Title: Sensitivity Assessment to Unmeasured Confounding with Multiple
Treatments
Description: A sensitivity analysis approach for unmeasured confounding in observational data with multiple treatments and a binary outcome. This approach derives the general bias formula and provides adjusted causal effect estimates in response to various assumptions about the degree of unmeasured confounding. Nested multiple imputation is embedded within the Bayesian framework to integrate uncertainty about the sensitivity parameters and sampling variability. Bayesian Additive Regression Model (BART) is used for outcome modeling. The causal estimands are the conditional average treatment effects (CATE) based on the risk difference. For more details, see paper: Hu L et al. (2020) A flexible sensitivity analysis approach for unmeasured confounding with a multiple treatments and a binary outcome <arXiv:2012.06093>.
Author: Liangyuan Hu [aut],
Jungang Zou [aut],
Jiayi Ji [aut, cre]
Maintainer: Jiayi Ji <Jiayi.Ji@mountsinai.org>
Diff between SAMTx versions 0.1.0 dated 2021-01-11 and 0.2.0 dated 2021-06-21
DESCRIPTION | 9 +- MD5 | 6 - R/sensitivity_analysis_algorithm.R | 135 +++++++++++++------------------------ man/sensitivity_analysis.Rd | 12 +-- 4 files changed, 64 insertions(+), 98 deletions(-)
Title: Gaussian Parsimonious Clustering Models with Covariates and a
Noise Component
Description: Clustering via parsimonious Gaussian Mixtures of Experts using the MoEClust models introduced by Murphy and Murphy (2020) <doi:10.1007/s11634-019-00373-8>. This package fits finite Gaussian mixture models with a formula interface for supplying gating and/or expert network covariates using a range of parsimonious covariance parameterisations from the GPCM family via the EM/CEM algorithm. Visualisation of the results of such models using generalised pairs plots and the inclusion of an additional noise component is also facilitated. A greedy forward stepwise search algorithm is provided for identifying the optimal model in terms of the number of components, the GPCM covariance parameterisation, and the subsets of gating/expert network covariates.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Thomas Brendan Murphy [ctb] (<https://orcid.org/0000-0002-5668-7046>)
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between MoEClust versions 1.3.3 dated 2021-01-06 and 1.4.0 dated 2021-06-21
DESCRIPTION | 14 MD5 | 58 +-- NAMESPACE | 11 R/Functions.R | 844 +++++++++++++++++++++++++++++++++++----------- R/MoEClust.R | 10 R/Plotting_Functions.R | 243 ++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 3 inst/NEWS.md | 70 +++ inst/doc/MoEClust.R | 40 +- inst/doc/MoEClust.Rmd | 75 ++-- inst/doc/MoEClust.html | 533 +++++++++-------------------- man/MoEClust-package.Rd | 8 man/MoE_clust.Rd | 10 man/MoE_control.Rd | 12 man/MoE_crit.Rd | 2 man/MoE_cstep.Rd | 2 man/MoE_dens.Rd | 2 man/MoE_estep.Rd | 2 man/MoE_gpairs.Rd | 95 +++-- man/MoE_stepwise.Rd | 76 ++-- man/as.Mclust.Rd | 6 man/drop_constants.Rd | 1 man/drop_levels.Rd | 6 man/expert_covar.Rd | 12 man/plot.MoEClust.Rd | 4 man/predict.MoEClust.Rd | 36 + man/predict.MoE_expert.Rd |only man/predict.MoE_gating.Rd |only vignettes/MoEClust.Rmd | 75 ++-- 31 files changed, 1395 insertions(+), 855 deletions(-)
Title: Various Tools and Data for Quantitative Peace Science
Description: These are useful tools and data sets for the study of quantitative
peace science. The goal for this package is to include tools and data sets
for doing original research that mimics well what a user would have to previously
get from a software package that may not be well-sourced or well-supported.
Those software bundles were useful the extent to which they encourage replications
of long-standing analyses by starting the data-generating process from scratch. However,
a lot of the functionality can be done relatively quickly and more transparently
in the R programming language.
Author: Steve Miller [aut, cre] (<https://orcid.org/0000-0003-4072-6263>)
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between peacesciencer versions 0.4.0 dated 2021-05-31 and 0.5.0 dated 2021-06-21
peacesciencer-0.4.0/peacesciencer/R/add_mids.R |only peacesciencer-0.4.0/peacesciencer/data/citations.rda |only peacesciencer-0.4.0/peacesciencer/man/add_mids.Rd |only peacesciencer-0.4.0/peacesciencer/man/citations.Rd |only peacesciencer-0.5.0/peacesciencer/DESCRIPTION | 13 peacesciencer-0.5.0/peacesciencer/MD5 | 135 +- peacesciencer-0.5.0/peacesciencer/NAMESPACE | 4 peacesciencer-0.5.0/peacesciencer/NEWS.md | 33 peacesciencer-0.5.0/peacesciencer/R/add_ccode_to_gw.R |only peacesciencer-0.5.0/peacesciencer/R/add_contiguity.R | 18 peacesciencer-0.5.0/peacesciencer/R/add_cow_mids.R | 2 peacesciencer-0.5.0/peacesciencer/R/add_cow_trade.R | 26 peacesciencer-0.5.0/peacesciencer/R/add_cow_wars.R |only peacesciencer-0.5.0/peacesciencer/R/add_creg_fractionalization.R |only peacesciencer-0.5.0/peacesciencer/R/add_democracy.R | 52 peacesciencer-0.5.0/peacesciencer/R/add_gml_mids.R | 2 peacesciencer-0.5.0/peacesciencer/R/add_gwcode_to_cow.R | 3 peacesciencer-0.5.0/peacesciencer/R/add_minimum_distance.R | 22 peacesciencer-0.5.0/peacesciencer/R/add_peace_years.R | 66 + peacesciencer-0.5.0/peacesciencer/R/add_rugged_terrain.R |only peacesciencer-0.5.0/peacesciencer/R/add_sdp_gdp.R | 42 peacesciencer-0.5.0/peacesciencer/R/add_strategic_rivalries.R |only peacesciencer-0.5.0/peacesciencer/R/add_ucdp_acd.R |only peacesciencer-0.5.0/peacesciencer/R/create_dyadyears.R | 2 peacesciencer-0.5.0/peacesciencer/R/create_statedays.R | 2 peacesciencer-0.5.0/peacesciencer/R/create_stateyears.R | 2 peacesciencer-0.5.0/peacesciencer/R/data.R | 436 ++++++- peacesciencer-0.5.0/peacesciencer/R/filter_prd.R | 88 + peacesciencer-0.5.0/peacesciencer/R/ps_cite.R |only peacesciencer-0.5.0/peacesciencer/R/zzz.R | 4 peacesciencer-0.5.0/peacesciencer/README.md | 594 ++++++---- peacesciencer-0.5.0/peacesciencer/build/partial.rdb |binary peacesciencer-0.5.0/peacesciencer/data/cow_ddy.rda |binary peacesciencer-0.5.0/peacesciencer/data/cow_gw_years.rda |binary peacesciencer-0.5.0/peacesciencer/data/cow_mid_ddydisps.rda |binary peacesciencer-0.5.0/peacesciencer/data/cow_mid_dirdisps.rda |binary peacesciencer-0.5.0/peacesciencer/data/cow_nmc.rda |binary peacesciencer-0.5.0/peacesciencer/data/cow_sdp_gdp.rda |binary peacesciencer-0.5.0/peacesciencer/data/cow_trade_ndy.rda |only peacesciencer-0.5.0/peacesciencer/data/cow_war_inter.rda |only peacesciencer-0.5.0/peacesciencer/data/cow_war_intra.rda |only peacesciencer-0.5.0/peacesciencer/data/creg.rda |only peacesciencer-0.5.0/peacesciencer/data/gml_dirdisp.rda |binary peacesciencer-0.5.0/peacesciencer/data/gml_mid_ddydisps.rda |binary peacesciencer-0.5.0/peacesciencer/data/gw_cow_years.rda |only peacesciencer-0.5.0/peacesciencer/data/gw_sdp_gdp.rda |binary peacesciencer-0.5.0/peacesciencer/data/gwcode_democracy.rda |only peacesciencer-0.5.0/peacesciencer/data/hief.rda |only peacesciencer-0.5.0/peacesciencer/data/ps_bib.rda |only peacesciencer-0.5.0/peacesciencer/data/rugged.rda |only peacesciencer-0.5.0/peacesciencer/data/td_rivalries.rda |only peacesciencer-0.5.0/peacesciencer/data/ucdp_acd.rda |binary peacesciencer-0.5.0/peacesciencer/inst |only peacesciencer-0.5.0/peacesciencer/man/add_ccode_to_gw.Rd |only peacesciencer-0.5.0/peacesciencer/man/add_contiguity.Rd | 18 peacesciencer-0.5.0/peacesciencer/man/add_cow_trade.Rd | 10 peacesciencer-0.5.0/peacesciencer/man/add_cow_wars.Rd |only peacesciencer-0.5.0/peacesciencer/man/add_creg_fractionalization.Rd |only peacesciencer-0.5.0/peacesciencer/man/add_democracy.Rd | 8 peacesciencer-0.5.0/peacesciencer/man/add_gwcode_to_cow.Rd | 3 peacesciencer-0.5.0/peacesciencer/man/add_minimum_distance.Rd | 11 peacesciencer-0.5.0/peacesciencer/man/add_peace_years.Rd | 19 peacesciencer-0.5.0/peacesciencer/man/add_rugged_terrain.Rd |only peacesciencer-0.5.0/peacesciencer/man/add_sdp_gdp.Rd | 26 peacesciencer-0.5.0/peacesciencer/man/add_strategic_rivalries.Rd |only peacesciencer-0.5.0/peacesciencer/man/add_ucdp_acd.Rd |only peacesciencer-0.5.0/peacesciencer/man/cow_ddy.Rd | 6 peacesciencer-0.5.0/peacesciencer/man/cow_gw_years.Rd | 14 peacesciencer-0.5.0/peacesciencer/man/cow_igo_ndy.Rd | 2 peacesciencer-0.5.0/peacesciencer/man/cow_igo_sy.Rd | 2 peacesciencer-0.5.0/peacesciencer/man/cow_sdp_gdp.Rd | 1 peacesciencer-0.5.0/peacesciencer/man/cow_trade_ndy.Rd |only peacesciencer-0.5.0/peacesciencer/man/cow_war_inter.Rd |only peacesciencer-0.5.0/peacesciencer/man/cow_war_intra.Rd |only peacesciencer-0.5.0/peacesciencer/man/creg.Rd |only peacesciencer-0.5.0/peacesciencer/man/filter_prd.Rd | 16 peacesciencer-0.5.0/peacesciencer/man/gml_mid_ddydisps.Rd | 2 peacesciencer-0.5.0/peacesciencer/man/gw_cow_years.Rd |only peacesciencer-0.5.0/peacesciencer/man/gw_sdp_gdp.Rd | 1 peacesciencer-0.5.0/peacesciencer/man/gw_states.Rd | 2 peacesciencer-0.5.0/peacesciencer/man/gwcode_democracy.Rd |only peacesciencer-0.5.0/peacesciencer/man/hief.Rd |only peacesciencer-0.5.0/peacesciencer/man/ps_bib.Rd |only peacesciencer-0.5.0/peacesciencer/man/ps_cite.Rd |only peacesciencer-0.5.0/peacesciencer/man/rugged.Rd |only peacesciencer-0.5.0/peacesciencer/man/td_rivalries.Rd |only peacesciencer-0.5.0/peacesciencer/man/ucdp_acd.Rd | 4 peacesciencer-0.5.0/peacesciencer/tests/testthat/test_nodamnduplicates.R | 15 88 files changed, 1264 insertions(+), 442 deletions(-)
Title: Elastic Functional Data Analysis
Description: Performs alignment, PCA, and modeling of multidimensional and
unidimensional functions using the square-root velocity framework
(Srivastava et al., 2011 <arXiv:1103.3817> and
Tucker et al., 2014 <DOI:10.1016/j.csda.2012.12.001>). This framework
allows for elastic analysis of functional data through phase and
amplitude separation.
