Title: Inference for Spatiotemporal Partially Observed Markov Processes
Description: Inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models. To do so, it relies on and extends a number of facilities that the 'pomp' package provides for inference on time series data using partially-observed Markov process (POMP) models. Implemented methods include filtering and inference methods in Park and Ionides (2020) <doi:10.1007/s11222-020-09957-3>, Rebeschini and van Handel (2015) <doi:10.1214/14-AAP1061>, Evensen and van Leeuwen (1996) <doi:10.1029/94JC00572> and Ionides et al. (2021) <arXiv:2002.05211v2>. Pre-print statistical software article: Asfaw et al. (2021) <arXiv:2101.01157>.
Author: Kidus Asfaw [aut, cre],
Aaron A. King [aut],
Edward Ionides [aut],
Joonha Park [ctb],
Allister Ho [ctb]
Maintainer: Kidus Asfaw <kasfaw@umich.edu>
Diff between spatPomp versions 0.23.0.0 dated 2021-07-09 and 0.25.0.0 dated 2021-07-27
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/plot.R | 51 +++++++++++++++++++++++++++++++++++---------------- man/plot.Rd | 10 +++++++++- man/reexports.Rd | 2 +- 5 files changed, 54 insertions(+), 27 deletions(-)
Title: Create Representative Records After Entity Resolution
Description: An implementation of Kaplan, Betancourt, Steorts (2020) <arXiv:1810.01538> that creates representative records for use in downstream tasks after entity resolution is performed. Multiple methods for creating the representative records (data sets) are provided.
Author: Andee Kaplan [aut, cre],
Brenda Betancourt [aut],
Rebecca C. Steorts [aut]
Maintainer: Andee Kaplan <andee.kaplan@colostate.edu>
Diff between representr versions 0.1.1 dated 2020-10-20 and 0.1.2 dated 2021-07-27
DESCRIPTION | 8 MD5 | 22 +- NEWS.md | 6 R/pp_weights.R | 3 R/rl_reg.R | 2 build/vignette.rds |binary inst/doc/representr.R | 42 ---- inst/doc/representr.Rmd | 87 ++++----- inst/doc/representr.html | 450 +++++++++++++++-------------------------------- man/pp_weights.Rd | 3 man/rl_reg1.Rd | 2 vignettes/representr.Rmd | 87 ++++----- 12 files changed, 266 insertions(+), 446 deletions(-)
Title: Estimate Kinship and FST under Arbitrary Population Structure
Description: Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
Author: Alejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>),
John D. Storey [aut] (<https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Diff between popkin versions 1.3.8 dated 2021-02-11 and 1.3.13 dated 2021-07-27
DESCRIPTION | 9 MD5 | 89 + NAMESPACE | 2 NEWS.md | 116 +- R/fst.R | 2 R/inbr.R | 3 R/inbr_diag.R | 8 R/n_eff.R | 2 R/phylo_max_edge.R |only R/plot_admix.R |only R/plot_phylo.R |only R/plot_popkin.R | 284 ++++-- R/popkin-package.R | 18 R/popkin.R | 13 R/popkin_A.R | 6 R/popkin_A_min_subpops.R | 3 R/popkin_af.R |only R/pwfst.R | 2 R/rescale_popkin.R | 2 R/validate_kinship.R | 30 R/weights_subpops.R | 83 + README.md | 5 build/vignette.rds |binary inst/CITATION | 18 inst/doc/popkin.R | 33 inst/doc/popkin.Rmd | 45 inst/doc/popkin.html | 70 + man/fst.Rd | 2 man/inbr.Rd | 3 man/inbr_diag.Rd | 8 man/n_eff.Rd | 2 man/plot_phylo.Rd |only man/plot_popkin.Rd | 115 +- man/popkin-package.Rd | 18 man/popkin.Rd | 13 man/popkin_A.Rd | 4 man/popkin_A_min_subpops.Rd | 3 man/popkin_af.Rd |only man/pwfst.Rd | 2 man/rescale_popkin.Rd | 2 man/validate_kinship.Rd | 16 man/weights_subpops.Rd | 24 tests/testthat/Xs.RData |binary tests/testthat/Xs.bim | 2000 +++++++++++++++++++++---------------------- tests/testthat/Xs.grm.N.bin |only tests/testthat/Xs.grm.bin |only tests/testthat/Xs.grm.id |only tests/testthat/make_data.R | 3 tests/testthat/test_popkin.R | 371 +++++++ vignettes/popkin.Rmd | 45 50 files changed, 2153 insertions(+), 1321 deletions(-)
Title: Algorithms for Quantitative Pedology
Description: The Algorithms for Quantitative Pedology (AQP) project was started in 2009 to organize a loosely-related set of concepts and source code on the topic of soil profile visualization, aggregation, and classification into this package (aqp). Over the past 8 years, the project has grown into a suite of related R packages that enhance and simplify the quantitative analysis of soil profile data. Central to the AQP project is a new vocabulary of specialized functions and data structures that can accommodate the inherent complexity of soil profile information; freeing the scientist to focus on ideas rather than boilerplate data processing tasks <doi:10.1016/j.cageo.2012.10.020>. These functions and data structures have been extensively tested and documented, applied to projects involving hundreds of thousands of soil profiles, and deeply integrated into widely used tools such as SoilWeb <https://casoilresource.lawr.ucdavis.edu/soilweb-apps/>. Components of the AQP project (aqp, soilDB, sharpshootR, soilReports packages) serve an important role in routine data analysis within the USDA-NRCS Soil Science Division. The AQP suite of R packages offer a convenient platform for bridging the gap between pedometric theory and practice.
Author: Dylan Beaudette [aut, cre],
Pierre Roudier [aut, ctb],
Andrew Brown [aut, ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between aqp versions 1.29 dated 2021-04-07 and 1.30 dated 2021-07-27
