid.org/0000-0002-3977-2468>)
Maintainer: Thomas Aspinall <tomaspinall2512@gmail.com>
Diff between NFCP versions 1.0.0 dated 2021-05-02 and 1.0.1 dated 2021-05-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/Kalman_filter.R | 2 +- build/NFCP.pdf |binary man/NFCP_Kalman_filter.Rd | 2 +- 6 files changed, 14 insertions(+), 10 deletions(-)
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' for extracting text, fonts, attachments and
metadata from a PDF file. Also supports high quality rendering of PDF documents into
PNG, JPEG, TIFF format, or into raw bitmap vectors for further processing in R.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between pdftools versions 3.0.0 dated 2021-05-05 and 3.0.1 dated 2021-05-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ R/render.R | 2 +- configure | 6 ------ 5 files changed, 11 insertions(+), 14 deletions(-)
Title: R Interface for the 'H2O' Scalable Machine Learning Platform
Description: R interface for 'H2O', the scalable open source machine learning
platform that offers parallelized implementations of many supervised and
unsupervised machine learning algorithms such as Generalized Linear
Models (GLM), Gradient Boosting Machines (including XGBoost), Random Forests,
Deep Neural Networks (Deep Learning), Stacked Ensembles, Naive Bayes,
Generalized Additive Models (GAM), Cox Proportional Hazards, K-Means, PCA,
Word2Vec, as well as a fully automatic machine learning algorithm (H2O AutoML).
Author: Erin LeDell [aut, cre],
Navdeep Gill [aut],
Spencer Aiello [aut],
Anqi Fu [aut],
Arno Candel [aut],
Cliff Click [aut],
Tom Kraljevic [aut],
Tomas Nykodym [aut],
Patrick Aboyoun [aut],
Michal Kurka [aut],
Michal Malohlava [aut],
Ludi Rehak [ctb],
Eric Eckstrand [ctb],
Brandon Hill [ctb],
Sebastian Vidrio [ctb],
Surekha Jadhawani [ctb],
Amy Wang [ctb],
Raymond Peck [ctb],
Wendy Wong [ctb],
Jan Gorecki [ctb],
Matt Dowle [ctb],
Yuan Tang [ctb],
Lauren DiPerna [ctb],
Tomas Fryda [ctb],
H2O.ai [cph, fnd]
Maintainer: Erin LeDell <erin@h2o.ai>
Diff between h2o versions 3.32.0.1 dated 2020-10-17 and 3.32.1.2 dated 2021-05-06
DESCRIPTION | 14 - MD5 | 127 ++++++----- NAMESPACE | 14 + R/automl.R | 83 +++++++ R/classes.R | 15 + R/communication.R | 51 +++- R/connection.R | 68 +++--- R/constants.R | 16 + R/coxph.R | 4 R/coxphutils.R | 1 R/deeplearning.R | 8 R/explain.R | 378 +++++++++++++++++++++++++++++++++- R/export.R | 59 ++++- R/frame.R | 12 - R/gam.R | 73 ++++-- R/gbm.R | 8 R/glm.R | 84 ++++++- R/grid.R | 52 +++- R/import.R | 59 ++++- R/kvstore.R | 56 ++++- R/models.R | 377 ++++++++++++++++++++++++++++++--- R/naivebayes.R | 10 R/parse.R | 36 ++- R/randomforest.R | 8 R/rulefit.R | 9 R/stackedensemble.R | 17 + R/targetencoder.R | 23 +- R/xgboost.R | 