Title: A Fast Clustering Algorithm for High Dimensional Data Based on
the Gram Matrix Decomposition
Description: Clustering algorithm for high dimensional data. Assuming that P feature measurements on N objects are arranged in an N×P matrix X, this package provides clustering based on the left Gram matrix XX^T. To simulate test data, type "help('simulate_HD_data')" and to learn how to use the clustering algorithm, type "help('RJclust')". To cite this package, type 'citation("RJcluster")'.
Author: Shahina Rahman [aut],
Valen E. Johnson [aut],
Suhasini Subba Rao [aut],
Rachael Shudde [aut, cre, trl]
Maintainer: Rachael Shudde <rachael.shudde@gmail.com>
Diff between RJcluster versions 3.0.1 dated 2021-07-15 and 3.1.0 dated 2021-07-21
DESCRIPTION | 6 ++-- MD5 | 12 ++++----- R/AlgorithmImplementation.R | 51 +++++++++++++++++++++++++++++------------- build/partial.rdb |binary inst/doc/RJclust_Vignette.pdf |binary man/RJclust.Rd | 13 ++++++---- man/RJcluster-package.Rd | 4 +-- 7 files changed, 55 insertions(+), 31 deletions(-)
Title: Network Meta-Analysis using Integrated Nested Laplace
Approximations
Description: Performs network meta-analysis using integrated nested Laplace approximations ('INLA')
which is described in Guenhan, Held, and Friede (2018) <doi:10.1002/jrsm.1285>.
Includes methods to assess the heterogeneity and inconsistency in the network.
Contains more than ten different network meta-analysis dataset.
'INLA' package can be obtained from <https://www.r-inla.org>.
Author: Burak Kuersad Guenhan [aut, cre]
(<https://orcid.org/0000-0002-7454-8680>)
Maintainer: Burak Kuersad Guenhan <burakgunhan@gmail.com>
Diff between nmaINLA versions 1.0.0 dated 2021-02-23 and 1.1.0 dated 2021-07-21
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- R/meta_inla.R | 4 ++-- R/nmaINLA.R | 7 ++++--- R/nma_inla.R | 7 +++---- build/vignette.rds |binary inst/doc/nmaINLA.pdf |binary man/nmaINLA.Rd | 7 ++++--- tests/testthat/test_first.R | 2 +- 9 files changed, 28 insertions(+), 27 deletions(-)
Title: Download Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil as 'sf' objects
in R. The package includes a wide range of geospatial data available
at various geographic scales and for various years with harmonized
attributes, projection and fixed topology.
Author: Rafael H. M. Pereira [aut, cre]
(<https://orcid.org/0000-0003-2125-7465>),
Caio Nogueira Goncalves [aut],
Paulo Henrique Fernandes de Araujo [ctb],
Guilherme Duarte Carvalho [ctb],
Rodrigo Almeida de Arruda [ctb],
Igor Nascimento [ctb],
Barbara Santiago Pedreira da Costa [ctb],
Welligtton Silva Cavedo [ctb],
Pedro R. Andrade [ctb],
Alan da Silva [ctb],
Carlos Kauê Vieira Braga [ctb],
Carl Schmertmann [ctb],
Alessandro Samuel-Rosa [ctb],
Daniel Ferreira [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 1.6.2 dated 2021-07-08 and 1.6.3 dated 2021-07-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/list_geobr.R | 6 +++--- build/partial.rdb |binary 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Conditional Autoregressive LASSO
Description: Algorithms to fit Bayesian Conditional Autoregressive LASSO with automatic and adaptive shrinkage described in Shen and Solis-Lemus (2020) <arXiv:2012.08397>.
Author: Yunyi Shen [aut, cre] (<https://orcid.org/0000-0003-2779-6507>),
Claudia Solis-Lemus [aut] (<https://orcid.org/0000-0002-9789-8915>)
Maintainer: Yunyi Shen <yshen99@wisc.edu>
Diff between CARlasso versions 0.1 dated 2021-07-20 and 0.1.1 dated 2021-07-21
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- build/vignette.rds |binary inst/doc/buildown.Rmd | 4 ++-- src/CAR-ALASSO-hir.cpp | 4 ++-- src/CAR-ALASSO.cpp | 4 ++-- src/CAR-LASSO-hir.cpp | 4 ++-- src/CAR-LASSO.cpp | 4 ++-- src/graphical-intercept-ALASSO.cpp | 12 ++++++------ src/graphical-intercept-LASSO.cpp | 8 ++++---- src/multireg_wrap.cpp | 14 +++++++------- vignettes/buildown.Rmd | 4 ++-- 12 files changed, 43 insertions(+), 43 deletions(-)
Title: eBird Data Extraction and Processing in R
Description: Extract and process bird sightings records from
eBird (<http://ebird.org>), an online tool for recording bird
observations. Public access to the full eBird database is via the
eBird Basic Dataset (EBD; see <http://ebird.org/ebird/data/download>
for access), a downloadable text file. This package is an interface to
AWK for extracting data from the EBD based on taxonomic, spatial, or
temporal filters, to produce a manageable file size that can be
imported into R.
Author: Matthew Strimas-Mackey [aut, cre]
(<https://orcid.org/0000-0001-8929-7776>),
Eliot Miller [aut],
Wesley Hochachka [aut],
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between auk versions 0.4.3 dated 2020-11-23 and 0.4.4 dated 2021-07-21
DESCRIPTION | 6 MD5 | 36 +- NEWS.md | 4 R/auk-rollup.r | 2 R/get-ebird-taxonomy.r | 11 build/vignette.rds |binary inst/doc/auk.Rmd | 4 inst/doc/auk.html | 461 +++++++------------------------ inst/doc/development.Rmd | 4 inst/doc/development.html | 273 ------------------ man/auk_rollup.Rd | 2 tests/testthat/test_auk-filter.r | 15 - tests/testthat/test_auk-keep-drop.r | 18 - tests/testthat/test_auk-select.r | 7 tests/testthat/test_auk-split.r | 107 +++---- tests/testthat/test_filters.r | 10 tests/testthat/test_get-ebird-taxonomy.r | 4 vignettes/auk.Rmd | 4 vignettes/development.Rmd | 4 19 files changed, 234 insertions(+), 738 deletions(-)
Title: Model Wrappers for Discriminant Analysis
Description: Bindings for additional classification models for use with
the 'parsnip' package. Models include flavors of discriminant
analysis, such as linear (Fisher (1936)
<doi:10.1111/j.1469-1809.1936.tb02137.x>), regularized (Friedman
(1989) <doi:10.1080/01621459.1989.10478752>), and flexible (Hastie,
Tibshirani, and Buja (1994) <doi:10.1080/01621459.1994.10476866>), as
well as naive Bayes classifiers (Hand and Yu (2007)
<doi:10.1111/j.1751-5823.2001.tb00465.x>).
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between discrim versions 0.1.2 dated 2021-05-28 and 0.1.3 dated 2021-07-21
discrim-0.1.2/discrim/R/discrim_lin.R |only discrim-0.1.2/discrim/R/discrim_lin_data.R |only discrim-0.1.2/discrim/man/rmd/discrim-flexible-engine.Rmd |only discrim-0.1.2/discrim/man/rmd/discrim-lin-engine.Rmd |only discrim-0.1.2/discrim/man/rmd/discrim-quad-engine.Rmd |only discrim-0.1.2/discrim/man/rmd/discrim-regularized-engine.Rmd |only discrim-0.1.2/discrim/man/rmd/naive-Bayes-engine.Rmd |only discrim-0.1.3/discrim/DESCRIPTION | 54 ++-- discrim-0.1.3/discrim/MD5 | 94 +++++-- discrim-0.1.3/discrim/NAMESPACE | 2 discrim-0.1.3/discrim/NEWS.md | 10 discrim-0.1.3/discrim/R/0_imports.R | 7 discrim-0.1.3/discrim/R/discrim_flexible.R | 79 ++---- discrim-0.1.3/discrim/R/discrim_flexible_earth.R |only discrim-0.1.3/discrim/R/discrim_linear.R |only discrim-0.1.3/discrim/R/discrim_linear_MASS.R |only discrim-0.1.3/discrim/R/discrim_linear_data.R |only discrim-0.1.3/discrim/R/discrim_linear_mda.R |only discrim-0.1.3/discrim/R/discrim_linear_sparsediscrim.R |only discrim-0.1.3/discrim/R/discrim_quad.R | 56 ++-- discrim-0.1.3/discrim/R/discrim_quad_MASS.R |only discrim-0.1.3/discrim/R/discrim_quad_data.R | 99 ++++++++ discrim-0.1.3/discrim/R/discrim_quad_sparsediscrim.R |only discrim-0.1.3/discrim/R/discrim_regularized.R | 89 +++---- discrim-0.1.3/discrim/R/discrim_regularized_klaR.R |only discrim-0.1.3/discrim/R/misc.R | 2 discrim-0.1.3/discrim/R/naive_Bayes.R | 65 +---- discrim-0.1.3/discrim/R/naive_Bayes_klaR.R |only discrim-0.1.3/discrim/R/naive_Bayes_naivebayes.R |only discrim-0.1.3/discrim/build |only discrim-0.1.3/discrim/inst/WORDLIST | 14 + discrim-0.1.3/discrim/man/details_discrim_flexible_earth.Rd |only discrim-0.1.3/discrim/man/details_discrim_linear_MASS.Rd |only discrim-0.1.3/discrim/man/details_discrim_linear_mda.Rd |only discrim-0.1.3/discrim/man/details_discrim_linear_sparsediscrim.Rd |only discrim-0.1.3/discrim/man/details_discrim_quad_MASS.Rd |only discrim-0.1.3/discrim/man/details_discrim_quad_sparsediscrim.Rd |only discrim-0.1.3/discrim/man/details_discrim_regularized_klaR.Rd |only discrim-0.1.3/discrim/man/details_naive_Bayes_klaR.Rd |only discrim-0.1.3/discrim/man/details_naive_Bayes_naivebayes.Rd |only discrim-0.1.3/discrim/man/discrim_flexible.Rd | 110 ++------- discrim-0.1.3/discrim/man/discrim_linear.Rd | 107 ++------ discrim-0.1.3/discrim/man/discrim_quad.Rd | 72 ++--- discrim-0.1.3/discrim/man/discrim_regularized.Rd | 122 +++------- discrim-0.1.3/discrim/man/discrim_update.Rd |only discrim-0.1.3/discrim/man/fit_regularized_linear.Rd |only discrim-0.1.3/discrim/man/naive_Bayes.Rd | 108 ++------ discrim-0.1.3/discrim/man/rmd/discrim_flexible_earth.Rmd |only discrim-0.1.3/discrim/man/rmd/discrim_linear_MASS.Rmd |only discrim-0.1.3/discrim/man/rmd/discrim_linear_mda.Rmd |only discrim-0.1.3/discrim/man/rmd/discrim_linear_sparsediscrim.Rmd |only discrim-0.1.3/discrim/man/rmd/discrim_quad_MASS.Rmd |only discrim-0.1.3/discrim/man/rmd/discrim_quad_sparsediscrim.Rmd |only discrim-0.1.3/discrim/man/rmd/discrim_regularized_klaR.Rmd |only discrim-0.1.3/discrim/man/rmd/naive_Bayes_klaR.Rmd |only discrim-0.1.3/discrim/man/rmd/naive_Bayes_naivebayes.Rmd |only discrim-0.1.3/discrim/man/rmd/setup.Rmd | 44 ++- discrim-0.1.3/discrim/man/rmd/template-makes-dummies.Rmd |only discrim-0.1.3/discrim/man/rmd/template-same-scale.Rmd |only discrim-0.1.3/discrim/man/rmd/template-zv-conditional.Rmd |only discrim-0.1.3/discrim/man/rmd/template-zv.Rmd |only discrim-0.1.3/discrim/tests/testthat/test-flexible.R | 9 discrim-0.1.3/discrim/tests/testthat/test-linear-fda.R | 10 discrim-0.1.3/discrim/tests/testthat/test-linear-lda.R | 38 ++- discrim-0.1.3/discrim/tests/testthat/test-linear-sda.R |only discrim-0.1.3/discrim/tests/testthat/test-linear-sparsediscrim.R |only discrim-0.1.3/discrim/tests/testthat/test-naive-Bayes.R | 10 discrim-0.1.3/discrim/tests/testthat/test-naive-Bayes_naivebayes.R | 10 discrim-0.1.3/discrim/tests/testthat/test-quad-qda.R | 11 discrim-0.1.3/discrim/tests/testthat/test-quad-sparsediscrim.R |only discrim-0.1.3/discrim/tests/testthat/test-rda.R | 10 71 files changed, 588 insertions(+), 644 deletions(-)
Title: Interface to the 'JWSACruncher' of 'JDemetra+'
Description: 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>) is the seasonal adjustment software officially recommended
to the members of the European Statistical System and the European System of Central Banks. Seasonal adjustment models performed
with 'JDemetra+' can be stored into workspaces. 'JWSACruncher' (<https://github.com/jdemetra/jwsacruncher/releases>) is a console tool that
re-estimates all the multi-processing defined in a workspace and to export the result. 'rjwsacruncher' allows to launch easily the 'JWSACruncher'.