aqp-1.29/aqp/man/hzID-set.Rd |only aqp-1.30/aqp/.Rinstignore | 6 aqp-1.30/aqp/DESCRIPTION | 8 aqp-1.30/aqp/MD5 | 285 ++++----- aqp-1.30/aqp/NAMESPACE | 4 aqp-1.30/aqp/NEWS.md | 22 aqp-1.30/aqp/R/Class-SoilProfileCollection.R | 278 +++------ aqp-1.30/aqp/R/PMS2Munsell.R |only aqp-1.30/aqp/R/SoilProfileCollection-coercion.R | 276 ++++----- aqp-1.30/aqp/R/SoilProfileCollection-integrity.R | 6 aqp-1.30/aqp/R/SoilProfileCollection-iterators.R | 2 aqp-1.30/aqp/R/SoilProfileCollection-methods.R | 255 +++++--- aqp-1.30/aqp/R/SoilProfileCollection-operators.R | 2 aqp-1.30/aqp/R/SoilProfileCollection-setters.R | 69 +- aqp-1.30/aqp/R/SoilProfileCollection-slice-methods.R | 2 aqp-1.30/aqp/R/accuracy_uncertainty.R | 4 aqp-1.30/aqp/R/aggregateColor.R | 58 - aqp-1.30/aqp/R/aggregateSoilDepth.R | 2 aqp-1.30/aqp/R/alignTransect.R | 2 aqp-1.30/aqp/R/bootstrapSoilTexture.R | 5 aqp-1.30/aqp/R/combine.R | 2 aqp-1.30/aqp/R/compositeSPC.R | 56 - aqp-1.30/aqp/R/data-documentation.R | 159 ++++- aqp-1.30/aqp/R/depthOf.R | 231 +++++-- aqp-1.30/aqp/R/depthWeights.R | 42 - aqp-1.30/aqp/R/dice.R | 2 aqp-1.30/aqp/R/estimateAWC.R | 32 - aqp-1.30/aqp/R/factor-level-setters.R | 150 ++--- aqp-1.30/aqp/R/findOverlap-fixOverlap.R | 2 aqp-1.30/aqp/R/genSlabLabels.R | 108 +-- aqp-1.30/aqp/R/getSurfaceHorizonDepth.R | 278 ++++++--- aqp-1.30/aqp/R/glom.R | 300 +++++++--- aqp-1.30/aqp/R/harmonize.R | 2 aqp-1.30/aqp/R/invertLabelColor.R | 58 - aqp-1.30/aqp/R/missingDataGrid.R | 2 aqp-1.30/aqp/R/mixMunsell.R | 238 +++++-- aqp-1.30/aqp/R/mollicEpipedon.R | 8 aqp-1.30/aqp/R/munsell2rgb.R | 172 ++++- aqp-1.30/aqp/R/mutate_profile.R | 2 aqp-1.30/aqp/R/perturb.R | 13 aqp-1.30/aqp/R/plotColorMixture.R | 118 +++ aqp-1.30/aqp/R/prepanel.depth_function.R | 170 ++--- aqp-1.30/aqp/R/previewColors.R | 47 + aqp-1.30/aqp/R/profile_compare.R | 2 aqp-1.30/aqp/R/slab.R | 2 aqp-1.30/aqp/R/soilColorIndices.R | 12 aqp-1.30/aqp/R/soilPalette.R | 150 ++--- aqp-1.30/aqp/R/spc2mpspline.R | 4 aqp-1.30/aqp/R/spec2Munsell.R |only aqp-1.30/aqp/R/transform.R | 2 aqp-1.30/aqp/R/zzz.R | 14 aqp-1.30/aqp/build/partial.rdb |binary aqp-1.30/aqp/data/datalist | 2 aqp-1.30/aqp/data/sp5.rda |binary aqp-1.30/aqp/data/spectral.reference.rda |only aqp-1.30/aqp/data/traditionalColorNames.rda |only aqp-1.30/aqp/demo/slope_effect_hz_thickness.R | 222 +++---- aqp-1.30/aqp/inst/WORDLIST |only aqp-1.30/aqp/inst/_pkgdown.yml | 16 aqp-1.30/aqp/inst/example-data/jacobs2000-hz-data.csv | 94 +-- aqp-1.30/aqp/inst/example-data/jacobs2000-site-data.csv | 16 aqp-1.30/aqp/man/PMS2Munsell.Rd |only aqp-1.30/aqp/man/aggregateColor.Rd | 5 aqp-1.30/aqp/man/aggregateSoilDepth.Rd | 2 aqp-1.30/aqp/man/alignTransect.Rd | 3 aqp-1.30/aqp/man/aqp_df_class.Rd | 6 aqp-1.30/aqp/man/bootstrapSoilTexture.Rd | 4 aqp-1.30/aqp/man/brierScore.Rd | 4 aqp-1.30/aqp/man/coercion-methods.Rd | 98 +-- aqp-1.30/aqp/man/compositeSPC.Rd | 42 - aqp-1.30/aqp/man/coordinates.Rd | 72 +- aqp-1.30/aqp/man/depthOf.Rd | 29 aqp-1.30/aqp/man/depthWeights.Rd | 54 - aqp-1.30/aqp/man/depth_units.Rd | 67 +- aqp-1.30/aqp/man/depths.Rd | 78 +- aqp-1.30/aqp/man/diagnostic_hz-set.Rd | 3 aqp-1.30/aqp/man/diagnostic_hz.Rd | 29 aqp-1.30/aqp/man/dice.Rd | 2 aqp-1.30/aqp/man/dollarsign-set.Rd | 44 - aqp-1.30/aqp/man/dollarsign.Rd | 56 - aqp-1.30/aqp/man/doublebracket-set.Rd | 58 - aqp-1.30/aqp/man/equivalent_munsell.Rd | 8 aqp-1.30/aqp/man/getSurfaceHorizonDepth.Rd | 147 ++-- aqp-1.30/aqp/man/glom-SoilProfileCollection-method.Rd | 81 ++ aqp-1.30/aqp/man/grepSPC.Rd | 51 - aqp-1.30/aqp/man/harden.rubification.Rd | 12 aqp-1.30/aqp/man/horizonDepths.Rd | 43 - aqp-1.30/aqp/man/horizonNames.Rd | 43 - aqp-1.30/aqp/man/horizons.Rd | 9 aqp-1.30/aqp/man/hzDesgn.Rd | 29 aqp-1.30/aqp/man/hzID.Rd | 37 - aqp-1.30/aqp/man/hzdesgnname-set.Rd | 59 + aqp-1.30/aqp/man/hzdesgnname.Rd | 29 aqp-1.30/aqp/man/hzidname.Rd | 75 +- aqp-1.30/aqp/man/hztexclname-set.Rd | 59 + aqp-1.30/aqp/man/hztexclname.Rd | 29 aqp-1.30/aqp/man/idname.Rd | 29 aqp-1.30/aqp/man/invertLabelColor.Rd | 44 - aqp-1.30/aqp/man/length.Rd | 32 - aqp-1.30/aqp/man/max.Rd | 38 - aqp-1.30/aqp/man/metadata.Rd | 9 aqp-1.30/aqp/man/min.Rd | 38 - aqp-1.30/aqp/man/missingDataGrid.Rd | 2 aqp-1.30/aqp/man/mixMunsell.Rd | 44 + aqp-1.30/aqp/man/munsell.Rd | 2 aqp-1.30/aqp/man/mutate_profile.Rd | 43 - aqp-1.30/aqp/man/names.Rd | 32 - aqp-1.30/aqp/man/nrow.Rd | 29 aqp-1.30/aqp/man/parseMunsell.Rd | 13 aqp-1.30/aqp/man/plotColorMixture.Rd | 45 + aqp-1.30/aqp/man/pms.munsell.lut.Rd | 48 - aqp-1.30/aqp/man/previewColors.Rd | 8 aqp-1.30/aqp/man/profile_id.Rd | 43 - aqp-1.30/aqp/man/proj4string-SoilProfileCollection-method.Rd | 28 aqp-1.30/aqp/man/proj4string-set-SoilProfileCollection-ANY-method.Rd | 32 - aqp-1.30/aqp/man/replaceHorizons.Rd | 75 +- aqp-1.30/aqp/man/restrictions-set.Rd | 3 aqp-1.30/aqp/man/restrictions.Rd | 29 aqp-1.30/aqp/man/show.Rd | 60 +- aqp-1.30/aqp/man/site.Rd | 4 aqp-1.30/aqp/man/siteNames.Rd | 43 - aqp-1.30/aqp/man/soilPalette.Rd | 2 aqp-1.30/aqp/man/spc2mpspline-SoilProfileCollection-method.Rd | 2 aqp-1.30/aqp/man/spc_in_sync.Rd | 1 aqp-1.30/aqp/man/spec2Munsell.Rd |only aqp-1.30/aqp/man/spectral.reference.Rd |only aqp-1.30/aqp/man/subApply.Rd | 3 aqp-1.30/aqp/man/subsetHz-SoilProfileCollection-method.Rd |only aqp-1.30/aqp/man/subsetProfiles.Rd | 2 aqp-1.30/aqp/man/traditionalColorNames.Rd |only aqp-1.30/aqp/man/unique.Rd | 89 ++ aqp-1.30/aqp/man/validSpatialData.Rd | 29 aqp-1.30/aqp/tests/testthat.R | 8 aqp-1.30/aqp/tests/testthat/Rplots.pdf |only aqp-1.30/aqp/tests/testthat/test-PMS2Munsell.R |only aqp-1.30/aqp/tests/testthat/test-aggregateColor.R | 14 aqp-1.30/aqp/tests/testthat/test-awc.R | 11 aqp-1.30/aqp/tests/testthat/test-color-conversion.R | 50 + aqp-1.30/aqp/tests/testthat/test-colorIndices.R | 72 +- aqp-1.30/aqp/tests/testthat/test-evalMissingData.R | 152 ++--- aqp-1.30/aqp/tests/testthat/test-genhz.R | 2 aqp-1.30/aqp/tests/testthat/test-glom.R | 35 - aqp-1.30/aqp/tests/testthat/test-mixMunsell.R | 35 - aqp-1.30/aqp/tests/testthat/test-mollic.R | 48 + aqp-1.30/aqp/tests/testthat/test-overlap.R | 92 +-- aqp-1.30/aqp/tests/testthat/test-slab.R | 234 +++---- aqp-1.30/aqp/tests/testthat/test-slabPlot.R | 2 aqp-1.30/aqp/tests/testthat/test-slice.R | 90 +-- aqp-1.30/aqp/tests/testthat/test-soil-depth.R | 6 aqp-1.30/aqp/tests/testthat/test-spec2Munsell.R |only aqp-1.30/aqp/tests/testthat/test-subsetHz.R |only aqp-1.30/aqp/tests/testthat/test-surface-thickness.R | 96 +-- 152 files changed, 4203 insertions(+), 3026 deletions(-)
Title: Pixar Films and Achievements
Description: Data about Disney Pixar films provided by Wikipedia. This
package contains data about the films, the people involved, and their
awards.