Author: J. Derek Tucker <jdtuck@sandia.gov>
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>
Diff between fdasrvf versions 1.9.6 dated 2021-05-07 and 1.9.7 dated 2021-06-21
DESCRIPTION | 8 ++--- MD5 | 60 +++++++++++++++++++------------------- NEWS | 5 ++- R/elastic_lpcr_regression.R | 8 ++--- R/elastic_mlpcr_regression.R | 8 ++--- R/elastic_pcr_regression.R | 8 ++--- R/function_group_warp_bayes.R | 2 - R/horizFPCA.R | 20 ++++++------ R/joint_gauss_model.R | 2 - R/jointfPCA.R | 6 +-- R/pair_align_functions.R | 2 - R/pair_align_functions_bayes.R | 2 - R/predict.lpcr.R | 4 +- R/predict.mlpcr.R | 4 +- R/tolerance.R | 2 - R/utility_functions.R | 4 +- R/vertFPCA.R | 8 ++--- README.md | 2 - man/elastic.lpcr.regression.Rd | 8 ++--- man/elastic.mlpcr.regression.Rd | 8 ++--- man/elastic.pcr.regression.Rd | 8 ++--- man/function_group_warp_bayes.Rd | 2 - man/horizFPCA.Rd | 4 +- man/jointFPCA.Rd | 6 +-- man/joint_gauss_model.Rd | 2 - man/pair_align_functions.Rd | 2 - man/pair_align_functions_bayes.Rd | 2 - man/pcaTB.Rd | 2 - man/predict.lpcr.Rd | 4 +- man/predict.mlpcr.Rd | 4 +- man/vertFPCA.Rd | 10 +++++- 31 files changed, 115 insertions(+), 102 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative workflows for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible workflows concisely and compactly.
The methods in this package were influenced by the 'drake' R package
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Samantha Oliver [rev] (<https://orcid.org/0000-0001-5668-1165>),
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between tarchetypes versions 0.2.0 dated 2021-05-11 and 0.2.1 dated 2021-06-21
DESCRIPTION | 6 - MD5 | 115 ++++++++++++++------------ NAMESPACE | 12 ++ NEWS.md | 13 ++ R/tar_combine.R | 52 ----------- R/tar_combine_raw.R | 52 +++++++++++ R/tar_files_raw.R | 2 R/tar_map.R | 16 +++ R/tar_rep.R | 9 +- R/tar_rep_map.R |only R/tar_rep_map_raw.R |only R/tar_rep_raw.R | 31 ++++--- R/tar_select_names.R |only R/tar_select_targets.R |only R/utils_batch.R |only R/utils_language.R | 10 ++ man/tar_age.Rd | 34 +------ man/tar_change.Rd | 124 +--------------------------- man/tar_combine.Rd | 126 ++-------------------------- man/tar_combine_raw.Rd | 126 ++-------------------------- man/tar_download.Rd | 34 +------ man/tar_files.Rd | 34 +------ man/tar_files_input.Rd | 34 +------ man/tar_files_input_raw.Rd | 34 +------ man/tar_files_raw.Rd | 34 +------ man/tar_force.Rd | 124 +--------------------------- man/tar_formats.Rd | 34 +------ man/tar_group_by.Rd | 126 ++-------------------------- man/tar_group_count.Rd | 126 ++-------------------------- man/tar_group_select.Rd | 126 ++-------------------------- man/tar_group_size.Rd | 126 ++-------------------------- man/tar_knit.Rd | 34 +------ man/tar_knit_raw.Rd | 34 +------ man/tar_map.Rd | 7 + man/tar_render.Rd | 39 ++------ man/tar_render_raw.Rd | 39 ++------ man/tar_render_rep.Rd | 129 ++--------------------------- man/tar_render_rep_raw.Rd | 39 ++------ man/tar_rep.Rd | 135 +++--------------------------- man/tar_rep_map.Rd |only man/tar_rep_map_raw.Rd |only man/tar_rep_map_run.Rd |only man/tar_rep_raw.Rd | 137 +++---------------------------- man/tar_select_names.Rd |only man/tar_select_targets.Rd |only man/tar_skip.Rd | 124 +--------------------------- tests/testthat/test-tar_age.R | 17 ++- tests/testthat/test-tar_change.R | 8 - tests/testthat/test-tar_cue_age.R | 22 +++- tests/testthat/test-tar_cue_force.R | 8 + tests/testthat/test-tar_cue_skip.R | 12 ++ tests/testthat/test-tar_files.R | 1 tests/testthat/test-tar_files_input.R | 5 - tests/testthat/test-tar_hook_before.R | 7 + tests/testthat/test-tar_hook_inner.R | 21 +++- tests/testthat/test-tar_hook_outer.R | 7 + tests/testthat/test-tar_knit.R | 4 tests/testthat/test-tar_knit_raw.R | 8 + tests/testthat/test-tar_map.R | 18 +++- tests/testthat/test-tar_render.R | 8 + tests/testthat/test-tar_render_raw.R | 8 + tests/testthat/test-tar_render_rep.R | 1 tests/testthat/test-tar_rep_map.R |only tests/testthat/test-tar_select_names.R |only tests/testthat/test-tar_select_targets.R |only 65 files changed, 522 insertions(+), 1910 deletions(-)
Title: Data on the States and Counties of the United States
Description: Demographic data on the United States at the county and state levels spanning multiple years.
Author: Mine Çetinkaya-Rundel [aut, cre]
(<https://orcid.org/0000-0001-6452-2420>),
David Diez [aut],
Leah Dorazio [aut]
Maintainer: Mine Çetinkaya-Rundel <cetinkaya.mine@gmail.com>
Diff between usdata versions 0.1.0 dated 2020-06-30 and 0.2.0 dated 2021-06-21
DESCRIPTION | 17 +++++++--- MD5 | 31 ++++++++++++------- NEWS.md | 5 +++ R/data-county_2019.R |only R/data-county_complete.R | 53 ++++++++++++++++++++++++++++++++-- R/data-houserace10.R | 2 - R/data-vote_nsa.R | 2 - R/data-voter_count.R |only README.md | 8 ++--- data/county_2019.rda |only data/county_complete.rda |binary data/voter_count.rda |only man/county_2019.Rd |only man/county_complete.Rd | 53 ++++++++++++++++++++++++++++++++-- man/houserace10.Rd | 2 - man/usdata-package.Rd | 1 man/vote_nsa.Rd | 2 - man/voter_count.Rd |only tests/testthat/test-county_2019.R |only tests/testthat/test-county_complete.R | 4 +- 20 files changed, 146 insertions(+), 34 deletions(-)
Title: Transformation-Free Linear Regression for Compositional Outcomes
and Predictors
Description: Implements the expectation-maximization (EM) algorithm as described in Fiksel et al. (2021) <doi:10.1111/biom.13465>
for transformation-free linear regression for compositional outcomes and predictors.