Author: Alain Quartier-la-Tente [aut, cre]
(<https://orcid.org/0000-0001-7890-3857>),
Institut national de la statistique et des études économiques [cph]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between rjwsacruncher versions 0.1.0 dated 2019-06-15 and 0.1.1 dated 2021-07-21
DESCRIPTION | 16 MD5 | 25 NEWS.md |only R/Cruncher.R | 20 R/download_cruncher.R | 15 R/param_file.R | 2 README.md | 17 build/vignette.rds |binary inst/doc/run_jwsacruncher.R | 16 inst/doc/run_jwsacruncher.html | 1446 ++--------------------------------------- man/create_param_file.Rd | 17 man/cruncher.Rd | 7 man/cruncher_and_param.Rd | 11 man/update_workspace.Rd | 9 14 files changed, 202 insertions(+), 1399 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre],
RStudio, PBC [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 0.13.2 dated 2021-03-30 and 0.14.0 dated 2021-07-21
renv-0.13.2/renv/R/temp.R |only renv-0.14.0/renv/DESCRIPTION | 16 renv-0.14.0/renv/LICENSE | 4 renv-0.14.0/renv/MD5 | 317 ++++----- renv-0.14.0/renv/NAMESPACE | 2 renv-0.14.0/renv/NEWS.md | 116 +++ renv-0.14.0/renv/R/R.R | 17 renv-0.14.0/renv/R/activate.R | 59 + renv-0.14.0/renv/R/addins.R | 85 ++ renv-0.14.0/renv/R/available-packages.R | 26 renv-0.14.0/renv/R/binding.R | 18 renv-0.14.0/renv/R/bioconductor.R | 5 renv-0.14.0/renv/R/cache.R | 176 +++-- renv-0.14.0/renv/R/call.R | 40 + renv-0.14.0/renv/R/ci.R | 2 renv-0.14.0/renv/R/clean.R | 12 renv-0.14.0/renv/R/conda.R |only renv-0.14.0/renv/R/config-defaults.R | 20 renv-0.14.0/renv/R/config.R | 14 renv-0.14.0/renv/R/consent.R | 4 renv-0.14.0/renv/R/deactivate.R | 2 renv-0.14.0/renv/R/dependencies.R | 251 +++++-- renv-0.14.0/renv/R/description.R | 41 + renv-0.14.0/renv/R/diagnostics.R | 4 renv-0.14.0/renv/R/difftime.R | 12 renv-0.14.0/renv/R/download.R | 22 renv-0.14.0/renv/R/embed.R | 62 + renv-0.14.0/renv/R/envvar.R |only renv-0.14.0/renv/R/exports.R |only renv-0.14.0/renv/R/extsoft.R | 4 renv-0.14.0/renv/R/file-backed.R | 16 renv-0.14.0/renv/R/files.R | 21 renv-0.14.0/renv/R/homebrew.R |only renv-0.14.0/renv/R/hydrate.R | 4 renv-0.14.0/renv/R/imbue.R | 2 renv-0.14.0/renv/R/infrastructure.R | 10 renv-0.14.0/renv/R/init.R | 6 renv-0.14.0/renv/R/install.R | 92 +- renv-0.14.0/renv/R/json.R | 8 renv-0.14.0/renv/R/license.R |only renv-0.14.0/renv/R/load.R | 167 +++- renv-0.14.0/renv/R/lockfile-api.R | 18 renv-0.14.0/renv/R/lockfile-write.R | 35 renv-0.14.0/renv/R/lockfile.R | 9 renv-0.14.0/renv/R/lockfiles.R | 2 renv-0.14.0/renv/R/manifest-convert.R |only renv-0.14.0/renv/R/migrate.R | 2 renv-0.14.0/renv/R/mran.R | 72 +- renv-0.14.0/renv/R/namespace.R | 4 renv-0.14.0/renv/R/package.R | 21 renv-0.14.0/renv/R/path.R | 7 renv-0.14.0/renv/R/paths.R | 95 ++ renv-0.14.0/renv/R/pip.R |only renv-0.14.0/renv/R/platform.R | 4 renv-0.14.0/renv/R/preflight.R | 2 renv-0.14.0/renv/R/pretty.R | 67 + renv-0.14.0/renv/R/pyenv.R |only renv-0.14.0/renv/R/python-conda.R | 10 renv-0.14.0/renv/R/python-virtualenv.R | 157 ++-- renv-0.14.0/renv/R/python.R | 333 +++++++-- renv-0.14.0/renv/R/rebuild.R | 14 renv-0.14.0/renv/R/remotes.R | 223 +++++- renv-0.14.0/renv/R/restart.R | 16 renv-0.14.0/renv/R/restore.R | 31 renv-0.14.0/renv/R/retrieve.R | 72 +- renv-0.14.0/renv/R/rspm.R | 2 renv-0.14.0/renv/R/rstudio.R | 14 renv-0.14.0/renv/R/scaffold.R | 27 renv-0.14.0/renv/R/scope.R | 42 + renv-0.14.0/renv/R/session.R | 2 renv-0.14.0/renv/R/settings.R | 9 renv-0.14.0/renv/R/shims.R | 6 renv-0.14.0/renv/R/skip.R | 7 renv-0.14.0/renv/R/snapshot.R | 40 - 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Title: Data and Functions for the Book Modern Statistical Graphics
Description: A companion to the Chinese book ``Modern Statistical Graphics''.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Peng Zhao [aut],
Lijia Yu [ctb],
Xiangyun Huang [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between MSG versions 0.7 dated 2021-06-23 and 0.8 dated 2021-07-21
MSG-0.7/MSG/data/cn_vs_us.rda |only MSG-0.7/MSG/data/eq2010.rda |only MSG-0.7/MSG/demo/eqMaps.R |only MSG-0.7/MSG/inst/examples/ChinaHeart3D.R |only MSG-0.7/MSG/inst/examples/cn-us-redraw-tikz.R |only MSG-0.7/MSG/inst/examples/cn-us-redraw.R |only MSG-0.7/MSG/inst/examples/covidchina.R |only MSG-0.7/MSG/inst/examples/covidcountries.R |only MSG-0.7/MSG/inst/examples/eqMaps-demo.R |only MSG-0.7/MSG/inst/examples/map.R |only MSG-0.7/MSG/inst/examples/map2.R |only MSG-0.7/MSG/inst/examples/rgl-china-map.R |only MSG-0.7/MSG/inst/examples/worldmap.R |only MSG-0.7/MSG/inst/extdata/ChinaGeoMap.csv |only MSG-0.7/MSG/inst/extdata/covidchina.rds |only MSG-0.7/MSG/inst/extdata/covidcountries.rds |only MSG-0.7/MSG/man/cn_vs_us.Rd |only MSG-0.7/MSG/man/eq2010.Rd |only MSG-0.8/MSG/DESCRIPTION | 6 +-- MSG-0.8/MSG/MD5 | 48 ++++++++------------------ MSG-0.8/MSG/NEWS.md | 4 ++ MSG-0.8/MSG/R/MSG-package.R | 20 +--------- MSG-0.8/MSG/README.md | 8 ---- MSG-0.8/MSG/data/datalist | 2 - MSG-0.8/MSG/demo/00Index | 1 MSG-0.8/MSG/man/BinormCircle.Rd | 2 - MSG-0.8/MSG/man/ChinaLifeEdu.Rd | 2 - MSG-0.8/MSG/man/Export.USCN.Rd | 4 +- MSG-0.8/MSG/man/canabalt.Rd | 2 - MSG-0.8/MSG/man/gov.cn.pct.Rd | 32 ++++++++--------- MSG-0.8/MSG/man/quake6.Rd | 4 +- MSG-0.8/MSG/man/t.diff.Rd | 2 - MSG-0.8/MSG/man/tukeyCount.Rd | 24 ++++++------- MSG-0.8/MSG/man/vec2col.Rd | 2 - 34 files changed, 62 insertions(+), 101 deletions(-)
Title: Additional Functions for Model Tuning
Description: The ability to tune models is important. 'finetune' enhances
the 'tune' package by providing more specialized methods for finding
reasonable values of model tuning parameters. Two racing methods
described by Kuhn (2014) <arXiv:1405.6974> are included. An iterative
search method using generalized simulated annealing (Bohachevsky,
Johnson and Stein, 1986) <doi:10.1080/00401706.1986.10488128> is also
included.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between finetune versions 0.0.1 dated 2020-11-20 and 0.1.0 dated 2021-07-21
DESCRIPTION | 37 +++++---- MD5 | 28 ++++--- NAMESPACE | 2 NEWS.md | 12 +++ R/pillar.R |only R/racing_helpers.R | 93 +++++++++++++++++-------- R/sim_anneal_helpers.R | 8 +- R/tune_race_anova.R | 2 R/tune_race_win_loss.R | 2 R/tune_sim_anneal.R | 3 R/zzz.R | 7 + README.md | 72 +++++++++---------- man/figures |only man/pillar-helpers.Rd |only tests/testthat/test-random-integer-neighbors.R |only tests/testthat/test-sa-overall.R | 38 ++++++++++ tests/testthat/test-win-loss-overall.R | 49 +++++++++++++ 17 files changed, 253 insertions(+), 100 deletions(-)
Title: Two-Steps Benchmarks for Time Series Disaggregation
Description: The twoStepsBenchmark() and threeRuleSmooth() functions allow you to
disaggregate a low-frequency time-serie with higher frequency time-series,
using the French National Accounts methodology. The aggregated sum of the
resulting time-serie is strictly equal to the low-frequency serie within the
benchmarking window. Typically, the low-frequency serie is an annual one,
unknown for the last year, and the high frequency one is either quarterly or
mensual. See "Methodology of quarterly national accounts", Insee Méthodes
N°126, by Insee (2012, ISBN:978-2-11-068613-8).
Author: Arnaud Feldmann [aut, cre] (<https://orcid.org/0000-0003-0109-7505>),
Franck Arnaud [ctb] (barplot base graphics method for the mts class),
Institut national de la statistique et des études économiques [cph]
(https://www.insee.fr/)
Maintainer: Arnaud Feldmann <arnaud.feldmann@insee.fr>
Diff between disaggR versions 1.0.0 dated 2021-06-18 and 1.0.1 dated 2021-07-21
disaggR-1.0.0/disaggR/R/s4declaration.R |only disaggR-1.0.0/disaggR/man/reexports.Rd |only disaggR-1.0.1/disaggR/DESCRIPTION | 33 disaggR-1.0.1/disaggR/MD5 | 87 disaggR-1.0.1/disaggR/NAMESPACE | 258 +- disaggR-1.0.1/disaggR/NEWS.md | 7 disaggR-1.0.1/disaggR/R/disaggR.R | 2 disaggR-1.0.1/disaggR/R/methods.R | 6 disaggR-1.0.1/disaggR/R/plot.R | 159 - disaggR-1.0.1/disaggR/R/reView.R | 1055 +++++----- disaggR-1.0.1/disaggR/R/s4register.R |only disaggR-1.0.1/disaggR/R/threeRuleSmooth.R | 2 disaggR-1.0.1/disaggR/R/twoStepsBenchmark.R | 2 disaggR-1.0.1/disaggR/man/bflSmooth_matrices_factory.Rd | 34 disaggR-1.0.1/disaggR/man/construction.Rd | 40 disaggR-1.0.1/disaggR/man/default_col_pal.Rd | 26 disaggR-1.0.1/disaggR/man/default_lty_pal.Rd | 8 disaggR-1.0.1/disaggR/man/default_theme_ggplot.Rd | 24 disaggR-1.0.1/disaggR/man/disaggR-class.Rd | 2 disaggR-1.0.1/disaggR/man/model.list.Rd | 58 disaggR-1.0.1/disaggR/man/outliers.Rd | 50 disaggR-1.0.1/disaggR/man/plot.tscomparison.Rd | 6 disaggR-1.0.1/disaggR/man/prais.Rd | 90 disaggR-1.0.1/disaggR/man/reView.Rd | 108 - disaggR-1.0.1/disaggR/man/residuals_extrap.Rd | 56 disaggR-1.0.1/disaggR/man/rho.Rd | 48 disaggR-1.0.1/disaggR/man/smoothed.part.Rd | 58 disaggR-1.0.1/disaggR/man/turnover.Rd | 40 disaggR-1.0.1/disaggR/tests/testthat.R | 8 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/gg-main-scatter-smooth.svg | 60 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/gg-plot-main-scatter.svg | 54 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/gg-plot-scatter-2008-2012.svg | 18 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/gg-plot-scatter-coeff-2008-2012.svg | 78 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/gg-scatter-2008-2012-smooth.svg | 16 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/gg-scatter-showlegendf.svg | 46 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/plot-main-scatter-smooth.svg | 58 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/plot-main-scatter.svg | 52 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/plot-scatter-2008-2012-smooth.svg | 12 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/plot-scatter-2008-2012.svg | 12 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/plot-scatter-coeff-2008-2012.svg | 58 disaggR-1.0.1/disaggR/tests/testthat/_snaps/plot/plot-scatter-showlegendf.svg | 44 disaggR-1.0.1/disaggR/tests/testthat/shiny-withoutset/app.R | 16 disaggR-1.0.1/disaggR/tests/testthat/test-methods.R | 8 disaggR-1.0.1/disaggR/tests/testthat/test-plot.R | 392 +-- disaggR-1.0.1/disaggR/tests/testthat/test-praislm.R | 36 disaggR-1.0.1/disaggR/tests/testthat/test-reView.R | 9 46 files changed, 1638 insertions(+), 1598 deletions(-)
Title: Multiple Grubbs-Beck Low-Outlier Test
Description: Compute the multiple Grubbs-Beck low-outlier test on positively distributed
data and utilities for noninterpretive U.S. Geological Survey annual peak-streamflow
data processing discussed in Cohn et al. (2013) <doi:10.1002/wrcr.20392> and
England et al. (2017) <doi:10.3133/tm4B5>.
Author: William H. Asquith [aut, cre], John F. England [aut, ctb], George R. Herrmann [ctb]
Maintainer: William H. Asquith <wasquith@usgs.gov>
Diff between MGBT versions 1.0.4 dated 2020-03-23 and 1.0.7 dated 2021-07-21
DESCRIPTION | 8 ++++---- MD5 | 35 +++++++++++++++++++---------------- NAMESPACE | 1 + NEWS | 45 +++++++++++++++++++++++++++++++++++++++++++++ R/plotFFQevol.R | 3 ++- R/plotPeaks.R | 40 ++++++++++++++++++++++++++++++---------- R/readNWISwatstore.R |only R/splitPeakCodes.R | 19 +++++++++++-------- README.md | 41 ++++++++++++++++++++--------------------- build |only inst/CITATION | 6 +++--- inst/README.md | 12 ++++++++---- man/ASlo.Rd | 2 +- man/MGBT-package.Rd | 18 +++++++++--------- man/MGBT.Rd | 4 ++-- man/makeWaterYear.Rd | 2 +- man/plotPeaks.Rd | 6 ++++-- man/plotPeaks_batch.Rd | 8 ++++---- man/readNWISwatstore.Rd |only man/splitPeakCodes.Rd | 9 +++++---- 20 files changed, 169 insertions(+), 90 deletions(-)
Title: Access Google Sheets using the Sheets API V4
Description: Interact with Google Sheets through the Sheets API v4
<https://developers.google.com/sheets/api>. "API" is an acronym for
"application programming interface"; the Sheets API allows users to
interact with Google Sheets programmatically, instead of via a web
browser. The "v4" refers to the fact that the Sheets API is currently
at version 4. This package can read and write both the metadata and
the cell data in a Sheet.
Author: Jennifer Bryan [cre, aut] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between googlesheets4 versions 0.3.0 dated 2021-03-04 and 1.0.0 dated 2021-07-21
googlesheets4-0.3.0/googlesheets4/R/deprecated.R |only googlesheets4-0.3.0/googlesheets4/R/glue.R |only googlesheets4-0.3.0/googlesheets4/R/sheets_id.R |only googlesheets4-0.3.0/googlesheets4/build |only googlesheets4-0.3.0/googlesheets4/man/as_id.googlesheets4_spreadsheet.Rd |only googlesheets4-0.3.0/googlesheets4/man/as_sheets_id.Rd |only googlesheets4-0.3.0/googlesheets4/man/googlesheets4-deprecated.Rd |only googlesheets4-0.3.0/googlesheets4/man/gs4_example.Rd |only googlesheets4-0.3.0/googlesheets4/tests/testthat/ref/sheets-id-print-deauthed.txt |only googlesheets4-0.3.0/googlesheets4/tests/testthat/ref/sheets-id-print-no-cred.txt |only googlesheets4-0.3.0/googlesheets4/tests/testthat/ref/sheets-id-print-nonexistent.txt |only googlesheets4-0.3.0/googlesheets4/tests/testthat/ref/sheets-id-print-with-token.txt |only googlesheets4-0.3.0/googlesheets4/tests/testthat/test-sheets_id.R |only googlesheets4-1.0.0/googlesheets4/DESCRIPTION | 30 - googlesheets4-1.0.0/googlesheets4/MD5 | 210 +++++----- googlesheets4-1.0.0/googlesheets4/NAMESPACE | 37 - 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Title: Dynamic Function-Oriented 'Make'-Like Declarative Workflows
Description: As a pipeline toolkit for Statistics and data science in R,
the 'targets' package brings together function-oriented programming and
'Make'-like declarative workflows.