Author: Eric Leung [aut, cre] (<https://orcid.org/0000-0002-8724-1872>)
Maintainer: Eric Leung <erictleung@outlook.com>
Diff between pixarfilms versions 0.2.0 dated 2021-05-03 and 0.2.1 dated 2021-07-27
pixarfilms-0.2.0/pixarfilms/tests/testthat/test-data_academy.txt |only pixarfilms-0.2.0/pixarfilms/tests/testthat/test-data_box_office_budget.txt |only pixarfilms-0.2.0/pixarfilms/tests/testthat/test-data_box_office_numbers.txt |only pixarfilms-0.2.0/pixarfilms/tests/testthat/test-data_box_office_worldwide.txt |only pixarfilms-0.2.0/pixarfilms/tests/testthat/test-data_genres.txt |only pixarfilms-0.2.0/pixarfilms/tests/testthat/test-data_pixar_films.txt |only pixarfilms-0.2.0/pixarfilms/tests/testthat/test-data_pixar_people.txt |only pixarfilms-0.2.0/pixarfilms/tests/testthat/test-data_public_response.txt |only pixarfilms-0.2.1/pixarfilms/DESCRIPTION | 19 pixarfilms-0.2.1/pixarfilms/MD5 | 33 - pixarfilms-0.2.1/pixarfilms/NEWS.md | 6 pixarfilms-0.2.1/pixarfilms/R/data.R | 7 pixarfilms-0.2.1/pixarfilms/README.md | 61 ++- pixarfilms-0.2.1/pixarfilms/inst/WORDLIST | 4 pixarfilms-0.2.1/pixarfilms/inst/doc/pixar_film_ratings.R | 39 + pixarfilms-0.2.1/pixarfilms/inst/doc/pixar_film_ratings.Rmd | 74 ++- pixarfilms-0.2.1/pixarfilms/inst/doc/pixar_film_ratings.html | 203 +++++----- pixarfilms-0.2.1/pixarfilms/man/academy.Rd | 5 pixarfilms-0.2.1/pixarfilms/man/box_office.Rd | 2 pixarfilms-0.2.1/pixarfilms/tests/testthat/_snaps |only pixarfilms-0.2.1/pixarfilms/tests/testthat/test-data.R | 101 +--- pixarfilms-0.2.1/pixarfilms/vignettes/pixar_film_ratings.Rmd | 74 ++- 22 files changed, 369 insertions(+), 259 deletions(-)
Title: Estimating the Optimal Number of Migration Edges from 'Treemix'
Description: The popular population genetic software 'Treemix' by
'Pickrell and Pritchard' (2012) <DOI:10.1371/journal.pgen.1002967>
estimates the number of migration edges on a population tree.
However, it can be difficult to determine the number of migration
edges to include. Previously, it was customary to stop adding migration
edges when 99.8% of variation in the data was explained, but 'OptM'
automates this process using an ad hoc statistic based on the
second-order rate of change in the log likelihood. 'OptM' also
has added functionality for various threshold modeling
to compare with the ad hoc statistic.
Author: Robert Fitak [aut, cre]
Maintainer: Robert Fitak <rfitak9@gmail.com>
Diff between OptM versions 0.1.3 dated 2019-04-28 and 0.1.5 dated 2021-07-27
DESCRIPTION | 11 +++++------ MD5 | 12 ++++++------ R/optM.R | 41 ++++++++++++++++++++++++++++++++--------- R/plot_optM.R | 6 +++--- README.md | 16 +++++++++++----- inst/CITATION | 7 +++---- man/optM.Rd | 14 +++++++++++++- 7 files changed, 73 insertions(+), 34 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-19 0.1.0
Title: 3D Brain Visualization
Description: A fast, interactive cross-platform, and easy to share
'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or
'AFNI/SUMA' surfaces. The viewer widget can be either standalone or
embedded into 'R-shiny' applications. The standalone version only require
a web browser with 'WebGL2' support (for example, 'Chrome'). It can be
inserted into any websites; see <https://dipterix.org/project/threebrain/>).
as an example. The 'R-shiny' support allows the 3D viewer to be dynamically
generated from reactive user inputs. This feature has been fully adopted by
'RAVE' <https://openwetware.org/wiki/RAVE>, an interactive toolbox to
analyze 'iEEG/eCoG' data. Documentation about 'threeBrain' is provided
by <https://dipterix.org/threeBrain/> and several vignettes included
in this package. To cite the package, please check our 'NeuroImage' paper
by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>),
or see 'citation("threeBrain")' for details.
Author: Zhengjia Wang [aut, cre, cph],
John Magnotti [aut],
Brian Metzger [aut],
Elizabeth Nesbitt [res],
Meng Li [ths],
Michael Beauchamp [aut, dtc]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between threeBrain versions 0.1.9 dated 2021-01-10 and 0.2.0 dated 2021-07-27
threeBrain-0.1.9/threeBrain/inst/FreeSurferColorLUT.json |only threeBrain-0.2.0/threeBrain/DESCRIPTION | 53 threeBrain-0.2.0/threeBrain/MD5 | 83 threeBrain-0.2.0/threeBrain/NAMESPACE | 12 threeBrain-0.2.0/threeBrain/NEWS.md | 19 threeBrain-0.2.0/threeBrain/R/aaa.R | 6 threeBrain-0.2.0/threeBrain/R/cache_fs.R | 2 threeBrain-0.2.0/threeBrain/R/class_brain.R | 9 threeBrain-0.2.0/threeBrain/R/class_brainatlas.R | 120 threeBrain-0.2.0/threeBrain/R/class_multibrain.R | 15 threeBrain-0.2.0/threeBrain/R/fs_brain.R | 9 threeBrain-0.2.0/threeBrain/R/fs_brain2.R | 4 threeBrain-0.2.0/threeBrain/R/fs_import-atlas.R | 2 threeBrain-0.2.0/threeBrain/R/fs_import-t1.R | 2 threeBrain-0.2.0/threeBrain/R/geom_free.R | 19 threeBrain-0.2.0/threeBrain/R/loaders.R | 41 threeBrain-0.2.0/threeBrain/R/s3_geom.R | 16 threeBrain-0.2.0/threeBrain/R/suma_import-atlas.R | 2 threeBrain-0.2.0/threeBrain/R/suma_import-t1.R | 2 threeBrain-0.2.0/threeBrain/R/threejs_brain.R | 177 threeBrain-0.2.0/threeBrain/R/utils.R | 143 threeBrain-0.2.0/threeBrain/R/utils_orient.R | 8 threeBrain-0.2.0/threeBrain/R/utils_palette_voxel.R |only threeBrain-0.2.0/threeBrain/R/zzz.R | 52 threeBrain-0.2.0/threeBrain/inst/CITATION |only threeBrain-0.2.0/threeBrain/inst/WORDLIST | 61 threeBrain-0.2.0/threeBrain/inst/commands/launch.zip |binary threeBrain-0.2.0/threeBrain/inst/commands/linux.sh | 20 threeBrain-0.2.0/threeBrain/inst/commands/mac.command | 18 threeBrain-0.2.0/threeBrain/inst/doi.svg |only threeBrain-0.2.0/threeBrain/inst/htmlwidgets/lib/dipterixThreeBrain-1.0.1/dipterix.css | 36 threeBrain-0.2.0/threeBrain/inst/htmlwidgets/lib/dipterixThreeBrain-1.0.1/main.js |48105 +++++----- threeBrain-0.2.0/threeBrain/inst/htmlwidgets/threejs_brain.js | 156 threeBrain-0.2.0/threeBrain/inst/palettes |only threeBrain-0.2.0/threeBrain/inst/sample_data |only threeBrain-0.2.0/threeBrain/man/create_group.Rd | 12 threeBrain-0.2.0/threeBrain/man/default_template_directory.Rd |only threeBrain-0.2.0/threeBrain/man/freesurfer_brain.Rd | 5 threeBrain-0.2.0/threeBrain/man/geom_freemesh.Rd | 4 threeBrain-0.2.0/threeBrain/man/merge_brain.Rd | 3 threeBrain-0.2.0/threeBrain/man/reorient_volume.Rd | 4 threeBrain-0.2.0/threeBrain/man/template_subject.Rd | 11 threeBrain-0.2.0/threeBrain/man/threejs_brain.Rd | 59 threeBrain-0.2.0/threeBrain/man/voxel_colormap.Rd |only threeBrain-0.2.0/threeBrain/man/voxel_cube.Rd |only 45 files changed, 25713 insertions(+), 23577 deletions(-)
Title: Steve's Miscellaneous Functions
Description: These are miscellaneous functions that I find useful for my research and teaching.
The contents include themes for plots, functions for simulating
quantities of interest from regression models, functions for simulating various
forms of fake data for instructional/research purposes, and many more. All told, the functions
provided here are broadly useful for data organization, data presentation, data recoding,
and data simulation.
Author: Steve Miller [aut, cre],
Ben Bolker [ctb],
Dave Armstrong [ctb],
John Fox [ctb],
Winston Chang [ctb],
Brian Ripley [ctb],
Bill Venables [ctb],
Pascal van Kooten [ctb],
Gerko Vink [ctb],
Paul Williamson [ctb]
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between stevemisc versions 1.1.0 dated 2021-06-14 and 1.2.0 dated 2021-07-27
DESCRIPTION | 11 - MD5 | 42 +++-- NAMESPACE | 8 NEWS.md | 9 + R/data.R | 26 +++ R/ggplot-themes.R | 169 ++++++++++++++++++++ R/prepare_refs.R |only R/print_refs.R |only R/r2sd.R | 26 ++- R/revcode.R |only README.md | 242 +++++++++++++++++++++++++----- data/stevepubs.rda |only man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-15-2.png |binary man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-16-2.png |only man/figures/README-unnamed-chunk-17-1.png |only man/figures/README-unnamed-chunk-17-2.png |only man/figures/README-unnamed-chunk-17-3.png |only man/figures/README-unnamed-chunk-17-4.png |only man/figures/README-unnamed-chunk-18-1.png |only man/figures/README-unnamed-chunk-18-2.png |only man/figures/README-unnamed-chunk-18-3.png |only man/figures/README-unnamed-chunk-18-4.png |only man/figures/README-unnamed-chunk-19-1.png |only man/ggplot-themes.Rd | 32 +++ man/prepare_refs.Rd |only man/print_refs.Rd |only man/r2sd.Rd | 15 + man/revcode.Rd |only man/stevepubs.Rd |only 31 files changed, 517 insertions(+), 63 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-apis/>.