21 + inst/branch.txt | 2 inst/buildnum.txt | 2 man/dot-check_for_ggplot2.Rd |only man/dot-plot_varimp.Rd | 4 man/h2o-package.Rd | 6 man/h2o.auc.Rd | 2 man/h2o.deeplearning.Rd | 5 man/h2o.download_model.Rd | 9 man/h2o.drop_duplicates.Rd | 2 man/h2o.exportFile.Rd | 13 - man/h2o.feature_interaction.Rd |only man/h2o.gam.Rd | 26 +- man/h2o.gbm.Rd | 5 man/h2o.getAlphaBest.Rd |only man/h2o.getLambdaBest.Rd |only man/h2o.getLambdaMax.Rd |only man/h2o.getLambdaMin.Rd |only man/h2o.get_best_model.Rd |only man/h2o.get_leaderboard.Rd | 1 man/h2o.glm.Rd | 20 + man/h2o.grid.Rd | 7 man/h2o.importFile.Rd | 16 + man/h2o.learning_curve_plot.Rd |only man/h2o.list_models.Rd |only man/h2o.loadGrid.Rd | 6 man/h2o.load_frame.Rd |only man/h2o.make_metrics.Rd | 5 man/h2o.multinomial_auc_table.Rd |only man/h2o.multinomial_aucpr_table.Rd |only man/h2o.naiveBayes.Rd | 7 man/h2o.parseRaw.Rd | 8 man/h2o.parseSetup.Rd | 8 man/h2o.randomForest.Rd | 5 man/h2o.removeAll.Rd | 6 man/h2o.resume.Rd |only man/h2o.resumeGrid.Rd |only man/h2o.rulefit.Rd | 3 man/h2o.saveGrid.Rd | 13 + man/h2o.saveModel.Rd | 11 man/h2o.save_frame.Rd |only man/h2o.stackedEnsemble.Rd | 10 man/h2o.targetencoder.Rd | 10 man/h2o.xgboost.Rd | 12 - man/predict_contributions.H2OModel.Rd | 18 + 72 files changed, 1651 insertions(+), 274 deletions(-)
Title: Fast Covariance Estimation for Sparse Functional Data
Description: We implement the Fast Covariance Estimation for
Sparse Functional Data paper published in Statistics and Computing <doi: 10.1007/s11222-017-9744-8>.
Author: Luo Xiao [aut], Cai Li [aut,cre], William Checkley [aut], Ciprian Crainiceanu [aut]
Maintainer: Cai Li <cli9@ncsu.edu>
Diff between face versions 0.1-5 dated 2019-01-23 and 0.1-6 dated 2021-05-06
DESCRIPTION | 16 - MD5 | 50 ++-- NAMESPACE | 22 - R/check.data.r | 28 +- R/construct.knots.r | 34 +- R/cor.face.r | 100 ++++---- R/covZ.r | 228 +++++++++---------- R/face.sparse.r | 92 +++---- R/kr.r | 80 +++--- R/matrix.multiply.r | 12 - R/predict.face.sparse.r | 208 ++++++++--------- R/predict.pspline.face.r | 20 - R/pspline.r | 214 +++++++++--------- R/pspline.setting.R | 136 +++++------ R/raw.construct.r | 134 +++++------ R/select.knots.r | 60 ++--- R/weight.construct.r | 136 +++++------ build/partial.rdb |binary man/cor.face.Rd | 88 +++---- man/face-package.Rd | 56 ++-- man/face.sparse.Rd | 512 ++++++++++++++++++++++---------------------- man/internals.Rd | 28 +- man/predict.face.sparse.Rd | 116 ++++----- man/predict.pspline.face.Rd | 86 +++---- man/pspline.Rd | 218 +++++++++--------- man/select.knots.Rd | 88 +++---- 26 files changed, 1381 insertions(+), 1381 deletions(-)
Title: Tools for Antitrust Practitioners
Description: A collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.
