Title: Utility Functions of Fangzhou Xie
Description: This is a collection of some useful functions when dealing with text data.
Currently it only contains a very efficient function of decoding HTML entities
in character vectors by 'Rcpp' routine.
Author: Fangzhou Xie [aut, cre] (<https://orcid.org/0000-0001-7702-093X>)
Maintainer: Fangzhou Xie <fangzhou.xie@rutgers.edu>
Diff between xutils versions 0.0.1 dated 2021-02-17 and 0.0.2 dated 2021-09-06
DESCRIPTION | 16 +++++++++------- MD5 | 17 ++++++++++------- NEWS.md | 5 +++++ R/html_decode.R | 16 +++++++++------- R/zzz.R |only README.md | 16 ++++++++++------ build/vignette.rds |binary inst/doc/Introduction.html | 6 +++--- man/html_decode.Rd | 16 +++++++--------- tests |only 10 files changed, 53 insertions(+), 39 deletions(-)
Title: Targeted Maximum Likelihood Estimation
Description: Targeted maximum likelihood estimation of point treatment effects (Targeted Maximum Likelihood Learning, The International Journal of Biostatistics, 2(1), 2006. This version automatically estimates the additive treatment effect among the treated (ATT) and among the controls (ATC). The tmle() function calculates the adjusted marginal difference in mean outcome associated with a binary point treatment, for continuous or binary outcomes. Relative risk and odds ratio estimates are also reported for binary outcomes. Missingness in the outcome is allowed, but not in treatment assignment or baseline covariate values. The population mean is calculated when there is missingness, and no variation in the treatment assignment. The tmleMSM() function estimates the parameters of a marginal structural model for a binary point treatment effect. Effect estimation stratified by a binary mediating variable is also available. An ID argument can be used to identify repeated measures. Default settings call 'SuperLearner' to estimate the Q and g portions of the likelihood, unless values or a user-supplied regression function are passed in as arguments.
Author: Susan Gruber [aut, cre],
Mark van der Laan [aut],
Chris Kennedy [ctr]
Maintainer: Susan Gruber <sgruber@cal.berkeley.edu>
Diff between tmle versions 1.5.0-1 dated 2020-06-07 and 1.5.0.2 dated 2021-09-06
DESCRIPTION | 10 +++---- MD5 | 34 +++++++++++++------------- NEWS | 7 +++++ R/tmle.R | 62 ++++++++++++++++++++++++++----------------------- R/zzz.R | 2 - inst/CITATION | 2 - man/calcParameters.Rd | 2 - man/calcSigma.Rd | 2 - man/estimateG.Rd | 2 - man/estimateQ.Rd | 2 - man/oneStepATT.Rd | 2 - man/summary.tmle.Rd | 2 - man/summary.tmleMSM.Rd | 2 - man/tmle-package.Rd | 10 +++---- man/tmle.Rd | 18 +++++++------- man/tmle.Sl.dbarts2.Rd | 2 - man/tmleMSM.Rd | 4 +-- man/tmleNews.Rd | 2 - 18 files changed, 89 insertions(+), 78 deletions(-)
Title: Supplementary Tools for R Packages Developers
Description: Supplementary utils for CRAN maintainers and R packages developers.
Validating the library or packages.
Exploring a complexity of a specific package like evaluating sizes in bytes of all its dependencies.
Assessing the life duration of a specific package version.
Checking a CRAN package check page status for any errors and warnings.
Retrieving a DESCRIPTION or NAMESPACE file for any package version.
Comparing DESCRIPTION or NAMESPACE files between different package versions.
Getting a list of all releases for a specific package.
The Bioconductor is partly supported.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between pacs versions 0.3.3 dated 2021-08-17 and 0.3.4 dated 2021-09-06
DESCRIPTION | 8 MD5 | 29 +- NEWS.md | 10 R/comapre.R | 1 R/deps.R | 6 R/in_last.R | 6 R/namespace.R | 432 +++++++++++++++++++++---------------------- R/valid.R | 38 ++- README.md | 95 +++++---- man/lib_validate.Rd | 2 man/pac_compare_namespace.Rd | 3 man/pac_isin.Rd | 2 man/pac_islast.Rd | 4 man/pac_validate.Rd | 3 tests/testthat/files |only tests/testthat/test-base.R | 15 - 16 files changed, 351 insertions(+), 303 deletions(-)
Title: Psychometric Functions from the Waller Lab
Description: Computes fungible coefficients and Monte Carlo data. Underlying theory for these functions is described in the following publications:
Waller, N. (2008). Fungible Weights in Multiple Regression. Psychometrika, 73(4), 691-703, <DOI:10.1007/s11336-008-9066-z>.
Waller, N. & Jones, J. (2009). Locating the Extrema of Fungible Regression Weights.
Psychometrika, 74(4), 589-602, <DOI:10.1007/s11336-008-9087-7>.
Waller, N. G. (2016). Fungible Correlation Matrices:
A Method for Generating Nonsingular, Singular, and Improper Correlation Matrices for
Monte Carlo Research. Multivariate Behavioral Research, 51(4), 554-568, <DOI:10.1080/00273171.2016.1178566>.
Jones, J. A. & Waller, N. G. (2015). The normal-theory and asymptotic distribution-free (ADF)
covariance matrix of standardized regression coefficients: theoretical extensions
and finite sample behavior. Psychometrika, 80, 365-378, <DOI:10.1007/s11336-013-9380-y>.
Waller, N. G. (2018). Direct Schmid-Leiman transformations and rank-deficient loadings matrices. Psychometrika, 83, 858-870. <DOI:10.1007/s11336-017-9599-0>.
Author: Niels Waller [aut, cre],
Jeff Jones [ctb],
Casey Giordano [ctb]
Maintainer: Niels Waller <nwaller@umn.edu>
Diff between fungible versions 1.97 dated 2021-04-01 and 1.98 dated 2021-09-06
DESCRIPTION | 8 ++--- MD5 | 66 +++++++++++++++++++++++++------------------------ NAMESPACE | 2 + R/faMain.R | 2 - R/fsIndeterminacy.R |only R/rPCA.R |only R/simFA.R | 14 +++++++--- R/summary.faMain.R | 14 +++++----- inst/CITATION | 4 +- man/BiFAD.Rd | 1 man/Box26.Rd | 1 man/GenerateBoxData.Rd | 1 man/Ledermann.Rd | 1 man/SLi.Rd | 1 man/SchmidLeiman.Rd | 1 man/faAlign.Rd | 1 man/faEKC.Rd | 1 man/faIB.Rd | 1 man/faLocalMin.Rd | 1 man/faMB.Rd | 1 man/faMain.Rd | 3 +- man/faScores.Rd | 1 man/faSort.Rd | 1 man/faStandardize.Rd | 1 man/faX.Rd | 1 man/fals.Rd | 1 man/fapa.Rd | 1 man/fareg.Rd | 1 man/fsIndeterminacy.Rd |only man/orderFactors.Rd | 1 man/print.faMB.Rd | 1 man/print.faMain.Rd | 1 man/promaxQ.Rd | 1 man/rPCA.Rd |only man/summary.faMB.Rd | 1 man/summary.faMain.Rd | 13 +++++---- 36 files changed, 93 insertions(+), 56 deletions(-)
Title: Manipulate MCMC Samples
Description: Functions and classes to store, manipulate and summarise
Monte Carlo Markov Chain (MCMC) samples. For more information see
Brooks et al. (2011) <isbn:978-1-4200-7941-8>.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between mcmcr versions 0.6.0 dated 2021-08-05 and 0.6.1 dated 2021-09-06
DESCRIPTION | 13 +++-- MD5 | 68 ++++++++++++++++--------------- NEWS.md | 4 + R/bind-chains.R | 4 + R/coef.R | 16 +++---- R/pars.R | 2 R/test-helpers.R |only build/mcmcr.pdf |binary inst/WORDLIST | 1 man/coef.Rd | 6 +- tests/testthat/_snaps |only tests/testthat/test-aaa-zero.R | 4 - tests/testthat/test-anyNA.R | 10 ++-- tests/testthat/test-as-mcarray.R | 6 +- tests/testthat/test-as-mcmc-list.R | 6 +- tests/testthat/test-as-mcmc.R | 4 - tests/testthat/test-as-mcmcarray.R | 2 tests/testthat/test-as-mcmcr.R | 5 +- tests/testthat/test-as-mcmcrs.R | 2 tests/testthat/test-coef.R | 26 ++--------- tests/testthat/test-collapse-chains.R | 2 tests/testthat/test-combine-dimensions.R | 6 +- tests/testthat/test-combine-samples-n.R | 12 ++--- tests/testthat/test-combine-samples.R | 2 tests/testthat/test-converged.R | 10 ---- tests/testthat/test-data-raw.R | 2 tests/testthat/test-esr.R | 20 ++++----- tests/testthat/test-ess.R | 9 +--- tests/testthat/test-estimates.R | 12 +---- tests/testthat/test-fill-all.R | 4 - tests/testthat/test-fill-na.R | 4 - tests/testthat/test-mcmc-map.R | 2 tests/testthat/test-rhat.R | 8 +-- tests/testthat/test-split-chains.R | 6 +- tests/testthat/test-summary.R | 2 35 files changed, 133 insertions(+), 147 deletions(-)
Title: Bayesian Network Structure Learning, Parameter Learning and
Inference
Description: Bayesian network structure learning, parameter learning and inference.
This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC,
Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu
Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete,
Gaussian and conditional Gaussian networks, along with many score functions and
conditional independence tests.
The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented.
Some utility functions (model comparison and manipulation, random data generation, arc
orientation testing, simple and advanced plots) are included, as well as support for
parameter estimation (maximum likelihood and Bayesian) and inference, conditional
probability queries, cross-validation, bootstrap and model averaging.
Development snapshots with the latest bugfixes are available from <https://www.bnlearn.com/>.