It analyzes the dependency relationships among the tasks of a workflow,
skips steps that are already up to date, runs the necessary
computation with optional parallel workers, abstracts files as
R objects, and provides tangible evidence that the results match
the underlying code and data. The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Matthew T. Warkentin [ctb],
Samantha Oliver [rev] (<https://orcid.org/0000-0001-5668-1165>),
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between targets versions 0.4.2 dated 2021-04-30 and 0.6.0 dated 2021-07-21
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targets-0.6.0/targets/man/tar_engine_knitr.Rd |only targets-0.6.0/targets/man/tar_envir.Rd | 6 targets-0.6.0/targets/man/tar_envvars.Rd | 3 targets-0.6.0/targets/man/tar_exist_meta.Rd | 12 targets-0.6.0/targets/man/tar_exist_objects.Rd | 11 targets-0.6.0/targets/man/tar_exist_process.Rd | 12 targets-0.6.0/targets/man/tar_exist_progress.Rd | 12 targets-0.6.0/targets/man/tar_exist_script.Rd | 21 targets-0.6.0/targets/man/tar_glimpse.Rd | 92 + targets-0.6.0/targets/man/tar_group.Rd | 6 targets-0.6.0/targets/man/tar_helper.Rd | 3 targets-0.6.0/targets/man/tar_helper_raw.Rd | 3 targets-0.6.0/targets/man/tar_invalidate.Rd | 17 targets-0.6.0/targets/man/tar_language.Rd |only targets-0.6.0/targets/man/tar_load.Rd | 32 targets-0.6.0/targets/man/tar_load_globals.Rd |only targets-0.6.0/targets/man/tar_load_raw.Rd | 30 targets-0.6.0/targets/man/tar_make.Rd | 64 targets-0.6.0/targets/man/tar_make_clustermq.Rd | 71 targets-0.6.0/targets/man/tar_make_future.Rd | 68 targets-0.6.0/targets/man/tar_manifest.Rd | 40 targets-0.6.0/targets/man/tar_meta.Rd | 42 targets-0.6.0/targets/man/tar_name.Rd | 6 targets-0.6.0/targets/man/tar_network.Rd | 96 + targets-0.6.0/targets/man/tar_newer.Rd |only targets-0.6.0/targets/man/tar_objects.Rd | 19 targets-0.6.0/targets/man/tar_older.Rd |only targets-0.6.0/targets/man/tar_option_get.Rd | 8 targets-0.6.0/targets/man/tar_option_reset.Rd | 2 targets-0.6.0/targets/man/tar_option_set.Rd | 185 -- targets-0.6.0/targets/man/tar_outdated.Rd | 70 targets-0.6.0/targets/man/tar_path.Rd | 21 targets-0.6.0/targets/man/tar_pattern.Rd | 6 targets-0.6.0/targets/man/tar_pid.Rd | 14 targets-0.6.0/targets/man/tar_pipeline.Rd | 3 targets-0.6.0/targets/man/tar_poll.Rd | 12 targets-0.6.0/targets/man/tar_process.Rd | 17 targets-0.6.0/targets/man/tar_progress.Rd | 23 targets-0.6.0/targets/man/tar_progress_branches.Rd | 19 targets-0.6.0/targets/man/tar_progress_summary.Rd | 14 targets-0.6.0/targets/man/tar_prune.Rd | 43 targets-0.6.0/targets/man/tar_read.Rd | 29 targets-0.6.0/targets/man/tar_read_raw.Rd | 29 targets-0.6.0/targets/man/tar_renv.Rd | 31 targets-0.6.0/targets/man/tar_resources.Rd |only targets-0.6.0/targets/man/tar_resources_aws.Rd |only targets-0.6.0/targets/man/tar_resources_clustermq.Rd |only targets-0.6.0/targets/man/tar_resources_feather.Rd |only targets-0.6.0/targets/man/tar_resources_fst.Rd |only targets-0.6.0/targets/man/tar_resources_future.Rd |only targets-0.6.0/targets/man/tar_resources_parquet.Rd |only targets-0.6.0/targets/man/tar_resources_qs.Rd |only targets-0.6.0/targets/man/tar_resources_url.Rd |only targets-0.6.0/targets/man/tar_script.Rd | 45 targets-0.6.0/targets/man/tar_seed.Rd | 6 targets-0.6.0/targets/man/tar_sitrep.Rd | 65 targets-0.6.0/targets/man/tar_target.Rd | 230 +-- targets-0.6.0/targets/man/tar_target_raw.Rd | 145 - targets-0.6.0/targets/man/tar_test.Rd | 9 targets-0.6.0/targets/man/tar_timestamp.Rd | 74 targets-0.6.0/targets/man/tar_timestamp_raw.Rd | 76 - targets-0.6.0/targets/man/tar_traceback.Rd | 27 targets-0.6.0/targets/man/tar_unscript.Rd |only targets-0.6.0/targets/man/tar_validate.Rd | 43 targets-0.6.0/targets/man/tar_visnetwork.Rd | 96 + targets-0.6.0/targets/man/tar_watch.Rd | 29 targets-0.6.0/targets/man/tar_watch_app_ui.Rd | 22 targets-0.6.0/targets/man/tar_watch_server.Rd | 12 targets-0.6.0/targets/man/tar_watch_ui.Rd | 24 targets-0.6.0/targets/man/tar_workspace.Rd | 45 targets-0.6.0/targets/man/tar_workspaces.Rd | 16 targets-0.6.0/targets/man/target_run_worker.Rd | 8 targets-0.6.0/targets/man/targets-package.Rd | 5 targets-0.6.0/targets/man/use_targets.Rd |only targets-0.6.0/targets/tests/aws/test-aws-hpc.R | 6 targets-0.6.0/targets/tests/aws/test-class_aws_file.R | 86 - targets-0.6.0/targets/tests/aws/test-class_aws_parquet.R | 4 targets-0.6.0/targets/tests/aws/test-class_aws_qs.R | 42 targets-0.6.0/targets/tests/aws/test-deprecated-resources.R |only targets-0.6.0/targets/tests/aws/test-prefix.R |only targets-0.6.0/targets/tests/hpc/sge_clustermq.tmpl | 1 targets-0.6.0/targets/tests/hpc/test-clustermq_local.R | 53 targets-0.6.0/targets/tests/hpc/test-clustermq_sge.R | 48 targets-0.6.0/targets/tests/hpc/test-future_local.R | 95 + targets-0.6.0/targets/tests/hpc/test-future_sge.R | 33 targets-0.6.0/targets/tests/hpc/test-options.R |only targets-0.6.0/targets/tests/hpc/test-parallel.R | 37 targets-0.6.0/targets/tests/interactive/test-backoff.R | 2 targets-0.6.0/targets/tests/interactive/test-database.R | 6 targets-0.6.0/targets/tests/interactive/test-keras.R | 2 targets-0.6.0/targets/tests/interactive/test-print.R | 59 targets-0.6.0/targets/tests/interactive/test-reporter.R | 12 targets-0.6.0/targets/tests/interactive/test-rstudio_addins.R | 102 - targets-0.6.0/targets/tests/interactive/test-sleep.R | 1 targets-0.6.0/targets/tests/interactive/test-tar_destroy.R |only targets-0.6.0/targets/tests/interactive/test-tar_edit.R | 8 targets-0.6.0/targets/tests/interactive/test-tar_poll.R | 33 targets-0.6.0/targets/tests/interactive/test-tar_watch.R | 62 targets-0.6.0/targets/tests/interactive/test-target_markdown_default.Rmd |only targets-0.6.0/targets/tests/interactive/test-target_markdown_paths.Rmd |only targets-0.6.0/targets/tests/interactive/test-time.R |only targets-0.6.0/targets/tests/interactive/test-use_targets.R |only targets-0.6.0/targets/tests/interactive/test-visnetwork.R | 77 - targets-0.6.0/targets/tests/performance/test-exit.R | 2 targets-0.6.0/targets/tests/performance/test-stems.R | 9 targets-0.6.0/targets/tests/testthat.R | 2 targets-0.6.0/targets/tests/testthat/test-class_active.R | 33 targets-0.6.0/targets/tests/testthat/test-class_builder.R | 90 + targets-0.6.0/targets/tests/testthat/test-class_cue.R | 5 targets-0.6.0/targets/tests/testthat/test-class_database.R | 15 targets-0.6.0/targets/tests/testthat/test-class_dynamic.R | 27 targets-0.6.0/targets/tests/testthat/test-class_feather.R | 48 targets-0.6.0/targets/tests/testthat/test-class_fst.R | 42 targets-0.6.0/targets/tests/testthat/test-class_fst_dt.R | 26 targets-0.6.0/targets/tests/testthat/test-class_fst_tbl.R | 28 targets-0.6.0/targets/tests/testthat/test-class_future.R | 9 targets-0.6.0/targets/tests/testthat/test-class_glimpse.R | 108 + targets-0.6.0/targets/tests/testthat/test-class_group.R | 44 targets-0.6.0/targets/tests/testthat/test-class_imports.R | 12 targets-0.6.0/targets/tests/testthat/test-class_inspection.R | 104 + targets-0.6.0/targets/tests/testthat/test-class_keras.R | 5 targets-0.6.0/targets/tests/testthat/test-class_meta.R | 2 targets-0.6.0/targets/tests/testthat/test-class_options.R |only targets-0.6.0/targets/tests/testthat/test-class_parquet.R | 48 targets-0.6.0/targets/tests/testthat/test-class_pattern.R | 40 targets-0.6.0/targets/tests/testthat/test-class_pipeline.R | 2 targets-0.6.0/targets/tests/testthat/test-class_process.R | 14 targets-0.6.0/targets/tests/testthat/test-class_progress.R | 3 targets-0.6.0/targets/tests/testthat/test-class_qs.R | 42 targets-0.6.0/targets/tests/testthat/test-class_rds.R | 7 targets-0.6.0/targets/tests/testthat/test-class_resources.R |only targets-0.6.0/targets/tests/testthat/test-class_resources_aws.R |only targets-0.6.0/targets/tests/testthat/test-class_resources_clustermq.R |only targets-0.6.0/targets/tests/testthat/test-class_resources_feather.R |only targets-0.6.0/targets/tests/testthat/test-class_resources_fst.R |only targets-0.6.0/targets/tests/testthat/test-class_resources_future.R |only targets-0.6.0/targets/tests/testthat/test-class_resources_parquet.R |only targets-0.6.0/targets/tests/testthat/test-class_resources_qs.R |only targets-0.6.0/targets/tests/testthat/test-class_resources_url.R |only targets-0.6.0/targets/tests/testthat/test-class_runtime.R |only targets-0.6.0/targets/tests/testthat/test-class_stem.R | 51 targets-0.6.0/targets/tests/testthat/test-class_store.R | 28 targets-0.6.0/targets/tests/testthat/test-class_store_file.R | 7 targets-0.6.0/targets/tests/testthat/test-class_target.R | 8 targets-0.6.0/targets/tests/testthat/test-class_timestamp.R | 3 targets-0.6.0/targets/tests/testthat/test-class_torch.R | 9 targets-0.6.0/targets/tests/testthat/test-class_url.R | 125 + targets-0.6.0/targets/tests/testthat/test-class_verbose.R | 3 targets-0.6.0/targets/tests/testthat/test-class_visnetwork.R | 73 targets-0.6.0/targets/tests/testthat/test-class_workspace.R | 2 targets-0.6.0/targets/tests/testthat/test-tar_branch_index.R |only targets-0.6.0/targets/tests/testthat/test-tar_branch_names.R |only targets-0.6.0/targets/tests/testthat/test-tar_branches.R | 39 targets-0.6.0/targets/tests/testthat/test-tar_config_set.R | 126 + targets-0.6.0/targets/tests/testthat/test-tar_deduplicate.R | 49 targets-0.6.0/targets/tests/testthat/test-tar_delete.R | 30 targets-0.6.0/targets/tests/testthat/test-tar_destroy.R | 31 targets-0.6.0/targets/tests/testthat/test-tar_engine_knitr.R |only targets-0.6.0/targets/tests/testthat/test-tar_envir.R | 38 targets-0.6.0/targets/tests/testthat/test-tar_exist_meta.R | 29 targets-0.6.0/targets/tests/testthat/test-tar_exist_objects.R | 29 targets-0.6.0/targets/tests/testthat/test-tar_exist_process.R | 29 targets-0.6.0/targets/tests/testthat/test-tar_exist_progress.R | 29 targets-0.6.0/targets/tests/testthat/test-tar_exist_script.R | 18 targets-0.6.0/targets/tests/testthat/test-tar_glimpse.R | 44 targets-0.6.0/targets/tests/testthat/test-tar_invalidate.R | 31 targets-0.6.0/targets/tests/testthat/test-tar_load.R | 35 targets-0.6.0/targets/tests/testthat/test-tar_load_globals.R |only targets-0.6.0/targets/tests/testthat/test-tar_make.R | 79 + targets-0.6.0/targets/tests/testthat/test-tar_make_clustermq.R | 99 + targets-0.6.0/targets/tests/testthat/test-tar_make_future.R | 86 + targets-0.6.0/targets/tests/testthat/test-tar_make_interactive.R |only targets-0.6.0/targets/tests/testthat/test-tar_manifest.R | 45 targets-0.6.0/targets/tests/testthat/test-tar_meta.R | 29 targets-0.6.0/targets/tests/testthat/test-tar_network.R | 126 + targets-0.6.0/targets/tests/testthat/test-tar_newer.R |only targets-0.6.0/targets/tests/testthat/test-tar_older.R |only targets-0.6.0/targets/tests/testthat/test-tar_option_set.R |only targets-0.6.0/targets/tests/testthat/test-tar_outdated.R | 92 + targets-0.6.0/targets/tests/testthat/test-tar_path.R | 24 targets-0.6.0/targets/tests/testthat/test-tar_pid.R | 29 targets-0.6.0/targets/tests/testthat/test-tar_process.R | 29 targets-0.6.0/targets/tests/testthat/test-tar_progress.R | 43 targets-0.6.0/targets/tests/testthat/test-tar_progress_branches.R | 43 targets-0.6.0/targets/tests/testthat/test-tar_progress_summary.R | 33 targets-0.6.0/targets/tests/testthat/test-tar_prune.R | 65 targets-0.6.0/targets/tests/testthat/test-tar_read.R | 35 targets-0.6.0/targets/tests/testthat/test-tar_renv.R | 41 targets-0.6.0/targets/tests/testthat/test-tar_resources.R |only targets-0.6.0/targets/tests/testthat/test-tar_resources_aws.R |only targets-0.6.0/targets/tests/testthat/test-tar_resources_clustermq.R |only targets-0.6.0/targets/tests/testthat/test-tar_resources_feather.R |only targets-0.6.0/targets/tests/testthat/test-tar_resources_fst.R |only targets-0.6.0/targets/tests/testthat/test-tar_resources_future.R |only targets-0.6.0/targets/tests/testthat/test-tar_resources_parquet.R |only targets-0.6.0/targets/tests/testthat/test-tar_resources_qs.R |only targets-0.6.0/targets/tests/testthat/test-tar_resources_url.R |only targets-0.6.0/targets/tests/testthat/test-tar_sitrep.R | 129 + targets-0.6.0/targets/tests/testthat/test-tar_timestamp.R | 43 targets-0.6.0/targets/tests/testthat/test-tar_traceback.R | 38 targets-0.6.0/targets/tests/testthat/test-tar_unscript.R |only targets-0.6.0/targets/tests/testthat/test-tar_validate.R | 42 targets-0.6.0/targets/tests/testthat/test-tar_visnetwork.R | 48 targets-0.6.0/targets/tests/testthat/test-tar_workspace.R | 117 + targets-0.6.0/targets/tests/testthat/test-tar_workspaces.R | 33 targets-0.6.0/targets/tests/testthat/test-utils_ask.R | 6 targets-0.6.0/targets/tests/testthat/test-utils_assert.R | 245 ++- targets-0.6.0/targets/tests/testthat/test-utils_digest.R | 8 targets-0.6.0/targets/tests/testthat/test-utils_logic.R | 7 targets-0.6.0/targets/tests/testthat/test-utils_oop.R | 2 424 files changed, 9264 insertions(+), 3762 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
The package does not require any installation of Microsoft products to be able to write Microsoft
files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] (function body_replace_all_text),
Liz Sander [ctb] (several documentation fixes),
Anton Victorson [ctb] (fixes xml structures),
Jon Calder [ctb] (update vignettes),
John Harrold [ctb] (function annotate_base),
John Muschelli [ctb] (google doc compatibility)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.3.18 dated 2021-04-02 and 0.3.19 dated 2021-07-21
DESCRIPTION | 6 - MD5 | 56 +++++----- NAMESPACE | 1 NEWS.md | 20 +++ R/core_properties.R | 9 + R/docx_add.R | 26 ---- R/docx_add_chunk.R | 3 R/docx_cursor.R | 2 R/docx_img.R | 35 ------ R/docx_part.R | 9 - R/fortify_pptx.R | 5 R/knitr_utils.R | 10 + R/ooxml.R | 8 + R/ooxml_run_objects.R | 32 ++++-- R/ph_location.R | 17 +-- R/ppt_ph_manipulate.R | 2 R/ppt_ph_with_methods.R | 6 - R/pptx_informations.R | 3 R/read_docx.R | 57 ++++++++++ R/read_pptx.R | 4 R/utils.R | 126 +++++++++++++---------- build/vignette.rds |binary inst/doc/overview.html | 212 ---------------------------------------- man/cursor.Rd | 2 man/opts_current_table.Rd | 1 man/ph_add_fpar.Rd | 2 man/run_autonum.Rd | 7 + man/run_word_field.Rd | 2 tests/testthat/test-pptx-info.R | 3 29 files changed, 264 insertions(+), 402 deletions(-)
Title: 'sf'-Based Interface to the 'HERE' REST APIs
Description: Interface to the 'HERE' REST APIs <https://developer.here.com/develop/rest-apis>:
(1) geocode and autosuggest addresses or reverse geocode POIs using the 'Geocoder' API;
(2) route directions, travel distance or time matrices and isolines using the 'Routing', 'Matrix Routing' and 'Isoline Routing' APIs;
(3) request real-time traffic flow and incident information from the 'Traffic' API;
(4) find request public transport connections and nearby stations from the 'Public Transit' API;
(5) request intermodal routes using the 'Intermodal Routing' API;
(6) get weather forecasts, reports on current weather conditions, astronomical
information and alerts at a specific location from the 'Destination Weather' API.
Locations, routes and isolines are returned as 'sf' objects.
Author: Merlin Unterfinger [aut, cre] (<https://orcid.org/0000-0003-2020-2366>),
Daniel Possenriede [ctb] (<https://orcid.org/0000-0002-6738-9845>)
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Diff between hereR versions 0.7.0 dated 2021-04-16 and 0.7.1 dated 2021-07-21
DESCRIPTION | 6 - MD5 | 42 ++++----- NEWS.md | 8 + R/checks.R | 25 +++++ R/connection.R | 14 ++- R/isoline.R | 2 R/route.R | 4 R/route_matrix.R | 21 ---- R/sysdata.rda |binary README.md | 2 build/vignette.rds |binary inst/doc/geocoder.html | 10 +- inst/doc/intermodal.html | 112 ++++++++++++------------ inst/doc/routing.Rmd | 2 inst/doc/routing.html | 98 ++++++++++----------- inst/doc/transit.html | 82 ++++++++--------- inst/doc/weather.html | 179 +++++++++++++++++++-------------------- man/connection.Rd | 3 man/isoline.Rd | 2 man/route.Rd | 4 tests/testthat/test-connection.R | 1 vignettes/routing.Rmd | 2 22 files changed, 324 insertions(+), 295 deletions(-)
Title: Loading Screen for 'Shiny'
Description: Full screen and partial loading screens for 'Shiny' with spinners, progress bars, and notifications.