Author: Charles Taragin and Michael Sandfort
Maintainer: Charles Taragin <ctaragin@ftc.gov>
Diff between antitrust versions 0.99.14 dated 2020-06-26 and 0.99.25 dated 2021-05-06
antitrust-0.99.14/antitrust/man/Bargaining-Class.Rd |only antitrust-0.99.25/antitrust/DESCRIPTION | 40 antitrust-0.99.25/antitrust/MD5 | 87 antitrust-0.99.25/antitrust/NAMESPACE | 3 antitrust-0.99.25/antitrust/R/Auction2ndLogitFunctions.R | 31 antitrust-0.99.25/antitrust/R/BargainingClasses.R | 60 antitrust-0.99.25/antitrust/R/BargainingLogitFunctions.R |only antitrust-0.99.25/antitrust/R/BertrandRUMClasses.R | 11 antitrust-0.99.25/antitrust/R/CESFunctions.R | 2 antitrust-0.99.25/antitrust/R/CVMethods.R | 17 antitrust-0.99.25/antitrust/R/CostMethods.R | 2 antitrust-0.99.25/antitrust/R/CournotFunctions.R | 10 antitrust-0.99.25/antitrust/R/DiagnosticsMethods.R | 59 antitrust-0.99.25/antitrust/R/DiversionMethods.R | 15 antitrust-0.99.25/antitrust/R/ElastMethods.R | 20 antitrust-0.99.25/antitrust/R/HHIMethods.R | 72 antitrust-0.99.25/antitrust/R/HypoMonMethods.R | 2 antitrust-0.99.25/antitrust/R/LinearFunctions.R | 2 antitrust-0.99.25/antitrust/R/MarginsMethods.R | 64 antitrust-0.99.25/antitrust/R/OutputMethods.R | 36 antitrust-0.99.25/antitrust/R/ParamsMethods.R | 277 + antitrust-0.99.25/antitrust/R/PriceDeltaMethods.R | 63 antitrust-0.99.25/antitrust/R/PricesMethods.R | 95 antitrust-0.99.25/antitrust/R/SimFunctions.R | 88 antitrust-0.99.25/antitrust/R/SummaryMethods.R | 15 antitrust-0.99.25/antitrust/build/partial.rdb |only antitrust-0.99.25/antitrust/inst/doc/Reference.Rmd | 53 antitrust-0.99.25/antitrust/inst/doc/Reference.html | 1765 +---------- antitrust-0.99.25/antitrust/man/Auction2ndLogit-Functions.Rd | 426 +- antitrust-0.99.25/antitrust/man/Bargaining-Classes.Rd |only antitrust-0.99.25/antitrust/man/BargainingLogit-Functions.Rd |only antitrust-0.99.25/antitrust/man/CES-Functions.Rd | 5 antitrust-0.99.25/antitrust/man/Diagnostics-Methods.Rd | 3 antitrust-0.99.25/antitrust/man/Diversion-Methods.Rd | 3 antitrust-0.99.25/antitrust/man/Elast-Methods.Rd | 3 antitrust-0.99.25/antitrust/man/HHI-Methods.Rd | 3 antitrust-0.99.25/antitrust/man/Linear-Functions.Rd | 2 antitrust-0.99.25/antitrust/man/Margins-Methods.Rd | 3 antitrust-0.99.25/antitrust/man/Output-Methods.Rd | 6 antitrust-0.99.25/antitrust/man/Ownership-methods.Rd | 80 antitrust-0.99.25/antitrust/man/Params-Methods.Rd | 3 antitrust-0.99.25/antitrust/man/PriceDelta-Methods.Rd | 24 antitrust-0.99.25/antitrust/man/Prices-Methods.Rd | 3 antitrust-0.99.25/antitrust/man/Sim-Functions.Rd | 26 antitrust-0.99.25/antitrust/man/defineMarketTools-methods.Rd | 2 antitrust-0.99.25/antitrust/vignettes/Reference.Rmd | 53 antitrust-0.99.25/antitrust/vignettes/antitrustbib.bib | 50 47 files changed, 1618 insertions(+), 1966 deletions(-)
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.22 dated 2021-04-24 and 0.0.23 dated 2021-05-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/rankT20Batsmen.R | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
Title: Age-Depth Modelling using Bayesian Statistics
Description: An approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information. See Blaauw & Christen (2011).
Author: Maarten Blaauw [aut, cre],
J. Andres Christen [aut, ctb, cph],
Marco A. Aquino Lopez [aut],
Judith Esquivel Vazquez [ctb],
Oscar M. Gonzalez V. [ctb],
Ted Belding [cph],
James Theiler [cph],
Brian Gough [cph],
Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rbacon versions 2.5.3 dated 2021-03-29 and 2.5.5 dated 2021-05-06
rbacon-2.5.3/rbacon/R/read_write_plum.R |only rbacon-2.5.3/rbacon/man/calib.plumbacon.plot.Rd |only rbacon-2.5.5/rbacon/DESCRIPTION | 8 rbacon-2.5.5/rbacon/MD5 | 32 - rbacon-2.5.5/rbacon/NAMESPACE | 3 rbacon-2.5.5/rbacon/NEWS.md | 8 rbacon-2.5.5/rbacon/R/Bacon.R | 17 - rbacon-2.5.5/rbacon/R/MCMC.R | 48 ++ rbacon-2.5.5/rbacon/R/accrate.R | 42 +- rbacon-2.5.5/rbacon/R/agedepth.R | 111 +++++- rbacon-2.5.5/rbacon/R/calc.R | 5 rbacon-2.5.5/rbacon/R/calibrate.R | 402 ++++++++++++------------ rbacon-2.5.5/rbacon/R/internal_plots.R | 29 + rbacon-2.5.5/rbacon/R/read_write.R | 29 + rbacon-2.5.5/rbacon/build/partial.rdb |binary rbacon-2.5.5/rbacon/man/agedepth.Rd | 17 - rbacon-2.5.5/rbacon/man/background.Rd |only rbacon-2.5.5/rbacon/man/draw.pbmeasured.Rd |only rbacon-2.5.5/rbacon/man/draw.pbmodelled.Rd | 10 19 files changed, 460 insertions(+), 301 deletions(-)
Title: GWR and MGWR with Spatial Autocorrelation
Description: Functions for computing (Mixed) Geographycally Weighted Regression with spatial autocorrelation, Geniaux and Martinetti (2017) <doi:10.1016/j.regsciurbeco.2017.04.001>.