Author: Jacob Fiksel [aut, cre] (<https://orcid.org/0000-0001-7067-1334>),
Abhirup Datta [aut]
Maintainer: Jacob Fiksel <jfiksel@gmail.com>
Diff between codalm versions 0.1.0 dated 2020-06-25 and 0.1.1 dated 2021-06-21
DESCRIPTION | 32 ++++++------- MD5 | 31 ++++++------- NAMESPACE | 1 NEWS.md | 4 + R/codalm_em.R | 54 ++++++++++++++++------- R/independence_test.R | 15 +++--- README.md | 8 +++ inst/doc/codalm_quickstart.R | 22 ++++----- inst/doc/codalm_quickstart.Rmd | 34 ++++++-------- inst/doc/codalm_quickstart.html | 74 ++++++++++++-------------------- man/codalm.Rd | 15 ++---- man/codalm_ci.Rd | 13 ++--- man/codalm_indep_test.Rd | 13 ++--- man/predict_codalm.Rd |only tests/testthat/test-codalm_ci.R | 6 +- tests/testthat/test-independence_test.R | 7 +-- vignettes/codalm_quickstart.Rmd | 34 ++++++-------- 17 files changed, 181 insertions(+), 182 deletions(-)
Title: Load and Process Passive Acoustic Data
Description: Tools for loading and processing passive acoustic data. Read in data
that has been processed in 'Pamguard' (<https://www.pamguard.org/>), apply a suite
processing functions, and export data for reports or external modeling tools. Parameter
calculations implement methods by Oswald et al (2007) <doi:10.1121/1.2743157>,
Griffiths et al (2020) <doi:10.1121/10.0001229> and Baumann-Pickering et al (2010)
<doi:10.1121/1.3479549>.
Author: Taiki Sakai [aut, cre],
Jay Barlow [ctb],
Emily Griffiths [ctb],
Michael Oswald [ctb],
Simone Baumann-Pickering [ctb],
Julie Oswald [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>
Diff between PAMpal versions 0.9.14 dated 2020-12-17 and 0.13.0 dated 2021-06-21
DESCRIPTION | 6 MD5 | 163 ++-- NAMESPACE | 435 ++++++------ NEWS.md | 181 +++++ R/AllClass.R | 625 +++++++++--------- R/AllGetSet.R | 3 R/PAMpalSettings.R | 85 +- R/addDatabase.R | 14 R/addFunction.R | 15 R/addGps.R | 24 R/addHydrophoneDepth.R |only R/addRecordings.R | 69 + R/addSettings.R |only R/calculateAverageSpectra.R | 458 +++++++++++-- R/calculateICI.R | 60 + R/calculateModuleData.R | 102 ++ R/checkStudy.R | 232 +++--- R/data.R | 110 +-- R/export_banter.R | 11 R/filter.R | 60 + R/getBinaryData.R | 23 R/getDetectorData.R | 3 R/getWarnings.R |only R/loadPamguardXML.R |only R/matchEnvData.R | 273 +++---- R/plotDataExplorer.R | 182 ++--- R/plotGram.R |only R/plotWaveform.R | 281 ++++---- R/processPgDetections.R | 467 ++++++++++--- R/removeBinaries.R | 94 +- R/removeCalibration.R | 162 ++-- R/removeDatabase.R | 82 +- R/removeFunction.R | 118 +-- R/removeSettings.R |only R/roccaWhistleCalcs.R | 2 R/setSpecies.R | 88 +- R/standardCepstrumCalcs.R | 74 +- R/standardClickCalcs.R | 43 - R/updateFiles.R | 3 R/updatePamObject.R |only R/utils.R | 427 +++++++----- R/writeEventClips.R | 81 +- R/writeWignerData.R | 2 R/zzz.R |only data/exStudy.rda |binary inst/extdata/Example.sqlite3 |binary inst/extdata/Example.xml |only man/AcousticEvent-class.Rd | 70 +- man/PAMpal.accessors.Rd | 502 +++++++------- man/PAMpalSettings-class.Rd | 67 + man/PAMpalSettings.Rd | 78 +- man/addFunction.Rd | 4 man/addGps.Rd | 160 ++-- man/addHydrophoneDepth.Rd |only man/addRecordings.Rd | 96 +- man/addSettings.Rd |only man/calculateAverageSpectra.Rd | 185 +++-- man/calculateICI.Rd | 166 ++-- man/calculateModuleData.Rd | 73 +- man/checkStudy.Rd | 102 +- man/exStudy.Rd | 36 - man/export_banter.Rd | 140 ++-- man/filter.Rd | 102 +- man/getBinaryData.Rd | 86 +- man/getDetectorData.Rd | 108 +-- man/getWarnings.Rd |only man/is.PAMpalSettings.Rd | 28 man/loadPamguardXML.Rd |only man/matchEnvData.Rd | 162 ++-- man/plotDataExplorer.Rd | 80 +- man/plotGram.Rd |only man/plotWaveform.Rd | 111 +-- man/processPgDetections.Rd | 22 man/removeSettings.Rd |only man/roccaWhistleCalcs.Rd | 62 - man/setSpecies.Rd | 134 +-- man/standardCepstrumCalcs.Rd | 62 - man/standardClickCalcs.Rd | 122 +-- man/testCeps.Rd | 44 - man/testClick.Rd | 52 - man/testWhistle.Rd | 40 - man/updateFiles.Rd | 124 +-- man/updatePamObject.Rd |only man/writeEventClips.Rd | 123 +-- man/writeWignerData.Rd | 114 +-- tests/testthat/2021-02-26_14-53-04_GroupingData.Rdata |only tests/testthat/test-accessors.R | 76 +- tests/testthat/test-paramCalcs.R | 60 - tests/testthat/test-pps.R | 94 +- tests/testthat/test-processPps.R | 31 tests/testthat/test-workStudy.R | 40 - 91 files changed, 4960 insertions(+), 3654 deletions(-)
Title: NHS Data Dictionary Toolset for NHS Lookups
Description: Providing a common set of simplified web scraping tools for working with the NHS Data Dictionary <https://datadictionary.nhs.uk/data_elements_overview.html>.
The intended usage is to access the data elements section of the NHS Data Dictionary to access key lookups.
The benefits of having it in this package are that the lookups are the live lookups on the website and will not need to be maintained.
This package was commissioned by the NHS-R community <https://nhsrcommunity.com/> to provide this consistency of lookups.
The OpenSafely lookups have now been added <https://www.opencodelists.org/docs/>.
Author: Gary Hutson [aut, cre] (<https://orcid.org/0000-0003-3534-6143>),
Calum Polwart [aut],
Tom Jemmett [aut] (<https://orcid.org/0000-0002-6943-2990>)
Maintainer: Gary Hutson <g.hutson@nhs.net>
Diff between NHSDataDictionaRy versions 1.2.3 dated 2021-05-05 and 1.2.4 dated 2021-06-21
DESCRIPTION | 25 ++--- MD5 | 26 ++--- NAMESPACE | 1 NEWS.md | 2 R/linkScrapeR.R | 12 +- R/nhs_data_elements.R | 2 R/nhs_table_findeR.R |only R/openSafely_listR.R | 6 - inst/doc/introduction.R | 8 + inst/doc/introduction.Rmd | 18 ++- inst/doc/introduction.html | 212 +++++++++++++++++++++++++-------------------- man/linkScrapeR.Rd | 2 man/nhs_table_findeR.Rd |only man/openSafely_listR.Rd | 6 - vignettes/introduction.Rmd | 18 ++- 15 files changed, 197 insertions(+), 141 deletions(-)
More information about NHSDataDictionaRy at CRAN
Permanent link
Title: Chinese Name Database 1930-2008
Description: A database of Chinese surnames and Chinese given names (1930-2008).
This database contains nationwide frequency statistics of
1,806 Chinese surnames and 2,614 Chinese characters used in given names,
covering about 1.2 billion Han Chinese population
(96.8% of the Han Chinese household-registered population
born from 1930 to 2008 and still alive in 2008).
This package also contains a function for computing multiple features of
Chinese surnames and Chinese given names for scientific research (e.g.,
name uniqueness, name gender, name valence, and name warmth/competence).
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between ChineseNames versions 1.0.0 dated 2021-04-01 and 1.1.0 dated 2021-06-21
DESCRIPTION | 8 +- MD5 | 11 ++- NAMESPACE | 1 NEWS.md |only R/ChineseNames.R | 150 ++++++++++++++++++++++------------------------------ README.md | 4 - man/ChineseNames.Rd | 2 7 files changed, 80 insertions(+), 96 deletions(-)
Title: Broadly Useful Convenient and Efficient R Functions
Description: Broadly useful convenient and efficient R functions
that bring users concise and elegant R data analyses.
This package includes easy-to-use functions for
(1) basic R programming
(e.g., set working directory to where the current file is,
print strings with rich formats and colors);
(2) multivariate computation
(e.g., compute scale sums/means/... with reverse scoring);
(3) reliability and factor analyses;
(4) descriptive statistics and correlation analyses;
(5) multi-factor analysis of variance (ANOVA),
simple-effect analysis, and post-hoc multiple comparison;
(6) tidy report of regression models and other results
(to R Console and MS Word);
(7) mediation and moderation analyses (PROCESS);
and (8) additional toolbox for statistics and graphics.
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between bruceR versions 0.7.0 dated 2021-05-28 and 0.7.2 dated 2021-06-21
DESCRIPTION | 17 +++++++------- MD5 | 50 ++++++++++++++++++++++---------------------- NEWS.md | 12 ++++++++++ R/bruceR_basic.R | 21 +++++++++--------- R/bruceR_stats_01_basic.R | 20 ++++++++++------- R/bruceR_stats_03_manova.R | 8 +++---- R/bruceR_stats_04_regress.R | 22 ++++++++++--------- R/bruceR_stats_05_advance.R | 29 ++++++++++++++----------- build/partial.rdb |binary man/Corr.Rd | 5 ++-- man/Describe.Rd | 5 ++-- man/EMMEANS.Rd | 5 ++-- man/Freq.Rd | 4 +-- man/GLM_summary.Rd | 11 +++++++-- man/HLM_ICC_rWG.Rd | 5 ++-- man/HLM_summary.Rd | 5 ++-- man/MANOVA.Rd | 5 ++-- man/PROCESS.Rd | 5 ++-- man/dtime.Rd | 4 +-- man/formatF.Rd | 4 +-- man/lavaan_summary.Rd | 5 ++-- man/med_summary.Rd | 4 +-- man/model_summary.Rd | 7 +++--- man/p.Rd | 5 ++-- man/print_table.Rd | 5 ++-- man/regress.Rd | 5 +++- 26 files changed, 156 insertions(+), 112 deletions(-)
Title: Staged Event Trees
Description: Creates and fits staged event tree probability models,
which are probabilistic graphical models capable of representing
asymmetric conditional independence statements
for categorical variables.