Author: Alexey Seleznev [aut, cre] (<https://orcid.org/0000-0003-0410-7385>)
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.3.0 dated 2021-04-16 and 2.4.0 dated 2021-07-27
DESCRIPTION | 8 MD5 | 24 - NAMESPACE | 4 NEWS.md | 44 +++ R/fbGetAdAccountCustomAudiences.R |only R/fbGetAdCreative.R | 5 R/zzz.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/rfacebookstat-authorization.html | 229 +--------------- inst/doc/rfacebookstat-cost-data.html | 245 +---------------- inst/doc/rfacebookstat-get-statistics.html | 407 +++++++---------------------- man/fbGetAdAccountCustomAudiences.Rd |only man/fbGetAdCreative.Rd | 4 14 files changed, 226 insertions(+), 746 deletions(-)
Title: Methods for Working with Uncertainty in Rankings
Description: Provides methods for measuring and describing uncertainty in
rankings. See Rising (2021) <arXiv:2107.03459> for background.
Author: Justin Rising [aut, cre]
Maintainer: Justin Rising <justin.rising@us.af.mil>
Diff between rankUncertainty versions 1.0.0.0 dated 2021-07-12 and 1.0.1.0 dated 2021-07-27
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- src/RcppExports.cpp | 5 +++++ src/makeCanonicalRep.cpp | 2 +- tests/testthat/test-generateIntervals.R | 6 +----- 5 files changed, 14 insertions(+), 14 deletions(-)
More information about rankUncertainty at CRAN
Permanent link
Title: Download and Import Open Stree tMap Data Extracts
Description: Match, download, convert and import Open Street Map data extracts
obtained from several providers.
Author: Andrea Gilardi [aut, cre] (<https://orcid.org/0000-0002-9424-7439>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>),
Barry Rowlingson [ctb] (<https://orcid.org/0000-0002-8586-6625>),
Salva Fernández [rev] (Salva reviewed the package (v. 0.1) for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/395>),
Nicholas Potter [rev] (Nicholas reviewed the package (v. 0.1) for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/395>)
Maintainer: Andrea Gilardi <andrea.gilardi@unimib.it>
Diff between osmextract versions 0.3.0 dated 2021-06-10 and 0.3.1 dated 2021-07-27
osmextract-0.3.0/osmextract/data/datalist |only osmextract-0.3.1/osmextract/DESCRIPTION | 12 osmextract-0.3.1/osmextract/MD5 | 126 osmextract-0.3.1/osmextract/NAMESPACE | 47 osmextract-0.3.1/osmextract/NEWS.md | 157 osmextract-0.3.1/osmextract/R/data.R | 248 - osmextract-0.3.1/osmextract/R/download.R | 326 - osmextract-0.3.1/osmextract/R/find.R | 244 - osmextract-0.3.1/osmextract/R/get-key-values.R | 696 +-- osmextract-0.3.1/osmextract/R/get-network.R |only osmextract-0.3.1/osmextract/R/get.R | 522 +- osmextract-0.3.1/osmextract/R/globals.R | 16 osmextract-0.3.1/osmextract/R/match.R | 989 ++-- osmextract-0.3.1/osmextract/R/osmextract-package.R |only osmextract-0.3.1/osmextract/R/providers.R | 174 osmextract-0.3.1/osmextract/R/read.R | 618 +- osmextract-0.3.1/osmextract/R/search.R | 58 osmextract-0.3.1/osmextract/R/update.R | 414 - osmextract-0.3.1/osmextract/R/utils.R | 90 osmextract-0.3.1/osmextract/R/vectortranslate.R | 1102 ++--- osmextract-0.3.1/osmextract/R/zzz.R | 54 osmextract-0.3.1/osmextract/build/vignette.rds |binary osmextract-0.3.1/osmextract/inst/doc/osmextract.R | 808 +-- osmextract-0.3.1/osmextract/inst/doc/osmextract.Rmd | 1702 +++---- osmextract-0.3.1/osmextract/inst/doc/osmextract.html | 2194 +++++----- osmextract-0.3.1/osmextract/inst/doc/providers.R | 48 osmextract-0.3.1/osmextract/inst/doc/providers.Rmd | 190 osmextract-0.3.1/osmextract/inst/doc/providers.html | 640 +- osmextract-0.3.1/osmextract/inst/doc/providers_comparisons.R | 148 osmextract-0.3.1/osmextract/inst/doc/providers_comparisons.Rmd | 308 - osmextract-0.3.1/osmextract/inst/doc/providers_comparisons.html | 665 +-- osmextract-0.3.1/osmextract/inst/osmconf.ini | 254 - osmextract-0.3.1/osmextract/man/bbbike_zones.Rd | 88 osmextract-0.3.1/osmextract/man/figures/README-points-lines-iow-2.png |binary osmextract-0.3.1/osmextract/man/figures/logo.svg | 272 - osmextract-0.3.1/osmextract/man/geofabrik_zones.Rd | 152 osmextract-0.3.1/osmextract/man/oe_download.Rd | 204 osmextract-0.3.1/osmextract/man/oe_download_directory.Rd | 42 osmextract-0.3.1/osmextract/man/oe_find.Rd | 170 osmextract-0.3.1/osmextract/man/oe_get.Rd | 486 +- osmextract-0.3.1/osmextract/man/oe_get_keys.Rd | 266 - osmextract-0.3.1/osmextract/man/oe_get_network.Rd |only osmextract-0.3.1/osmextract/man/oe_match.Rd | 366 - osmextract-0.3.1/osmextract/man/oe_match_pattern.Rd | 74 osmextract-0.3.1/osmextract/man/oe_providers.Rd | 54 osmextract-0.3.1/osmextract/man/oe_read.Rd | 370 - osmextract-0.3.1/osmextract/man/oe_search.Rd | 70 osmextract-0.3.1/osmextract/man/oe_update.Rd | 164 osmextract-0.3.1/osmextract/man/oe_vectortranslate.Rd | 464 +- osmextract-0.3.1/osmextract/man/openstreetmap_fr_zones.Rd | 80 osmextract-0.3.1/osmextract/man/osmextract-package.Rd |only osmextract-0.3.1/osmextract/man/test_zones.Rd | 34 osmextract-0.3.1/osmextract/tests/testthat.R | 8 osmextract-0.3.1/osmextract/tests/testthat/_snaps/get-keys.md | 60 osmextract-0.3.1/osmextract/tests/testthat/test-download.R | 98 osmextract-0.3.1/osmextract/tests/testthat/test-find.R | 90 osmextract-0.3.1/osmextract/tests/testthat/test-get-keys.R | 314 - osmextract-0.3.1/osmextract/tests/testthat/test-get-network.R |only osmextract-0.3.1/osmextract/tests/testthat/test-get.R | 60 osmextract-0.3.1/osmextract/tests/testthat/test-match.R | 326 - osmextract-0.3.1/osmextract/tests/testthat/test-providers.R | 8 osmextract-0.3.1/osmextract/tests/testthat/test-read.R | 421 - osmextract-0.3.1/osmextract/tests/testthat/test-update.R | 39 osmextract-0.3.1/osmextract/tests/testthat/test-vectortranslate.R | 180 osmextract-0.3.1/osmextract/vignettes/osmextract.Rmd | 1702 +++---- osmextract-0.3.1/osmextract/vignettes/providers.Rmd | 190 osmextract-0.3.1/osmextract/vignettes/providers_comparisons.Rmd | 308 - 67 files changed, 10268 insertions(+), 9742 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2021) <arXiv:2106.04997>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>),
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michał Bojanowski [ctb],
Ben Bolker [ctb],
Christian Schmid [ctb]
Maintainer: Pavel N. Krivitsky <pavel+ergm@unsw.edu.au>
Diff between ergm versions 4.0.1 dated 2021-06-21 and 4.1.2 dated 2021-07-27