Author: Ghislain Geniaux and Davide Martinetti
Maintainer: Ghislain Geniaux <ghislain.geniaux@inra.fr>
Diff between mgwrsar versions 0.1 dated 2018-05-11 and 0.1-1 dated 2021-05-06
mgwrsar-0.1-1/mgwrsar/DESCRIPTION | 11 mgwrsar-0.1-1/mgwrsar/MD5 | 58 mgwrsar-0.1-1/mgwrsar/R/KNN.R | 2 mgwrsar-0.1-1/mgwrsar/R/MGWRSAR.R | 4 mgwrsar-0.1-1/mgwrsar/R/MGWR_test_bootstrap.R | 2 mgwrsar-0.1-1/mgwrsar/R/bandwidths_MGWRSAR.R | 2 mgwrsar-0.1-1/mgwrsar/R/kernelW_C.R | 2 mgwrsar-0.1-1/mgwrsar/R/plot.mgwrsar.R | 2 mgwrsar-0.1-1/mgwrsar/R/predict.mgwrsar.R | 2 mgwrsar-0.1-1/mgwrsar/R/summary_mgwrsar.R | 2 mgwrsar-0.1-1/mgwrsar/R/zzz.R | 2 mgwrsar-0.1-1/mgwrsar/build/partial.rdb |binary mgwrsar-0.1-1/mgwrsar/build/vignette.rds |binary mgwrsar-0.1-1/mgwrsar/data/mydata.RData |only mgwrsar-0.1-1/mgwrsar/inst/CITATION | 3 mgwrsar-0.1-1/mgwrsar/inst/doc/mgwrsar-basic_examples.R | 38 mgwrsar-0.1-1/mgwrsar/inst/doc/mgwrsar-basic_examples.Rmd | 4 mgwrsar-0.1-1/mgwrsar/inst/doc/mgwrsar-basic_examples.html | 1421 ++++++------- mgwrsar-0.1-1/mgwrsar/man/KNN.Rd | 2 mgwrsar-0.1-1/mgwrsar/man/MGWRSAR.Rd | 2 mgwrsar-0.1-1/mgwrsar/man/bandwidths_mgwrsar.Rd | 2 mgwrsar-0.1-1/mgwrsar/man/kernelW_C.Rd | 2 mgwrsar-0.1-1/mgwrsar/man/mgwrsar-package.Rd | 5 mgwrsar-0.1-1/mgwrsar/man/mgwrsar_bootstrap_test.Rd | 2 mgwrsar-0.1-1/mgwrsar/man/mydata.Rd | 4 mgwrsar-0.1-1/mgwrsar/man/plot_mgwrsar.Rd | 2 mgwrsar-0.1-1/mgwrsar/man/predict_mgwrsar.Rd | 2 mgwrsar-0.1-1/mgwrsar/man/summary_mgwrsar.Rd | 2 mgwrsar-0.1-1/mgwrsar/src/mgwrsar.cpp | 11 mgwrsar-0.1-1/mgwrsar/vignettes/mgwrsar-basic_examples.Rmd | 4 mgwrsar-0.1/mgwrsar/data/data_mgwrsar.RData |only 31 files changed, 837 insertions(+), 758 deletions(-)
Title: Miscellaneous Useful Functions Including LaTeX Tables, Kalman
Filtering and Development Tools
Description: Implementing various things including functions for LaTeX tables,
the Kalman filter, web scraping, development tools, relative risk and odds
ratio.