Includes functions to create, plot and fit staged
event trees from data, as well as many efficient structure
learning algorithms.
References:
Collazo R. A., Görgen C. and Smith J. Q.
(2018, ISBN:9781498729604).
Görgen C., Bigatti A., Riccomagno E. and Smith J. Q. (2018)
<arXiv:1705.09457>.
Thwaites P. A., Smith, J. Q. (2017) <arXiv:1510.00186>.
Barclay L. M., Hutton J. L. and Smith J. Q. (2013)
<doi:10.1016/j.ijar.2013.05.006>.
Smith J. Q. and Anderson P. E. (2008)
<doi:10.1016/j.artint.2007.05.004>.
Author: Gherardo Varando [aut, cre] (<https://orcid.org/0000-0002-6708-1103>),
Federico Carli [aut],
Manuele Leonelli [aut] (<https://orcid.org/0000-0002-2562-5192>),
Eva Riccomagno [aut]
Maintainer: Gherardo Varando <gherardo.varando@gmail.com>
Diff between stagedtrees versions 2.1.0 dated 2021-04-22 and 2.2.0 dated 2021-06-21
DESCRIPTION | 8 MD5 | 54 +++- NAMESPACE | 13 + NEWS.md | 17 + R/10-comparison-functions.R |only R/1b-base-model-function.R | 234 -------------------- R/2-plot-functions.R | 158 ++++++++++--- R/3-inference-functions.R | 299 +++++++++++++++++++++++++- R/6-sampling-functions.R | 3 R/9-search-order.R |only README.md | 339 +++++++++++++++--------------- man/cid.Rd |only man/compare_stages.Rd | 2 man/confint.sevt.Rd |only man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-21-1.png |binary man/figures/README-unnamed-chunk-22-1.png |binary man/figures/README-unnamed-chunk-23-1.png |binary man/figures/README-unnamed-chunk-24-1.png |only man/figures/README-unnamed-chunk-25-1.png |only man/lr_test.Rd |only man/plot.ceg.Rd |only man/plot.sevt.Rd | 12 - man/prob.Rd | 41 +++ man/search_best.Rd |only man/search_greedy.Rd |only man/sevt_add.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test_cid.R |only tests/testthat/test_confint.R |only tests/testthat/test_inference.R | 100 +++++++- tests/testthat/test_order_search.R |only tests/testthat/test_plot.R | 44 +++ tests/testthat/test_sampling.R | 8 35 files changed, 837 insertions(+), 495 deletions(-)
Title: Average Bioequivalence with Expanding Limits (ABEL)
Description: Performs comparative bioavailability calculations for Average Bioequivalence with
Expanding Limits (ABEL). Implemented are 'Method A' and 'Method B' and the detection of outliers.
If the design allows, assessment of the empiric Type I Error and iteratively adjusting alpha to
control the consumer risk.
Average Bioequivalence - optionally with a tighter (narrow therapeutic index drugs) or wider
acceptance range (Gulf Cooperation Council, South Africa: Cmax) - is implemented as well.
Author: Helmut Schütz [aut, cre] (<https://orcid.org/0000-0002-1167-7880>),
Michael Tomashevskiy [ctb],
Detlew Labes [ctb] (<https://orcid.org/0000-0003-2169-426X>)
Maintainer: Helmut Schütz <helmut.schuetz@bebac.at>
Diff between replicateBE versions 1.0.17 dated 2021-05-14 and 1.1.0 dated 2021-06-21
replicateBE-1.0.17/replicateBE/man/figures/README-example2-1.png |only replicateBE-1.1.0/replicateBE/DESCRIPTION | 35 replicateBE-1.1.0/replicateBE/MD5 | 38 replicateBE-1.1.0/replicateBE/NAMESPACE | 4 replicateBE-1.1.0/replicateBE/NEWS.md | 16 replicateBE-1.1.0/replicateBE/R/ABE.R | 19 replicateBE-1.1.0/replicateBE/R/CV.calc.R | 174 +- replicateBE-1.1.0/replicateBE/R/method.A.R | 58 replicateBE-1.1.0/replicateBE/R/method.B.R | 110 - replicateBE-1.1.0/replicateBE/README.md | 740 +++++---- replicateBE-1.1.0/replicateBE/build/partial.rdb |binary replicateBE-1.1.0/replicateBE/build/vignette.rds |binary replicateBE-1.1.0/replicateBE/inst/doc/vignette.R | 96 - replicateBE-1.1.0/replicateBE/inst/doc/vignette.Rmd | 195 +- replicateBE-1.1.0/replicateBE/inst/doc/vignette.html | 749 +++++----- replicateBE-1.1.0/replicateBE/man/ABE.Rd | 19 replicateBE-1.1.0/replicateBE/man/figures/README-example3-1.png |only replicateBE-1.1.0/replicateBE/man/method.A.Rd | 42 replicateBE-1.1.0/replicateBE/man/method.B.Rd | 55 replicateBE-1.1.0/replicateBE/tests/testthat/testthat.R | 128 - replicateBE-1.1.0/replicateBE/vignettes/vignette.Rmd | 195 +- 21 files changed, 1577 insertions(+), 1096 deletions(-)
More information about antaresEditObject at CRAN
Permanent link
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] (Reviews the documentation),
Florian De Boissieu [ctb] (Fixed bugs and improved catalog features),
Andrew Sánchez Meador [ctb] (Implemented wing2015() for
segment_snags()),
Bourdon Jean-François [ctb] (Contributed to Roussel2020() for
track_sensor()),
Gatziolis Demetrios [ctb] (Implemented Gatziolis2019() for
track_sensor()),
Leon Steinmeier [ctb] (Contributed to parallelization management)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between lidR versions 3.1.3 dated 2021-05-20 and 3.1.4 dated 2021-06-21
DESCRIPTION | 8 ++--- MD5 | 34 ++++++++++++------------ NEWS.md | 14 ++++++++++ R/algorithm-itd.R | 18 +++++++------ R/algorithm-its.R | 4 ++ R/catalog_apply.R | 8 ++--- R/clusters_apply.R | 11 +++++--- R/delineate_crowns.R | 6 ++++ R/grid_terrain.R | 2 - R/plot.s3.R | 45 +++++---------------------------- R/segment_trees.R | 3 ++ R/voxel_metrics.R | 21 ++++++--------- man/catalog_apply.Rd | 10 +++---- man/manual.Rd | 11 +++++--- man/plot.lasmetrics3d.Rd | 24 ++--------------- man/watershed.Rd | 4 ++ tests/testthat/Rplots.pdf |binary tests/testthat/test-delineate_crowns.R | 6 ++++ 18 files changed, 111 insertions(+), 118 deletions(-)
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor modifications)
to correct bias in quantitative DNA methylation analyses as described
by Moskalev et al. (2011) <doi:10.1093/nar/gkr213>. Publication:
Kapsner et al. (2021) <doi:10.1002/ijc.33681>.
Author: Lorenz A. Kapsner [cre, aut, cph]
(<https://orcid.org/0000-0003-1866-860X>),
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.3.0 dated 2021-05-17 and 0.3.1 dated 2021-06-21
DESCRIPTION | 6 MD5 | 14 +- README.md | 188 ++++++++++++++--------------- build/partial.rdb |binary inst/CITATION | 64 ++++----- inst/doc/rBiasCorrection_benchmarking.html | 4 inst/doc/rBiasCorrection_howto.html | 12 - tests/testthat/test-plotting.R | 2 8 files changed, 145 insertions(+), 145 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: Steve's R Markdown Templates
Description: These are my collection of 'R Markdown' templates, mostly for compilation to PDF.
These are useful for all things academic and professional, if you are using 'R Markdown'
for things like your CV or your articles and manuscripts.
Author: Steven V. Miller
Maintainer: Steven V. Miller <steven.v.miller@gmail.com>
Diff between stevetemplates versions 0.5.0 dated 2021-04-13 and 0.6.0 dated 2021-06-21
stevetemplates-0.5.0/stevetemplates/tests/testthat/test-renders.R |only stevetemplates-0.6.0/stevetemplates/DESCRIPTION | 8 - stevetemplates-0.6.0/stevetemplates/MD5 | 29 +++- stevetemplates-0.6.0/stevetemplates/NEWS.md |only stevetemplates-0.6.0/stevetemplates/R/beamer.R |only stevetemplates-0.6.0/stevetemplates/R/cover_letter.R |only stevetemplates-0.6.0/stevetemplates/R/syllabus.R |only stevetemplates-0.6.0/stevetemplates/R/word.R | 2 stevetemplates-0.6.0/stevetemplates/README.md | 62 +++++----- stevetemplates-0.6.0/stevetemplates/inst/rmarkdown/templates/beamer |only stevetemplates-0.6.0/stevetemplates/inst/rmarkdown/templates/cover_letter |only stevetemplates-0.6.0/stevetemplates/inst/rmarkdown/templates/cv/resources/template.tex | 7 - stevetemplates-0.6.0/stevetemplates/inst/rmarkdown/templates/cv/skeleton/skeleton.Rmd | 3 stevetemplates-0.6.0/stevetemplates/inst/rmarkdown/templates/syllabus |only stevetemplates-0.6.0/stevetemplates/man/beamer.Rd |only stevetemplates-0.6.0/stevetemplates/man/cover_letter.Rd |only stevetemplates-0.6.0/stevetemplates/man/syllabus.Rd |only stevetemplates-0.6.0/stevetemplates/tests/testthat/test-exists.R | 16 ++ 18 files changed, 85 insertions(+), 42 deletions(-)
More information about stevetemplates at CRAN
Permanent link
Title: Piece-Wise Exponential Additive Mixed Modeling Tools for
Survival Analysis
Description: The Piece-wise exponential (Additive Mixed) Model
(PAMM; Bender and others (2018) <doi: 10.1177/1471082X17748083>) is a
powerful model class for the analysis of survival (or time-to-event) data,
based on Generalized Additive (Mixed) Models (GA(M)Ms). It offers intuitive specification and robust estimation of complex survival models with stratified baseline hazards, random effects, time-varying effects, time-dependent covariates and cumulative effects (Bender and others (2019)), as well as support for left-truncated, competing risks and recurrent events data.
pammtools provides tidy workflow for survival analysis with PAMMs,
including data simulation, transformation and other functions for data
preprocessing and model post-processing as well as visualization.