ergm-4.0.1/ergm/tests/testthat/test-proposal-bdtnt.R |only ergm-4.0.1/ergm/tests/testthat/test-proposal-strattnt.R |only ergm-4.1.2/ergm/DESCRIPTION | 16 - ergm-4.1.2/ergm/MD5 | 96 +++--- ergm-4.1.2/ergm/NAMESPACE | 1 ergm-4.1.2/ergm/R/InitErgmConstraint.R | 6 ergm-4.1.2/ergm/R/InitErgmConstraint.hints.R | 51 +-- ergm-4.1.2/ergm/R/InitErgmProposal.R | 32 +- ergm-4.1.2/ergm/R/InitErgmTerm.operator.R | 23 + ergm-4.1.2/ergm/R/check.ErgmTerm.R | 14 ergm-4.1.2/ergm/R/ergm-package.R | 1 ergm-4.1.2/ergm/R/ergm.R | 2 ergm-4.1.2/ergm/R/ergm.bounddeg.R | 1 ergm-4.1.2/ergm/R/ergm.etamap.R | 10 ergm-4.1.2/ergm/R/ergm.getMCMCsample.R | 12 ergm-4.1.2/ergm/R/ergm_model.R | 14 ergm-4.1.2/ergm/R/ergm_proposal.R | 1 ergm-4.1.2/ergm/R/get.node.attr.R | 4 ergm-4.1.2/ergm/R/gof.ergm.R | 2 ergm-4.1.2/ergm/R/param_names.R | 2 ergm-4.1.2/ergm/R/summary.ergm.R | 2 ergm-4.1.2/ergm/build/ergm.pdf |binary ergm-4.1.2/ergm/build/partial.rdb |binary ergm-4.1.2/ergm/inst/CITATION | 6 ergm-4.1.2/ergm/inst/NEWS.Rd | 50 +++ ergm-4.1.2/ergm/inst/doc/ergm-term-crossRef.html | 33 +- ergm-4.1.2/ergm/inst/doc/ergm.pdf |binary ergm-4.1.2/ergm/inst/doc/nodal_attributes.html | 6 ergm-4.1.2/ergm/inst/include/ergm_BDStratBlocks.h | 183 +++++++----- ergm-4.1.2/ergm/inst/include/ergm_changestats_auxnet.h | 22 + ergm-4.1.2/ergm/inst/include/ergm_stubs.c | 80 ----- ergm-4.1.2/ergm/inst/include/ergm_weighted_population.h | 199 +++++++++++--- ergm-4.1.2/ergm/man/check.ErgmTerm.Rd | 6 ergm-4.1.2/ergm/man/ergm-constraints.Rd | 11 ergm-4.1.2/ergm/man/ergm-package.Rd | 1 ergm-4.1.2/ergm/man/ergm-terms.Rd | 2 ergm-4.1.2/ergm/man/ergm_bd_init.Rd | 1 ergm-4.1.2/ergm/man/ergm_dyadgen_select.Rd | 1 ergm-4.1.2/ergm/man/ergm_model.Rd | 1 ergm-4.1.2/ergm/man/nodal_attributes-API.Rd | 5 ergm-4.1.2/ergm/src/MHproposals.c | 78 ++--- ergm-4.1.2/ergm/src/changestats_auxnet.c | 16 - ergm-4.1.2/ergm/src/changestats_interaction.c | 2 ergm-4.1.2/ergm/src/ergm_dyadgen.c | 5 ergm-4.1.2/ergm/src/init.c | 2 ergm-4.1.2/ergm/src/test_weighted_population.c |only ergm-4.1.2/ergm/tests/testthat/test-offsets.R | 2 ergm-4.1.2/ergm/tests/testthat/test-operators.R | 30 +- ergm-4.1.2/ergm/tests/testthat/test-proposal-bdstrattnt.R | 179 ++++++++++++ ergm-4.1.2/ergm/tests/testthat/test-weighted-population.R |only ergm-4.1.2/ergm/tests/u_function.R | 3 51 files changed, 801 insertions(+), 413 deletions(-)
Title: Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://euroqol.org/>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://euroqol.org/eq-5d-instruments/eq-5d-3l-about/>) or a five-level
(EQ-5D-5L, <https://euroqol.org/eq-5d-instruments/eq-5d-5l-about/>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension scores. 29 TTO and 11 VAS EQ-5D-3L
value sets including those for countries in Szende et al (2007)
<doi:10.1007/1-4020-5511-0> and Szende et al (2014)
<doi:10.1007/978-94-007-7596-1>, 28 EQ-5D-5L EQ-VT value sets from the
EuroQol website, the EQ-5D-5L crosswalk value sets developed by
van Hout et al. (2012) <doi:10.1016/j.jval.2012.02.008>, the
crosswalk value set for Russia and reverse crosswalk value sets. Two
EQ-5D-Y value sets are also included. Methods are also included for the
analysis of EQ-5D profiles along with a shiny web tool to enable the
calculation, visualisation and automated statistical analysis of EQ-5D
data via a web browser using EQ-5D dimension scores stored in CSV or
Excel files.
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.9.0 dated 2021-04-12 and 0.10.0 dated 2021-07-27
DESCRIPTION | 23 ++++++----- MD5 | 43 ++++++++++++--------- NAMESPACE | 1 NEWS.md | 14 +++++++ R/data.R | 17 +++++++- R/eq5d.R | 13 +++++- R/eq5drcw.R |only README.md | 56 +++++++++++++++++----------- data/rcw.RData |only data/tto.RData |binary data/vt.RData |binary inst/doc/eq5d.R | 6 +++ inst/doc/eq5d.Rmd | 14 +++++-- inst/doc/eq5d.html | 84 +++++++++++++++++++++++------------------- inst/shiny/server.R | 3 + man/RCW.Rd |only man/TTO.Rd | 4 +- man/VT.Rd | 4 +- man/eq5d-package.Rd | 17 ++++---- man/eq5drcw.Rd |only tests/testthat/test-eq5d.R | 1 tests/testthat/test-eq5d3l.R | 8 ++++ tests/testthat/test-eq5d5l.R | 24 ++++++++---- tests/testthat/test-eq5drcw.R |only vignettes/eq5d.Rmd | 14 +++++-- 25 files changed, 225 insertions(+), 121 deletions(-)
Title: Adapted Pair Correlation Function
Description: The adapted pair correlation function transfers the concept of the
pair correlation function from point patterns to patterns of objects of
finite size and irregular shape (e.g. lakes within a country). This is a
reimplementation of the method suggested by Nuske et al. (2009)
<doi:10.1016/j.foreco.2009.09.050> using the libraries 'GEOS' and 'GDAL'
directly instead of through 'PostGIS'.
Author: Robert Nuske [aut, cre] (<https://orcid.org/0000-0001-9773-2061>)
Maintainer: Robert Nuske <robert.nuske@nw-fva.de>
Diff between apcf versions 0.1.5 dated 2020-07-05 and 0.1.6 dated 2021-07-27
DESCRIPTION | 9 +-- MD5 | 31 +++++------ NEWS.md | 4 + R/pat2dists.R | 2 README.md | 8 +- build/partial.rdb |binary build/vignette.rds |binary configure | 2 configure.ac | 2 inst/doc/intro.Rmd | 2 inst/doc/intro.html | 137 ++++++++++++++++++++++++-------------------------- man/pat2dists.Rd | 2 src/Makevars.ucrt |only src/Makevars.win | 22 ++++---- src/import_export.cpp | 9 +-- tools/winlibs.R | 7 +- vignettes/intro.Rmd | 2 17 files changed, 121 insertions(+), 118 deletions(-)
Title: Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Description: Designed to be compatible with the R package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this 'Python' 'Boto3' Software Development Kit ('SDK')
<https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between RAthena versions 2.0.1 dated 2021-02-24 and 2.1.0 dated 2021-07-27
DESCRIPTION | 11 - MD5 | 36 ++-- NEWS.md | 10 + R/Connection.R | 88 +++++---- R/Driver.R | 24 ++ R/File_Parser.R | 234 +++++++++++++++----------- R/Result.R | 4 R/sql_translate_env.R | 243 +++++++++++++++++++++++---- R/table.R | 4 R/util.R | 1 build/vignette.rds |binary man/dbConnect-AthenaDriver-method.Rd | 5 man/install_boto.Rd | 5 tests/testthat/test-datatransfer-datatable.R | 8 tests/testthat/test-datatransfer-vroom.R | 6 tests/testthat/test-dbDisconnect.R | 7 tests/testthat/test-dplyr-sql-trans-env.R | 98 ++++++++++ tests/testthat/test-file-parser.R | 41 +++- tests/testthat/test-metadata.R | 2 19 files changed, 606 insertions(+), 221 deletions(-)
Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws'
<https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between noctua versions 2.0.1 dated 2021-02-24 and 2.1.0 dated 2021-07-27
DESCRIPTION | 12 - MD5 | 34 +-- NEWS.md | 10 R/Connection.R | 116 +++++----- R/Driver.R | 24 ++ R/File_Parser.R | 230 +++++++++++++-------- R/Result.R | 4 R/Table.R | 4 R/sql_translate_env.R | 285 +++++++++++++++++++++------ R/utils.R | 45 +++- build/vignette.rds |binary man/dbConnect-AthenaDriver-method.Rd | 5 tests/testthat/test-datatransfer-datatable.R | 6 tests/testthat/test-datatransfer-vroom.R | 6 tests/testthat/test-dbDisconnect.R | 7 tests/testthat/test-dplyr-sql-trans-env.R | 98 +++++++++ tests/testthat/test-file-parser.R | 42 ++- tests/testthat/test-metadata.R | 2 18 files changed, 667 insertions(+), 263 deletions(-)
Title: MAP-Bayesian Estimation of PK Parameters
Description: Performs maximum a posteriori Bayesian estimation of individual pharmacokinetic parameters from a model defined in `mrgsolve`, typically for model-based therapeutic drug monitoring. Internally computes an objective function value from model and data, performs optimization and returns predictions in a convenient format.