Author: Benjamin M. Taylor
Maintainer: Benjamin M. Taylor <benjamin.taylor.software@gmail.com>
Diff between miscFuncs versions 1.3 dated 2020-03-05 and 1.5 dated 2021-05-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/latextable.R | 43 +++++++++++++++++++++++++++++-------------- R/roxtext.R | 23 +++++++++++++---------- inst/doc/miscFuncs.pdf |binary man/latextable.Rd | 6 ++++++ man/roxtext.Rd | 4 ++-- 7 files changed, 60 insertions(+), 36 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-29 1.0.2
2020-02-08 1.0.1
2020-01-15 1.0
Title: Interactive Statistical Data Visualization
Description: An extendable toolkit for interactive data visualization and exploration.
Author: Adrian Waddell [aut],
R. Wayne Oldford [aut, cre, ths],
Zehao Xu [ctb],
Martin Gauch [ctb]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon versions 1.3.4 dated 2021-03-16 and 1.3.5 dated 2021-05-06
loon-1.3.4/loon/vignettes/Archive.zip |only loon-1.3.5/loon/DESCRIPTION | 8 loon-1.3.5/loon/MD5 | 62 +++--- loon-1.3.5/loon/NAMESPACE | 4 loon-1.3.5/loon/NEWS.md | 17 + loon-1.3.5/loon/R/as_r_size.R |only loon-1.3.5/loon/R/datasets.R | 2 loon-1.3.5/loon/R/facet_layout.R | 93 +++++---- loon-1.3.5/loon/R/l_facet.R | 95 ++++++--- loon-1.3.5/loon/R/l_pairs.R | 22 +- loon-1.3.5/loon/R/l_toplevel.R | 2 loon-1.3.5/loon/R/l_web.R | 38 ++- loon-1.3.5/loon/R/loonGrob.R | 133 ++++++------- loon-1.3.5/loon/R/loonGrob_l_facet_grid.R |only loon-1.3.5/loon/R/loonGrob_l_facet_wrap.R |only loon-1.3.5/loon/R/loonGrob_l_layer_histogram.R | 10 + loon-1.3.5/loon/R/loonGrob_l_layer_scatterplot.R | 51 +---- loon-1.3.5/loon/R/loonGrob_l_serialaxes.R | 12 + loon-1.3.5/loon/README.md | 14 + loon-1.3.5/loon/inst/doc/introduction.html | 4 loon-1.3.5/loon/inst/doc/logicalQueries.html | 4 loon-1.3.5/loon/inst/doc/teaching-example-smoothing.html | 4 loon-1.3.5/loon/inst/images |only loon-1.3.5/loon/inst/tcl/loon/library/optionDatabase.tcl | 3 loon-1.3.5/loon/man/facet_grid_layout.Rd | 12 - loon-1.3.5/loon/man/facet_wrap_layout.Rd | 12 - loon-1.3.5/loon/man/l_facet.Rd | 12 + loon-1.3.5/loon/man/l_pairs.Rd | 6 loon-1.3.5/loon/man/l_toplevel.Rd | 2 loon-1.3.5/loon/man/l_web.Rd | 31 ++- loon-1.3.5/loon/man/minority.Rd | 2 loon-1.3.5/loon/tests/testthat/test_facets.R | 146 +++++++++++++++ 32 files changed, 536 insertions(+), 265 deletions(-)
Title: Estimation and Inference Methods for Sorted Causal Effects and
Classification Analysis
Description: Implements the estimation and inference methods for sorted causal effects and
classification analysis as in Chernozhukov, Fernandez-Val and Luo (2018) <doi:10.3982/ECTA14415>.
Author: Shuowen Chen [aut, cre],
Victor Chernozhukov [aut],
Ivan Fernandez-Val [aut],
Ye Luo [aut]
Maintainer: Shuowen Chen <swchen@bu.edu>
Diff between SortedEffects versions 1.3.0 dated 2021-04-07 and 1.4.0 dated 2021-05-06
DESCRIPTION | 6 - MD5 | 14 +- NEWS.md | 6 - R/ca.R | 178 ++---------------------------- R/peestimate.R | 260 ++++++++++++++++++++++---------------------- R/spe.R | 86 ++++---------- R/subpop.R | 66 +++-------- inst/doc/SortedEffects.html | 4 8 files changed, 206 insertions(+), 414 deletions(-)