Author: Andreas Bender [aut, cre] (<https://orcid.org/0000-0001-5628-8611>),
Fabian Scheipl [aut] (<https://orcid.org/0000-0001-8172-3603>),
Philipp Kopper [aut] (<https://orcid.org/0000-0002-5037-7135>)
Maintainer: Andreas Bender <andreas.bender@stat.uni-muenchen.de>
Diff between pammtools versions 0.5.6 dated 2021-03-29 and 0.5.7 dated 2021-06-21
DESCRIPTION | 10 +++++----- MD5 | 8 +++++--- NEWS.md | 2 ++ R/data.R | 14 ++++++++++++++ data/staph.rda |only man/staph.Rd |only 6 files changed, 26 insertions(+), 8 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.9.2 dated 2020-07-07 and 1.9.3 dated 2021-06-21
DESCRIPTION | 12 MD5 | 122 +- NAMESPACE | 4 NEWS | 28 R/Contlcmm.R | 34 R/Jointlcmm.R | 93 +- R/Ordlcmm.R | 30 R/cuminc.R | 15 R/gridsearch.R | 2 R/hlme.R | 73 + R/lcmm-package.R | 1 R/lcmm.R | 2 R/mpjlcmm.R | 14 R/multlcmm.R | 49 - R/plot.predictY.R | 2 R/plotfit.R | 4 R/predictClass.R |only R/predictRE.R |only R/predictY.hlme.R | 1005 ++++++++++++----------- R/predictY.lcmm.R | 25 R/summaryplot.R |only R/summarytable.R | 61 + R/update.mpjlcmm.R | 22 THANKS | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/introduction.html | 4 inst/doc/latent_class_model_with_hlme.R | 8 inst/doc/latent_class_model_with_hlme.Rmd | 16 inst/doc/latent_class_model_with_hlme.html | 51 - inst/doc/latent_process_model_with_lcmm.html | 8 inst/doc/latent_process_model_with_multlcmm.html | 10 inst/doc/pre_normalizing.html | 4 inst/doc/usual_problems.R | 28 inst/doc/usual_problems.Rmd | 83 + inst/doc/usual_problems.html | 252 +++++ man/Jointlcmm.Rd | 94 +- man/cuminc.Rd | 5 man/data_hlme.Rd | 6 man/data_lcmm.Rd | 6 man/dynpred.Rd | 14 man/epoce.Rd | 11 man/hlme.Rd | 27 man/lcmm.Rd | 35 man/mpjlcmm.Rd | 30 man/multlcmm.Rd | 74 + man/paquid.Rd | 6 man/plot.Rd | 32 man/plot.cuminc.Rd | 11 man/plot.dynpred.Rd | 3 man/plot.predict.Rd | 19 man/predictClass.Rd |only man/predictRE.Rd |only man/predictY.Rd | 83 + man/predictYcond.Rd | 11 man/summaryplot.Rd |only man/summarytable.Rd | 25 src/Jointhet.f90 | 40 src/hetmixCont.f90 | 37 src/hetmixContMult.f90 | 37 src/hetmixOrd.f90 | 37 src/hetmixlin.f90 | 13 src/mpjhet.f90 | 17 vignettes/latent_class_model_with_hlme.Rmd | 16 vignettes/usual_problems.Rmd | 83 + 65 files changed, 2008 insertions(+), 833 deletions(-)
Title: Processing Regional Statistics
Description: Validating sub-national statistical typologies, re-coding across
standard typologies of sub-national statistics, and making valid aggregate
level imputation, re-aggregation, re-weighting and projection down to
lower hierarchical levels to create meaningful data panels and time series.
Author: Daniel Antal [aut, cre] (<https://orcid.org/0000-0001-7513-6760>),
Kasia Kulma [ctb] (<https://orcid.org/0000-0002-2952-9720>),
Istvan Zsoldos [ctb] (<https://orcid.org/0000-0001-5712-2103>),
Leo Lahti [ctb] (<https://orcid.org/0000-0001-5537-637X>)
Maintainer: Daniel Antal <daniel.antal@ceemid.eu>
Diff between regions versions 0.1.7 dated 2021-06-16 and 0.1.8 dated 2021-06-21
DESCRIPTION | 7 +- MD5 | 73 ++++++++++++------------ NAMESPACE | 1 NEWS.md | 64 ++++++++++----------- R/assertions.R | 66 ++++++++++++++++++++- R/data-all_valid_nuts_codes.R | 2 R/data-nuts_exceptions.R |only R/impute_down_nuts.R | 17 +---- R/recode_nuts.R | 24 ++++--- R/utils.R | 34 ----------- R/validate_geo_code.R | 24 ++----- R/validate_nuts_regions.R | 47 +++++++-------- README.md | 64 ++++++++++++++------- data/nuts_exceptions.rda |only inst/doc/Regional_stats.R | 6 + inst/doc/Regional_stats.Rmd | 35 +++++++++++ inst/doc/Regional_stats.html | 61 ++++++++++++++++++++ inst/doc/mapping.R | 13 +++- inst/doc/mapping.Rmd | 60 +++++++++++++++++-- inst/doc/mapping.html | 127 ++++++++++++++++++++++++++++++++++++++++-- inst/doc/recode.R | 3 inst/doc/recode.Rmd | 26 ++++++++ inst/doc/recode.html | 97 +++++++++++++++++++++----------- inst/doc/validation.R | 9 +- inst/doc/validation.Rmd | 31 ++++++++-- inst/doc/validation.html | 39 +++++++++++- man/all_valid_nuts_codes.Rd | 2 man/impute_down_nuts.Rd | 2 man/nuts_exceptions.Rd |only man/validate_data_frame.Rd | 23 ++++++- man/validate_geo_code.Rd | 2 man/validate_nuts_regions.Rd | 2 man/validate_param.Rd | 2 man/validate_parameters.Rd | 2 man/validate_typology.Rd | 2 vignettes/Regional_stats.Rmd | 35 +++++++++++ vignettes/mapping.Rmd | 60 +++++++++++++++++-- vignettes/recode.Rmd | 26 ++++++++ vignettes/validation.Rmd | 31 ++++++++-- 39 files changed, 854 insertions(+), 265 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
Description: Utilities for managing egocentrically sampled network data and a wrapper around the 'ergm' package to facilitate ERGM inference and simulation from such data. See Krivitsky and Morris (2017) <doi:10.1214/16-AOAS1010>.