Author: Marco Scutari [aut, cre], Tomi Silander [ctb], Robert Ness [ctb]
Maintainer: Marco Scutari <marco.scutari@gmail.com>
Diff between bnlearn versions 4.6.1 dated 2020-09-21 and 4.7 dated 2021-09-06
bnlearn-4.6.1/bnlearn/R/ctsdag.R |only bnlearn-4.6.1/bnlearn/man/ctsdag.Rd |only bnlearn-4.7/bnlearn/Changelog | 24 - bnlearn-4.7/bnlearn/DESCRIPTION | 10 bnlearn-4.7/bnlearn/MD5 | 191 ++++---- bnlearn-4.7/bnlearn/NAMESPACE | 4 bnlearn-4.7/bnlearn/R/arc.operations.R | 2 bnlearn-4.7/bnlearn/R/arc.strength.R | 30 - bnlearn-4.7/bnlearn/R/bootstrap.R | 45 - bnlearn-4.7/bnlearn/R/data.preprocessing.R | 147 ------ bnlearn-4.7/bnlearn/R/frontend-averaging.R |only bnlearn-4.7/bnlearn/R/frontend-bn.R | 27 - bnlearn-4.7/bnlearn/R/frontend-bootstrap.R | 34 - bnlearn-4.7/bnlearn/R/frontend-data.R | 60 -- bnlearn-4.7/bnlearn/R/frontend-fit.R | 8 bnlearn-4.7/bnlearn/R/frontend-learning.R | 47 -- bnlearn-4.7/bnlearn/R/frontend-missingdata.R | 2 bnlearn-4.7/bnlearn/R/frontend-nodes.R | 2 bnlearn-4.7/bnlearn/R/frontend-packages.R | 3 bnlearn-4.7/bnlearn/R/frontend-plot.R | 7 bnlearn-4.7/bnlearn/R/frontend-print.R | 109 ++-- bnlearn-4.7/bnlearn/R/frontend-queries.R | 4 bnlearn-4.7/bnlearn/R/frontend-score.R | 8 bnlearn-4.7/bnlearn/R/frontend-simulation.R | 8 bnlearn-4.7/bnlearn/R/frontend-strength.R | 81 +-- bnlearn-4.7/bnlearn/R/globals.R | 9 bnlearn-4.7/bnlearn/R/graphviz-backend.R | 2 bnlearn-4.7/bnlearn/R/hill-climbing.R | 4 bnlearn-4.7/bnlearn/R/impute.R | 2 bnlearn-4.7/bnlearn/R/init.R | 25 - bnlearn-4.7/bnlearn/R/learning-algorithms.R | 10 bnlearn-4.7/bnlearn/R/model.averaging.R |only bnlearn-4.7/bnlearn/R/sanitization-bootstrap.R | 4 bnlearn-4.7/bnlearn/R/sanitization-data.R | 12 bnlearn-4.7/bnlearn/R/sanitization-discretization.R | 72 +-- bnlearn-4.7/bnlearn/R/sanitization-graph.R | 29 + bnlearn-4.7/bnlearn/R/sanitization-learning.R | 13 bnlearn-4.7/bnlearn/R/sanitization-scores.R | 3 bnlearn-4.7/bnlearn/R/sanitization-strength.R | 43 + bnlearn-4.7/bnlearn/R/tabu.R | 11 bnlearn-4.7/bnlearn/R/test.R | 11 bnlearn-4.7/bnlearn/R/utils-cluster.R | 8 bnlearn-4.7/bnlearn/R/utils-misc.R | 10 bnlearn-4.7/bnlearn/R/utils-print.R | 10 bnlearn-4.7/bnlearn/R/utils-tests.R | 28 - bnlearn-4.7/bnlearn/man/arc.strength.Rd | 26 - bnlearn-4.7/bnlearn/man/arcops.Rd | 16 bnlearn-4.7/bnlearn/man/bn.cv.Rd | 26 - bnlearn-4.7/bnlearn/man/bn.fit.Rd | 8 bnlearn-4.7/bnlearn/man/bn.strength-class.Rd | 2 bnlearn-4.7/bnlearn/man/bnboot.Rd | 2 bnlearn-4.7/bnlearn/man/choose.direction.Rd | 2 bnlearn-4.7/bnlearn/man/ci.test.Rd | 3 bnlearn-4.7/bnlearn/man/conditional.independence.tests.Rd | 46 + bnlearn-4.7/bnlearn/man/constraint.Rd | 24 - bnlearn-4.7/bnlearn/man/cpdag.Rd | 27 - bnlearn-4.7/bnlearn/man/cpquery.Rd | 4 bnlearn-4.7/bnlearn/man/graph.Rd | 13 bnlearn-4.7/bnlearn/man/hc.Rd | 5 bnlearn-4.7/bnlearn/man/learn.Rd | 7 bnlearn-4.7/bnlearn/man/mb.Rd | 2 bnlearn-4.7/bnlearn/man/modelstring.Rd | 2 bnlearn-4.7/bnlearn/man/network.scores.Rd | 64 +- bnlearn-4.7/bnlearn/man/plot.bn.Rd | 2 bnlearn-4.7/bnlearn/man/preprocessing.Rd | 44 - bnlearn-4.7/bnlearn/man/rbn.Rd | 9 bnlearn-4.7/bnlearn/man/score.Rd | 63 ++ bnlearn-4.7/bnlearn/man/strength.plot.Rd | 4 bnlearn-4.7/bnlearn/man/structural.em.Rd | 20 bnlearn-4.7/bnlearn/src/allsubs.test.c | 70 +- bnlearn-4.7/bnlearn/src/cg.loglikelihood.c | 4 bnlearn-4.7/bnlearn/src/common.c | 2 bnlearn-4.7/bnlearn/src/contingency.tables.c | 20 bnlearn-4.7/bnlearn/src/ctest.c | 38 - bnlearn-4.7/bnlearn/src/data.table.c | 163 ++++-- bnlearn-4.7/bnlearn/src/dedup.c | 2 bnlearn-4.7/bnlearn/src/discrete.loglikelihood.c | 48 +- bnlearn-4.7/bnlearn/src/discrete.tests.c | 44 - bnlearn-4.7/bnlearn/src/discretize.c | 329 +++++++++++--- bnlearn-4.7/bnlearn/src/enums.c | 2 bnlearn-4.7/bnlearn/src/globals.c | 2 bnlearn-4.7/bnlearn/src/include/blas.h | 2 bnlearn-4.7/bnlearn/src/include/contingency.tables.h | 15 bnlearn-4.7/bnlearn/src/include/data.structures.h | 3 bnlearn-4.7/bnlearn/src/include/data.table.h | 8 bnlearn-4.7/bnlearn/src/include/rcore.h | 2 bnlearn-4.7/bnlearn/src/include/register.h | 5 bnlearn-4.7/bnlearn/src/include/scores.h | 21 bnlearn-4.7/bnlearn/src/include/tests.h | 1 bnlearn-4.7/bnlearn/src/init.c | 5 bnlearn-4.7/bnlearn/src/is.dag.c | 15 bnlearn-4.7/bnlearn/src/linear.algebra.c | 24 - bnlearn-4.7/bnlearn/src/nml_regret.c |only bnlearn-4.7/bnlearn/src/nml_regret_table.c |only bnlearn-4.7/bnlearn/src/normalized.maximum.likelihood.c |only bnlearn-4.7/bnlearn/src/per.node.score.c | 27 + bnlearn-4.7/bnlearn/src/predict.c | 4 bnlearn-4.7/bnlearn/src/roundrobin.test.c | 105 +++- bnlearn-4.7/bnlearn/src/sanitization.c | 43 + bnlearn-4.7/bnlearn/src/wishart.posterior.c | 7 100 files changed, 1481 insertions(+), 1110 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [ctb],
Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.7.20 dated 2021-04-08 and 1.7.21 dated 2021-09-06
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 10 ++++++++++ R/sdreport.R | 1 + inst/include/TMB.hpp | 5 +++++ inst/include/start_parallel.hpp | 1 - inst/include/tiny_ad/tweedie/tweedie.cpp | 12 ++++++------ inst/include/tiny_ad/tweedie/tweedie.hpp | 17 ----------------- inst/include/tmb_core.hpp | 1 - src/utils.c | 4 ++-- 10 files changed, 37 insertions(+), 40 deletions(-)
Title: Durability of Vaccine Efficacy
Description: Implements maximum likelihood methods for
evaluating the durability of vaccine efficacy in a randomized,
placebo-controlled clinical trial with staggered enrollment of participants
and potential crossover of placebo recipients before the end of the trial.
Lin, D. Y., Zeng, D., and Gilbert, P. B. (2021)
<doi:10.1093/cid/ciab226>
and
Lin, D. Y., Gu, Y., Zeng, D., Janes, H. E., and Gilbert, P. B. (2021)
<doi:10.1093/cid/ciab630>.
Author: Danyu Lin [aut],
Yu Gu [aut],
Donglin Zeng [aut],
Shannon Holloway [aut, cre]
Maintainer: Shannon Holloway <sthollow@ncsu.edu>
Diff between DOVE versions 1.6 dated 2021-06-02 and 1.7 dated 2021-09-06
DOVE-1.6/DOVE/R/plot.doveObj.R |only DOVE-1.6/DOVE/R/print.doveObj.R |only DOVE-1.6/DOVE/inst/doc/dove-vignette.Rnw |only DOVE-1.6/DOVE/vignettes/Rplots1.pdf |only DOVE-1.6/DOVE/vignettes/Rplots2.pdf |only DOVE-1.6/DOVE/vignettes/cumulative.png |only DOVE-1.6/DOVE/vignettes/dove-vignette.Rnw |only DOVE-1.6/DOVE/vignettes/risk.png |only DOVE-1.7/DOVE/.aspell |only DOVE-1.7/DOVE/DESCRIPTION | 33 +- DOVE-1.7/DOVE/MD5 | 74 +++- DOVE-1.7/DOVE/NAMESPACE | 16 - DOVE-1.7/DOVE/NEWS | 11 DOVE-1.7/DOVE/R/CoxReg.R |only DOVE-1.7/DOVE/R/RcppExports.R |only DOVE-1.7/DOVE/R/VEcal.R |only DOVE-1.7/DOVE/R/VEplot_type1.R |only DOVE-1.7/DOVE/R/VEplot_type2.R |only DOVE-1.7/DOVE/R/dove.R | 265 +++++----------- DOVE-1.7/DOVE/R/dove2.R |only DOVE-1.7/DOVE/R/doveData.R | 6 DOVE-1.7/DOVE/R/infBeta.R |only DOVE-1.7/DOVE/R/iterations.R |only DOVE-1.7/DOVE/R/loc.R |only DOVE-1.7/DOVE/R/plot.DOVE.R |only DOVE-1.7/DOVE/R/postBeta.R |only DOVE-1.7/DOVE/R/postInterval.R |only DOVE-1.7/DOVE/R/postProcess.R |only DOVE-1.7/DOVE/R/postProcessDove.R |only DOVE-1.7/DOVE/R/postVE.R |only DOVE-1.7/DOVE/R/print.DOVE.R |only DOVE-1.7/DOVE/R/scores.R |only DOVE-1.7/DOVE/R/vaccine.R | 215 +++++++++---- DOVE-1.7/DOVE/R/vcFit.R | 477 +++--------------------------- DOVE-1.7/DOVE/R/verifyInputs.R |only DOVE-1.7/DOVE/build/vignette.rds |binary DOVE-1.7/DOVE/data/doveData.RData |binary DOVE-1.7/DOVE/inst/doc/dove-vignette.R | 153 ++++++--- DOVE-1.7/DOVE/inst/doc/dove-vignette.Rmd |only DOVE-1.7/DOVE/inst/doc/dove-vignette.pdf |binary DOVE-1.7/DOVE/man/dove.Rd | 58 ++- DOVE-1.7/DOVE/man/dove2.Rd |only DOVE-1.7/DOVE/man/doveData.Rd | 6 DOVE-1.7/DOVE/man/plot.Rd |only DOVE-1.7/DOVE/man/print.Rd |only DOVE-1.7/DOVE/man/vaccine.Rd | 24 + DOVE-1.7/DOVE/src |only DOVE-1.7/DOVE/vignettes/dove-vignette.Rmd |only DOVE-1.7/DOVE/vignettes/dove1a.pdf |only DOVE-1.7/DOVE/vignettes/dove1b.pdf |only DOVE-1.7/DOVE/vignettes/dove2a.pdf |only DOVE-1.7/DOVE/vignettes/dove2b.pdf |only DOVE-1.7/DOVE/vignettes/doveResult.rds |only 53 files changed, 553 insertions(+), 785 deletions(-)
Title: Multiple Imputation by Chained Equations with Random Forests
Description: Multiple Imputation has been shown to
be a flexible method to impute missing values by
Van Buuren (2007) <doi:10.1177/0962280206074463>.