Author: John Coene [aut, cre],
Jinhwan Kim [ctb],
Victor Granda [ctb] (<https://orcid.org/0000-0002-0469-1991>)
Maintainer: John Coene <jcoenep@gmail.com>
Diff between waiter versions 0.2.2 dated 2021-06-25 and 0.2.3 dated 2021-07-21
waiter-0.2.2/waiter/R/utils-pipe.R |only waiter-0.2.2/waiter/inst/assets/waiter/css-spinners.css |only waiter-0.2.2/waiter/inst/assets/waiter/custom.css |only waiter-0.2.2/waiter/inst/assets/waiter/custom.js |only waiter-0.2.2/waiter/inst/assets/waiter/devloop.css |only waiter-0.2.2/waiter/inst/assets/waiter/loaders.css |only waiter-0.2.2/waiter/inst/assets/waiter/spinbolt.css |only waiter-0.2.2/waiter/inst/assets/waiter/spinkit.css |only waiter-0.2.2/waiter/inst/assets/waiter/spinners.css |only waiter-0.2.2/waiter/inst/assets/waiter/waiter.css |only waiter-0.2.2/waiter/inst/assets/waitress |only waiter-0.2.2/waiter/man/dot-check_session.Rd |only waiter-0.2.2/waiter/man/get_spinner_dependencies.Rd |only waiter-0.2.2/waiter/man/kit.Rd |only waiter-0.2.2/waiter/man/pipe.Rd |only waiter-0.2.2/waiter/man/use_steward.Rd |only waiter-0.2.3/waiter/DESCRIPTION | 12 waiter-0.2.3/waiter/MD5 | 72 -- waiter-0.2.3/waiter/NAMESPACE | 14 waiter-0.2.3/waiter/NEWS.md | 21 waiter-0.2.3/waiter/R/garcon.R | 10 waiter-0.2.3/waiter/R/hostess.R | 12 waiter-0.2.3/waiter/R/spinners.R | 54 - waiter-0.2.3/waiter/R/steward.R | 18 waiter-0.2.3/waiter/R/utils.R | 77 -- waiter-0.2.3/waiter/R/waiter.R | 539 +++++++++++----- waiter-0.2.3/waiter/R/waitress.R | 53 - waiter-0.2.3/waiter/R/zzz.R | 2 waiter-0.2.3/waiter/README.md | 16 waiter-0.2.3/waiter/inst/assets/waiter/waiter.js | 124 ++- waiter-0.2.3/waiter/inst/doc/introduction.Rmd | 8 waiter-0.2.3/waiter/inst/doc/introduction.html | 8 waiter-0.2.3/waiter/inst/packer |only waiter-0.2.3/waiter/man/autoWaiter.Rd |only waiter-0.2.3/waiter/man/garcon.Rd | 3 waiter-0.2.3/waiter/man/hostess.Rd | 3 waiter-0.2.3/waiter/man/hostessLoader.Rd | 4 waiter-0.2.3/waiter/man/steward.Rd |only waiter-0.2.3/waiter/man/triggerWaiter.Rd |only waiter-0.2.3/waiter/man/waiter.Rd | 59 + waiter-0.2.3/waiter/man/waiterClass.Rd | 22 waiter-0.2.3/waiter/man/waiterOptionInternal.Rd | 3 waiter-0.2.3/waiter/man/waiterTheme.Rd | 2 waiter-0.2.3/waiter/man/waitress.Rd | 5 waiter-0.2.3/waiter/vignettes/introduction.Rmd | 8 45 files changed, 717 insertions(+), 432 deletions(-)
Title: Tidy Tuning Tools
Description: The ability to tune models is important. 'tune' contains
functions and classes to be used in conjunction with other
'tidymodels' packages for finding reasonable values of
hyper-parameters in models, pre-processing methods, and
post-processing steps.
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between tune versions 0.1.5 dated 2021-04-23 and 0.1.6 dated 2021-07-21
tune-0.1.5/tune/man/extract_recipe.Rd |only tune-0.1.6/tune/DESCRIPTION | 39 - tune-0.1.6/tune/MD5 | 64 +- tune-0.1.6/tune/NAMESPACE | 21 tune-0.1.6/tune/NEWS.md | 8 tune-0.1.6/tune/R/checks.R | 4 tune-0.1.6/tune/R/extract.R | 343 ++++---------- tune-0.1.6/tune/R/finalize.R | 4 tune-0.1.6/tune/R/grid_code_paths.R | 6 tune-0.1.6/tune/R/grid_helpers.R | 10 tune-0.1.6/tune/R/load_ns.R | 4 tune-0.1.6/tune/R/merge.R | 2 tune-0.1.6/tune/R/outcome-names.R | 4 tune-0.1.6/tune/R/param_set.workflows.R | 6 tune-0.1.6/tune/R/pull.R |only tune-0.1.6/tune/R/reexports.R | 28 + tune-0.1.6/tune/R/tunable.R | 4 tune-0.1.6/tune/R/tune_args.R | 6 tune-0.1.6/tune/R/tune_grid.R | 2 tune-0.1.6/tune/inst/WORDLIST | 3 tune-0.1.6/tune/man/extract-tune.Rd |only tune-0.1.6/tune/man/extract_model.Rd |only tune-0.1.6/tune/man/figures/lifecycle-soft-deprecated.svg |only tune-0.1.6/tune/man/fit_resamples.Rd | 2 tune-0.1.6/tune/man/merge.recipe.Rd | 2 tune-0.1.6/tune/man/parameters.workflow.Rd | 2 tune-0.1.6/tune/man/reexports.Rd | 9 tune-0.1.6/tune/man/tune_args.Rd | 2 tune-0.1.6/tune/man/tune_bayes.Rd | 2 tune-0.1.6/tune/man/tune_grid.Rd | 2 tune-0.1.6/tune/tests/helper-objects.R | 2 tune-0.1.6/tune/tests/testthat/Rplots.pdf |binary tune-0.1.6/tune/tests/testthat/test-extract-helpers.R |only tune-0.1.6/tune/tests/testthat/test-extract.R | 3 tune-0.1.6/tune/tests/testthat/test-misc.R | 2 tune-0.1.6/tune/tests/testthat/test-tunable.R | 5 36 files changed, 283 insertions(+), 308 deletions(-)
Title: The ScottKnott Clustering Algorithm
Description: Perform the balanced (Scott and Knott, 1974) and unbalanced <doi:10.1590/1984-70332017v17n1a1> Scott & Knott algorithm.
Author: Enio Jelihovschi, Jos<e9> Cl<e1>udio Faria and Ivan Bezerra Allaman
Maintainer: Ivan Bezerra Allaman <ivanalaman@gmail.com>
Diff between ScottKnott versions 1.2-7 dated 2018-06-07 and 1.3-0 dated 2021-07-21
ScottKnott-1.2-7/ScottKnott/INDEX |only ScottKnott-1.2-7/ScottKnott/R/SK.aov.R |only ScottKnott-1.2-7/ScottKnott/R/SK.nest.R |only ScottKnott-1.2-7/ScottKnott/R/SK.nest.aov.R |only ScottKnott-1.2-7/ScottKnott/R/SK.nest.default.R |only ScottKnott-1.2-7/ScottKnott/R/m.inf.1a.R |only ScottKnott-1.2-7/ScottKnott/R/m.inf.1b.R |only ScottKnott-1.2-7/ScottKnott/R/m.inf.2a.R |only ScottKnott-1.2-7/ScottKnott/R/m.inf.2b.R |only ScottKnott-1.2-7/ScottKnott/R/m.inf.3a.R |only ScottKnott-1.2-7/ScottKnott/R/m.inf.3b.R |only ScottKnott-1.2-7/ScottKnott/R/summary.SK.nest.R |only ScottKnott-1.2-7/ScottKnott/man/MaxValue.Rd |only ScottKnott-1.2-7/ScottKnott/man/SK.nest.Rd |only ScottKnott-1.2-7/ScottKnott/man/m.inf.Rd |only ScottKnott-1.3-0/ScottKnott/ChangeLog | 11 ScottKnott-1.3-0/ScottKnott/DESCRIPTION | 15 ScottKnott-1.3-0/ScottKnott/MD5 | 79 +- ScottKnott-1.3-0/ScottKnott/NAMESPACE | 38 - ScottKnott-1.3-0/ScottKnott/R/MaxValue.R | 268 ++++--- ScottKnott-1.3-0/ScottKnott/R/SK.R | 9 ScottKnott-1.3-0/ScottKnott/R/SK.aovlist.R | 263 ++++++- ScottKnott-1.3-0/ScottKnott/R/SK.default.R | 58 - ScottKnott-1.3-0/ScottKnott/R/SK.formula.R |only ScottKnott-1.3-0/ScottKnott/R/SK.lm.R |only ScottKnott-1.3-0/ScottKnott/R/SK.lmerMod.R |only ScottKnott-1.3-0/ScottKnott/R/SK.nest.aovlist.R | 639 +++--------------- ScottKnott-1.3-0/ScottKnott/R/SK.nest.lm.R |only ScottKnott-1.3-0/ScottKnott/R/SK.nest.lmerMod.R |only ScottKnott-1.3-0/ScottKnott/R/boxplot.SK.R |only ScottKnott-1.3-0/ScottKnott/R/m.infos.aovlist.R |only ScottKnott-1.3-0/ScottKnott/R/m.infos.lm.R |only ScottKnott-1.3-0/ScottKnott/R/m.infos.lmerMod.R |only ScottKnott-1.3-0/ScottKnott/R/m.infos.nest.aovlist.R |only ScottKnott-1.3-0/ScottKnott/R/m.infos.nest.lm.R |only ScottKnott-1.3-0/ScottKnott/R/m.infos.nest.lmerMod.R |only ScottKnott-1.3-0/ScottKnott/R/plot.SK.R | 307 +++++--- ScottKnott-1.3-0/ScottKnott/R/print.SK.R |only ScottKnott-1.3-0/ScottKnott/R/summary.SK.R | 39 - ScottKnott-1.3-0/ScottKnott/R/xtable.SK.R |only ScottKnott-1.3-0/ScottKnott/README.md | 6 ScottKnott-1.3-0/ScottKnott/demo/CRD.R | 161 ++-- ScottKnott-1.3-0/ScottKnott/demo/FE.R | 265 +------ ScottKnott-1.3-0/ScottKnott/demo/LSD.R | 38 - ScottKnott-1.3-0/ScottKnott/demo/RCBD.R | 71 -- ScottKnott-1.3-0/ScottKnott/demo/SPE.R | 150 +--- ScottKnott-1.3-0/ScottKnott/demo/SPET.R | 197 ++--- ScottKnott-1.3-0/ScottKnott/demo/SSPE.R | 255 +++---- ScottKnott-1.3-0/ScottKnott/inst/CITATION | 4 ScottKnott-1.3-0/ScottKnott/man/SK-internal.Rd |only ScottKnott-1.3-0/ScottKnott/man/SK.Rd | 599 ++++++++++------ ScottKnott-1.3-0/ScottKnott/man/ScottKnott-package.Rd | 479 ++----------- ScottKnott-1.3-0/ScottKnott/man/boxplot.SK.Rd |only ScottKnott-1.3-0/ScottKnott/man/plot.SK.Rd | 146 +--- ScottKnott-1.3-0/ScottKnott/man/print.SK.Rd |only ScottKnott-1.3-0/ScottKnott/man/summary.Rd | 232 ------ ScottKnott-1.3-0/ScottKnott/man/xtable.SK.Rd |only 57 files changed, 1823 insertions(+), 2506 deletions(-)
Title: Replicate and Analyse 'InterVA5'
Description: Provides an R version of the 'InterVA5' software (<http://www.byass.uk/interva/>) for coding cause of death from verbal autopsies. It also provides simple graphical representation of individual and population level statistics.
Author: Jason Thomas [aut, cre],
Zehang Li [aut],
Peter Byass [aut],
Tyler McCormick [aut],
Matthew Boyas [aut],
Sam Clark [aut]
Maintainer: Jason Thomas <jarathomas@gmail.com>
Diff between InterVA5 versions 1.1.0 dated 2020-04-25 and 1.1.3 dated 2021-07-21
InterVA5-1.1.0/InterVA5/R/downloadProbbase.R |only InterVA5-1.1.0/InterVA5/man/download.SCI.Rd |only InterVA5-1.1.0/InterVA5/man/version.SCI.Rd |only InterVA5-1.1.0/InterVA5/tests/testthat/InterVA5_dummy_download_SCI.R |only InterVA5-1.1.0/InterVA5/tests/testthat/tests.InterVA5.download.SCI.R |only InterVA5-1.1.3/InterVA5/DESCRIPTION | 28 +- InterVA5-1.1.3/InterVA5/MD5 | 28 +- InterVA5-1.1.3/InterVA5/NAMESPACE | 2 InterVA5-1.1.3/InterVA5/NEWS.md | 6 InterVA5-1.1.3/InterVA5/R/InterVA5.R | 11 - InterVA5-1.1.3/InterVA5/R/InterVA5.plot.R | 106 ++++++---- InterVA5-1.1.3/InterVA5/R/InterVA5_1.0-package.R | 30 ++ InterVA5-1.1.3/InterVA5/R/globals.R |only InterVA5-1.1.3/InterVA5/data/probbaseV5.rda |binary InterVA5-1.1.3/InterVA5/data/probbaseV5_19.rda |only InterVA5-1.1.3/InterVA5/man/CSMF5.Rd | 13 - InterVA5-1.1.3/InterVA5/man/InterVA5-package.Rd | 4 InterVA5-1.1.3/InterVA5/man/InterVA5.plot.Rd | 10 InterVA5-1.1.3/InterVA5/man/probbaseV5_19.Rd |only 19 files changed, 157 insertions(+), 81 deletions(-)
Title: Index Number Calculation
Description: Computes bilateral and multilateral index numbers.
It has support for many standard bilateral indexes as well as
multilateral index number methods such as GEKS, GEKS-Tornqvist
(or CCDI), Geary-Khamis and the weighted time product dummy
(for details on these methods see Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>).
It also supports updating of multilateral indexes using
several splicing methods.
Author: Graham White
Maintainer: Graham White <g.white@unswalumni.com>
Diff between IndexNumR versions 0.2.0 dated 2021-01-21 and 0.3.0 dated 2021-07-21
DESCRIPTION | 6 +- MD5 | 55 +++++++++++++------------ NAMESPACE | 1 R/bilateral.R | 79 +++++++++++++++++++++++++++--------- R/data.R | 17 +++++++ R/dominicks.R |only R/evaluateMatched.R | 4 - R/geks.R | 37 ++++++++++------ R/gk.R | 8 ++- R/splices.R | 2 R/wtpd.R | 15 +++++- README.md | 12 +++-- build/vignette.rds |binary data/DominicksWeeks.RData |only inst/doc/indexnumr.R | 3 - inst/doc/indexnumr.Rmd | 15 ++++-- inst/doc/indexnumr.html | 83 +++++++++++++++++++++++++++----------- inst/testdata/testData_geks.RData |binary man/DominicksWeeks.Rd |only man/GEKSIndex.Rd | 15 +++++- man/GKIndex.Rd | 3 - man/WTPDIndex.Rd | 3 - man/dominicksData.Rd |only man/priceIndex.Rd | 8 +++ man/quantityIndex.Rd | 8 +++ tests/testthat/test-bilateral.R | 73 +++++++++++++++++++++++++-------- tests/testthat/test-dominicks.R |only tests/testthat/test-geks.R | 42 +++++++++++++++---- tests/testthat/test-gk.R | 43 +++++++++++++++++-- tests/testthat/test-wtpd.R | 41 +++++++++++++++++- vignettes/indexnumr.Rmd | 15 ++++-- 31 files changed, 440 insertions(+), 148 deletions(-)
Title: Tidyverse-Friendly Introductory Linear Regression
Description: Datasets and wrapper functions for tidyverse-friendly introductory linear regression, used in "Statistical Inference via Data Science: A ModernDive into R and the Tidyverse" available at <https://moderndive.com/>.