Author: Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>),
Steven M. Goodreau [ctb],
Martina Morris [ctb],
Kirk Li [ctb],
Emily N. Beylerian [ctb],
Michał Bojanowski [ctb] (<https://orcid.org/0000-0001-7503-852X>),
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <p.krivitsky@unsw.edu.au>
Diff between ergm.ego versions 0.6.1 dated 2020-11-19 and 0.9.0 dated 2021-06-21
ergm.ego-0.6.1/ergm.ego/R/egodata.R |only ergm.ego-0.6.1/ergm.ego/R/locator.R |only ergm.ego-0.6.1/ergm.ego/R/reweight.egodata.R |only ergm.ego-0.6.1/ergm.ego/R/summary.statistics.egodata.R |only ergm.ego-0.6.1/ergm.ego/README.md |only ergm.ego-0.6.1/ergm.ego/man/as.egodata.network.Rd |only ergm.ego-0.6.1/ergm.ego/man/as.network.egodata.Rd |only ergm.ego-0.6.1/ergm.ego/man/degreedist.egodata.Rd |only ergm.ego-0.6.1/ergm.ego/man/egodata.Rd |only ergm.ego-0.6.1/ergm.ego/man/mixingmatrix.egodata.Rd |only ergm.ego-0.6.1/ergm.ego/man/subset.egodata.Rd |only ergm.ego-0.6.1/ergm.ego/man/summary_formula.egodata.Rd |only ergm.ego-0.6.1/ergm.ego/tests/EgoStat.tests.R |only ergm.ego-0.6.1/ergm.ego/tests/boot_jack.R |only ergm.ego-0.6.1/ergm.ego/tests/table_ppop.R |only ergm.ego-0.9.0/ergm.ego/DESCRIPTION | 22 ergm.ego-0.9.0/ergm.ego/LICENSE | 2 ergm.ego-0.9.0/ergm.ego/MD5 | 104 - ergm.ego-0.9.0/ergm.ego/NAMESPACE | 39 ergm.ego-0.9.0/ergm.ego/R/EgoStat.R | 860 +++++----- ergm.ego-0.9.0/ergm.ego/R/EgoStat.duration.R | 28 ergm.ego-0.9.0/ergm.ego/R/EgoStat.node.attr.R | 169 + ergm.ego-0.9.0/ergm.ego/R/InitErgmTerm.R | 36 ergm.ego-0.9.0/ergm.ego/R/control.ergm.ego.R | 48 ergm.ego-0.9.0/ergm.ego/R/control.simulate.ergm.ego.R | 31 ergm.ego-0.9.0/ergm.ego/R/degreedist.R | 97 - ergm.ego-0.9.0/ergm.ego/R/egor.R |only ergm.ego-0.9.0/ergm.ego/R/ergm.ego.R | 171 + ergm.ego-0.9.0/ergm.ego/R/fmhfit.R |only ergm.ego-0.9.0/ergm.ego/R/gof.ergm.ego.R | 127 + ergm.ego-0.9.0/ergm.ego/R/predict.ergmego.R | 12 ergm.ego-0.9.0/ergm.ego/R/reweight.egor.R |only ergm.ego-0.9.0/ergm.ego/R/simulate.ergm.ego.R | 66 ergm.ego-0.9.0/ergm.ego/R/summary.ergm.ego.R | 10 ergm.ego-0.9.0/ergm.ego/R/summary.statistics.egor.R |only ergm.ego-0.9.0/ergm.ego/R/zzz.R | 53 ergm.ego-0.9.0/ergm.ego/build/ergm.ego.pdf |only ergm.ego-0.9.0/ergm.ego/build/partial.rdb |binary ergm.ego-0.9.0/ergm.ego/data |only ergm.ego-0.9.0/ergm.ego/inst/CITATION | 10 ergm.ego-0.9.0/ergm.ego/inst/NEWS.Rd | 77 ergm.ego-0.9.0/ergm.ego/man/EgoStat-internal.Rd |only ergm.ego-0.9.0/ergm.ego/man/as.egor.egodata.Rd |only ergm.ego-0.9.0/ergm.ego/man/as.egor.network.Rd |only ergm.ego-0.9.0/ergm.ego/man/control.ergm.ego.Rd | 24 ergm.ego-0.9.0/ergm.ego/man/control.simulate.ergm.ego.Rd | 8 ergm.ego-0.9.0/ergm.ego/man/degreedist.egor.Rd |only ergm.ego-0.9.0/ergm.ego/man/ergm.ego-terms.Rd | 69 ergm.ego-0.9.0/ergm.ego/man/ergm.ego.Rd | 63 ergm.ego-0.9.0/ergm.ego/man/fmhfit.Rd |only ergm.ego-0.9.0/ergm.ego/man/gof.ergm.ego.Rd | 29 ergm.ego-0.9.0/ergm.ego/man/mixingmatrix.egor.Rd |only ergm.ego-0.9.0/ergm.ego/man/nodal_attributes-API.Rd | 51 ergm.ego-0.9.0/ergm.ego/man/sample.Rd |only ergm.ego-0.9.0/ergm.ego/man/simulate.ergm.ego.Rd | 29 ergm.ego-0.9.0/ergm.ego/man/snctrl.Rd |only ergm.ego-0.9.0/ergm.ego/man/summary_formula.egor.Rd |only ergm.ego-0.9.0/ergm.ego/man/template_network.Rd |only ergm.ego-0.9.0/ergm.ego/man/times-.svystat.Rd |only ergm.ego-0.9.0/ergm.ego/src |only ergm.ego-0.9.0/ergm.ego/tests/testthat.R | 13 ergm.ego-0.9.0/ergm.ego/tests/testthat/test-EgoStat.R |only ergm.ego-0.9.0/ergm.ego/tests/testthat/test-boot_jack.R |only ergm.ego-0.9.0/ergm.ego/tests/testthat/test-coef_recovery.R |only ergm.ego-0.9.0/ergm.ego/tests/testthat/test-degreedist.R | 93 - ergm.ego-0.9.0/ergm.ego/tests/testthat/test-drop.R | 17 ergm.ego-0.9.0/ergm.ego/tests/testthat/test-gof.ergm.ego.R |only ergm.ego-0.9.0/ergm.ego/tests/testthat/test-mixingmatrix.R |only ergm.ego-0.9.0/ergm.ego/tests/testthat/test-netsize.adj.R |only ergm.ego-0.9.0/ergm.ego/tests/testthat/test-predict.ergm.ego.R | 14 ergm.ego-0.9.0/ergm.ego/tests/testthat/test-statmismatch.R | 20 ergm.ego-0.9.0/ergm.ego/tests/testthat/test-table_ppop.R |only 72 files changed, 1464 insertions(+), 928 deletions(-)
Title: Bioequivalence Study Data Analysis
Description: Analyze bioequivalence study data with industrial strength. Sample size could be determined for various crossover designs, such as 2x2 design, 2x4 design, 4x4 design, Balaam design, Two-sequence dual design, and William design.
Reference: Chow SC, Liu JP. Design and Analysis of Bioavailability and Bioequivalence Studies. 3rd ed. (2009, ISBN:978-1-58488-668-6).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between BE versions 0.1.2 dated 2020-09-27 and 0.1.3 dated 2021-06-21
DESCRIPTION | 8 ++++---- MD5 | 44 ++++++++++++++++++++++---------------------- R/be2x2.R | 4 ++-- R/powmse.R | 6 +++--- R/test2x2.R | 7 +++---- inst/NEWS.Rd | 12 ++++++++++++ inst/doc/BE-manual.pdf |binary man/BE-package.Rd | 22 ++-------------------- man/be2x2.Rd | 4 ++-- man/ci2cv.Rd | 2 +- man/ci2mse.Rd | 2 +- man/cv2mse.Rd | 2 +- man/hodges.Rd | 2 +- man/mse2cv.Rd | 2 +- man/plot2x2.Rd | 2 +- man/pow2x2ci.Rd | 2 +- man/pow2x2mse.Rd | 2 +- man/powcv.Rd | 22 ++++++++++------------ man/powmse.Rd | 22 ++++++++++------------ man/ss2x2ci.Rd | 2 +- man/sscv.Rd | 22 ++++++++++------------ man/ssmse.Rd | 24 +++++++++++------------- man/test2x2.Rd | 6 +++--- 23 files changed, 103 insertions(+), 118 deletions(-)
Title: Plot Positive and Negative Predictive Values for Medical Tests
Description: Functions to plot and help understand positive and negative predictive values (PPV and NPV), and their relationship with sensitivity, specificity, and prevalence. See Akobeng, A.K. (2007) <doi:10.1111/j.1651-2227.2006.00180.x> for a theoretical overview of the technical concepts and Navarrete et al. (2015) for a practical explanation about the importance of their understanding <doi:10.3389/fpsyg.2015.01327>.
Author: Gorka Navarrete [aut, cre] (<https://orcid.org/0000-0001-7678-8656>)
Maintainer: Gorka Navarrete <gorkang@gmail.com>
Diff between BayesianReasoning versions 0.3.2 dated 2020-07-03 and 0.3.3 dated 2021-06-21
DESCRIPTION | 9 MD5 | 38 +- NEWS.md | 19 - R/PPV_heatmap.R | 22 - R/helper_functions.R | 8 R/min_possible_prevalence.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/PPV_NPV.Rmd | 6 inst/doc/PPV_NPV.html | 306 +++-------------- inst/doc/introduction.html | 342 ++++--------------- man/PPV_heatmap.Rd | 22 - man/figures/PPV_heatmap/NPV_800_1000_80_5_en.png |binary man/figures/PPV_heatmap/PPV_1_1000_100_2_en.png |binary man/figures/PPV_heatmap/PPV_1_1200_81_5_area_en.png |binary man/figures/PPV_heatmap/PPV_1_1200_81_5_line_en.png |binary man/figures/PPV_heatmap/PPV_1_1800_90_15_line_en.png |binary man/min_possible_prevalence.Rd | 2 tests/testthat/test-PPV_heatmap.R | 18 - vignettes/PPV_NPV.Rmd | 6 20 files changed, 230 insertions(+), 574 deletions(-)
More information about BayesianReasoning at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-22 2.1.0
2020-05-10 2.0.9
2018-09-13 2.0.8
2017-10-06 2.0.7
2017-09-22 2.0.6
2017-09-14 2.0.5
2016-04-13 2.0.4
2016-04-01 2.0.3
2016-03-24 2.0.2
2015-12-27 2.0.1
2014-04-14 1.0.1
2014-01-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-12 1.2
2018-10-22 1.1
2018-10-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-26 0.3.1
Title: Antares Visualizations
Description: Visualize results generated by Antares, a powerful open source software
developed by RTE to simulate and study electric power systems
(more information about 'Antares' here: <https://github.com/AntaresSimulatorTeam/Antares_Simulator>).
This package provides functions that create interactive charts to help
'Antares' users visually explore the results of their simulations.