Author: Felicien Le Louedec [aut, cre]
(<https://orcid.org/0000-0003-3699-2729>)
Maintainer: Felicien Le Louedec <lelouedec.felicien@iuct-oncopole.fr>
Diff between mapbayr versions 0.4.1 dated 2021-04-30 and 0.5.0 dated 2021-07-27
mapbayr-0.4.1/mapbayr/tests/testthat/test-LBFGSB_donotmove.R |only mapbayr-0.5.0/mapbayr/DESCRIPTION | 6 mapbayr-0.5.0/mapbayr/MD5 | 62 - mapbayr-0.5.0/mapbayr/NAMESPACE | 1 mapbayr-0.5.0/mapbayr/NEWS.md | 18 mapbayr-0.5.0/mapbayr/R/get.R | 355 ++--- mapbayr-0.5.0/mapbayr/R/mapbayest.R | 177 +- mapbayr-0.5.0/mapbayr/R/mapbayest_check_and_preprocess.R | 474 ++++--- mapbayr-0.5.0/mapbayr/R/mapbayest_ofv_computation.R | 150 +- mapbayr-0.5.0/mapbayr/R/mapbayest_optimization.R | 132 +- mapbayr-0.5.0/mapbayr/R/mapbayest_postprocess.R | 197 +-- mapbayr-0.5.0/mapbayr/R/mapbayests.R | 595 +++++----- mapbayr-0.5.0/mapbayr/R/mrgmod.R | 448 +++---- mapbayr-0.5.0/mapbayr/R/read_mrgsolve_model.R | 60 - mapbayr-0.5.0/mapbayr/R/zzz_utils.R | 98 - mapbayr-0.5.0/mapbayr/README.md | 39 mapbayr-0.5.0/mapbayr/inst/WORDLIST | 1 mapbayr-0.5.0/mapbayr/man/compute_ofv.Rd | 4 mapbayr-0.5.0/mapbayr/man/data_helpers.Rd | 68 - mapbayr-0.5.0/mapbayr/man/mapbayest.Rd | 2 mapbayr-0.5.0/mapbayr/man/mbrlib.Rd | 28 mapbayr-0.5.0/mapbayr/man/obs_lines.mrgmod.Rd | 56 mapbayr-0.5.0/mapbayr/man/postprocess.Rd | 5 mapbayr-0.5.0/mapbayr/tests/testthat/test-annotated.R |only mapbayr-0.5.0/mapbayr/tests/testthat/test-compute_ofv.R | 2 mapbayr-0.5.0/mapbayr/tests/testthat/test-get_param.R | 61 - mapbayr-0.5.0/mapbayr/tests/testthat/test-mbrest.R | 4 mapbayr-0.5.0/mapbayr/tests/testthat/test-methods.R | 58 mapbayr-0.5.0/mapbayr/tests/testthat/test-multi-ID.R | 10 mapbayr-0.5.0/mapbayr/tests/testthat/test-no_data.R | 19 mapbayr-0.5.0/mapbayr/tests/testthat/test-output.R | 4 mapbayr-0.5.0/mapbayr/tests/testthat/test-plot.R |only mapbayr-0.5.0/mapbayr/tests/testthat/test-read_mrgsolve_model.R | 59 mapbayr-0.5.0/mapbayr/tests/testthat/test-reset-conditions.R |only 34 files changed, 1739 insertions(+), 1454 deletions(-)
Title: Violin Plot
Description: A violin plot is a combination of a box plot and a kernel density plot. This package allows extensive customisation of violin plots.
Author: Daniel Adler [aut, cph],
S. Thomas Kelly [aut, cre],
Tom M. Elliott [ctb]
Maintainer: S. Thomas Kelly <tomkellygenetics@gmail.com>
Diff between vioplot versions 0.3.6 dated 2021-03-29 and 0.3.7 dated 2021-07-27
DESCRIPTION | 13 +-- MD5 | 18 ++--- NEWS.md | 4 + build/vignette.rds |binary inst/CITATION | 4 - inst/doc/violin_area.html | 57 +++-------------- inst/doc/violin_customisation.html | 53 +++------------- inst/doc/violin_formulae.html | 53 +++------------- inst/doc/violin_split.html | 121 +++++++++++-------------------------- inst/doc/violin_ylog.html | 53 +++------------- 10 files changed, 103 insertions(+), 273 deletions(-)
More information about twangMediation at CRAN
Permanent link
Title: Methods and Data for Spatial Epidemiology
Description: Methods and data for cluster detection and disease mapping.
Author: Cici Chen [ctb],
Albert Y. Kim [aut, cre] (<https://orcid.org/0000-0001-7824-306X>),
Michelle Ross [ctb],
Jon Wakefield [aut],
Mikael Moise [aut] (<https://orcid.org/0000-0002-3608-1178>)
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>
Diff between SpatialEpi versions 1.2.3 dated 2018-06-02 and 1.2.4 dated 2021-07-27
SpatialEpi-1.2.3/SpatialEpi/build/partial.rdb |only SpatialEpi-1.2.3/SpatialEpi/inst/extdata |only SpatialEpi-1.2.3/SpatialEpi/man/MCMC_simulation.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/NumericVectorEquality.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/ProbSampleReplace.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/SpatialEpi-package.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/besag_newell_internal.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/binomialLogLkhd.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/check_overlap.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/clean_moves_matrix.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/coeff.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/computeAllLogLkhd.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/kulldorffMC.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/ldmultinom.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/ldnbinom.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/normalize.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/poissonLogLkhd.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/return_birth_moves.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/return_death_moves.Rd |only SpatialEpi-1.2.3/SpatialEpi/man/return_local_moves.Rd |only SpatialEpi-1.2.4/SpatialEpi/DESCRIPTION | 26 SpatialEpi-1.2.4/SpatialEpi/MD5 | 154 +- SpatialEpi-1.2.4/SpatialEpi/NAMESPACE | 38 SpatialEpi-1.2.4/SpatialEpi/NEWS.md | 13 SpatialEpi-1.2.4/SpatialEpi/R/EBpostdens.R | 34 SpatialEpi-1.2.4/SpatialEpi/R/EBpostthresh.R | 33 SpatialEpi-1.2.4/SpatialEpi/R/GammaPriorCh.R | 31 SpatialEpi-1.2.4/SpatialEpi/R/LogNormalPriorCh.R | 27 SpatialEpi-1.2.4/SpatialEpi/R/NYleukemia.R |only SpatialEpi-1.2.4/SpatialEpi/R/NYleukemia_sf.R |only SpatialEpi-1.2.4/SpatialEpi/R/SpatialEpi-package.R |only SpatialEpi-1.2.4/SpatialEpi/R/bayes_cluster.R | 290 ++- SpatialEpi-1.2.4/SpatialEpi/R/besag_newell.R | 79 + SpatialEpi-1.2.4/SpatialEpi/R/circle.R | 26 SpatialEpi-1.2.4/SpatialEpi/R/create_geo_objects.R | 41 SpatialEpi-1.2.4/SpatialEpi/R/eBayes.R | 35 