Author: Albert Y. Kim [aut, cre] (<https://orcid.org/0000-0001-7824-306X>),
Chester Ismay [aut] (<https://orcid.org/0000-0003-2820-2547>),
Andrew Bray [ctb] (<https://orcid.org/0000-0002-4037-7414>),
Delaney Moran [ctb],
Evgeni Chasnovski [ctb] (<https://orcid.org/0000-0002-1617-4019>),
Will Hopper [ctb] (<https://orcid.org/0000-0002-7848-1946>),
Marium Tapal [ctb] (<https://orcid.org/0000-0001-5093-6462>)
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>
Diff between moderndive versions 0.5.1 dated 2021-01-08 and 0.5.2 dated 2021-07-21
moderndive-0.5.1/moderndive/R/bowl.R |only moderndive-0.5.1/moderndive/R/pennies.R |only moderndive-0.5.1/moderndive/inst/doc/why-moderndive.R |only moderndive-0.5.1/moderndive/inst/doc/why-moderndive.Rmd |only moderndive-0.5.1/moderndive/inst/doc/why-moderndive.html |only moderndive-0.5.1/moderndive/vignettes/paper.pdf |only moderndive-0.5.1/moderndive/vignettes/submission.csv |only moderndive-0.5.1/moderndive/vignettes/test.csv |only moderndive-0.5.1/moderndive/vignettes/train.csv |only moderndive-0.5.1/moderndive/vignettes/why-moderndive.Rmd |only moderndive-0.5.2/moderndive/DESCRIPTION | 10 moderndive-0.5.2/moderndive/MD5 | 106 + moderndive-0.5.2/moderndive/NEWS.md | 28 moderndive-0.5.2/moderndive/R/datasets.R | 225 ++-- moderndive-0.5.2/moderndive/R/geom_categorical_model.R | 26 moderndive-0.5.2/moderndive/R/geom_parallel_slopes.R | 16 moderndive-0.5.2/moderndive/R/get_correlation.R | 4 moderndive-0.5.2/moderndive/R/ggplot_parallel_slopes.R | 12 moderndive-0.5.2/moderndive/R/moderndive.R | 2 moderndive-0.5.2/moderndive/R/regression_functions.R | 92 + moderndive-0.5.2/moderndive/R/utils-pipe.R | 2 moderndive-0.5.2/moderndive/build/vignette.rds |binary moderndive-0.5.2/moderndive/inst/doc/moderndive.R |only moderndive-0.5.2/moderndive/inst/doc/moderndive.Rmd |only moderndive-0.5.2/moderndive/inst/doc/moderndive.html |only moderndive-0.5.2/moderndive/inst/doc/paper.R |only moderndive-0.5.2/moderndive/inst/doc/paper.Rmd |only moderndive-0.5.2/moderndive/inst/doc/paper.pdf |only moderndive-0.5.2/moderndive/man/DD_vs_SB.Rd | 22 moderndive-0.5.2/moderndive/man/MA_schools.Rd | 17 moderndive-0.5.2/moderndive/man/bowl.Rd | 32 moderndive-0.5.2/moderndive/man/bowl_sample_1.Rd | 14 moderndive-0.5.2/moderndive/man/bowl_samples.Rd | 30 moderndive-0.5.2/moderndive/man/evals.Rd | 34 moderndive-0.5.2/moderndive/man/figures/interaction-and-parallel-slopes-model-1-1.png |only moderndive-0.5.2/moderndive/man/figures/interaction-and-parallel-slopes-model-2-1.png |only moderndive-0.5.2/moderndive/man/figures/residuals-1-1.png |only moderndive-0.5.2/moderndive/man/figures/residuals-2-1.png |only moderndive-0.5.2/moderndive/man/figures/unnamed-chunk-7-1.png |only moderndive-0.5.2/moderndive/man/geom_categorical_model.Rd | 18 moderndive-0.5.2/moderndive/man/geom_parallel_slopes.Rd | 2 moderndive-0.5.2/moderndive/man/get_correlation.Rd | 2 moderndive-0.5.2/moderndive/man/get_regression_points.Rd | 2 moderndive-0.5.2/moderndive/man/get_regression_summaries.Rd | 2 moderndive-0.5.2/moderndive/man/get_regression_table.Rd | 24 moderndive-0.5.2/moderndive/man/gg_parallel_slopes.Rd | 6 moderndive-0.5.2/moderndive/man/house_prices.Rd | 54 moderndive-0.5.2/moderndive/man/movies_sample.Rd | 18 moderndive-0.5.2/moderndive/man/mythbusters_yawn.Rd | 23 moderndive-0.5.2/moderndive/man/orig_pennies_sample.Rd | 34 moderndive-0.5.2/moderndive/man/pennies.Rd | 28 moderndive-0.5.2/moderndive/man/pennies_resamples.Rd | 23 moderndive-0.5.2/moderndive/man/pennies_sample.Rd | 14 moderndive-0.5.2/moderndive/man/pipe.Rd | 2 moderndive-0.5.2/moderndive/man/promotions.Rd | 12 moderndive-0.5.2/moderndive/man/promotions_shuffled.Rd | 13 moderndive-0.5.2/moderndive/man/tactile_prop_red.Rd | 23 moderndive-0.5.2/moderndive/tests/testthat/test-get_regression_functions.R | 53 moderndive-0.5.2/moderndive/tests/testthat/test-rep_sample_n.R | 2 moderndive-0.5.2/moderndive/vignettes/README.md | 31 moderndive-0.5.2/moderndive/vignettes/_build.sh | 2 moderndive-0.5.2/moderndive/vignettes/moderndive.Rmd |only moderndive-0.5.2/moderndive/vignettes/paper.Rmd |only moderndive-0.5.2/moderndive/vignettes/paper.bib | 12 moderndive-0.5.2/moderndive/vignettes/paper.html |only moderndive-0.5.2/moderndive/vignettes/paper.md | 548 ---------- 66 files changed, 592 insertions(+), 1028 deletions(-)
Title: Text Analysis Utilities
Description: Utilities for text analysis.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Ingo Feinerer [aut],
David Meyer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tau versions 0.0-23 dated 2020-12-16 and 0.0-24 dated 2021-07-21
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/sysdata.rda |binary src/encoding.c | 4 ++-- src/textcnt.c | 2 +- 5 files changed, 10 insertions(+), 10 deletions(-)
Title: Minicircle Sequence Cluster (MSC) Analyses
Description: It establishes a critical framework to manipulate, explore and extract biologically relevant information from mitochondrial minicircle assemblies in tens to hundreds of samples simultaneously and efficiently. This should facilitate research that aims to develop new molecular markers for identifying species-specific minicircles, or to study the ancestry of parasites for complementary insights into their evolutionary history.
Author: Frederik Van den Broeck [aut],
Manon Geerts [aut, cre]
Maintainer: Manon Geerts <mgeerts@itg.be>
Diff between rKOMICS versions 1.0 dated 2021-02-17 and 1.1 dated 2021-07-21
rKOMICS-1.0/rKOMICS/inst/extdata/all.minicircles.circ.id91.uc |only rKOMICS-1.0/rKOMICS/inst/extdata/all.minicircles.circ.id92.uc |only rKOMICS-1.0/rKOMICS/inst/extdata/all.minicircles.circ.id93.uc |only rKOMICS-1.0/rKOMICS/inst/extdata/all.minicircles.circ.id94.uc |only rKOMICS-1.1/rKOMICS/DESCRIPTION | 8 ++--- rKOMICS-1.1/rKOMICS/MD5 | 15 +++++----- rKOMICS-1.1/rKOMICS/R/msc.similarity.R | 1 rKOMICS-1.1/rKOMICS/build/partial.rdb |binary rKOMICS-1.1/rKOMICS/build/vignette.rds |only rKOMICS-1.1/rKOMICS/inst/doc |only rKOMICS-1.1/rKOMICS/vignettes |only 11 files changed, 13 insertions(+), 11 deletions(-)
Title: Restricted Statistical Estimation and Inference for Linear
Models
Description: Allow for easy-to-use testing or evaluating of linear equality and inequality
restrictions about parameters and effects in (generalized) linear statistical models.
Author: Leonard Vanbrabant [aut, cre],
Yves Rosseel [ctb]
Maintainer: Leonard Vanbrabant <info@restriktor.org>
Diff between restriktor versions 0.2-800 dated 2020-02-25 and 0.3-100 dated 2021-07-21
restriktor-0.2-800/restriktor/man/ConTest.Rd |only restriktor-0.3-100/restriktor/DESCRIPTION | 8 restriktor-0.3-100/restriktor/MD5 | 121 restriktor-0.3-100/restriktor/NAMESPACE | 214 restriktor-0.3-100/restriktor/R/Gaussian_Elimination.R | 114 restriktor-0.3-100/restriktor/R/conGLM.R | 754 +-- restriktor-0.3-100/restriktor/R/conGLM_fit.R | 490 +- restriktor-0.3-100/restriktor/R/conLM.R | 754 +-- restriktor-0.3-100/restriktor/R/conMLM.R | 710 +-- restriktor-0.3-100/restriktor/R/conRLM.R | 824 +-- restriktor-0.3-100/restriktor/R/conRLM_fit.R | 404 - restriktor-0.3-100/restriktor/R/conRLM_tests_F_Wald_score.R | 302 - restriktor-0.3-100/restriktor/R/conTest.R | 262 - restriktor-0.3-100/restriktor/R/conTestLavaan_plot.R |only restriktor-0.3-100/restriktor/R/conTest_ceq_conGLM_F_Wald_score.R | 316 - restriktor-0.3-100/restriktor/R/conTest_ceq_conLM_F_Wald_score.R | 374 - restriktor-0.3-100/restriktor/R/conTest_ceq_conRLM_F_Wald_score.R | 292 - restriktor-0.3-100/restriktor/R/conTest_conGLM.R | 1504 +++--- restriktor-0.3-100/restriktor/R/conTest_conLM.R | 1823 ++++---- restriktor-0.3-100/restriktor/R/conTest_conLavaan.R |only restriktor-0.3-100/restriktor/R/conTest_conMLM.R | 512 +- restriktor-0.3-100/restriktor/R/conTest_conRLM.R | 1582 +++---- restriktor-0.3-100/restriktor/R/conTest_print.R | 95 restriktor-0.3-100/restriktor/R/conTest_summary.R | 70 restriktor-0.3-100/restriktor/R/con_augmented_information.R | 202 restriktor-0.3-100/restriktor/R/con_boot.R | 48 restriktor-0.3-100/restriktor/R/con_boot_data.R | 30 restriktor-0.3-100/restriktor/R/con_boot_fixed.R | 28 restriktor-0.3-100/restriktor/R/con_bootstrapD.R |only restriktor-0.3-100/restriktor/R/con_constraints.R | 435 + restriktor-0.3-100/restriktor/R/con_constraints_nonlinear_idx.R |only restriktor-0.3-100/restriktor/R/con_goric.R | 2224 +++++----- restriktor-0.3-100/restriktor/R/con_goric_penalty.R | 72 restriktor-0.3-100/restriktor/R/con_gorica_est.R | 540 +- restriktor-0.3-100/restriktor/R/con_gorica_est_summary.R | 106 restriktor-0.3-100/restriktor/R/con_iht.R | 12 restriktor-0.3-100/restriktor/R/con_loglik.R | 86 restriktor-0.3-100/restriktor/R/con_pbar.R | 26 restriktor-0.3-100/restriktor/R/con_pvalue.R | 890 ++-- restriktor-0.3-100/restriktor/R/con_sandwich.R | 446 +- restriktor-0.3-100/restriktor/R/con_weights.R | 222 restriktor-0.3-100/restriktor/R/restriktor.R | 76 restriktor-0.3-100/restriktor/R/restriktor_print.R | 128 restriktor-0.3-100/restriktor/R/restriktor_print_summary.R | 250 - restriktor-0.3-100/restriktor/R/restriktor_summary.R | 474 +- restriktor-0.3-100/restriktor/R/utilities.R | 275 - restriktor-0.3-100/restriktor/R/zzz.R | 14 restriktor-0.3-100/restriktor/README | 6 restriktor-0.3-100/restriktor/data/FacialBurns.rda |only restriktor-0.3-100/restriktor/inst/NEWS | 124 restriktor-0.3-100/restriktor/man/ConTestC.Rd | 232 - restriktor-0.3-100/restriktor/man/ConTestLRT.Rd | 623 +- restriktor-0.3-100/restriktor/man/ConTestScore.Rd | 640 +- restriktor-0.3-100/restriktor/man/ConTestWald.Rd | 616 +- restriktor-0.3-100/restriktor/man/FacialBurns.Rd |only restriktor-0.3-100/restriktor/man/bootstrapD.Rd |only restriktor-0.3-100/restriktor/man/conTestF.Rd | 666 +- restriktor-0.3-100/restriktor/man/conTest_ceq.Rd | 332 - restriktor-0.3-100/restriktor/man/conTest_methods.Rd | 84 restriktor-0.3-100/restriktor/man/conTest_summary.Rd | 311 - restriktor-0.3-100/restriktor/man/goric.Rd | 367 - restriktor-0.3-100/restriktor/man/iht.Rd |only restriktor-0.3-100/restriktor/man/restriktor-package.rd | 310 - restriktor-0.3-100/restriktor/man/restriktor.Rd | 2 restriktor-0.3-100/restriktor/man/restriktor_methods.Rd | 232 - restriktor-0.3-100/restriktor/tests/testCases.R | 84 66 files changed, 11476 insertions(+), 11262 deletions(-)
Title: Computation and Decomposition of the Mutual Information Index
Description: The Mutual Information Index (M) introduced to social science literature by
Theil and Finizza (1971) <doi:10.1080/0022250X.1971.9989795> is a multigroup
segregation measure that is highly decomposable and that according to Frankel
and Volij (2011) <doi:10.1016/j.jet.2010.10.008> and Mora and Ruiz-Castillo
(2011) <doi:10.1111/j.1467-9531.2011.01237.x> satisfies the Strong Unit
Decomposability and Strong Group Decomposability properties. This package allows
computing and decomposing the total index value into its "between" and
"within" terms. These last terms can also be decomposed into their
contributions, either by group or unit characteristics. The factors that produce
each "within" term can also be displayed at the user's request. The results can
be computed considering a variable or sets of variables that define separate
clusters.