Author: Veronique Bachelier [aut, cre],
Jalal-Edine Zawam [aut],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Paul Plessiez [aut],
Baptiste Seguinot [ctb],
RTE [cph]
Maintainer: Veronique Bachelier <veronique.bachelier@rte-france.com>
Diff between antaresViz versions 0.15.4 dated 2021-01-12 and 0.16 dated 2021-06-21
DESCRIPTION | 9 MD5 | 98 +-- NEWS.md | 6 R/leafletDragPoints.R | 24 R/map.R | 55 + R/map_helpers.R | 12 R/plot.R | 24 R/plot_barplot.R | 3 R/plot_stats.R | 3 R/plot_ts.R | 3 R/plot_utils.R | 2 R/stack.R | 7 R/stack_aliases.R | 8 R/stack_exchanges.R | 271 ++++---- R/stack_prod.R | 30 README.md | 6 build/vignette.rds |binary inst/application/global.R | 2 inst/application/server.R | 6 inst/application/src/scripts/directoryInput.R | 9 inst/application/src/server/01_set_read_data.R | 69 +- inst/application/src/server/02_load_data.R | 40 + inst/application/src/server/05_modules.R | 229 ++++--- inst/application/src/server/06_module_map.R | 70 +- inst/application/src/server/08_language.R | 6 inst/application/src/ui/01_ui_import_data.R | 25 inst/application/src/ui/02_ui_read_data.R | 1 inst/application/src/ui/04_ui_analysis.R | 39 - inst/doc/antaresViz.html | 490 ++++----------- inst/language_columns.csv | 6 inst/language_labels.csv | 7 man/addShadows.Rd | 58 - man/exchangesStack.Rd | 386 +++++------ man/mapLayout.Rd | 130 ++-- man/modRpart.Rd | 46 - man/modXY.Rd | 54 - man/placeGeoPoints-shiny.Rd | 60 - man/plot.mapLayout.Rd | 266 ++++---- man/plotMap.Rd | 492 +++++++-------- man/plotMapLayout.Rd | 62 - man/plotMapOptions.Rd | 360 +++++------ man/plotThermalGroupCapacities.Rd | 58 - man/plotXY.Rd | 104 +-- man/prodStack.Rd | 542 ++++++++-------- man/savePlotAsPng.Rd | 70 +- man/setInteractivity.Rd | 54 - man/stackMap.Rd | 54 - man/tsLegend.Rd | 142 ++-- man/tsPlot.Rd | 808 ++++++++++++------------- tests/testthat/test-plotMap.R | 391 ++++++------ 50 files changed, 2897 insertions(+), 2800 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that
the user is probably willing to make: 'import()' and 'export()' determine
the data structure from the file extension, reasonable defaults are used for
data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is
natively supported (including from SSL/HTTPS), compressed files can be read
directly without explicit decompression, and fast import packages are used where
appropriate. An additional convenience function, 'convert()', provides a simple
method for converting between file types.
Author: Jason Becker [ctb],
Chung-hong Chan [aut] (<https://orcid.org/0000-0002-6232-7530>),
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>),
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb],
Stanislaus Stadlmann [ctb],
Ruaridh Williamson [ctb],
Patrick Kennedy [ctb],
Ryan Price [ctb],
Trevor L Davis [ctb],
Nathan Day [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Alex Bokov [ctb] (<https://orcid.org/0000-0002-0511-9815>)
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.5.26 dated 2021-03-01 and 0.5.27 dated 2021-06-21
DESCRIPTION | 13 MD5 | 20 NEWS.md | 5 R/gather_attrs.R | 12 R/import_list.R | 2 README.md | 447 ++++++++++-------- build/vignette.rds |binary inst/doc/rio.html | 1281 ---------------------------------------------------- man/gather_attrs.Rd | 12 man/import_list.Rd | 2 po/R-rio.pot | 4 11 files changed, 315 insertions(+), 1483 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2021) <arXiv:2106.04997>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>),
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michał Bojanowski [ctb],
Ben Bolker [ctb],
Christian Schmid [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 4.0.0 dated 2021-06-14 and 4.0.1 dated 2021-06-21
ergm-4.0.0/ergm/README.md |only ergm-4.0.0/ergm/man/symmetrize.Rd |only ergm-4.0.1/ergm/DESCRIPTION | 8 - ergm-4.0.1/ergm/MD5 | 57 ++++++-------- ergm-4.0.1/ergm/NAMESPACE | 9 +- ergm-4.0.1/ergm/R/InitErgmTerm.auxnet.R | 2 ergm-4.0.1/ergm/R/InitErgmTerm.operator.R | 42 +++++----- ergm-4.0.1/ergm/R/ergmlhs.R | 23 +++++ ergm-4.0.1/ergm/R/zzz.R | 2 ergm-4.0.1/ergm/build/ergm.pdf |binary ergm-4.0.1/ergm/build/partial.rdb |binary ergm-4.0.1/ergm/inst/CITATION | 4 ergm-4.0.1/ergm/inst/NEWS.Rd | 40 +++++++++ ergm-4.0.1/ergm/inst/doc/ergm-term-crossRef.html | 30 +++---- ergm-4.0.1/ergm/inst/doc/ergm.pdf |binary ergm-4.0.1/ergm/inst/doc/nodal_attributes.html | 4 ergm-4.0.1/ergm/inst/include/ergm_changestat_operator.h | 3 ergm-4.0.1/ergm/inst/include/ergm_changestats_auxnet.h | 23 ----- ergm-4.0.1/ergm/inst/include/ergm_unsorted_edgelist.h | 41 +++++----- ergm-4.0.1/ergm/inst/include/ergm_wtchangestat_operator.h | 3 ergm-4.0.1/ergm/man/ergm-terms.Rd | 2 ergm-4.0.1/ergm/man/ergm_symmetrize.Rd |only ergm-4.0.1/ergm/man/ergmlhs.Rd | 15 +++ ergm-4.0.1/ergm/src/changestats_auxnet.c | 6 - ergm-4.0.1/ergm/src/edgetree.c | 10 ++ ergm-4.0.1/ergm/src/model.c | 4 ergm-4.0.1/ergm/src/wtmodel.c | 4 ergm-4.0.1/ergm/tests/testthat/test-Sum.R | 12 ++ ergm-4.0.1/ergm/tests/testthat/test-proposal-bdstrattnt.R | 20 ++-- ergm-4.0.1/ergm/tests/testthat/test-target-offset.R | 6 - ergm-4.0.1/ergm/tests/testthat/test-term-Offset.R | 11 ++ 31 files changed, 235 insertions(+), 146 deletions(-)
Title: Double Machine Learning Algorithms
Description: Implementation of double machine learning (DML) algorithms in R,
based on Emmenegger and Buehlmann (2021) "Regularizing Double Machine Learning
in Partially Linear Endogenous Models" <arXiv:2101.12525>.
Our goal is to perform inference for the linear parameter in partially
linear models with confounding variables.
The standard DML estimator of the linear parameter has a two-stage least
squares interpretation, which can lead to a large variance and overwide
confidence intervals.
We apply regularization to reduce the variance of the estimator,
which produces narrower confidence intervals that are approximately valid.
Nuisance terms can be flexibly estimated with machine learning algorithms.
Author: Corinne Emmenegger [aut, cre] (<https://orcid.org/0000-0003-0353-8888>),
Peter Buehlmann [ths] (<https://orcid.org/0000-0002-1782-6015>)
Maintainer: Corinne Emmenegger <emmenegger@stat.math.ethz.ch>
Diff between dmlalg versions 0.0.1 dated 2021-06-11 and 0.0.2 dated 2021-06-21
DESCRIPTION | 6 MD5 | 14 + NEWS.md | 4 R/regsdml.R | 242 +++++++++++++++----------- tests/testthat/res1.RData |only tests/testthat/res2.RData |only tests/testthat/res3.RData |only tests/testthat/res4.RData |only tests/testthat/test-numerical_output.R | 45 +++-- tests/testthat/test-singular_designs.R | 297 +++++++++++++++++++++++---------- 10 files changed, 400 insertions(+), 208 deletions(-)
Title: Vector Fields from Spatial Time Series of Population Abundance
Description: Functions for converting time series of spatial abundance or density
data in raster format to vector fields of population movement using the digital
image correlation technique. More specifically, the functions in the package
compute cross-covariance using discrete fast Fourier transforms for computational
efficiency. Vectors in vector fields point in the direction of highest two
dimensional cross-covariance. The package has a novel implementation of the
digital image correlation algorithm that is designed to detect persistent
directional movement when image time series extend beyond a sequence of
two raster images.
Author: Devin Goodsman [aut, cre] (<https://orcid.org/0000-0003-1935-5779>)
Maintainer: Devin Goodsman <goodsman@ualberta.ca>
Diff between ICvectorfields versions 0.0.1 dated 2021-06-18 and 0.0.2 dated 2021-06-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 3 +++ README.md | 13 +++++++++++-- 4 files changed, 21 insertions(+), 9 deletions(-)
More information about ICvectorfields at CRAN
Permanent link
Title: Translating Coding Statements using get() and eval() for
Improved Run-Time Coding Efficiency
Description: The getDTeval() function facilitates the translation of the original coding statement to an optimized form for improved runtime efficiency without compromising on the programmatic coding design.
The function can either provide a translation of the coding statement, directly evaluate the translation to return a coding result, or provide both of these outputs.
Author: David Shilane [aut],
Mayur Bansal [ctb, cre],
Anderson Nelson [ctb],
Caffrey Lee [ctb],
Zichen Huang [ctb]
Maintainer: Mayur Bansal <mb4511@columbia.edu>
Diff between getDTeval versions 0.0.1 dated 2020-11-18 and 0.0.2 dated 2021-06-21
DESCRIPTION | 12 ++++------- MD5 | 12 +++++------ NAMESPACE | 1 R/getDTeval.R | 34 +++++++++++++++++--------------- inst/doc/Introduction_to_getDTeval.Rmd | 2 - inst/doc/Introduction_to_getDTeval.html | 20 +++++++++--------- vignettes/Introduction_to_getDTeval.Rmd | 2 - 7 files changed, 43 insertions(+), 40 deletions(-)
Title: Simplified Data Analysis with Wrapper Functions for the
'Data.Table' Package
Description: Provides functionality for users who are learning R or the techniques of data analysis. Written as a collection of wrapper functions, the 'DTwrapper' package facilitates many core operations of data processing. This is achieved with relatively few requirements about the order of the processing steps or knowledge of specialized syntax. 'DTwrappers' creates coding results along with translations to data.table's code. This enables users to benefit from the speed and efficiency of data.table's calculations. Furthermore, the package also provides the translated code for educational purposes so that users can review working examples of coding syntax and calculations.