Expanding on this, random forests have been shown
to be an accurate model by Stekhoven and Buhlmann
<arXiv:1105.0828> to impute missing values in datasets.
They have the added benefits of returning out of bag
error and variable importance estimates, as well as
being simple to run in parallel.
Author: Sam Wilson [aut, cre]
Maintainer: Sam Wilson <samwilson303@gmail.com>
Diff between miceRanger versions 1.4.0 dated 2021-05-13 and 1.5.0 dated 2021-09-06
DESCRIPTION | 6 - MD5 | 12 +- NEWS.md | 3 R/impute.R | 5 inst/doc/diagnosticPlotting.html | 204 +------------------------------------- inst/doc/miceAlgorithm.html | 204 +------------------------------------- inst/doc/usingMiceRanger.html | 206 ++------------------------------------- 7 files changed, 47 insertions(+), 593 deletions(-)
Title: Useful Wrappers Around Commonly Used Functions
Description: The main functionalities of 'wrappedtools' are:
adding backticks to variable names; rounding to desired precision
with special case for p-values;
selecting columns based on pattern and storing their position, name,
and backticked name; computing and formatting of descriptive statistics
(e.g. mean±SD), comparing groups and creating publication-ready tables with
descriptive statistics and p-values; creating specialized plots for
correlation matrices. Functions were mainly written for my own daily work or
teaching, but may be of use to others as well.
Author: Andreas Busjahn [cre, aut] (<https://orcid.org/0000-0001-9650-6919>)
Maintainer: Andreas Busjahn <andreas@busjahn.net>
Diff between wrappedtools versions 0.7.8 dated 2021-05-08 and 0.7.9 dated 2021-09-06
DESCRIPTION | 15 MD5 | 39 + NAMESPACE | 2 NEWS.md | 17 R/basefunctions.R | 61 +-- R/data.R |only R/descriptives.R | 880 ++++++++++++++++++++++----------------------- R/pkgstart.R | 3 R/tests.R | 399 ++++++++++---------- README.md | 14 build/vignette.rds |binary data |only inst/doc/wrappedtools.R | 2 inst/doc/wrappedtools.Rmd | 63 +-- inst/doc/wrappedtools.html | 142 +++---- man/FindVars.Rd | 8 man/compare2numvars.Rd | 6 man/cortestR.Rd | 2 man/faketrial.Rd |only man/formatP.Rd | 2 man/median_quart.Rd | 2 vignettes/wrappedtools.Rmd | 63 +-- 22 files changed, 891 insertions(+), 829 deletions(-)
Title: Create, Manipulate and Query Parameter Terms
Description: Creates, manipulates, queries and repairs vectors of
parameter terms. Parameter terms are the labels used to reference
values in vectors, matrices and arrays. They represent the names in
coefficient tables and the column names in 'mcmc' and 'mcmc.list'
objects.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Kirill Müller [aut] (<https://orcid.org/0000-0002-1416-3412>),
Ayla Pearson [ctb] (<https://orcid.org/0000-0001-7388-1222>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between term versions 0.3.1 dated 2021-02-06 and 0.3.2 dated 2021-09-06
DESCRIPTION | 17 ++++---- MD5 | 76 ++++++++++++++++++------------------- NEWS.md | 6 ++ R/as-term-rcrd.R | 2 R/consistent-term.R | 4 + R/internal.R | 1 R/new-term-rcrd.R | 4 - R/new-term.R | 4 - R/npdims.R | 2 R/nterms.R | 4 - R/pars-terms.R | 4 + R/pars.R | 6 ++ R/scalar-term.R | 4 + R/term-rcrd.R | 5 +- R/term.R | 5 +- R/tindex.R | 3 - R/valid-term.R | 7 ++- R/vld.R | 2 build/term.pdf |binary man/as_term.Rd | 2 man/as_term_rcrd.Rd | 2 man/deprecated.Rd | 14 +++--- man/new_term.Rd | 5 +- man/new_term_rcrd.Rd | 5 +- man/npdims.term.Rd | 2 man/nterms.term.Rd | 2 man/nterms.term_rcrd.Rd | 2 man/pars.character.Rd | 9 +++- man/pars.default.Rd | 9 +++- man/pars.term.Rd | 4 + man/pars.term_rcrd.Rd | 4 + man/pars_terms.Rd | 2 man/term.Rd | 9 +++- man/term_rcrd.Rd | 9 +++- man/tindex.Rd | 9 +++- man/valid_term.Rd | 6 ++ man/vld_term.Rd | 7 +++ tests/testthat/test-as-term-rcrd.R | 2 tests/testthat/test-as-term.R | 5 +- 39 files changed, 175 insertions(+), 90 deletions(-)
Title: The Self-Controlled Case Series Method
Description: Various self-controlled case series models used to investigate
associations between time-varying exposures such as vaccines or
other drugs or non drug exposures and an adverse event can be
fitted. Detailed information on the self-controlled case series
method and its extensions with more examples can be found in
Farrington, P., Whitaker, H., and Ghebremichael Weldeselassie, Y.
(2018, ISBN: 978-1-4987-8159-6. Self-controlled Case Series studies:
A modelling Guide with R. Boca Raton: Chapman & Hall/CRC Press)
and <https://sccs-studies.info/index.html>.
Author: Yonas Ghebremichael Weldeselassie, Heather Whitaker, Paddy Farrington
Maintainer: "Yonas Ghebremichael-Weldeselassie" <y.weldeselassie@warwick.ac.uk>
Diff between SCCS versions 1.3 dated 2021-06-23 and 1.4 dated 2021-09-06
SCCS-1.3/SCCS/data/addat.txt |only SCCS-1.3/SCCS/data/adidat.txt |only SCCS-1.3/SCCS/data/amdat.txt |only SCCS-1.3/SCCS/data/apdat.txt |only SCCS-1.3/SCCS/data/autdat.txt |only SCCS-1.3/SCCS/data/bpdat.txt |only SCCS-1.3/SCCS/data/bupdat.txt |only SCCS-1.3/SCCS/data/condat.txt |only SCCS-1.3/SCCS/data/dtpdat.txt |only SCCS-1.3/SCCS/data/febdat.txt |only SCCS-1.3/SCCS/data/gbsdat.txt |only SCCS-1.3/SCCS/data/gidat.txt |only SCCS-1.3/SCCS/data/hibdat.txt |only SCCS-1.3/SCCS/data/hipdat.txt |only SCCS-1.3/SCCS/data/intdat.txt |only SCCS-1.3/SCCS/data/itpdat.txt |only SCCS-1.3/SCCS/data/midat.txt |only SCCS-1.3/SCCS/data/nrtdat.txt |only SCCS-1.3/SCCS/data/opvdat.txt |only SCCS-1.3/SCCS/data/pmdat.txt |only SCCS-1.3/SCCS/data/rotdat.txt |only SCCS-1.3/SCCS/data/rsvdat.txt |only SCCS-1.3/SCCS/data/siddat.txt |only SCCS-1.4/SCCS/DESCRIPTION | 10 SCCS-1.4/SCCS/MD5 | 62 - SCCS-1.4/SCCS/NAMESPACE | 40 SCCS-1.4/SCCS/R/eventdepenexp.R | 769 ++++++++---------- SCCS-1.4/SCCS/R/eventdepenobs.R | 1536 ++++++++++++++++++------------------ SCCS-1.4/SCCS/R/formatdata.R | 850 ++++++++----------- SCCS-1.4/SCCS/R/summary.sccs.R | 71 - SCCS-1.4/SCCS/data/addat.txt.gz |only SCCS-1.4/SCCS/data/adidat.txt.gz |only SCCS-1.4/SCCS/data/amdat.txt.gz |only SCCS-1.4/SCCS/data/apdat.txt.gz |only SCCS-1.4/SCCS/data/autdat.txt.gz |only SCCS-1.4/SCCS/data/bpdat.txt.gz |only SCCS-1.4/SCCS/data/bupdat.txt.gz |only SCCS-1.4/SCCS/data/condat.txt.gz |only SCCS-1.4/SCCS/data/dtpdat.txt.gz |only SCCS-1.4/SCCS/data/febdat.txt.gz |only SCCS-1.4/SCCS/data/gbsdat.txt.gz |only SCCS-1.4/SCCS/data/gidat.txt.gz |only SCCS-1.4/SCCS/data/hibdat.txt.gz |only SCCS-1.4/SCCS/data/hipdat.txt.gz |only SCCS-1.4/SCCS/data/intdat.txt.gz |only SCCS-1.4/SCCS/data/itpdat.txt.gz |only SCCS-1.4/SCCS/data/midat.txt.gz |only SCCS-1.4/SCCS/data/nrtdat.txt.gz |only SCCS-1.4/SCCS/data/opvdat.txt.gz |only SCCS-1.4/SCCS/data/pmdat.txt.gz |only SCCS-1.4/SCCS/data/rotdat.txt.gz |only SCCS-1.4/SCCS/data/rsvdat.txt.gz |only SCCS-1.4/SCCS/data/siddat.txt.gz |only SCCS-1.4/SCCS/man/smoothexposccs.Rd | 222 ++--- SCCS-1.4/SCCS/man/standardsccs.Rd | 504 +++++------ 55 files changed, 1937 insertions(+), 2127 deletions(-)
Title: Open GenBank Files
Description: Opens complete record(s) with .gb extension from the NCBI/GenBank Nucleotide database and returns a list containing shaped record(s). These kind of files contains detailed records of DNA samples (locus, organism, type of sequence, source of the sequence...). An example of record can be found at <https://www.ncbi.nlm.nih.gov/nuccore/HE799070>.