Author: Rafael Fuentealba-Chaura [aut, cre],
Ricardo Mora [aut],
Julio Rojas-Mora [aut],
FONDECYT/ANID Project 11170583 [fnd],
UCT VIP Project FEQUIP2019-INRN-03 [fnd]
Maintainer: Rafael Fuentealba-Chaura <rfuentealba@inf.uct.cl>
Diff between mutualinf versions 1.0.0 dated 2021-07-13 and 1.0.1 dated 2021-07-21
DESCRIPTION | 20 ++++++++++++-------- MD5 | 12 ++++++------ R/mutual.R | 6 +++--- README.md | 41 ++++++++++++++++++++++++++++++++++++++--- build/partial.rdb |binary man/mutual.Rd | 6 +++--- man/mutualinf-package.Rd | 2 +- 7 files changed, 63 insertions(+), 24 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
(<https://orcid.org/0000-0002-0734-2199>),
Christoph Burow [aut, trl, dtc]
(<https://orcid.org/0000-0002-5023-4046>),
Michael Dietze [aut] (<https://orcid.org/0000-0001-6063-1726>),
Margret C. Fuchs [aut] (<https://orcid.org/0000-0001-7210-1132>),
Christoph Schmidt [aut] (<https://orcid.org/0000-0002-2309-3209>),
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] (<https://orcid.org/0000-0002-0805-9547>),
Norbert Mercier [aut] (<https://orcid.org/0000-0002-6375-9108>),
Rachel K. Smedley [ctb] (<https://orcid.org/0000-0001-7773-5193>),
Claire Christophe [ctb],
Antoine Zink [ctb] (<https://orcid.org/0000-0001-7146-1101>),
Julie Durcan [ctb] (<https://orcid.org/0000-0001-8724-8022>),
Georgina E. King [ctb, dtc] (<https://orcid.org/0000-0003-1059-8192>),
Anne Philippe [aut] (<https://orcid.org/0000-0002-5331-5087>),
Guillaume Guerin [ctb] (<https://orcid.org/0000-0001-6298-5579>),
Svenja Riedesel [aut] (<https://orcid.org/0000-0003-2936-8776>),
Martin Autzen [aut] (<https://orcid.org/0000-0001-6249-426X>),
Pierre Guibert [ctb] (<https://orcid.org/0000-0001-8969-8684>),
Dirk Mittelstrass [aut] (<https://orcid.org/0000-0002-9567-8791>),
Harrison J. Gray [aut] (<https://orcid.org/0000-0002-4555-7473>),
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@aber.ac.uk>
Diff between Luminescence versions 0.9.13 dated 2021-06-03 and 0.9.14 dated 2021-07-21
DESCRIPTION | 28 MD5 | 280 +++---- NEWS.md | 843 +----------------------- R/RLum.Analysis-class.R | 34 R/analyse_FadingMeasurement.R | 180 +++-- R/calc_FiniteMixture.R | 37 - R/methods_RLum.R | 4 R/plot_AbanicoPlot.R | 19 R/plot_RLum.Analysis.R | 35 R/plot_RLum.Results.R | 37 - R/read_SPE2R.R | 2 README.md | 2 build/partial.rdb |binary man/Analyse_SAR.OSLdata.Rd | 2 man/CW2pHMi.Rd | 2 man/CW2pLM.Rd | 2 man/CW2pLMi.Rd | 2 man/CW2pPMi.Rd | 2 man/GitHub-API.Rd | 2 man/PSL2Risoe.BINfileData.Rd | 2 man/RLum-class.Rd | 2 man/RLum.Analysis-class.Rd | 4 man/RLum.Data.Curve-class.Rd | 2 man/RLum.Data.Image-class.Rd | 2 man/RLum.Data.Spectrum-class.Rd | 2 man/RLum.Results-class.Rd | 2 man/Risoe.BINfileData-class.Rd | 2 man/Risoe.BINfileData2RLum.Analysis.Rd | 2 man/Second2Gray.Rd | 2 man/analyse_Al2O3C_CrossTalk.Rd | 2 man/analyse_Al2O3C_ITC.Rd | 2 man/analyse_Al2O3C_Measurement.Rd | 2 man/analyse_FadingMeasurement.Rd | 53 + man/analyse_IRSAR.RF.Rd | 2 man/analyse_SAR.CWOSL.Rd | 2 man/analyse_SAR.TL.Rd | 2 man/analyse_baSAR.Rd | 2 man/analyse_pIRIRSequence.Rd | 2 man/analyse_portableOSL.Rd | 2 man/app_RLum.Rd | 2 man/apply_CosmicRayRemoval.Rd | 2 man/apply_EfficiencyCorrection.Rd | 2 man/bin_RLum.Data.Rd | 2 man/calc_AliquotSize.Rd | 2 man/calc_AverageDose.Rd | 2 man/calc_CentralDose.Rd | 2 man/calc_CobbleDoseRate.Rd | 2 man/calc_CommonDose.Rd | 2 man/calc_CosmicDoseRate.Rd | 2 man/calc_FadingCorr.Rd | 2 man/calc_FastRatio.Rd | 2 man/calc_FiniteMixture.Rd | 12 man/calc_FuchsLang2001.Rd | 2 man/calc_HomogeneityTest.Rd | 2 man/calc_Huntley2006.Rd | 2 man/calc_IEU.Rd | 2 man/calc_Kars2008.Rd | 2 man/calc_Lamothe2003.Rd | 2 man/calc_MaxDose.Rd | 2 man/calc_MinDose.Rd | 2 man/calc_OSLLxTxDecomposed.Rd | 2 man/calc_OSLLxTxRatio.Rd | 2 man/calc_SourceDoseRate.Rd | 2 man/calc_Statistics.Rd | 2 man/calc_TLLxTxRatio.Rd | 2 man/calc_ThermalLifetime.Rd | 2 man/calc_WodaFuchs2008.Rd | 2 man/calc_gSGC.Rd | 2 man/calc_gSGC_feldspar.Rd | 2 man/convert_Activity2Concentration.Rd | 2 man/convert_BIN2CSV.Rd | 2 man/convert_Concentration2DoseRate.Rd | 2 man/convert_Daybreak2CSV.Rd | 2 man/convert_PSL2CSV.Rd | 2 man/convert_RLum2Risoe.BINfileData.Rd | 2 man/convert_SG2MG.Rd | 2 man/convert_Wavelength2Energy.Rd | 2 man/convert_XSYG2CSV.Rd | 2 man/extract_IrradiationTimes.Rd | 2 man/fit_CWCurve.Rd | 2 man/fit_LMCurve.Rd | 2 man/fit_OSLLifeTimes.Rd | 2 man/fit_SurfaceExposure.Rd | 2 man/fit_ThermalQuenching.Rd | 2 man/get_Layout.Rd | 2 man/get_Quote.Rd | 2 man/get_RLum.Rd | 2 man/get_Risoe.BINfileData.Rd | 2 man/get_rightAnswer.Rd | 2 man/length_RLum.Rd | 2 man/merge_RLum.Analysis.Rd | 2 man/merge_RLum.Data.Curve.Rd | 2 man/merge_RLum.Rd | 2 man/merge_RLum.Results.Rd | 2 man/merge_Risoe.BINfileData.Rd | 2 man/methods_RLum.Rd | 4 man/names_RLum.Rd | 2 man/plot_AbanicoPlot.Rd | 9 man/plot_DRCSummary.Rd | 2 man/plot_DRTResults.Rd | 2 man/plot_DetPlot.Rd | 2 man/plot_FilterCombinations.Rd | 2 man/plot_GrowthCurve.Rd | 2 man/plot_Histogram.Rd | 2 man/plot_KDE.Rd | 2 man/plot_NRt.Rd | 2 man/plot_RLum.Analysis.Rd | 12 man/plot_RLum.Data.Curve.Rd | 2 man/plot_RLum.Data.Image.Rd | 2 man/plot_RLum.Data.Spectrum.Rd | 2 man/plot_RLum.Rd | 2 man/plot_RLum.Results.Rd | 2 man/plot_ROI.Rd | 2 man/plot_RadialPlot.Rd | 2 man/plot_Risoe.BINfileData.Rd | 2 man/plot_ViolinPlot.Rd | 2 man/read_BIN2R.Rd | 2 man/read_Daybreak2R.Rd | 2 man/read_PSL2R.Rd | 2 man/read_RF2R.Rd | 2 man/read_SPE2R.Rd | 5 man/read_TIFF2R.Rd | 2 man/read_XSYG2R.Rd | 2 man/replicate_RLum.Rd | 2 man/report_RLum.Rd | 2 man/sTeve.Rd | 2 man/scale_GammaDose.Rd | 2 man/set_RLum.Rd | 2 man/set_Risoe.BINfileData.Rd | 2 man/smooth_RLum.Rd | 2 man/structure_RLum.Rd | 2 man/template_DRAC.Rd | 2 man/tune_Data.Rd | 2 man/use_DRAC.Rd | 2 man/verify_SingleGrainData.Rd | 2 man/write_R2BIN.Rd | 2 man/write_RLum2CSV.Rd | 2 src/RcppExports.cpp | 5 tests/testthat/test_analyse_FadingMeasurement.R | 83 ++ tests/testthat/test_calc_FiniteMixture.R | 37 - tests/testthat/test_plot_RLum.Analysis.R | 11 141 files changed, 692 insertions(+), 1278 deletions(-)
Title: Lightweight Access to the 'Geospatial Data Abstraction Library'
('GDAL')
Description: Provides low-level access to 'GDAL' functionality for R packages.
'GDAL' is the 'Geospatial Data Abstraction Library' a translator for raster and vector geospatial data formats
that presents a single raster abstract data model and single vector abstract data model to the calling application
for all supported formats <https://gdal.org/>.
Author: Michael Sumner [aut, cre] (<https://orcid.org/0000-0002-2471-7511>),
Simon Wotherspoon [ctb] (figured out the mechanism for the resampling
algorithm),
Mark Padgham [ctb] (helped get started :)),
Edzer Pebesma [ctb] (wrote allocate_attribute, copied here from sf),
Roger Bivand [ctb] (wrote configure.ac, adapted here from rgdal),
Jim Hester [ctb] (wrote CollectorList.h, copied here from fs package),
Timothy Keitt [ctb] (wrote GetPointsInternal copied here from rgdal2
package),
Jeroen Ooms [ctb] (tweaked build process, provided Windows build tools),
Dale Maschette [ctb] (created the hex logo),
Joseph Stachelek [ctb],
Even Rouault [ctb] (primary author of the COG format and its use of the
GDALwarp app-library, example code used by the warper function
here),
Robert Hijmans [ctb] (wrote some source in the warper, terra package
used as example/inspiration)
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between vapour versions 0.7.0 dated 2021-07-04 and 0.7.5 dated 2021-07-21
DESCRIPTION | 6 - MD5 | 28 ++-- NEWS.md | 10 + R/raster-input.R | 20 ++- R/vapour_input_geometry.R | 2 README.md | 17 --- inst/doc/feature-access.Rmd | 2 inst/doc/feature-access.html | 2 inst/doc/vapour.html | 6 - inst/include/gdalwarpmem/gdalwarpmem.h | 185 ++++++++++++++++----------------- man/vapour_layer_info.Rd | 2 man/vapour_warp_raster.Rd | 10 + src/RcppExports.cpp | 5 tests/testthat/test-test-on-rhub.R | 2 vignettes/feature-access.Rmd | 2 15 files changed, 154 insertions(+), 145 deletions(-)
Title: Utilities for Scoring and Assessing Predictions
Description: Combines a collection of metrics and proper scoring rules
(Tilmann Gneiting & Adrian E Raftery (2007)
<doi:10.1198/016214506000001437>) with an easy to
use wrapper that can be used to automatically evaluate predictions.
Apart from proper scoring rules functions are provided to assess bias,
sharpness and calibration (Sebastian Funk, Anton Camacho, Adam J. Kucharski,
Rachel Lowe, Rosalind M. Eggo, W. John Edmunds (2019)
<doi:10.1371/journal.pcbi.1006785>) of forecasts.
Several types of predictions can be evaluated:
probabilistic forecasts (generally
predictive samples generated by Markov Chain Monte Carlo procedures),
quantile forecasts or point forecasts. Observed values and predictions
can be either continuous, integer, or binary. Users can either choose
to apply these rules separately in a vector / matrix format that can
be flexibly used within other packages, or they can choose to do an
automatic evaluation of their forecasts. This is implemented with
'data.table' and provides a consistent and very efficient framework for
evaluating various types of predictions.
Author: Nikos Bosse [aut, cre] (<https://orcid.org/0000-0002-7750-5280>),
Sam Abbott [aut] (<https://orcid.org/0000-0001-8057-8037>),
Johannes Bracher [ctb] (<https://orcid.org/0000-0002-3777-1410>),
Joel Hellewell [ctb] (<https://orcid.org/0000-0003-2683-0849>),
Sophie Meakins [ctb],
James Munday [ctb],
Katharine Sherratt [ctb],
Sebastian Funk [aut]
Maintainer: Nikos Bosse <nikosbosse@gmail.com>
Diff between scoringutils versions 0.1.7 dated 2021-07-14 and 0.1.7.2 dated 2021-07-21
DESCRIPTION | 10 ++--- MD5 | 29 ++++++++------- R/eval_forecasts_binary.R | 6 +-- R/eval_forecasts_continuous_integer.R | 2 - R/eval_forecasts_quantile.R | 35 ++++++++++-------- R/pairwise-comparisons.R | 3 - inst/doc/scoringutils.html | 63 ++++++++++++++++------------------ man/figures/unnamed-chunk-3-1.png |binary man/figures/unnamed-chunk-4-1.png |binary man/figures/unnamed-chunk-5-1.png |binary man/figures/unnamed-chunk-5-2.png |binary man/figures/unnamed-chunk-6-1.png |binary man/figures/unnamed-chunk-8-1.png |only man/pairwise_comparison.Rd | 3 - tests/testthat/test-eval_forecasts.R | 16 ++++++++ tests/testthat/test-interval_score.R | 3 + 16 files changed, 94 insertions(+), 76 deletions(-)
Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a
model without having to remember the different argument names across
different functions or computational engines (e.g. 'R', 'Spark',
'Stan', etc).
Author: Max Kuhn [aut, cre],
Davis Vaughan [aut],
Emil Hvitfeldt [ctb],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between parsnip versions 0.1.6 dated 2021-05-27 and 0.1.7 dated 2021-07-21
parsnip-0.1.6/parsnip/man/rmd/boost-tree.Rmd |only parsnip-0.1.6/parsnip/man/rmd/decision-tree.Rmd |only parsnip-0.1.6/parsnip/man/rmd/linear-reg.Rmd |only parsnip-0.1.6/parsnip/man/rmd/mars.Rmd |only parsnip-0.1.6/parsnip/man/rmd/mlp.Rmd |only parsnip-0.1.6/parsnip/man/rmd/multinom-reg.Rmd |only parsnip-0.1.6/parsnip/man/rmd/rand-forest.Rmd |only parsnip-0.1.6/parsnip/man/rmd/svm-linear.Rmd |only parsnip-0.1.6/parsnip/man/rmd/svm-poly.Rmd |only parsnip-0.1.6/parsnip/man/rmd/svm-rbf.Rmd |only parsnip-0.1.6/parsnip/vignettes/articles/Classification.Rmd |only parsnip-0.1.6/parsnip/vignettes/articles/Models.Rmd |only parsnip-0.1.6/parsnip/vignettes/articles/Regression.Rmd |only parsnip-0.1.6/parsnip/vignettes/articles/Scratch.Rmd |only parsnip-0.1.7/parsnip/DESCRIPTION | 57 +- parsnip-0.1.7/parsnip/MD5 | 283 ++++++---- parsnip-0.1.7/parsnip/NAMESPACE | 23 parsnip-0.1.7/parsnip/NEWS.md | 29 - parsnip-0.1.7/parsnip/R/aaa.R | 53 + parsnip-0.1.7/parsnip/R/aaa_models.R | 279 +++++++++ parsnip-0.1.7/parsnip/R/aaa_multi_predict.R | 11 parsnip-0.1.7/parsnip/R/arguments.R | 4 parsnip-0.1.7/parsnip/R/augment.R | 22 parsnip-0.1.7/parsnip/R/boost_tree.R | 105 +-- parsnip-0.1.7/parsnip/R/boost_tree_C5.0.R |only parsnip-0.1.7/parsnip/R/boost_tree_spark.R |only parsnip-0.1.7/parsnip/R/boost_tree_xgboost.R |only parsnip-0.1.7/parsnip/R/control_parsnip.R | 2 parsnip-0.1.7/parsnip/R/convert_data.R | 203 ++++--- parsnip-0.1.7/parsnip/R/decision_tree.R | 82 -- parsnip-0.1.7/parsnip/R/decision_tree_C5.0.R |only parsnip-0.1.7/parsnip/R/decision_tree_rpart.R |only parsnip-0.1.7/parsnip/R/decision_tree_spark.R |only parsnip-0.1.7/parsnip/R/descriptors.R | 12 parsnip-0.1.7/parsnip/R/engines.R | 29 - parsnip-0.1.7/parsnip/R/extract.R |only parsnip-0.1.7/parsnip/R/fit.R | 2 parsnip-0.1.7/parsnip/R/fit_helpers.R | 4 parsnip-0.1.7/parsnip/R/gen_additive_mod.R |only parsnip-0.1.7/parsnip/R/gen_additive_mod_data.R |only parsnip-0.1.7/parsnip/R/gen_additive_mod_mgcv.R |only parsnip-0.1.7/parsnip/R/glmnet_details.R |only parsnip-0.1.7/parsnip/R/linear_reg.R | 136 +--- parsnip-0.1.7/parsnip/R/linear_reg_data.R | 2 parsnip-0.1.7/parsnip/R/linear_reg_glmnet.R |only parsnip-0.1.7/parsnip/R/linear_reg_keras.R |only parsnip-0.1.7/parsnip/R/linear_reg_lm.R |only parsnip-0.1.7/parsnip/R/linear_reg_spark.R |only parsnip-0.1.7/parsnip/R/linear_reg_stan.R |only parsnip-0.1.7/parsnip/R/logistic_reg.R | 77 -- parsnip-0.1.7/parsnip/R/logistic_reg_LiblineaR.R |only parsnip-0.1.7/parsnip/R/logistic_reg_data.R | 24 parsnip-0.1.7/parsnip/R/logistic_reg_glm.R |only parsnip-0.1.7/parsnip/R/logistic_reg_glmnet.R |only parsnip-0.1.7/parsnip/R/logistic_reg_keras.R |only parsnip-0.1.7/parsnip/R/logistic_reg_spark.R |only parsnip-0.1.7/parsnip/R/logistic_reg_stan.R |only parsnip-0.1.7/parsnip/R/mars.R | 57 -- parsnip-0.1.7/parsnip/R/mars_earth.R |only parsnip-0.1.7/parsnip/R/misc.R | 62 ++ parsnip-0.1.7/parsnip/R/mlp.R | 65 -- parsnip-0.1.7/parsnip/R/mlp_keras.R |only