Author: David Shilane [aut],
Mayur Bansal [ctb, cre]
Maintainer: Mayur Bansal <mb4511@columbia.edu>
Diff between DTwrappers versions 0.0.1 dated 2021-05-04 and 0.0.2 dated 2021-06-21
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/dt.calculate.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Seasonal Adjustment of Daily Time Series
Description: Seasonal- and calendar adjustment of time series
with daily frequency using the DSA approach developed by Ollech,
Daniel (2018): Seasonal adjustment of daily time series. Bundesbank
Discussion Paper 41/2018.
Author: Daniel Ollech [aut, cre]
Maintainer: Daniel Ollech <daniel.ollech@bundesbank.de>
Diff between dsa versions 0.74.18 dated 2020-04-15 and 1.0.12 dated 2021-06-21
dsa-0.74.18/dsa/R/Add.R |only dsa-0.74.18/dsa/R/DayOfMonthDummy.R |only dsa-0.74.18/dsa/R/Holiday.R |only dsa-0.74.18/dsa/R/Time.R |only dsa-0.74.18/dsa/R/day_split.R |only dsa-0.74.18/dsa/R/df2HTML.R |only dsa-0.74.18/dsa/R/dow_dummy.R |only dsa-0.74.18/dsa/R/doy_dummy.R |only dsa-0.74.18/dsa/R/drop31.R |only dsa-0.74.18/dsa/R/fill31.R |only dsa-0.74.18/dsa/R/fill_up.R |only dsa-0.74.18/dsa/R/makeCal.R |only dsa-0.74.18/dsa/R/makeDummy.R |only dsa-0.74.18/dsa/R/outlier.R |only dsa-0.74.18/dsa/R/plot_daily.R |only dsa-0.74.18/dsa/man/Add.Rd |only dsa-0.74.18/dsa/man/Holiday.Rd |only dsa-0.74.18/dsa/man/Time.Rd |only dsa-0.74.18/dsa/man/day_split.Rd |only dsa-0.74.18/dsa/man/df2HTML.Rd |only dsa-0.74.18/dsa/man/dom_dummy.Rd |only dsa-0.74.18/dsa/man/dow_dummy.Rd |only dsa-0.74.18/dsa/man/doy_dummy.Rd |only dsa-0.74.18/dsa/man/drop31.Rd |only dsa-0.74.18/dsa/man/fill31.Rd |only dsa-0.74.18/dsa/man/fill_up.Rd |only dsa-0.74.18/dsa/man/makeCal.Rd |only dsa-0.74.18/dsa/man/makeDummy.Rd |only dsa-0.74.18/dsa/man/outlier.Rd |only dsa-0.74.18/dsa/man/ts.sum.Rd |only dsa-1.0.12/dsa/DESCRIPTION | 16 dsa-1.0.12/dsa/MD5 | 107 +-- dsa-1.0.12/dsa/NAMESPACE | 56 - dsa-1.0.12/dsa/NEWS.md | 49 + dsa-1.0.12/dsa/R/Descaler.R | 6 dsa-1.0.12/dsa/R/GenericFunctions.R |only dsa-1.0.12/dsa/R/HelperFunctions.R |only dsa-1.0.12/dsa/R/daily_sim.R | 5 dsa-1.0.12/dsa/R/data.R |only dsa-1.0.12/dsa/R/del_names.R |only dsa-1.0.12/dsa/R/dsa.R | 745 ++++++++++++----------- dsa-1.0.12/dsa/R/get_original.R | 10 dsa-1.0.12/dsa/R/get_sa.R | 12 dsa-1.0.12/dsa/R/get_trend.R | 20 dsa-1.0.12/dsa/R/make_cal.R |only dsa-1.0.12/dsa/R/make_dummy.R |only dsa-1.0.12/dsa/R/make_holiday.R |only dsa-1.0.12/dsa/R/multi_xts2ts.R |only dsa-1.0.12/dsa/R/output.R | 1150 +++++++++++++++++++----------------- dsa-1.0.12/dsa/R/plot_spectrum.R | 26 dsa-1.0.12/dsa/R/ts2xts.R | 6 dsa-1.0.12/dsa/R/ts_sum.R | 4 dsa-1.0.12/dsa/R/xts2ts.R | 16 dsa-1.0.12/dsa/R/xtsplot.R | 30 dsa-1.0.12/dsa/build |only dsa-1.0.12/dsa/data |only dsa-1.0.12/dsa/inst |only dsa-1.0.12/dsa/man/Descaler.Rd | 6 dsa-1.0.12/dsa/man/daily_data.Rd |only dsa-1.0.12/dsa/man/daily_sim.Rd | 4 dsa-1.0.12/dsa/man/del_names.Rd |only dsa-1.0.12/dsa/man/dsa.Rd | 87 ++ dsa-1.0.12/dsa/man/dsa_examples.Rd |only dsa-1.0.12/dsa/man/get_original.Rd | 2 dsa-1.0.12/dsa/man/get_sa.Rd | 2 dsa-1.0.12/dsa/man/get_trend.Rd | 2 dsa-1.0.12/dsa/man/holidays.Rd |only dsa-1.0.12/dsa/man/make_cal.Rd |only dsa-1.0.12/dsa/man/make_dummy.Rd |only dsa-1.0.12/dsa/man/make_holiday.Rd |only dsa-1.0.12/dsa/man/multi_xts2ts.Rd |only dsa-1.0.12/dsa/man/output.Rd | 21 dsa-1.0.12/dsa/man/plot.daily.Rd | 4 dsa-1.0.12/dsa/man/plot_spectrum.Rd | 12 dsa-1.0.12/dsa/man/print.daily.Rd |only dsa-1.0.12/dsa/man/ts_sum.Rd |only dsa-1.0.12/dsa/man/xtsplot.Rd | 15 dsa-1.0.12/dsa/vignettes |only 78 files changed, 1296 insertions(+), 1117 deletions(-)
Title: Supervised Tensor Decomposition with Side Information
Description: Implement the alternating algorithm for supervised tensor decomposition with interactive side information.
Author: Jiaxin Hu [aut, cre, cph],
Zhuoyan Xu [aut, cph],
Chanwoo Lee [aut, cph],
Miaoyan Wang [aut, cph]
Maintainer: Jiaxin Hu <jhu267@wisc.edu>
Diff between tensorregress versions 3.0 dated 2020-09-16 and 4.0 dated 2021-06-21
DESCRIPTION | 11 +-- MD5 | 12 ++-- R/bricks.R | 6 ++ R/tensor_regress.R | 139 +++++++++++++++++++++++++++++++++++++++++--------- man/sele_rank.Rd | 11 ++- man/sim_data.Rd | 5 + man/tensor_regress.Rd | 13 +++- 7 files changed, 152 insertions(+), 45 deletions(-)
Title: Extension to 'ggplot2'
Description: The R package 'ggplot2' is a plotting system based on the grammar of graphics.
'GGally' extends 'ggplot2' by adding several functions
to reduce the complexity of combining geometric objects with transformed data.
Some of these functions include a pairwise plot matrix, a two group pairwise plot
matrix, a parallel coordinates plot, a survival plot, and several functions to
plot networks.
Author: Barret Schloerke [aut, cre],
Di Cook [aut, ths],
Joseph Larmarange [aut],
Francois Briatte [aut],
Moritz Marbach [aut],
Edwin Thoen [aut],
Amos Elberg [aut],
Ott Toomet [ctb],
Jason Crowley [aut],
Heike Hofmann [ths],
Hadley Wickham [ths]
Maintainer: Barret Schloerke <schloerke@gmail.com>
Diff between GGally versions 2.1.1 dated 2021-03-08 and 2.1.2 dated 2021-06-21
DESCRIPTION | 10 ++++----- MD5 | 38 ++++++++++++++++++------------------- NEWS.md | 7 ++++++ R/data-australia-pisa-2012.R | 2 - R/gg-plots.R | 2 - R/ggcoef_model.R | 18 +++++++++++------ R/ggcorr.R | 2 - R/ggnet2.R | 8 +++---- R/ggnetworkmap.R | 2 - R/ggsurv.R | 4 +-- build/GGally.pdf |binary man/australia_PISA2012.Rd | 2 - man/ggcoef_model.Rd | 2 - man/ggnetworkmap.Rd | 2 - man/ggsurv.Rd | 4 +-- tests/testthat/test-gg-plots.R | 2 - tests/testthat/test-ggcoef_model.R | 9 +++++++- tests/testthat/test-ggnet.R | 14 ++++++------- tests/testthat/test-ggnet2.R | 13 ++++++------ tests/testthat/test-ggnetworkmap.R | 6 ++--- 20 files changed, 84 insertions(+), 63 deletions(-)
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide to
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.5.0 dated 2021-02-22 and 1.5.1 dated 2021-06-21
DESCRIPTION | 14 ++++++------- MD5 | 42 ++++++++++++++++++++++------------------- NAMESPACE | 2 + NEWS.md | 7 ++++++ R/RcppExports.R |only R/fapply.R | 3 +- R/fcat.R | 14 ++++++------- R/fdata.R | 13 +++++++++++- R/flist.R | 9 +++++--- R/fmt.R | 8 +++---- R/fmtr-package.R |only README.md | 1 build/vignette.rds |binary inst/doc/fmtr-convenience.html | 4 +-- inst/doc/fmtr-fapply.html | 4 +-- inst/doc/fmtr-fcat.html | 4 +-- inst/doc/fmtr-fdata.html | 4 +-- inst/doc/fmtr-helpers.html | 4 +-- src |only tests/testthat/test-fapply.R | 14 +++++++++++-- tests/testthat/test-fcat.R | 38 +++++++++++++++++++++---------------- tests/testthat/test-fdata.R | 14 ++++++++++--- tests/testthat/test-fmt.R | 4 +-- 23 files changed, 128 insertions(+), 75 deletions(-)