SpatialEpi-1.2.4/SpatialEpi/R/estimate_lambda.R | 23 SpatialEpi-1.2.4/SpatialEpi/R/expected.R | 37 SpatialEpi-1.2.4/SpatialEpi/R/grid2latlong.R | 34 SpatialEpi-1.2.4/SpatialEpi/R/kulldorff.R | 90 + SpatialEpi-1.2.4/SpatialEpi/R/latlong2grid.R | 42 SpatialEpi-1.2.4/SpatialEpi/R/mapvariable.R | 35 SpatialEpi-1.2.4/SpatialEpi/R/pennLC.R |only SpatialEpi-1.2.4/SpatialEpi/R/plotmap.R | 34 SpatialEpi-1.2.4/SpatialEpi/R/polygon2spatial_polygon.R | 50 SpatialEpi-1.2.4/SpatialEpi/R/process_MCMC_sample.R | 24 SpatialEpi-1.2.4/SpatialEpi/R/scotland.R |only SpatialEpi-1.2.4/SpatialEpi/R/scotland_sf.R |only SpatialEpi-1.2.4/SpatialEpi/R/sf_objects.R |only SpatialEpi-1.2.4/SpatialEpi/R/zones.R | 29 SpatialEpi-1.2.4/SpatialEpi/build/vignette.rds |only SpatialEpi-1.2.4/SpatialEpi/data/NYleukemia_sf.rda |only SpatialEpi-1.2.4/SpatialEpi/data/pennLC_sf.rda |only SpatialEpi-1.2.4/SpatialEpi/data/scotland_sf.rda |only SpatialEpi-1.2.4/SpatialEpi/inst/doc |only SpatialEpi-1.2.4/SpatialEpi/man/EBpostdens.Rd | 75 - SpatialEpi-1.2.4/SpatialEpi/man/EBpostthresh.Rd | 53 SpatialEpi-1.2.4/SpatialEpi/man/GammaPriorCh.Rd | 36 SpatialEpi-1.2.4/SpatialEpi/man/LogNormalPriorCh.Rd | 38 SpatialEpi-1.2.4/SpatialEpi/man/NYleukemia.Rd | 40 SpatialEpi-1.2.4/SpatialEpi/man/NYleukemia_sf.Rd |only SpatialEpi-1.2.4/SpatialEpi/man/bayes_cluster.Rd | 95 - SpatialEpi-1.2.4/SpatialEpi/man/besag_newell.Rd | 73 - SpatialEpi-1.2.4/SpatialEpi/man/circle.Rd | 31 SpatialEpi-1.2.4/SpatialEpi/man/create_geo_objects.Rd | 37 SpatialEpi-1.2.4/SpatialEpi/man/eBayes.Rd | 36 SpatialEpi-1.2.4/SpatialEpi/man/estimate_lambda.Rd | 34 SpatialEpi-1.2.4/SpatialEpi/man/expected.Rd | 37 SpatialEpi-1.2.4/SpatialEpi/man/grid2latlong.Rd | 31 SpatialEpi-1.2.4/SpatialEpi/man/kulldorff.Rd | 101 - SpatialEpi-1.2.4/SpatialEpi/man/latlong2grid.Rd | 34 SpatialEpi-1.2.4/SpatialEpi/man/mapvariable.Rd | 67 SpatialEpi-1.2.4/SpatialEpi/man/pennLC.Rd | 40 SpatialEpi-1.2.4/SpatialEpi/man/pennLC_sf.Rd |only SpatialEpi-1.2.4/SpatialEpi/man/plotmap.Rd | 66 SpatialEpi-1.2.4/SpatialEpi/man/polygon2spatial_polygon.Rd | 53 SpatialEpi-1.2.4/SpatialEpi/man/process_MCMC_sample.Rd | 31 SpatialEpi-1.2.4/SpatialEpi/man/scotland.Rd | 40 SpatialEpi-1.2.4/SpatialEpi/man/scotland_sf.Rd |only SpatialEpi-1.2.4/SpatialEpi/man/zones.Rd | 38 SpatialEpi-1.2.4/SpatialEpi/src/RcppExports.cpp | 5 SpatialEpi-1.2.4/SpatialEpi/src/bayes_cluster.cpp | 943 ++++++------- SpatialEpi-1.2.4/SpatialEpi/src/cluster_detection.cpp | 106 - SpatialEpi-1.2.4/SpatialEpi/tests |only SpatialEpi-1.2.4/SpatialEpi/vignettes |only 85 files changed, 2159 insertions(+), 1206 deletions(-)
Title: R Interface to the 'PostgreSQL' Database System
Description: Database interface and 'PostgreSQL' driver for 'R'.
This package provides a Database Interface 'DBI' compliant
driver for 'R' to access 'PostgreSQL' database systems.
In order to build and install this package from source, 'PostgreSQL'
itself must be present your system to provide 'PostgreSQL' functionality
via its libraries and header files. These files are provided as
'postgresql-devel' package under some Linux distributions.
On 'macOS' and 'Microsoft Windows' system the attached 'libpq' library source will be used.
Author: Joe Conway, Dirk Eddelbuettel, Tomoaki Nishiyama, Sameer Kumar Prayaga (during 2008), Neil Tiffin
Maintainer: Tomoaki Nishiyama <tomoakin@staff.kanazawa-u.ac.jp>
Diff between RPostgreSQL versions 0.6-2 dated 2017-06-24 and 0.7 dated 2021-07-27
RPostgreSQL-0.6-2/RPostgreSQL/configure.in |only RPostgreSQL-0.7/RPostgreSQL/ChangeLog | 10 RPostgreSQL-0.7/RPostgreSQL/DESCRIPTION | 12 RPostgreSQL-0.7/RPostgreSQL/LICENSE | 10 RPostgreSQL-0.7/RPostgreSQL/MD5 | 52 RPostgreSQL-0.7/RPostgreSQL/R/PostgreSQLSupport.R | 32 RPostgreSQL-0.7/RPostgreSQL/configure | 722 +- RPostgreSQL-0.7/RPostgreSQL/configure.ac |only RPostgreSQL-0.7/RPostgreSQL/man/PostgreSQL.Rd | 2 RPostgreSQL-0.7/RPostgreSQL/man/PostgreSQLConnection-class.Rd | 2 RPostgreSQL-0.7/RPostgreSQL/man/PostgreSQLDriver-class.Rd | 2 RPostgreSQL-0.7/RPostgreSQL/man/PostgreSQLObject-class.Rd | 2 RPostgreSQL-0.7/RPostgreSQL/man/PostgreSQLResult-class.Rd | 2 RPostgreSQL-0.7/RPostgreSQL/man/dbReadTable-methods.Rd | 2 RPostgreSQL-0.7/RPostgreSQL/src/Makevars.win | 2 RPostgreSQL-0.7/RPostgreSQL/src/RS-PostgreSQL.c | 24 RPostgreSQL-0.7/RPostgreSQL/src/S4R.h | 61 RPostgreSQL-0.7/RPostgreSQL/src/config.guess | 1165 ++-- RPostgreSQL-0.7/RPostgreSQL/src/config.sub | 2633 +++++----- RPostgreSQL-0.7/RPostgreSQL/src/libpq/Makefile.global.win32 | 10 RPostgreSQL-0.7/RPostgreSQL/src/libpq/Makefile.global.win64 | 10 RPostgreSQL-0.7/RPostgreSQL/src/libpq/Makefile.win | 1 RPostgreSQL-0.7/RPostgreSQL/tests/dbColumnInfo.R | 2 RPostgreSQL-0.7/RPostgreSQL/tests/dbColumnInfo.Rout.save | 9 RPostgreSQL-0.7/RPostgreSQL/tests/dbWriteTableFailTest.Rout.save | 5 RPostgreSQL-0.7/RPostgreSQL/tests/openSendQuery.Rout.save | 8 RPostgreSQL-0.7/RPostgreSQL/tests/unknowntype.Rout.save | 5 RPostgreSQL-0.7/RPostgreSQL/tests/utf.R |only RPostgreSQL-0.7/RPostgreSQL/tests/utf.Rout.save |only 29 files changed, 2557 insertions(+), 2228 deletions(-)
Title: R Implementation of Leiden Clustering Algorithm
Description: Implements the 'Python leidenalg' module to be called in R.
Enables clustering using the leiden algorithm for partition a graph into communities.
See the 'Python' repository for more details: <https://github.com/vtraag/leidenalg>
Traag et al (2018) From Louvain to Leiden: guaranteeing well-connected communities. <arXiv:1810.08473>.