Author: Robin Mercier [aut, cre]
Maintainer: Robin Mercier <robin.largon.mercier@hotmail.fr>
Diff between read.gb versions 2.0.1 dated 2020-05-14 and 2.2 dated 2021-09-06
read.gb-2.0.1/read.gb/R/sysdata.rda |only read.gb-2.2/read.gb/DESCRIPTION | 54 ++-- read.gb-2.2/read.gb/MD5 | 125 +++++------ read.gb-2.2/read.gb/NAMESPACE | 9 read.gb-2.2/read.gb/R/CDS.F.R | 5 read.gb-2.2/read.gb/R/C_region.F.R | 3 read.gb-2.2/read.gb/R/DNA.treatment.R | 5 read.gb-2.2/read.gb/R/D_loop.F.R | 3 read.gb-2.2/read.gb/R/D_segment.F.R | 3 read.gb-2.2/read.gb/R/F_UTR.F.R | 5 read.gb-2.2/read.gb/R/Feature.sep.R | 338 +----------------------------- read.gb-2.2/read.gb/R/J_segment.F.R | 3 read.gb-2.2/read.gb/R/N_region.F.R | 3 read.gb-2.2/read.gb/R/Reference.sep.R | 12 - read.gb-2.2/read.gb/R/Reorganize.report.R | 40 ++- read.gb-2.2/read.gb/R/STS.F.R | 3 read.gb-2.2/read.gb/R/S_region.F.R | 3 read.gb-2.2/read.gb/R/T_UTR.F.R | 5 read.gb-2.2/read.gb/R/V_region.F.R | 3 read.gb-2.2/read.gb/R/V_segment.F.R | 3 read.gb-2.2/read.gb/R/assembly_gap.F.R | 3 read.gb-2.2/read.gb/R/centromere.F.R | 3 read.gb-2.2/read.gb/R/exon.F.R | 3 read.gb-2.2/read.gb/R/extract.gb.R | 111 ++++----- read.gb-2.2/read.gb/R/gap.F.R | 3 read.gb-2.2/read.gb/R/gene.F.R | 84 ++++--- read.gb-2.2/read.gb/R/iDNA.F.R | 3 read.gb-2.2/read.gb/R/intron.F.R | 3 read.gb-2.2/read.gb/R/mRNA.F.R | 3 read.gb-2.2/read.gb/R/mat_peptide.F.R | 3 read.gb-2.2/read.gb/R/misc_RNA.F.R | 3 read.gb-2.2/read.gb/R/misc_binding.F.R | 3 read.gb-2.2/read.gb/R/misc_difference.F.R | 3 read.gb-2.2/read.gb/R/misc_feature.F.R | 3 read.gb-2.2/read.gb/R/misc_recomb.F.R | 3 read.gb-2.2/read.gb/R/misc_structure.F.R | 3 read.gb-2.2/read.gb/R/mobile_element.F.R | 3 read.gb-2.2/read.gb/R/modified_base.F.R | 3 read.gb-2.2/read.gb/R/ncRNA.F.R | 3 read.gb-2.2/read.gb/R/old_sequence.F.R | 3 read.gb-2.2/read.gb/R/operon.F.R | 3 read.gb-2.2/read.gb/R/oriT.F.R | 3 read.gb-2.2/read.gb/R/polyA_site.F.R | 3 read.gb-2.2/read.gb/R/precursor_RNA.F.R | 3 read.gb-2.2/read.gb/R/prim_transcript.F.R | 3 read.gb-2.2/read.gb/R/primer_bind.F.R | 3 read.gb-2.2/read.gb/R/propeptide.F.R | 3 read.gb-2.2/read.gb/R/protein_bind.F.R | 3 read.gb-2.2/read.gb/R/rRNA.F.R | 3 read.gb-2.2/read.gb/R/read.gb.R | 139 ++++++------ read.gb-2.2/read.gb/R/regulatory.F.R | 3 read.gb-2.2/read.gb/R/rep_origin.F.R | 3 read.gb-2.2/read.gb/R/repeat_region.F.R | 3 read.gb-2.2/read.gb/R/sig_peptide.F.R | 3 read.gb-2.2/read.gb/R/source.F.R | 93 ++++---- read.gb-2.2/read.gb/R/stem_loop.F.R | 3 read.gb-2.2/read.gb/R/tRNA.F.R | 3 read.gb-2.2/read.gb/R/telomere.F.R | 3 read.gb-2.2/read.gb/R/tmRNA.F.R | 3 read.gb-2.2/read.gb/R/transit_peptide.F.R | 3 read.gb-2.2/read.gb/R/unsure.F.R | 3 read.gb-2.2/read.gb/R/variation.F.R | 3 read.gb-2.2/read.gb/man/extract.gb.Rd | 2 read.gb-2.2/read.gb/man/read.gb.Rd | 9 64 files changed, 492 insertions(+), 685 deletions(-)
Title: Transformation Trees and Forests
Description: Recursive partytioning of transformation models with
corresponding random forest for conditional transformation models
as described in 'Transformation Forests' (Hothorn and Zeileis, 2021, <doi:10.1080/10618600.2021.1872581>)
and 'Top-Down Transformation Choice' (Hothorn, 2018, <DOI:10.1177/1471082X17748081>).
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between trtf versions 0.3-7 dated 2020-04-22 and 0.3-8 dated 2021-09-06
DESCRIPTION | 12 ++++++------ MD5 | 13 +++++++------ R/methods.R | 26 +++++++------------------- build |only inst/NEWS.Rd | 8 ++++++++ inst/sim/artificial_simfun.R | 2 +- man/traforest.Rd | 10 ++++++---- man/trafotree.Rd | 11 +++++++---- 8 files changed, 42 insertions(+), 40 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] (Methods for mutating vertical tabs &
updateMultiInput),
Wil Davis [ctb] (numericRangeInput function),
Spencer Matthews [ctb] (autoNumeric methods),
JavaScript and CSS libraries authors [ctb, cph] (All authors are listed
in LICENSE.md)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.6.0 dated 2021-03-15 and 0.6.1 dated 2021-09-06
shinyWidgets-0.6.0/shinyWidgets/R/input-favbutton.R |only shinyWidgets-0.6.0/shinyWidgets/tests/testthat/test-textInputAddon.R |only shinyWidgets-0.6.1/shinyWidgets/DESCRIPTION | 6 shinyWidgets-0.6.1/shinyWidgets/MD5 | 862 +- shinyWidgets-0.6.1/shinyWidgets/NAMESPACE | 350 - shinyWidgets-0.6.1/shinyWidgets/NEWS.md | 14 shinyWidgets-0.6.1/shinyWidgets/R/actionBttn.R | 360 - shinyWidgets-0.6.1/shinyWidgets/R/addSpinner.R | 504 - shinyWidgets-0.6.1/shinyWidgets/R/bootstrap-utils.R | 200 shinyWidgets-0.6.1/shinyWidgets/R/chooseSliderSkin.R | 490 - shinyWidgets-0.6.1/shinyWidgets/R/color-pickr.R | 324 shinyWidgets-0.6.1/shinyWidgets/R/demos.R | 136 shinyWidgets-0.6.1/shinyWidgets/R/dependencies.R | 862 +- shinyWidgets-0.6.1/shinyWidgets/R/drop-menu.R | 482 - shinyWidgets-0.6.1/shinyWidgets/R/execute_safely.R | 112 shinyWidgets-0.6.1/shinyWidgets/R/input-actiongroupbuttons.R | 192 shinyWidgets-0.6.1/shinyWidgets/R/input-airDatepicker.R | 788 +- shinyWidgets-0.6.1/shinyWidgets/R/input-autonumeric.R | 1221 +-- shinyWidgets-0.6.1/shinyWidgets/R/input-awesomecheckbox.R | 708 +- shinyWidgets-0.6.1/shinyWidgets/R/input-awesomeradio.R | 512 - shinyWidgets-0.6.1/shinyWidgets/R/input-checkboxgroupbuttons.R | 688 - shinyWidgets-0.6.1/shinyWidgets/R/input-circlebutton.R | 152 shinyWidgets-0.6.1/shinyWidgets/R/input-colorselector.R | 356 - shinyWidgets-0.6.1/shinyWidgets/R/input-dropdown.R | 486 - shinyWidgets-0.6.1/shinyWidgets/R/input-icon.R | 592 - shinyWidgets-0.6.1/shinyWidgets/R/input-knob.R | 430 - shinyWidgets-0.6.1/shinyWidgets/R/input-materialswitch.R | 182 shinyWidgets-0.6.1/shinyWidgets/R/input-multi.R | 438 - shinyWidgets-0.6.1/shinyWidgets/R/input-noUiSlider.R | 556 - shinyWidgets-0.6.1/shinyWidgets/R/input-numericRange.R | 217 shinyWidgets-0.6.1/shinyWidgets/R/input-pretty.R | 1472 ++-- shinyWidgets-0.6.1/shinyWidgets/R/input-radiogroupbuttons.R | 620 - shinyWidgets-0.6.1/shinyWidgets/R/input-search.R | 336 shinyWidgets-0.6.1/shinyWidgets/R/input-selectpicker.R | 645 - shinyWidgets-0.6.1/shinyWidgets/R/input-sliderText.R | 502 - shinyWidgets-0.6.1/shinyWidgets/R/input-spectrum.R | 340 shinyWidgets-0.6.1/shinyWidgets/R/input-switch.R | 658 - shinyWidgets-0.6.1/shinyWidgets/R/input-textaddon.R | 100 shinyWidgets-0.6.1/shinyWidgets/R/module-pickerGroup.R | 602 - shinyWidgets-0.6.1/shinyWidgets/R/module-selectizeGroup.R | 524 - shinyWidgets-0.6.1/shinyWidgets/R/module-utils.R | 108 shinyWidgets-0.6.1/shinyWidgets/R/onLoad.R | 93 shinyWidgets-0.6.1/shinyWidgets/R/pickerOptions.R | 236 shinyWidgets-0.6.1/shinyWidgets/R/progressBars.R | 378 - shinyWidgets-0.6.1/shinyWidgets/R/set-background.R | 422 - shinyWidgets-0.6.1/shinyWidgets/R/setShadow.R | 226 shinyWidgets-0.6.1/shinyWidgets/R/setSliderColor.R | 167 shinyWidgets-0.6.1/shinyWidgets/R/shinyWidgets.R | 24 shinyWidgets-0.6.1/shinyWidgets/R/shinyWidgetsGallery.R | 44 shinyWidgets-0.6.1/shinyWidgets/R/stati-card.R | 168 shinyWidgets-0.6.1/shinyWidgets/R/sw-dropdown.R | 484 - shinyWidgets-0.6.1/shinyWidgets/R/sweetalert.R | 1250 +-- shinyWidgets-0.6.1/shinyWidgets/R/useArgonDash.R | 336 shinyWidgets-0.6.1/shinyWidgets/R/useBs4Dash.R | 266 shinyWidgets-0.6.1/shinyWidgets/R/useShinydashboard.R | 220 shinyWidgets-0.6.1/shinyWidgets/R/useShinydashboardPlus.R | 344 shinyWidgets-0.6.1/shinyWidgets/R/useTablerDash.R | 50 shinyWidgets-0.6.1/shinyWidgets/R/utils.R | 368 - shinyWidgets-0.6.1/shinyWidgets/R/vertical-tab.R | 670 - shinyWidgets-0.6.1/shinyWidgets/README.md | 478 - shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker/datepicker-bindings.js | 480 - shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker/datepicker.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker/i18n/datepicker.it.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker/i18n/datepicker.ja.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker/i18n/datepicker.ru.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker/i18n/datepicker.tr.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/LICENSE.md | 42 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/airdatepicker-custom.css | 54 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/datepicker-bindings.js | 621 - shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/datepicker.min.js | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.cs.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.da.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.de.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.en.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.es.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.fi.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.fr.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.hu.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.it.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.ja.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.nl.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.pl.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.pt-BR.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.pt.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.ro.js | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.sk.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/air-datepicker2/i18n/datepicker.zh.js | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/animate/LICENSE | 42 shinyWidgets-0.6.1/shinyWidgets/inst/assets/animate/animate-config.json | 242 shinyWidgets-0.6.1/shinyWidgets/inst/assets/animate/animate.min.css | 20 shinyWidgets-0.6.1/shinyWidgets/inst/assets/autonumeric/autoNumeric.min.js | 12 shinyWidgets-0.6.1/shinyWidgets/inst/assets/autonumeric/autonumeric-bindings.js | 185 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/LICENSE | 40 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/_mixins.scss | 80 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/_variables.scss | 1722 ++-- shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/awesome-bootstrap-checkbox.min.css | 3 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/awesome-bootstrap-checkbox.scss | 563 - shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/awesomeCheckbox-bindings.js | 188 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/awesomeRadio-bindings.js | 176 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/compile-css.R | 104 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_alerts.scss | 30 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_background-variant.scss | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_border-radius.scss | 36 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_buttons.scss | 122 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_center-block.scss | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_clearfix.scss | 44 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_forms.scss | 176 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_gradients.scss | 112 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_grid-framework.scss | 162 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_grid.scss | 244 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_hide-text.scss | 42 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_image.scss | 56 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_labels.scss | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_list-group.scss | 64 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_nav-divider.scss | 20 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_nav-vertical-align.scss | 18 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_opacity.scss | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_pagination.scss | 48 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_panels.scss | 48 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_progress-bar.scss | 20 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_reset-filter.scss | 16 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_reset-text.scss | 36 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_resize.scss | 12 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_responsive-visibility.scss | 34 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_size.scss | 20 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_tab-focus.scss | 18 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_table-row.scss | 56 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_text-emphasis.scss | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_text-overflow.scss | 16 shinyWidgets-0.6.1/shinyWidgets/inst/assets/awesome-bootstrap-checkbox/mixins/_vendor-prefixes.scss | 444 - shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/LICENSE | 42 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/css/bootstrap-select.min.css | 10 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/bootstrap-select.min.js | 16 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-am_ET.