parsnip-0.1.7/parsnip/R/mlp_nnet.R |only parsnip-0.1.7/parsnip/R/model_object_docs.R | 4 parsnip-0.1.7/parsnip/R/multinom_reg.R | 94 --- parsnip-0.1.7/parsnip/R/multinom_reg_glmnet.R |only parsnip-0.1.7/parsnip/R/multinom_reg_keras.R |only parsnip-0.1.7/parsnip/R/multinom_reg_nnet.R |only parsnip-0.1.7/parsnip/R/multinom_reg_spark.R |only parsnip-0.1.7/parsnip/R/nearest_neighbor.R | 57 -- parsnip-0.1.7/parsnip/R/nearest_neighbor_kknn.R |only parsnip-0.1.7/parsnip/R/nullmodel.R | 11 parsnip-0.1.7/parsnip/R/predict.R | 4 parsnip-0.1.7/parsnip/R/proportional_hazards.R | 19 parsnip-0.1.7/parsnip/R/rand_forest.R | 76 -- parsnip-0.1.7/parsnip/R/rand_forest_randomForest.R |only parsnip-0.1.7/parsnip/R/rand_forest_ranger.R |only parsnip-0.1.7/parsnip/R/rand_forest_spark.R |only parsnip-0.1.7/parsnip/R/reexports.R | 8 parsnip-0.1.7/parsnip/R/surv_reg.R | 24 parsnip-0.1.7/parsnip/R/survival_reg.R | 17 parsnip-0.1.7/parsnip/R/svm_linear.R | 60 -- parsnip-0.1.7/parsnip/R/svm_linear_LiblineaR.R |only parsnip-0.1.7/parsnip/R/svm_linear_kernlab.R |only parsnip-0.1.7/parsnip/R/svm_poly.R | 63 -- parsnip-0.1.7/parsnip/R/svm_poly_kernlab.R |only parsnip-0.1.7/parsnip/R/svm_rbf.R | 65 +- parsnip-0.1.7/parsnip/R/svm_rbf_kernlab.R |only parsnip-0.1.7/parsnip/R/translate.R | 9 parsnip-0.1.7/parsnip/build/parsnip.pdf |only parsnip-0.1.7/parsnip/build/vignette.rds |binary parsnip-0.1.7/parsnip/inst/doc/parsnip_Intro.html | 9 parsnip-0.1.7/parsnip/man/C5.0_train.Rd | 3 parsnip-0.1.7/parsnip/man/augment.Rd | 5 parsnip-0.1.7/parsnip/man/boost_tree.Rd | 234 +------- parsnip-0.1.7/parsnip/man/control_parsnip.Rd | 2 parsnip-0.1.7/parsnip/man/convert_helpers.Rd |only parsnip-0.1.7/parsnip/man/decision_tree.Rd | 167 ----- parsnip-0.1.7/parsnip/man/details_boost_tree_C5.0.Rd |only parsnip-0.1.7/parsnip/man/details_boost_tree_spark.Rd |only parsnip-0.1.7/parsnip/man/details_boost_tree_xgboost.Rd |only parsnip-0.1.7/parsnip/man/details_decision_tree_C5.0.Rd |only 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parsnip-0.1.7/parsnip/man/rmd/boost_tree_xgboost.Rmd |only parsnip-0.1.7/parsnip/man/rmd/decision_tree_C5.0.Rmd |only parsnip-0.1.7/parsnip/man/rmd/decision_tree_rpart.Rmd |only parsnip-0.1.7/parsnip/man/rmd/decision_tree_spark.Rmd |only parsnip-0.1.7/parsnip/man/rmd/gen_additive_mod_mgcv.Rmd |only parsnip-0.1.7/parsnip/man/rmd/glmnet-details.Rmd |only parsnip-0.1.7/parsnip/man/rmd/linear_reg_glmnet.Rmd |only parsnip-0.1.7/parsnip/man/rmd/linear_reg_keras.Rmd |only parsnip-0.1.7/parsnip/man/rmd/linear_reg_lm.Rmd |only parsnip-0.1.7/parsnip/man/rmd/linear_reg_spark.Rmd |only parsnip-0.1.7/parsnip/man/rmd/linear_reg_stan.Rmd |only parsnip-0.1.7/parsnip/man/rmd/logistic_reg_LiblineaR.Rmd |only parsnip-0.1.7/parsnip/man/rmd/logistic_reg_glm.Rmd |only parsnip-0.1.7/parsnip/man/rmd/logistic_reg_glmnet.Rmd |only parsnip-0.1.7/parsnip/man/rmd/logistic_reg_keras.Rmd |only parsnip-0.1.7/parsnip/man/rmd/logistic_reg_spark.Rmd |only parsnip-0.1.7/parsnip/man/rmd/logistic_reg_stan.Rmd |only parsnip-0.1.7/parsnip/man/rmd/mars_earth.Rmd |only parsnip-0.1.7/parsnip/man/rmd/mlp_keras.Rmd |only parsnip-0.1.7/parsnip/man/rmd/mlp_nnet.Rmd |only parsnip-0.1.7/parsnip/man/rmd/multinom_reg_glmnet.Rmd |only parsnip-0.1.7/parsnip/man/rmd/multinom_reg_keras.Rmd |only parsnip-0.1.7/parsnip/man/rmd/multinom_reg_nnet.Rmd |only parsnip-0.1.7/parsnip/man/rmd/multinom_reg_spark.Rmd |only parsnip-0.1.7/parsnip/man/rmd/nearest_neighbor_kknn.Rmd |only parsnip-0.1.7/parsnip/man/rmd/rand_forest_randomForest.Rmd |only parsnip-0.1.7/parsnip/man/rmd/rand_forest_ranger.Rmd |only parsnip-0.1.7/parsnip/man/rmd/rand_forest_spark.Rmd |only parsnip-0.1.7/parsnip/man/rmd/setup.Rmd | 28 parsnip-0.1.7/parsnip/man/rmd/svm_linear_LiblineaR.Rmd |only parsnip-0.1.7/parsnip/man/rmd/svm_linear_kernlab.Rmd |only parsnip-0.1.7/parsnip/man/rmd/svm_poly_kernlab.Rmd |only parsnip-0.1.7/parsnip/man/rmd/svm_rbf_kernlab.Rmd |only parsnip-0.1.7/parsnip/man/rmd/template-makes-dummies.Rmd |only parsnip-0.1.7/parsnip/man/rmd/template-same-scale.Rmd |only parsnip-0.1.7/parsnip/man/rmd/template-spark-notes.Rmd |only parsnip-0.1.7/parsnip/man/rmd/template-tree-split-factors.Rmd |only parsnip-0.1.7/parsnip/man/set_new_model.Rd | 2 parsnip-0.1.7/parsnip/man/surv_reg.Rd | 24 parsnip-0.1.7/parsnip/man/survival_reg.Rd | 16 parsnip-0.1.7/parsnip/man/svm_linear.Rd | 135 +--- parsnip-0.1.7/parsnip/man/svm_poly.Rd | 102 +-- parsnip-0.1.7/parsnip/man/svm_rbf.Rd | 109 +-- parsnip-0.1.7/parsnip/tests/testthat/test-extract.R |only parsnip-0.1.7/parsnip/tests/testthat/test_args_and_modes.R | 55 + parsnip-0.1.7/parsnip/tests/testthat/test_boost_tree_xgboost.R | 9 parsnip-0.1.7/parsnip/tests/testthat/test_convert_data.R | 102 +-- parsnip-0.1.7/parsnip/tests/testthat/test_decision_tree.R | 14 parsnip-0.1.7/parsnip/tests/testthat/test_default_engines.R |only parsnip-0.1.7/parsnip/tests/testthat/test_gen_additive_model.R |only parsnip-0.1.7/parsnip/tests/testthat/test_linear_reg.R | 8 parsnip-0.1.7/parsnip/tests/testthat/test_logistic_reg.R | 8 parsnip-0.1.7/parsnip/tests/testthat/test_packages.R | 3 parsnip-0.1.7/parsnip/vignettes/articles/Examples.Rmd |only parsnip-0.1.7/parsnip/vignettes/articles/template-cls-multi-class.R |only parsnip-0.1.7/parsnip/vignettes/articles/template-cls-two-class.R |only parsnip-0.1.7/parsnip/vignettes/articles/template-reg-chicago.R |only 211 files changed, 1766 insertions(+), 2658 deletions(-)
Title: An Implementation of Matrix Mathematics
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre] (<https://orcid.org/0000-0002-7438-214X>)
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsbyname versions 0.4.19 dated 2021-07-18 and 0.4.20 dated 2021-07-21
DESCRIPTION | 8 ++-- MD5 | 18 ++++----- NAMESPACE | 1 NEWS.md | 9 ++++ R/notation.R | 67 ++++++++++++++++++++++++++----------- inst/CITATION | 4 +- inst/doc/applybyname-vignette.html | 4 +- inst/doc/matsbyname.html | 4 +- man/row-col-notation.Rd | 47 +++++++++++++++---------- tests/testthat/test-notation.R | 51 +++++++++++++++++++++++++++- 10 files changed, 154 insertions(+), 59 deletions(-)
More information about influxdbclient at CRAN
Permanent link
More information about ConfusionTableR at CRAN
Permanent link
Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Tools to help download, process and analyse the UK road collision data collected using the
'STATS19' form. The data are provided as 'CSV' files with detailed road safety data about the
circumstances of car crashes and other incidents on the roads resulting in
casualties in Great Britain from 1979, the types
(including make and model) of vehicles involved and the consequential casualties. The
statistics relate only to personal casualties on public roads that are reported
to the police, and subsequently recorded, using the 'STATS19' accident reporting form. See
the Department for Transport website
<https://data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-safety-data> for more
information on these data.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Layik Hama [aut] (<https://orcid.org/0000-0003-1912-4890>),
Mark Padgham [aut] (<https://orcid.org/0000-0003-2172-5265>),
David Ranzolin [rev],
Adam Sparks [rev, ctb] (<https://orcid.org/0000-0002-0061-8359>),
Ivo Wengraf [ctb],
RAC Foundation [fnd]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stats19 versions 1.4.1 dated 2021-03-28 and 1.4.3 dated 2021-07-21
DESCRIPTION | 6 - MD5 | 44 ++++++------ NEWS.md | 10 ++ R/dl.R | 4 - R/get.R | 2 R/mot.R | 34 ++++----- R/read.R | 12 +++ R/ulez.R | 1 build/vignette.rds |binary inst/doc/blog.Rmd | 2 inst/doc/blog.html | 6 - inst/doc/stats19-training-setup.Rmd | 3 inst/doc/stats19-training-setup.html | 2 inst/doc/stats19-training.R | 126 ++++++++++++++++++----------------- inst/doc/stats19-training.Rmd | 12 ++- inst/doc/stats19-training.html | 25 +----- inst/doc/stats19.Rmd | 2 inst/doc/stats19.html | 6 - tests/testthat/test-get.R | 12 +-- vignettes/blog.Rmd | 2 vignettes/stats19-training-setup.Rmd | 3 vignettes/stats19-training.Rmd | 12 ++- vignettes/stats19.Rmd | 2 23 files changed, 178 insertions(+), 150 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.7.2 dated 2021-06-04 and 1.8.2 dated 2021-07-21
RCzechia-1.7.2/RCzechia/man/downloader.Rd |only RCzechia-1.7.2/RCzechia/man/ok_to_proceed.Rd |only RCzechia-1.7.2/RCzechia/tests/testthat/test-1-data-structures.R |only RCzechia-1.8.2/RCzechia/DESCRIPTION | 9 - RCzechia-1.8.2/RCzechia/MD5 | 89 +++++----- RCzechia-1.8.2/RCzechia/NEWS.md | 12 + RCzechia-1.8.2/RCzechia/R/casti.R | 2 RCzechia-1.8.2/RCzechia/R/chr_uzemi.R | 2 RCzechia-1.8.2/RCzechia/R/downloader.R | 6 RCzechia-1.8.2/RCzechia/R/geocode.R | 2 RCzechia-1.8.2/RCzechia/R/kraje.R | 2 RCzechia-1.8.2/RCzechia/R/lesy.R | 2 RCzechia-1.8.2/RCzechia/R/obce_body.R | 2 RCzechia-1.8.2/RCzechia/R/obce_polygony.R | 2 RCzechia-1.8.2/RCzechia/R/ok_to_proceed.R | 4 RCzechia-1.8.2/RCzechia/R/okresy.R | 2 RCzechia-1.8.2/RCzechia/R/orp_polygony.R | 2 RCzechia-1.8.2/RCzechia/R/plochy.R | 11 - RCzechia-1.8.2/RCzechia/R/reky.R | 14 - RCzechia-1.8.2/RCzechia/R/republika.R | 4 RCzechia-1.8.2/RCzechia/R/senat_obvody.R | 6 RCzechia-1.8.2/RCzechia/R/silnice.R | 8 RCzechia-1.8.2/RCzechia/R/volebni_okrsky.R | 4 RCzechia-1.8.2/RCzechia/R/vyskopis.R | 4 RCzechia-1.8.2/RCzechia/R/zeleznice.R | 11 - RCzechia-1.8.2/RCzechia/R/zip_codes.R | 4 RCzechia-1.8.2/RCzechia/README.md | 20 -- RCzechia-1.8.2/RCzechia/inst/doc/vignette.R | 4 RCzechia-1.8.2/RCzechia/inst/doc/vignette.Rmd | 10 - RCzechia-1.8.2/RCzechia/inst/doc/vignette.html | 17 + RCzechia-1.8.2/RCzechia/man/dot-downloader.Rd |only RCzechia-1.8.2/RCzechia/man/dot-ok_to_proceed.Rd |only RCzechia-1.8.2/RCzechia/man/plochy.Rd | 9 - RCzechia-1.8.2/RCzechia/man/reky.Rd | 10 - RCzechia-1.8.2/RCzechia/man/republika.Rd | 2 RCzechia-1.8.2/RCzechia/man/senat_obvody.Rd | 2 RCzechia-1.8.2/RCzechia/man/silnice.Rd | 6 RCzechia-1.8.2/RCzechia/man/zeleznice.Rd | 9 - RCzechia-1.8.2/RCzechia/tests/testthat/test-1-casti.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-chr-uzemi.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-ctverce.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-kraje.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-lesy.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-obce.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-okresy.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-orp.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-relief.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-republika.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-transport.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-vodstvo.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-volby.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-1-zip-codes.R |only RCzechia-1.8.2/RCzechia/tests/testthat/test-2-code.R | 12 - RCzechia-1.8.2/RCzechia/tests/testthat/test-3-integrace.R | 43 ++++ RCzechia-1.8.2/RCzechia/vignettes/vignette.Rmd | 10 - 55 files changed, 203 insertions(+), 155 deletions(-)
Title: Visualizing Panel Data
Description: Visualizes panel data. It has two main functionalities: (1) it visualizes the treatment and missing-value statuses of each observation in a panel/time-series-cross-sectional (TSCS) dataset; and (2) it plots the outcome variable (either continuous or discrete) in a time-series fashion.
Author: Licheng Liu, Yiqing Xu
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between panelView versions 1.1.2 dated 2019-03-13 and 1.1.5 dated 2021-07-21
DESCRIPTION | 12 MD5 | 15 R/panelView.R | 3200 +++++++++++++++++++++++------------------------ R/zzz.r |only README.md | 4 man/capacity.Rd | 26 man/panelView-package.Rd | 2 man/panelView.Rd | 17 man/turnout.Rd | 36 9 files changed, 1674 insertions(+), 1638 deletions(-)
Title: Side Grammar Graphics
Description: The grammar of graphics as shown in 'ggplot2' has provided
an expressive API for users to build plots. 'ggside' extends 'ggplot2'
by allowing users to add graphical information about one of the main panel's
axis using a familiar 'ggplot2' style API with tidy data. This package is
particularly useful for visualizing metadata on a discrete axis, or summary
graphics on a continuous axis such as a boxplot or a density distribution.
Author: Justin Landis [aut, cre]
Maintainer: Justin Landis <jtlandis314@gmail.com>
Diff between ggside versions 0.1.1 dated 2021-07-20 and 0.1.2 dated 2021-07-21
DESCRIPTION | 7 MD5 | 38 - NEWS.md | 5 R/geom-sidetext.r | 2 R/plot-construction.R | 20 R/sideLayer.R | 18 README.md | 10 inst/doc/ggside_aes_mapping.html | 281 +--------- inst/doc/ggside_basic_usage.html | 701 +++++--------------------- tests/testthat/test_FacetGrid_ggside_themes.R | 3 tests/testthat/test_FacetNull_ggside_themes.R | 3 tests/testthat/test_FacetWrap_ggside_themes.R | 3 tests/testthat/test_add_gg.R | 25 tests/testthat/test_continuous_date_axis.R | 13 tests/testthat/test_ggside_axis_polts.R | 2 tests/testthat/test_ggside_classes.R | 60 +- tests/testthat/test_ggside_scales.R | 4 tests/testthat/test_non_aes_mapping_legend.R | 7 tests/testthat/test_vdiff_diamondplots.R | 12 tests/testthat/test_vdiff_irisScatter.R | 14 20 files changed, 324 insertions(+), 904 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-06 0.2.0
2021-06-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-04 1.0.2
2021-04-02 1.0.1
2021-03-30 1.0.0
2020-09-09 0.2.0
2020-02-13 0.1.1
2020-01-31 0.1.0
Title: Toolkit for Compiling, (Post-Hoc) Testing, and Plotting
Regression Results
Description: Compiling regression results into a publishable format, conducting post-hoc hypothesis testing, and plotting moderating effects (the effect of X on Y becomes stronger/weaker as Z increases).