Author: S. Thomas Kelly [aut, cre, trl],
Vincent A. Traag [com]
Maintainer: S. Thomas Kelly <tomkellygenetics@gmail.com>
Diff between leiden versions 0.3.8 dated 2021-05-24 and 0.3.9 dated 2021-07-27
DESCRIPTION | 13 ++-- MD5 | 16 ++--- NEWS.md | 6 +- inst/CITATION | 4 - inst/doc/benchmarking.html | 118 ++++++++++++++++++++++---------------------- inst/doc/run_bipartite.html | 4 - inst/doc/run_igraph.html | 30 +++++------ inst/doc/run_leiden.html | 32 +++++------ inst/doc/run_multiplex.html | 20 +++---- 9 files changed, 124 insertions(+), 119 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [aut, cre] (<https://orcid.org/0000-0001-5676-5107>),
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>),
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Karissa Whiting [ctb],
Yves Rosseel [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb] (<https://orcid.org/0000-0003-0523-7309>),
Ethan Christensen [ctb],
Steven Pav [ctb],
Paul PJ [ctb],
Ben Schneider [ctb],
Patrick Kennedy [ctb],
Lily Medina [ctb],
Brian Fannin [ctb],
Jason Muhlenkamp [ctb],
Matt Lehman [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Nic Crane [ctb],
Andrew Bates [ctb],
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Hideaki Hayashi [ctb],
Luis Tobalina [ctb],
Annie Wang [ctb],
Wei Yang Tham [ctb],
Clara Wang [ctb],
Abby Smith [ctb] (<https://orcid.org/0000-0002-3207-0375>),
Jasper Cooper [ctb] (<https://orcid.org/0000-0002-8639-3188>),
E Auden Krauska [ctb] (<https://orcid.org/0000-0002-1466-5850>),
Alex Wang [ctb],
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Charles Gray [ctb] (<https://orcid.org/0000-0002-9978-011X>),
Jared Wilber [ctb],
Vilmantas Gegzna [ctb] (<https://orcid.org/0000-0002-9500-5167>),
Eduard Szoecs [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Angus Moore [ctb],
Nick Williams [ctb],
Marius Barth [ctb] (<https://orcid.org/0000-0002-3421-6665>),
Bruna Wundervald [ctb] (<https://orcid.org/0000-0001-8163-220X>),
Joyce Cahoon [ctb] (<https://orcid.org/0000-0001-7217-4702>),
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>),
Kevin Zarca [ctb],
Shiro Kuriwaki [ctb] (<https://orcid.org/0000-0002-5687-2647>),
Lukas Wallrich [ctb] (<https://orcid.org/0000-0003-2121-5177>),
James Martherus [ctb] (<https://orcid.org/0000-0002-8285-3300>),
Chuliang Xiao [ctb] (<https://orcid.org/0000-0002-8466-9398>),
Joseph Larmarange [ctb],
Max Kuhn [ctb],
Michal Bojanowski [ctb],
Hakon Malmedal [ctb],
Clara Wang [ctb],
Sergio Oller [ctb],
Luke Sonnet [ctb],
Jim Hester [ctb],
Cory Brunson [ctb],
Ben Schneider [ctb],
Bernie Gray [ctb] (<https://orcid.org/0000-0001-9190-6032>),
Mara Averick [ctb],
Aaron Jacobs [ctb],
Andreas Bender [ctb],
Sven Templer [ctb],
Paul-Christian Buerkner [ctb],
Matthew Kay [ctb],
Erwan Le Pennec [ctb],
Johan Junkka [ctb],
Hao Zhu [ctb],
Benjamin Soltoff [ctb],
Zoe Wilkinson Saldana [ctb],
Tyler Littlefield [ctb],
Charles T. Gray [ctb],
Shabbh E. Banks [ctb],
Serina Robinson [ctb],
Roger Bivand [ctb],
Riinu Ots [ctb],
Nicholas Williams [ctb],
Nina Jakobsen [ctb],
Michael Weylandt [ctb],
Lisa Lendway [ctb],
Karl Hailperin [ctb],
Josue Rodriguez [ctb],
Jenny Bryan [ctb],
Chris Jarvis [ctb],
Greg Macfarlane [ctb],
Brian Mannakee [ctb],
Drew Tyre [ctb],
Shreyas Singh [ctb],
Laurens Geffert [ctb],
Hong Ooi [ctb],
Henrik Bengtsson [ctb],
Eduard Szocs [ctb],
David Hugh-Jones [ctb],
Matthieu Stigler [ctb],
Hugo Tavares [ctb] (<https://orcid.org/0000-0001-9373-2726>),
R. Willem Vervoort [ctb],
Brenton M. Wiernik [ctb],
Josh Yamamoto [ctb],
Jasme Lee [ctb]
Maintainer: Simon Couch <scouch2@jhu.edu>
Diff between broom versions 0.7.8 dated 2021-06-24 and 0.7.9 dated 2021-07-27
broom-0.7.8/broom/R/rchoice-tidiers.R |only broom-0.7.8/broom/man/glance.Rchoice.Rd |only broom-0.7.8/broom/man/tidy.Rchoice.Rd |only broom-0.7.8/broom/tests/testthat/test-rchoice.R |only broom-0.7.9/broom/DESCRIPTION | 24 +- broom-0.7.9/broom/MD5 | 40 +-- broom-0.7.9/broom/NAMESPACE | 2 broom-0.7.9/broom/NEWS.md | 6 broom-0.7.9/broom/R/cmprsk-tidiers.R | 2 broom-0.7.9/broom/R/ergm-tidiers.R | 29 ++ broom-0.7.9/broom/R/fixest-tidiers.R | 2 broom-0.7.9/broom/R/lfe-tidiers.R | 5 broom-0.7.9/broom/inst/WORDLIST | 2 broom-0.7.9/broom/inst/doc/adding-tidiers.html | 4 broom-0.7.9/broom/inst/doc/available-methods.html | 262 ++++++++++------------ broom-0.7.9/broom/inst/doc/bootstrapping.html | 4 broom-0.7.9/broom/inst/doc/broom.html | 34 +- broom-0.7.9/broom/inst/doc/broom_and_dplyr.html | 30 +- broom-0.7.9/broom/man/augment.felm.Rd | 5 broom-0.7.9/broom/man/broom.Rd | 1 broom-0.7.9/broom/man/glance.felm.Rd | 5 broom-0.7.9/broom/man/tidy.ergm.Rd | 24 ++ broom-0.7.9/broom/man/tidy.felm.Rd | 5 23 files changed, 275 insertions(+), 211 deletions(-)
More information about changepointTests at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-25 1.3-5
2019-12-18 1.3-4
2019-03-10 1.3-3
2018-10-09 1.3-2
2018-10-02 1.3-1
2018-08-09 1.3
2018-02-21 1.2
2017-06-10 1.1
2016-07-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-09 0.0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-05 0.2.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-04 1.3-6
2020-04-25 1.3-5
2020-01-08 1.3-4
2019-03-20 1.3-2
2018-10-04 1.3-1
2018-08-13 1.3
2018-07-03 1.2-3
2018-05-25 1.2-2
Title: Shapley Value Regression for Relative Importance of Attributes
Description: Shapley Value Regression for calculating the relative importance of independent variables in linear regression with avoiding the collinearity.
Author: Jingyi Liang
Maintainer: Jingyi Liang <jingyiliang19@163.com>
Diff between ShapleyValue versions 0.1.0 dated 2021-05-25 and 0.2.0 dated 2021-07-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/ShapleyValue.R | 24 ++++++++++++++---------- 3 files changed, 19 insertions(+), 15 deletions(-)
Title: Efficient Computation of Ordinary and Generalized Poisson
Binomial Distributions
Description: Efficient implementations of multiple exact and approximate methods as described in Hong (2013) <doi:10.1016/j.csda.2012.10.006>, Biscarri, Zhao & Brunner (2018) <doi:10.1016/j.csda.2018.01.007> and Zhang, Hong & Balakrishnan (2018) <doi:10.1080/00949655.2018.1440294> for computing the probability mass, cumulative distribution and quantile functions, as well as generating random numbers for both the ordinary and generalized Poisson binomial distribution.
Author: Florian Junge [aut, cre]
Maintainer: Florian Junge <florian.junge@h-da.de>
Diff between PoissonBinomial versions 1.2.3 dated 2021-03-28 and 1.2.4 dated 2021-07-27
DESCRIPTION | 8 MD5 | 28 NAMESPACE | 1 NEWS.md | 5 R/RcppExports.R | 240 +++---- R/gpbinom.R | 692 ++++++++++----------- R/pbinom.R | 913 ++++++++++++++--------------- R/utility.R | 18 build/partial.rdb |binary build/vignette.rds |binary inst/doc/proc_approx.html | 24 inst/doc/proc_exact.html | 18 inst/include/PoissonBinomial_RcppExports.h | 21 src/PoissonBinomial.cpp | 12 src/RcppExports.cpp | 41 - 15 files changed, 974 insertions(+), 1047 deletions(-)
More information about PoissonBinomial at CRAN
Permanent link
Title: Utilities for Working with NEON Data
Description: NEON data packages can be accessed through the NEON Data Portal <https://www.neonscience.org>
or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from
the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files
can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting
data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and
converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.
Author: Claire Lunch [aut, cre, ctb],
Christine Laney [aut, ctb],
Nathan Mietkiewicz [aut, ctb],
Eric Sokol [aut, ctb],
Kaelin Cawley [aut, ctb],
NEON (National Ecological Observatory Network) [aut]
Maintainer: Claire Lunch <clunch@battelleecology.org>
Diff between neonUtilities versions 2.1.0 dated 2021-06-05 and 2.1.1 dated 2021-07-27
DESCRIPTION | 13 +++----- MD5 | 28 ++++++++--------- R/byFileAOP.R | 3 + R/byTileAOP.R | 3 + R/footRaster.R | 2 - R/getReadmePublicationDate.R | 67 ++++++++++++++----------------------------- R/getVarsEddy.R | 3 + R/readTableNEON.R | 3 + R/stackByTable.R | 8 +++-- R/stackEddy.R | 65 ++++++++++++++++++++++++++++++++--------- R/sysdata.rda |binary R/zipsByProduct.R | 3 + README.md | 11 +++++++ data/table_types.rda |binary man/stackEddy.Rd | 2 - 15 files changed, 121 insertions(+), 90 deletions(-)
Title: Tidy IP Addresses
Description: Classes and functions for working with IP (Internet Protocol)
addresses and networks, inspired by the Python 'ipaddress' module.
Offers full support for both IPv4 and IPv6 (Internet Protocol versions
4 and 6) address spaces. It is specifically designed to work well with
the 'tidyverse'.
Author: David Hall [aut, cre] (<https://orcid.org/0000-0002-2193-0480>)
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between ipaddress versions 0.5.2 dated 2021-06-17 and 0.5.3 dated 2021-07-27
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ inst/doc/ipaddress-examples.R | 2 +- inst/doc/ipaddress-examples.Rmd | 2 +- inst/doc/ipaddress-examples.html | 20 ++++++++++---------- tests/testthat/test-ip_to_integer.R | 2 ++ vignettes/ipaddress-examples.Rmd | 2 +- 8 files changed, 31 insertions(+), 23 deletions(-)