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-am_ET.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ar_AR.js | 100 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ar_AR.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-bg_BG.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-bg_BG.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-cs_CZ.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-cs_CZ.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-da_DK.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-da_DK.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-de_DE.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-de_DE.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-en_US.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-en_US.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-es_CL.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-es_CL.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-es_ES.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-es_ES.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-et_EE.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-et_EE.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-eu.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-eu.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-fa_IR.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-fa_IR.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-fi_FI.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-fi_FI.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-fr_FR.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-fr_FR.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-hr_HR.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-hr_HR.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-hu_HU.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-hu_HU.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-id_ID.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-id_ID.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-it_IT.js | 80 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-it_IT.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ja_JP.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ja_JP.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-kh_KM.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-kh_KM.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ko_KR.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ko_KR.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-lt_LT.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-lt_LT.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-lv_LV.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-lv_LV.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-nb_NO.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-nb_NO.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-nl_NL.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-nl_NL.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-pl_PL.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-pl_PL.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-pt_BR.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-pt_BR.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-pt_PT.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-pt_PT.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ro_RO.js | 78 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ro_RO.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ru_RU.js | 78 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ru_RU.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-sk_SK.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-sk_SK.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-sl_SI.js | 86 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-sl_SI.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-sr_SP.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-sr_SP.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-sv_SE.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-sv_SE.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-th_TH.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-th_TH.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-tr_TR.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-tr_TR.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ua_UA.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-ua_UA.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-vi_VN.js | 90 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-vi_VN.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-zh_CN.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-zh_CN.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-zh_TW.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-select/js/i18n/defaults-zh_TW.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-switch/LICENSE.txt | 42 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-switch/bootstrap-switch-3.3.4/bootstrap-switch.min.css | 18 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-switch/bootstrap-switch-3.3.4/bootstrap-switch.min.js | 20 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bootstrap-switch/switch-bindings.js | 132 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bounty/bounty-wrapper.js | 186 shinyWidgets-0.6.1/shinyWidgets/inst/assets/bttn/bttn.min.css | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/buttons-group/checkboxGroupButtons-bindings.js | 320 shinyWidgets-0.6.1/shinyWidgets/inst/assets/buttons-group/checkboxGroupButtons.css | 94 shinyWidgets-0.6.1/shinyWidgets/inst/assets/buttons-group/radioGroupButtons-bindings.js | 266 shinyWidgets-0.6.1/shinyWidgets/inst/assets/buttons-group/radioGroupButtons.css | 200 shinyWidgets-0.6.1/shinyWidgets/inst/assets/circleButton/circle-button.css | 168 shinyWidgets-0.6.1/shinyWidgets/inst/assets/colorSelector/sw-color-selector.css | 70 shinyWidgets-0.6.1/shinyWidgets/inst/assets/dropdown/dropdown-click.js | 194 shinyWidgets-0.6.1/shinyWidgets/inst/assets/favButton/fav-button-14.js | 380 - shinyWidgets-0.6.1/shinyWidgets/inst/assets/favButton/fav-button-16.js | 262 shinyWidgets-0.6.1/shinyWidgets/inst/assets/favButton/fav-button-5.js | 208 shinyWidgets-0.6.1/shinyWidgets/inst/assets/favButton/fav-button-8.js | 312 shinyWidgets-0.6.1/shinyWidgets/inst/assets/favButton/fav-button.css | 286 shinyWidgets-0.6.1/shinyWidgets/inst/assets/favButton/fav-icons.css | 104 shinyWidgets-0.6.1/shinyWidgets/inst/assets/favButton/mo.min.js | 26 shinyWidgets-0.6.1/shinyWidgets/inst/assets/ion-rangeslider/custom-skin.js | 26 shinyWidgets-0.6.1/shinyWidgets/inst/assets/ion-rangeslider/jquery.initialize.min.js | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/jquery-knob/jquery.knob.min.js | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/jquery-knob/knob-bindings.js | 410 - shinyWidgets-0.6.1/shinyWidgets/inst/assets/material-switch/material-switch.css | 96 shinyWidgets-0.6.1/shinyWidgets/inst/assets/modules/styles-modules.css | 44 shinyWidgets-0.6.1/shinyWidgets/inst/assets/multi/multi-bindings.js | 166 shinyWidgets-0.6.1/shinyWidgets/inst/assets/multi/multi-shiny.css | 12 shinyWidgets-0.6.1/shinyWidgets/inst/assets/nouislider/nouislider-bindings.js | 264 shinyWidgets-0.6.1/shinyWidgets/inst/assets/numeric/numeric-icon-bindings.js | 282 shinyWidgets-0.6.1/shinyWidgets/inst/assets/numeric/text-icon-bindings.js | 150 shinyWidgets-0.6.1/shinyWidgets/inst/assets/numericRange/js/numericRange-bindings.js | 113 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pickr-1.6.0/js/pickr.min.js | 4 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pickr-1.6.0/pickr-bindings.js | 342 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pickr/js/pickr.min.js | 8 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pickr/pickr-bindings.js | 324 shinyWidgets-0.6.1/shinyWidgets/inst/assets/popper/popper.min.js | 10 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/pretty-checkbox.scss | 52 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/_core.scss | 168 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/_variables.scss | 78 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/default/_fill.scss | 12 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/default/_outline.scss | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/default/_thick.scss | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/font-icon/_general.scss | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/image/_general.scss | 40 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/svg/_general.scss | 64 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/switch/_fill.scss | 28 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/switch/_general.scss | 106 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/elements/switch/_slim.scss | 30 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/essentials/_keyframes.scss | 202 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_animation.scss | 176 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_bigger.scss | 26 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_colors.scss | 104 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_curve.scss | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_disabled.scss | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_locked.scss | 10 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_plain.scss | 22 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_print.scss | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_round.scss | 34 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/extras/_toggle.scss | 62 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/states/_focus.scss | 12 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/states/_hover.scss | 24 shinyWidgets-0.6.1/shinyWidgets/inst/assets/pretty-checkbox/scss/states/_indeterminate.scss | 26 shinyWidgets-0.6.1/shinyWidgets/inst/assets/progress-bars/progress-bars-bindings.js | 76 shinyWidgets-0.6.1/shinyWidgets/inst/assets/search-input/search-bindings.js | 156 shinyWidgets-0.6.1/shinyWidgets/inst/assets/shinyWidgets-bindings.min.js | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/shinyWidgets.css | 611 - shinyWidgets-0.6.1/shinyWidgets/inst/assets/shinyWidgets.