Author: Rui K. Yang [aut, cre],
Luyao Peng [aut]
Maintainer: Rui K. Yang <rkzyang@gmail.com>
Diff between regrrr versions 0.1.1 dated 2020-02-02 and 0.1.2 dated 2021-07-21
DESCRIPTION | 9 ++---- MD5 | 12 ++++---- NEWS.md | 7 +---- R/plotting.R | 73 +++++++++++++++++++++++++++++++++++++++-------------- README.md | 12 +++++++- man/plot_effect.Rd | 15 ++++++++++ man/regrrr.Rd | 2 - 7 files changed, 92 insertions(+), 38 deletions(-)
Title: Analysis of Factorial Experiments
Description: Convenience functions for analyzing factorial experiments using ANOVA or
mixed models. aov_ez(), aov_car(), and aov_4() allow specification of
between, within (i.e., repeated-measures), or mixed (i.e., split-plot)
ANOVAs for data in long format (i.e., one observation per row),
automatically aggregating multiple observations per individual and cell
of the design. mixed() fits mixed models using lme4::lmer() and computes
p-values for all fixed effects using either Kenward-Roger or Satterthwaite
approximation for degrees of freedom (LMM only), parametric bootstrap
(LMMs and GLMMs), or likelihood ratio tests (LMMs and GLMMs).
afex_plot() provides a high-level interface for interaction or one-way
plots using ggplot2, combining raw data and model estimates. afex uses
type 3 sums of squares as default (imitating commercial statistical software).
Author: Henrik Singmann [aut, cre] (<https://orcid.org/0000-0002-4842-3657>),
Ben Bolker [aut],
Jake Westfall [aut],
Frederik Aust [aut] (<https://orcid.org/0000-0003-4900-788X>),
Mattan S. Ben-Shachar [aut],
Søren Højsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb],
Jonathon Love [ctb],
Russell Lenth [ctb],
Rune Haubo Bojesen Christensen [ctb]
Maintainer: Henrik Singmann <singmann@gmail.com>
Diff between afex versions 0.28-1 dated 2021-01-12 and 1.0-0 dated 2021-07-21
afex-0.28-1/afex/R/test_assumption.R |only afex-0.28-1/afex/man/test_assumptions.Rd |only afex-0.28-1/afex/tests/testthat/test-assumption_tests.R |only afex-1.0-0/afex/DESCRIPTION | 9 afex-1.0-0/afex/MD5 | 213 afex-1.0-0/afex/NAMESPACE | 174 afex-1.0-0/afex/NEWS | 1927 ++++---- afex-1.0-0/afex/R/afex-package.R | 20 afex-1.0-0/afex/R/afex_plot.R | 1644 +++---- afex-1.0-0/afex/R/afex_plot_plotting_functions.R | 520 +- afex-1.0-0/afex/R/afex_plot_utils.R | 628 +- afex-1.0-0/afex/R/allFit.R | 258 - afex-1.0-0/afex/R/aov_car.R | 1622 +++--- afex-1.0-0/afex/R/compare.2.vectors.R | 298 - afex-1.0-0/afex/R/deprecated.R | 88 afex-1.0-0/afex/R/ems.R | 214 afex-1.0-0/afex/R/fhch2010-data.R | 70 afex-1.0-0/afex/R/helpers.R | 194 afex-1.0-0/afex/R/ks2013.3-data.R | 56 afex-1.0-0/afex/R/laptop_urry-data.R |only afex-1.0-0/afex/R/lmerTest_utils.R | 140 afex-1.0-0/afex/R/md_12.1-data.R | 90 afex-1.0-0/afex/R/md_15.1-data.R | 122 afex-1.0-0/afex/R/md_16.1-data.R | 68 afex-1.0-0/afex/R/md_16.4-data.R | 68 afex-1.0-0/afex/R/methods.afex_aov.R | 571 +- afex-1.0-0/afex/R/mixed.R | 2319 ++++------ afex-1.0-0/afex/R/nice.R | 698 +-- afex-1.0-0/afex/R/obk.long-data.R | 92 afex-1.0-0/afex/R/predict.R |only afex-1.0-0/afex/R/reexport.R | 14 afex-1.0-0/afex/R/residuals.R | 176 afex-1.0-0/afex/R/round_ps.R | 100 afex-1.0-0/afex/R/set_contrasts.R | 88 afex-1.0-0/afex/R/sk2011.1-data.R | 90 afex-1.0-0/afex/R/sk2011.2-data.R | 64 afex-1.0-0/afex/R/stroop-data.R | 102 afex-1.0-0/afex/R/utils.R | 270 - afex-1.0-0/afex/R/zzz.R | 84 afex-1.0-0/afex/README.md | 1150 ++-- afex-1.0-0/afex/build/partial.rdb |binary afex-1.0-0/afex/build/vignette.rds |binary afex-1.0-0/afex/data/laptop_urry.rda |only afex-1.0-0/afex/inst/doc/afex_analysing_accuracy_data.R | 954 ++-- afex-1.0-0/afex/inst/doc/afex_analysing_accuracy_data.Rmd | 1519 +++--- afex-1.0-0/afex/inst/doc/afex_analysing_accuracy_data.html | 1746 +++---- afex-1.0-0/afex/inst/doc/afex_anova_example.R | 254 - afex-1.0-0/afex/inst/doc/afex_anova_example.Rmd | 578 +- afex-1.0-0/afex/inst/doc/afex_anova_example.html | 2112 ++++----- afex-1.0-0/afex/inst/doc/afex_mixed_example.R | 524 +- afex-1.0-0/afex/inst/doc/afex_mixed_example.Rmd | 910 +-- afex-1.0-0/afex/inst/doc/afex_mixed_example.html | 1573 ++---- afex-1.0-0/afex/inst/doc/afex_plot_introduction.R | 536 +- afex-1.0-0/afex/inst/doc/afex_plot_introduction.Rmd | 884 +-- afex-1.0-0/afex/inst/doc/afex_plot_introduction.html | 1374 ++--- afex-1.0-0/afex/inst/doc/afex_plot_supported_models.R | 544 +- afex-1.0-0/afex/inst/doc/afex_plot_supported_models.Rmd | 800 +-- afex-1.0-0/afex/inst/doc/afex_plot_supported_models.html | 1086 +--- afex-1.0-0/afex/inst/doc/assumptions_of_ANOVAs.R |only afex-1.0-0/afex/inst/doc/assumptions_of_ANOVAs.Rmd |only afex-1.0-0/afex/inst/doc/assumptions_of_ANOVAs.html |only afex-1.0-0/afex/inst/doc/introduction-mixed-models.pdf.asis | 12 afex-1.0-0/afex/man/afex-package.Rd | 96 afex-1.0-0/afex/man/afex_aov-methods.Rd | 269 - afex-1.0-0/afex/man/afex_options.Rd | 168 afex-1.0-0/afex/man/afex_plot.Rd | 1772 +++---- afex-1.0-0/afex/man/all_fit.Rd | 216 afex-1.0-0/afex/man/aov_car.Rd | 1194 ++--- afex-1.0-0/afex/man/compare.2.vectors.Rd | 168 afex-1.0-0/afex/man/deprecated.Rd | 60 afex-1.0-0/afex/man/ems.Rd | 98 afex-1.0-0/afex/man/fhch2010.Rd | 130 afex-1.0-0/afex/man/ks2013.3.Rd | 82 afex-1.0-0/afex/man/laptop_urry.Rd |only afex-1.0-0/afex/man/md_12.1.Rd | 104 afex-1.0-0/afex/man/md_15.1.Rd | 142 afex-1.0-0/afex/man/md_16.1.Rd | 82 afex-1.0-0/afex/man/md_16.4.Rd | 82 afex-1.0-0/afex/man/mixed.Rd | 1551 +++--- afex-1.0-0/afex/man/nice.Rd | 412 - afex-1.0-0/afex/man/obk.long.Rd | 106 afex-1.0-0/afex/man/predict.afex_aov.Rd |only afex-1.0-0/afex/man/reexports.Rd | 32 afex-1.0-0/afex/man/residuals.afex_aov.Rd | 194 afex-1.0-0/afex/man/round_ps.Rd | 100 afex-1.0-0/afex/man/set_sum_contrasts.Rd | 58 afex-1.0-0/afex/man/sk2011.1.Rd | 96 afex-1.0-0/afex/man/sk2011.2.Rd | 148 afex-1.0-0/afex/man/stroop.Rd | 104 afex-1.0-0/afex/tests/testthat.R | 8 afex-1.0-0/afex/tests/testthat/test-afex_aov.R | 297 - afex-1.0-0/afex/tests/testthat/test-afex_plot-basics.R | 594 +- afex-1.0-0/afex/tests/testthat/test-afex_plot-bugs.R | 172 afex-1.0-0/afex/tests/testthat/test-afex_plot-default-support.R | 138 afex-1.0-0/afex/tests/testthat/test-afex_plot-vignette.R | 256 - afex-1.0-0/afex/tests/testthat/test-aov_car-basic.R | 290 - afex-1.0-0/afex/tests/testthat/test-aov_car-bugs.R | 553 +- afex-1.0-0/afex/tests/testthat/test-aov_car-structural.R | 290 - afex-1.0-0/afex/tests/testthat/test-compare_2_vectors.R | 18 afex-1.0-0/afex/tests/testthat/test-emmeans-interface.R | 443 - afex-1.0-0/afex/tests/testthat/test-lmerTest-support.R | 62 afex-1.0-0/afex/tests/testthat/test-mixed-bugs.R | 328 - afex-1.0-0/afex/tests/testthat/test-mixed-effects.R | 58 afex-1.0-0/afex/tests/testthat/test-mixed-mw.R | 96 afex-1.0-0/afex/tests/testthat/test-mixed-structure.R | 848 +-- afex-1.0-0/afex/tests/testthat/test-predict.R |only afex-1.0-0/afex/tests/testthat/test-residuals.R | 120 afex-1.0-0/afex/vignettes/afex_analysing_accuracy_data.Rmd | 1519 +++--- afex-1.0-0/afex/vignettes/afex_anova_example.Rmd | 578 +- afex-1.0-0/afex/vignettes/afex_mixed_example.Rmd | 910 +-- afex-1.0-0/afex/vignettes/afex_plot_introduction.Rmd | 884 +-- afex-1.0-0/afex/vignettes/afex_plot_supported_models.Rmd | 800 +-- afex-1.0-0/afex/vignettes/assumptions_of_ANOVAs.Rmd |only afex-1.0-0/afex/vignettes/introduction-mixed-models.pdf.asis | 12 114 files changed, 22773 insertions(+), 23612 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>, @mattansb),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Brenton M. Wiernik [aut, ctb] (<https://orcid.org/0000-0001-9560-6336>,
@bmwiernik),
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Martin Jullum [rev],
gjo11 [rev]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between performance versions 0.7.2 dated 2021-05-17 and 0.7.3 dated 2021-07-21
DESCRIPTION | 32 +- MD5 | 138 ++++----- NAMESPACE | 7 NEWS.md | 18 + R/check_collinearity.R | 114 +++++--- R/check_convergence.R | 5 R/check_distribution.R | 48 +-- R/check_heteroscedasticity.R | 10 R/check_homogeneity.R | 6 R/check_itemscale.R | 53 ++- R/check_model.R | 76 ++++- R/check_model_diagnostics.R | 4 R/check_normality.R | 7 R/check_outliers.R | 441 ++++++++++++++++++++++--------- R/check_overdispersion.R | 5 R/check_singularity.R | 76 ++--- R/check_sphericity.R | 13 R/compare_performance.R | 64 +++- R/get_gradients.R | 5 R/helpers.R | 5 R/icc.R | 19 + R/item_reliability.R | 24 - R/item_split_half.R | 17 - R/looic.R | 21 + R/model_performance.lavaan.R | 99 +++++- R/model_performance.mixed.R | 34 +- R/model_performance.rma.R | 52 ++- R/performance_accuracy.R | 19 + R/performance_aicc.R | 42 -- R/performance_hosmer.R | 14 R/performance_pcp.R | 38 ++ R/performance_roc.R | 19 + R/performance_score.R | 21 + R/plot-methods.R | 37 -- R/pp_check.R | 5 R/print-methods.R | 17 - R/print_md.R | 39 ++ R/r2.R | 4 R/r2_bayes.R | 4 R/r2_loo.R | 9 R/r2_nakagawa.R | 58 +++- R/r2_somers.R | 11 R/test_likelihoodratio.R | 4 R/test_performance.R | 38 +- R/test_vuong.R | 9 R/test_wald.R | 2 build/partial.rdb |binary man/check_collinearity.Rd | 66 ++-- man/check_distribution.Rd | 108 +++---- man/check_heteroscedasticity.Rd | 10 man/check_homogeneity.Rd | 2 man/check_itemscale.Rd | 42 ++ man/check_model.Rd | 32 +- man/check_normality.Rd | 2 man/check_outliers.Rd | 234 ++++++++++++---- man/check_singularity.Rd | 176 ++++++------ man/check_sphericity.Rd | 14 man/classify_distribution.Rd | 7 man/compare_performance.Rd | 31 +- man/item_reliability.Rd | 86 +++--- man/item_split_half.Rd | 80 +++-- man/model_performance.lavaan.Rd | 94 +++++- man/model_performance.merMod.Rd | 78 ++--- man/model_performance.rma.Rd | 45 ++- man/performance_hosmer.Rd | 67 ++-- man/performance_pcp.Rd | 127 ++++---- man/r2_nakagawa.Rd | 33 +- man/r2_somers.Rd | 6 man/test_performance.Rd | 26 - tests/testthat/test-check_collinearity.R | 71 +++- 70 files changed, 2046 insertions(+), 1174 deletions(-)
Title: Pacote Para Analise Multivariada
Description: Package with multivariate analysis methodologies for experiment evaluation.
The package estimates dissimilarity measures, builds dendrograms, obtains MANOVA,
principal components, canonical variables, etc. (Pacote com metodologias de analise
multivariada para avaliação de experimentos. O pacote estima medidas de dissimilaridade,
construi de dendogramas, obtem a MANOVA, componentes principais, variáveis canônicas, etc.)
Author: Alcinei Mistico Azevedo [aut, cre]
(<https://orcid.org/0000-0001-5196-0851>)
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between MultivariateAnalysis versions 0.1.1 dated 2021-07-06 and 0.2.0 dated 2021-07-21
DESCRIPTION | 8 ++-- MD5 | 29 +++++++++------- NAMESPACE | 3 + NEWS.md | 7 +++ R/ApplyDissimilaridade.R | 2 + R/CompontesPrincipais.R | 63 ++++++++++++++++++++--------------- R/CorrelacaoMantel.R |only R/Dados.FMI.Quanti.R |only R/SummaryDistancia.R | 76 +++++++++++++++++++++++++++++++++++++++---- R/VariaveisCanonicas.R | 13 +++++-- R/VariaveisCanonicas2.R | 6 +-- R/zzz.R | 15 ++++++++ data/Dados.FMI.Quanti.txt |only man/ComponentesPrincipais.Rd | 47 ++++++++++++++++---------- man/CorrelacaoMantel.Rd |only man/Dados.FMI.Quanti.Rd |only man/SummaryDistancia.Rd | 59 ++++++++++++++++++++++++++++++--- man/VariaveisCanonicas.Rd | 10 ++++- 18 files changed, 258 insertions(+), 80 deletions(-)
More information about MultivariateAnalysis at CRAN
Permanent link
Title: General Utility Functions for Analysis of Clinical Data
Description: Utility functions to facilitate the import,
the reporting and analysis of clinical data.
Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains
from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate
the package functionalities.
Author: Laure Cougnaud [aut, cre],
Michela Pasetto [aut],
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between clinUtils versions 0.0.3 dated 2021-07-16 and 0.0.4 dated 2021-07-21
DESCRIPTION | 18 +++++----- MD5 | 6 +-- inst/NEWS | 4 ++ inst/doc/clinUtils-vignette.html | 68 +++++++++++++++++++-------------------- 4 files changed, 50 insertions(+), 46 deletions(-)