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sliderText/sliderTextInput-bindings.js | 276 shinyWidgets-0.6.1/shinyWidgets/inst/assets/spectrum/spectrum-bindings.js | 150 shinyWidgets-0.6.1/shinyWidgets/inst/assets/spectrum/spectrum.css | 946 +- shinyWidgets-0.6.1/shinyWidgets/inst/assets/spectrum/spectrum.min.css | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/spectrum/spectrum.min.js | 14 shinyWidgets-0.6.1/shinyWidgets/inst/assets/spectrum/sw-spectrum.css | 96 shinyWidgets-0.6.1/shinyWidgets/inst/assets/spinner/spin.css | 1464 ++-- shinyWidgets-0.6.1/shinyWidgets/inst/assets/stati/stati.css | 136 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sw-dropdown/sw-dropdown.css | 112 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sw-dropdown/sw-dropdown.js | 290 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/LICENSE.txt | 44 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/css/bootstrap-4.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/css/borderless.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/css/bulma.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/css/dark.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/css/default.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/css/material-ui.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/css/minimal.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/js/promise.min.js | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/js/sweetalert2.min.js | 3 shinyWidgets-0.6.1/shinyWidgets/inst/assets/sweetalert2/sweetalert-bindings.js | 215 shinyWidgets-0.6.1/shinyWidgets/inst/assets/tippy/dist/animations.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/tippy/dist/themes.min.css | 2 shinyWidgets-0.6.1/shinyWidgets/inst/assets/tippy/dist/tippy-bundle.iife.min.js | 4 shinyWidgets-0.6.1/shinyWidgets/inst/assets/tippy/drop-menu-bindings.js | 156 shinyWidgets-0.6.1/shinyWidgets/inst/assets/tools.R | 138 shinyWidgets-0.6.1/shinyWidgets/inst/assets/uglify.R | 128 shinyWidgets-0.6.1/shinyWidgets/inst/assets/vertical-tab-panel/vertical-tab-panel-bindings.js | 92 shinyWidgets-0.6.1/shinyWidgets/inst/assets/vertical-tab-panel/vertical-tab-panel.css | 178 shinyWidgets-0.6.1/shinyWidgets/inst/assets/vertical-tab-panel/vertical-tab-panel.js | 52 shinyWidgets-0.6.1/shinyWidgets/inst/examples/airDatepicker/datepicker/app.R | 254 shinyWidgets-0.6.1/shinyWidgets/inst/examples/airDatepicker/months/app.R | 196 shinyWidgets-0.6.1/shinyWidgets/inst/examples/airDatepicker/timepicker/app.R | 176 shinyWidgets-0.6.1/shinyWidgets/inst/examples/airDatepicker/update/app.R | 206 shinyWidgets-0.6.1/shinyWidgets/inst/examples/airDatepicker/years/app.R | 176 shinyWidgets-0.6.1/shinyWidgets/inst/examples/bookmarking/test-sw.R | 96 shinyWidgets-0.6.1/shinyWidgets/inst/examples/bookmarking/test-switchInput.R | 44 shinyWidgets-0.6.1/shinyWidgets/inst/examples/bootstrapSwitch/server.R | 94 shinyWidgets-0.6.1/shinyWidgets/inst/examples/bootstrapSwitch/ui.R | 214 shinyWidgets-0.6.1/shinyWidgets/inst/examples/checkboxGroupButtons/server.R | 98 shinyWidgets-0.6.1/shinyWidgets/inst/examples/checkboxGroupButtons/ui.R | 292 shinyWidgets-0.6.1/shinyWidgets/inst/examples/colorSelector/example.R | 210 shinyWidgets-0.6.1/shinyWidgets/inst/examples/dropdown/ex-color-dropdown.R | 126 shinyWidgets-0.6.1/shinyWidgets/inst/examples/dropdown/ex-renderUI.R | 92 shinyWidgets-0.6.1/shinyWidgets/inst/examples/dropdown/ex-sw-dropdown.R | 78 shinyWidgets-0.6.1/shinyWidgets/inst/examples/examples-spin.R | 98 shinyWidgets-0.6.1/shinyWidgets/inst/examples/jQueryKnob/app.R | 154 shinyWidgets-0.6.1/shinyWidgets/inst/examples/multi/test-update.R | 130 shinyWidgets-0.6.1/shinyWidgets/inst/examples/nouislider/behaviour/app.R | 168 shinyWidgets-0.6.1/shinyWidgets/inst/examples/nouislider/color/app.R | 212 shinyWidgets-0.6.1/shinyWidgets/inst/examples/nouislider/format/app.R | 178 shinyWidgets-0.6.1/shinyWidgets/inst/examples/nouislider/more/app.R | 290 shinyWidgets-0.6.1/shinyWidgets/inst/examples/nouislider/update/app.R | 278 shinyWidgets-0.6.1/shinyWidgets/inst/examples/numericRange/app.R | 42 shinyWidgets-0.6.1/shinyWidgets/inst/examples/pretty/pretty_readme.R | 136 shinyWidgets-0.6.1/shinyWidgets/inst/examples/progressBars/app.R | 212 shinyWidgets-0.6.1/shinyWidgets/inst/examples/radioGroupButtons/server.R | 98 shinyWidgets-0.6.1/shinyWidgets/inst/examples/radioGroupButtons/ui.R | 300 shinyWidgets-0.6.1/shinyWidgets/inst/examples/selectPicker/server.R | 90 shinyWidgets-0.6.1/shinyWidgets/inst/examples/selectPicker/ui.R | 460 - shinyWidgets-0.6.1/shinyWidgets/inst/examples/shinyWidgets/code_dropdown.R | 124 shinyWidgets-0.6.1/shinyWidgets/inst/examples/shinyWidgets/code_dropdownButton.R | 116 shinyWidgets-0.6.1/shinyWidgets/inst/examples/shinyWidgets/code_sa.R | 116 shinyWidgets-0.6.1/shinyWidgets/inst/examples/shinyWidgets/global.R | 270 shinyWidgets-0.6.1/shinyWidgets/inst/examples/shinyWidgets/server.R | 732 +- shinyWidgets-0.6.1/shinyWidgets/inst/examples/shinyWidgets/ui.R | 3466 +++++----- shinyWidgets-0.6.1/shinyWidgets/inst/examples/update_switchInput.R | 298 shinyWidgets-0.6.1/shinyWidgets/man/airDatepicker.Rd | 406 - shinyWidgets-0.6.1/shinyWidgets/man/animations.Rd | 38 shinyWidgets-0.6.1/shinyWidgets/man/autonumericInput.Rd | 577 - shinyWidgets-0.6.1/shinyWidgets/man/bootstrap-utils.Rd | 370 - shinyWidgets-0.6.1/shinyWidgets/man/checkboxGroupButtons.Rd | 214 shinyWidgets-0.6.1/shinyWidgets/man/closeSweetAlert.Rd | 30 shinyWidgets-0.6.1/shinyWidgets/man/colorPickr.Rd | 512 - shinyWidgets-0.6.1/shinyWidgets/man/downloadBttn.Rd | 140 shinyWidgets-0.6.1/shinyWidgets/man/dropMenu.Rd | 250 shinyWidgets-0.6.1/shinyWidgets/man/dropMenuOptions.Rd | 52 shinyWidgets-0.6.1/shinyWidgets/man/execute_safely.Rd | 146 shinyWidgets-0.6.1/shinyWidgets/man/formaNumericInputUpdate.Rd | 188 shinyWidgets-0.6.1/shinyWidgets/man/formatNumericInput.Rd | 252 shinyWidgets-0.6.1/shinyWidgets/man/html-dependencies.Rd | 88 shinyWidgets-0.6.1/shinyWidgets/man/inputSweetAlert.Rd | 301 shinyWidgets-0.6.1/shinyWidgets/man/knobInput.Rd | 248 shinyWidgets-0.6.1/shinyWidgets/man/numericInputIcon.Rd | 230 shinyWidgets-0.6.1/shinyWidgets/man/numericRangeInput.Rd | 130 shinyWidgets-0.6.1/shinyWidgets/man/pickerGroup-module.Rd | 288 shinyWidgets-0.6.1/shinyWidgets/man/pickerInput.Rd | 506 - shinyWidgets-0.6.1/shinyWidgets/man/pickerOptions.Rd | 292 shinyWidgets-0.6.1/shinyWidgets/man/prettyCheckbox.Rd | 422 - shinyWidgets-0.6.1/shinyWidgets/man/prettyCheckboxGroup.Rd | 320 shinyWidgets-0.6.1/shinyWidgets/man/prettyRadioButtons.Rd | 308 shinyWidgets-0.6.1/shinyWidgets/man/prettySwitch.Rd | 208 shinyWidgets-0.6.1/shinyWidgets/man/prettyToggle.Rd | 406 - shinyWidgets-0.6.1/shinyWidgets/man/progress-bar.Rd | 252 shinyWidgets-0.6.1/shinyWidgets/man/radioGroupButtons.Rd | 212 shinyWidgets-0.6.1/shinyWidgets/man/setShadow.Rd | 148 shinyWidgets-0.6.1/shinyWidgets/man/show_toast.Rd | 262 shinyWidgets-0.6.1/shinyWidgets/man/stati-card.Rd | 312 shinyWidgets-0.6.1/shinyWidgets/man/sweetalert-confirmation.Rd | 387 - shinyWidgets-0.6.1/shinyWidgets/man/sweetalert.Rd | 362 - shinyWidgets-0.6.1/shinyWidgets/man/textInputIcon.Rd | 202 shinyWidgets-0.6.1/shinyWidgets/man/updateAutonumericInput.Rd | 218 shinyWidgets-0.6.1/shinyWidgets/man/updateCheckboxGroupButtons.Rd | 302 shinyWidgets-0.6.1/shinyWidgets/man/updateNumericInputIcon.Rd | 168 shinyWidgets-0.6.1/shinyWidgets/man/updateNumericRangeInput.Rd | 46 shinyWidgets-0.6.1/shinyWidgets/man/updatePickerInput.Rd | 232 shinyWidgets-0.6.1/shinyWidgets/man/updatePrettyCheckbox.Rd | 122 shinyWidgets-0.6.1/shinyWidgets/man/updatePrettyCheckboxGroup.Rd | 238 shinyWidgets-0.6.1/shinyWidgets/man/updatePrettyRadioButtons.Rd | 230 shinyWidgets-0.6.1/shinyWidgets/man/updatePrettySwitch.Rd | 110 shinyWidgets-0.6.1/shinyWidgets/man/updatePrettyToggle.Rd | 118 shinyWidgets-0.6.1/shinyWidgets/man/updateRadioGroupButtons.Rd | 218 shinyWidgets-0.6.1/shinyWidgets/man/updateTextInputIcon.Rd | 158 shinyWidgets-0.6.1/shinyWidgets/man/useShinydashboardPlus.Rd | 330 shinyWidgets-0.6.1/shinyWidgets/man/useSweetAlert.Rd | 194 shinyWidgets-0.6.1/shinyWidgets/man/wNumbFormat.Rd | 178 shinyWidgets-0.6.1/shinyWidgets/tests/testthat.R | 8 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/helper.R | 42 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-SweetAlert.R | 338 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-airdatepicker.R | 176 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-autonumeric.R | 234 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-bsplus.R | 144 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-checkboxGroupButtons.R | 358 - shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-chooseSliderSkin.R | 86 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-colorSelector.R | 62 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-drop-menu.R | 104 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-dropdown.R | 60 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-dropdownButton.R | 52 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-input-icon.R | 122 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-knob.R | 106 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-modules.R | 158 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-multi.R | 106 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-noUiSlider.R | 38 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-numericRange.R | 140 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-panel.R | 76 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-pickerOptions.R | 40 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-radioGroupButtons.R | 358 - shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-set-background.R | 60 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-setShadow.R | 30 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-shinyWidgetsGallery.R | 34 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-sliderText.R | 144 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-spectrum.R | 48 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-spinners.R | 188 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-updateAwesomeCheckbox.R | 40 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-updateAwesomeCheckboxGroup.R | 40 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-updateAwesomeRadio.R | 40 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-updateCheckboxGroupButtons.R | 86 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-updateMaterialSwitch.R | 38 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-updateRadioGroupButtons.R | 86 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-updateSwitchInput.R | 42 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-utilityinputs.R | 100 shinyWidgets-0.6.1/shinyWidgets/tests/testthat/test-vertical-tab.R | 100 433 files changed, 37043 insertions(+), 36863 deletions(-)
Title: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Description: NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).
Author: Gregory Jefferis [aut, cre] (<https://orcid.org/0000-0002-0587-9355>),
James Manton [aut] (<https://orcid.org/0000-0001-9260-3156>)
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between nat versions 1.8.17 dated 2021-09-03 and 1.8.18 dated 2021-09-06
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS | 5 +++++ build/partial.rdb |binary inst/doc/Installation.html | 4 ++-- inst/doc/neurons-intro.R | 6 +++--- inst/doc/neurons-intro.Rmd | 6 +++--- inst/doc/neurons-intro.html | 10 +++++----- vignettes/neurons-intro.Rmd | 6 +++--- 9 files changed, 32 insertions(+), 27 deletions(-)
Title: Area-Proportional Euler and Venn Diagrams with Ellipses
Description: Generate area-proportional Euler diagrams
using numerical optimization. An Euler diagram is a generalization of a Venn
diagram, relaxing the criterion that all interactions need to be
represented. Diagrams may be fit with ellipses and circles via
a wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre] (<https://orcid.org/0000-0002-4029-5945>),
A. Jonathan R. Godfrey [ctb],
Peter Gustafsson [ctb],
David H. Eberly [ctb] (geometric algorithms),
Emanuel Huber [ctb] (root solver code),
Kamil Slowikowski [ctb, cph] (modified code from ggrepel),
Florian Privé [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between eulerr versions 6.1.0 dated 2020-03-09 and 6.1.1 dated 2021-09-06
DESCRIPTION | 8 MD5 | 71 ++--- NEWS.md | 491 +++++++++++++++++------------------ R/data.R | 4 R/euler.R | 11 R/fit_diagram.R | 16 - R/parse_input.R | 18 - README.md | 73 ++--- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 76 ++++- inst/doc/gallery.html | 217 ++++++++------- inst/doc/introduction.html | 157 ++++++----- inst/doc/under-the-hood.Rmd | 262 ++++++++---------- inst/doc/under-the-hood.html | 40 ++ inst/doc/venn-diagrams.html | 81 ++++- inst/doc/visualization.html | 55 +++ man/euler.Rd | 13 man/eulerr_options.Rd | 2 man/figures/README-plot_method-1.png |binary man/fruits.Rd | 6 man/organisms.Rd | 6 man/pain.Rd | 8 man/plants.Rd | 8 man/plot.euler.Rd | 8 man/print.euler.Rd | 4 man/print.venn.Rd | 4 man/setup_grobs.Rd | 2 man/setup_tag.Rd | 2 man/venn.Rd | 2 src/RcppExports.cpp | 5 src/areas.h | 8 src/ellipse.h | 2 src/helpers.h | 4 src/solver.h | 4 vignettes/eulerr.bib | 2 vignettes/under-the-hood.Rmd | 262 ++++++++---------- 37 files changed, 1062 insertions(+), 870 deletions(-)
Title: Create Simple Yet Powerful HTML Documents with Light Weight CSS
Frameworks
Description: Create minimal, responsive, and style-agnostic HTML documents with
the lightweight CSS frameworks such as 'sakura', 'Water.css', and 'spcss'.
Powerful features include table of contents floating as a sidebar,
folding codes and results, and more.
Author: Atsushi Yasumoto [aut, cph, cre]
(<https://orcid.org/0000-0002-8335-495X>),
Angelos Chalaris [aut] (mini.css),
Susam Pal [aut] (spcss),
Mitesh Shah [aut] (sakura),
Kognise [aut] (Water.css)
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>
Diff between minidown versions 0.1.1 dated 2021-04-09 and 0.2.0 dated 2021-09-06
DESCRIPTION | 8 ++-- MD5 | 16 ++++----- NEWS.md | 7 ++++ R/spec-knitr-opts-chunk.R | 2 - R/spec-knitr-opts-hooks.R | 4 +- build/vignette.rds |binary inst/doc/Writing-vignettes-with-minidown.html | 11 +++--- inst/rmarkdown/html/tabset/tabset.js | 18 +++++++---- inst/rmarkdown/templates/mini_document/skeleton/skeleton.Rmd | 17 +++++++--- 9 files changed, 54 insertions(+), 29 deletions(-)
Title: Human and Machine-Readable Justifications and Justified
Decisions Based on 'YAML'
Description: Leverages the 'yum' package to
implement a 'YAML' ('YAML Ain't Markup Language', a human
friendly standard for data serialization; see <https:yaml.org>)
standard for documenting justifications, such as for decisions
taken during the planning, execution and analysis of a study
or during the development of a behavior change intervention
as illustrated by Marques & Peters (2019)
<doi:10.17605/osf.io/ndxha>. These justifications are both
human- and machine-readable, facilitating efficient extraction
and organisation.
Author: Gjalt-Jorn Ygram Peters [aut, cre]
(<https://orcid.org/0000-0002-0336-9589>),
Szilvia Zorgo [ctb] (<https://orcid.org/0000-0002-6916-2097>)
Maintainer: Gjalt-Jorn Ygram Peters <gjalt-jorn@behaviorchange.eu>
Diff between justifier versions 0.2.0 dated 2021-07-12 and 0.2.1 dated 2021-09-06
DESCRIPTION | 8 MD5 | 45 +- NAMESPACE | 21 + R/c.justifierElement.R |only R/c.justifierStructured.R |only R/c.justifierStructuredObject.R |only R/create_justifierTree.R | 23 + R/export_to_json.R |only R/flatten.R |only R/get_ids_from_structured_justifierElements.R |only R/has_justifierElement.R |only R/idRef.R |only R/import_from_json.R |only R/randomSlug.R |only R/selective_flattening.R |only R/spc.R |only R/srce.R | 88 +--- R/whichJustifier.R |only inst/doc/general-introduction-to-justifier.html | 4 inst/doc/justifier-in-intervention-development.html | 4 inst/doc/justifier-in-study-design.html | 12 man/apply_graph_theme.Rd | 132 +++---- man/constructingJustifications.Rd | 360 ++++++++++---------- man/export_to_json.Rd |only man/flatteningJustifierElements.Rd |only man/import_from_json.Rd |only man/load_justifications.Rd | 286 +++++++-------- man/randomSlug.Rd |only man/referencingById.Rd |only man/sanitize_for_DiagrammeR.Rd | 54 +-- man/structuredJustifications.Rd |only man/workspace.Rd | 68 +-- man/wrapVector.Rd | 70 +-- 33 files changed, 595 insertions(+), 580 deletions(-)
Title: Miscellaneous Functions in C++
Description: Provides utility functions that are simply, frequently used,
but may require higher performance that what can be obtained from base R.
Incidentally provides support for 'reverse geocoding', such as matching a point
with its nearest neighbour in another array. Used as a complement to package
'hutils' by sacrificing compilation or installation time for higher running
speeds. The name is a portmanteau of the author and 'Rcpp'.
Author: Hugh Parsonage [aut, cre],
Simon Urbanek [ctb] (fastmatch components)
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutilscpp versions 0.8.0 dated 2021-07-24 and 0.8.1 dated 2021-09-06
hutilscpp-0.8.0/hutilscpp/tests/testthat |only hutilscpp-0.8.0/hutilscpp/tests/testthat.R |only hutilscpp-0.8.1/hutilscpp/DESCRIPTION | 8 hutilscpp-0.8.1/hutilscpp/MD5 | 160 +- hutilscpp-0.8.1/hutilscpp/NEWS.md | 8 hutilscpp-0.8.1/hutilscpp/R/are_even.R | 138 +- hutilscpp-0.8.1/hutilscpp/R/count_logical.R | 34 hutilscpp-0.8.1/hutilscpp/R/fmatchp.R | 154 +- hutilscpp-0.8.1/hutilscpp/R/match_nrst_haversine.R | 480 ++++---- hutilscpp-0.8.1/hutilscpp/R/minmax.R | 22 hutilscpp-0.8.1/hutilscpp/R/pcg_hash.R | 58 - hutilscpp-0.8.1/hutilscpp/R/test_that.R |only hutilscpp-0.8.1/hutilscpp/R/utils.R | 7 hutilscpp-0.8.1/hutilscpp/R/which_first.R | 1165 ++++++++++----------- hutilscpp-0.8.1/hutilscpp/R/which_firstNA.R | 54 hutilscpp-0.8.1/hutilscpp/inst/tinytest |only hutilscpp-0.8.1/hutilscpp/src/CImplies.c | 42 hutilscpp-0.8.1/hutilscpp/src/Ccount_logical.c | 11 hutilscpp-0.8.1/hutilscpp/src/Crange.c | 4 hutilscpp-0.8.1/hutilscpp/src/Cwhich_first.c | 27 hutilscpp-0.8.1/hutilscpp/src/hutilscpp.h | 8 hutilscpp-0.8.1/hutilscpp/src/init.c | 2 hutilscpp-0.8.1/hutilscpp/tests/tinytest.R |only 23 files changed, 1199 insertions(+), 1183 deletions(-)
Title: Send Email Messages
Description: A light, simple tool for sending emails with minimal dependencies.
Author: Andrew B. Collier [aut, cre],
Matt Dennis [ctb],
Antoine Bichat [ctb] (<https://orcid.org/0000-0001-6599-7081>),
Daniel Fahey [ctb],
Johann R. Kleinbub [ctb],
Panagiotis Moulos [ctb]
Maintainer: Andrew B. Collier <andrew.b.collier@gmail.com>
Diff between emayili versions 0.4.17 dated 2021-09-02 and 0.4.18 dated 2021-09-06
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ R/body.R | 34 ++++++++++++++++++++++++++++++++-- R/envelope.R | 21 ++++++++++++++++++++- R/message.R | 4 ++-- R/utils.R | 8 ++++++++ README.md | 29 ++++++++++++++++++++++++++++- man/print.envelope.Rd | 14 ++++++++++++-- man/text.Rd | 21 +++++++++++++++++++-- 10 files changed, 138 insertions(+), 22 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using 'RcppParallel' and 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.1.7 dated 2021-07-26 and 0.1.8 dated 2021-09-06
DESCRIPTION | 6 MD5 | 43 +- NAMESPACE | 4 NEWS.md | 15 R/RcppExports.R | 4 R/language.R | 193 ++++++++++- R/parallels-apply-script.R |only R/parallels-future.R | 13 R/parallels-rscripts.R | 2 R/shortcuts.R | 9 R/utils-rstudio.R | 61 ++- R/zzz.R | 19 + configure | 691 +++++++++++++++++++++------------------- configure.ac | 1 inst/doc/r_expr_addons.html | 6 inst/doc/utility_functions.html | 2 man/as_pipe.Rd |only man/async_works.Rd | 3 man/get_dots.Rd | 33 + man/lapply_callr.Rd |only man/rs_exec.Rd | 26 + src/RcppExports.cpp | 12 src/utils.cpp | 30 + src/utils.h | 7 24 files changed, 793 insertions(+), 387 deletions(-)
Title: Tools to Visualize CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafvis' R-package provides a collection of R-operators for the analysis and
visualization of CM SAF NetCDF data.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafvis versions 1.1.1 dated 2021-02-22 and 1.1.5 dated 2021-09-06
DESCRIPTION | 9 MD5 | 11 NEWS.md | 4 R/CapWords.R |only R/quicklook.R | 692 +++++++++++++++++++++++++++++++++++++----------------- build/partial.rdb |binary man/quicklook.Rd | 6 7 files changed, 503 insertions(+), 219 deletions(-)
Title: Miscellaneous Functions for Working with 'stars' Rasters
Description: Miscellaneous functions for working with 'stars' objects, mainly single-band rasters. Currently includes functions for: (1) focal filtering, (2) detrending of Digital Elevation Models, (3) calculating flow length, (4) calculating the Convergence Index, (5) calculating topographic aspect and topographic slope.
Author: Michael Dorman [aut, cre]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between starsExtra versions 0.2.5 dated 2021-06-15 and 0.2.6 dated 2021-09-06
DESCRIPTION | 6 MD5 | 16 NEWS.md | 6 R/aspect.R | 4 R/slope.R | 6 build/vignette.rds |binary inst/doc/intro.html | 1285 ---------------------------------------------------- man/aspect.Rd | 2 man/slope.Rd | 4 9 files changed, 42 insertions(+), 1287 deletions(-)
Title: Multivariate Analysis of Variance Based on Distances and
Permutations
Description: Calculates multivariate analysis of variance based on permutations and some associated pictorial representations. The pictorial representation is based on the principal coordinates of the group means. There are some original results that will be published soon.
Author: Laura Vicente-Gonzalez, Jose Luis Vicente-Villardon
Maintainer: Laura Vicente-Gonzalez <laura20vg@usal.es>
Diff between PERMANOVA versions 0.1.0 dated 2021-02-17 and 0.2.0 dated 2021-09-06
DESCRIPTION | 6 +-- MD5 | 75 ++++++++++++++++++++------------------- NAMESPACE | 2 - R/BiplotVar.R | 10 ++--- R/BootCanonicalBiplot.R | 8 ++-- R/BootDisMANOVA.R | 8 +--- R/BootDistCanonicalAnalysis.R | 75 +++++++++++++++++---------------------- R/BootMANOVA.R | 4 +- R/ConcEllipse.R | 3 - R/DistContinuous.R | 1 R/MANOVA.Estimation.R | 2 - R/MANOVA.R | 2 - R/PERMANOVA.Estimation.R | 2 - R/PERMANOVA.R | 32 ++++++++-------- R/PlotClustersBiplot.R | 4 +- R/PostHocComp.R | 32 ++++++++-------- R/ProcrustesSimple.R | 12 +++--- R/plot.BootCanonAnalysis.R | 24 +++++++++--- R/plot.BootDisMANOVA.R | 52 ++++++++++++--------------- R/plot.MANOVA.Biplot.R |only R/plot.MANOVA.R | 30 +++++++++------ R/plot.PERMANOVA.R | 60 +++++++++++++------------------ R/plot.fraction.R |only man/BinaryVectorCheck.Rd | 2 - man/BootDisMANOVA.Rd | 8 ++-- man/BootDistCanonicalAnalysis.Rd | 7 +-- man/ConcEllipse.Rd | 2 - man/DistContinuous.Rd | 2 - man/MANOVA.Rd | 4 +- man/PERMANOVA.Rd | 25 +++++++++++-- man/PerMANOVA.Simple.Rd | 2 - man/PostHocComp.Rd | 2 - man/TextSmart.Rd | 2 - man/inbox.Rd | 2 - man/plot.BootCanonAnalysis.Rd | 10 ++--- man/plot.MANOVA.Biplot.Rd |only man/plot.MANOVA.Rd | 40 ++++++++++++++------ man/plot.PERMANOVA.Rd | 24 +++++++++--- man/summary.BootDisMANOVA.Rd | 2 - man/wine.Rd | 6 +-- 40 files changed, 317 insertions(+), 267 deletions(-)
Title: k-Nearest Neighbor Join for Spatial Data
Description: K-nearest neighbor search for projected and non-projected 'sf' spatial layers. Nearest neighbor search uses (1) C code from 'GeographicLib' for lon-lat point layers, (2) function knn() from package 'nabor' for projected point layers, or (3) function st_distance() from package 'sf' for line or polygon layers. The package also includes several other utility functions for spatial analysis.
Author: Michael Dorman [aut, cre],
Johnathan Rush [ctb],
Ian Hough [ctb],
Dominic Russel [ctb],
Luigi Ranghetti [ctb],
Attilio Benini [ctb],
Arnaud Tarroux [ctb],
Charles F.F Karney [ctb, cph] (Author of included C code from
'GeographicLib' for geodesic distance)
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between nngeo versions 0.4.3 dated 2021-06-13 and 0.4.4 dated 2021-09-06
nngeo-0.4.3/nngeo/data/line.rda |only nngeo-0.4.4/nngeo/DESCRIPTION | 12 ++++++++---- nngeo-0.4.4/nngeo/MD5 | 30 +++++++++++++++--------------- nngeo-0.4.4/nngeo/NAMESPACE | 1 + nngeo-0.4.4/nngeo/NEWS.md | 8 ++++++-- nngeo-0.4.4/nngeo/R/data.R | 4 ---- nngeo-0.4.4/nngeo/R/st_nn.R | 2 +- nngeo-0.4.4/nngeo/R/st_remove_holes.R | 9 +++++---- nngeo-0.4.4/nngeo/R/st_segments.R | 10 +++++++++- nngeo-0.4.4/nngeo/build/vignette.rds |binary nngeo-0.4.4/nngeo/data/line.RData |only nngeo-0.4.4/nngeo/inst/doc/intro.Rmd | 2 +- nngeo-0.4.4/nngeo/inst/doc/intro.pdf |binary nngeo-0.4.4/nngeo/man/nngeo-package.Rd | 2 ++ nngeo-0.4.4/nngeo/man/st_nn.Rd | 2 +- nngeo-0.4.4/nngeo/man/st_remove_holes.Rd | 3 +-- nngeo-0.4.4/nngeo/vignettes/intro.Rmd | 2 +- 17 files changed, 51 insertions(+), 36 deletions(-)
Title: 'sf'-Compatible Interface to 'Google Maps' APIs
Description: Interface to the 'Google Maps' APIs: (1) routing directions based on the 'Directions' API, returned as 'sf' objects, either as single feature per alternative route, or a single feature per segment per alternative route; (2) travel distance or time matrices based on the 'Distance Matrix' API; (3) geocoded locations based on the 'Geocode' API, returned as 'sf' objects, either points or bounds; (4) map images using the 'Maps Static' API, returned as 'stars' objects.
Author: Michael Dorman [aut, cre],
Tom Buckley [ctb],
Alex Dannenberg [ctb],
Mihir Bhaskar [ctb],
Juan P. Fonseca-Zamora [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between mapsapi versions 0.4.9 dated 2021-06-13 and 0.5.0 dated 2021-09-06
DESCRIPTION | 6 MD5 | 10 NEWS.md | 6 R/mp_map.R | 2 build/vignette.rds |binary inst/doc/intro.html | 6225 ---------------------------------------------------- 6 files changed, 48 insertions(+), 6201 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'PDF', 'Microsoft Word' and 'Microsoft PowerPoint'
documents from 'R Markdown'. Functions are provided to let users create tables, modify and format
their content. It also extends package 'officer' that does not contain any feature for customized
tabular reporting.
Author: David Gohel [aut, cre],
Clementine Jager [ctb],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] (rmarkdown for docx output),
Titouan Robert [ctb],
Michael Barrowman [ctb] (inline footnotes),
Atsushi Yasumoto [ctb] (support for bookdown cross reference),
Paul Julian [ctb] (support for gam objects)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.6.7 dated 2021-07-22 and 0.6.8 dated 2021-09-06
DESCRIPTION | 6 ++-- MD5 | 54 ++++++++++++++++++++-------------------- NEWS.md | 7 +++++ R/05_content.R | 6 +++- R/chunk_images.R | 37 ++++++++++++++++++++++----- R/docx_str.R | 7 ++--- R/flextable_sizes.R | 48 ++++++++++++++++++++++------------- R/html_str.R | 4 +- R/styles.R | 5 ++- R/utils.R | 14 ++++++++++ inst/web_1.0.0/tabwid.css | 2 - man/as_equation.Rd | 4 ++ man/as_image.Rd | 4 ++ man/autofit.Rd | 4 ++ man/dim_pretty.Rd | 4 ++ man/fit_to_width.Rd | 4 ++ man/flextable_dim.Rd | 7 ++--- man/gg_chunk.Rd | 4 ++ man/height.Rd | 6 ++-- man/line_spacing.Rd | 4 ++ man/linerange.Rd | 5 ++- man/lollipop.Rd | 3 ++ man/minibar.Rd | 5 ++- man/plot_chunk.Rd | 3 ++ man/set_table_properties.Rd | 12 +++++--- man/width.Rd | 4 ++ tests/testthat/test-captions.R | 10 +++++-- tests/testthat/test-rmarkdown.R | 6 ---- 28 files changed, 190 insertions(+), 89 deletions(-)
Title: Tool For Analysis of Images in Experiments
Description: Tools created for image analysis in researches. There are functions associated with image editing, segmentation, and obtaining biometric measurements (Este pacote foi idealizado para para a analise de imagens em pesquisas. Ha funcoes associadas a edicao de imagens, segmentacao, e obtencao de medidas biometricas).
Author: Alcinei Mistico Azevedo [aut, cre]
(<https://orcid.org/0000-0001-5196-0851>)
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between ExpImage versions 0.1.0 dated 2021-08-10 and 0.2.0 dated 2021-09-06
DESCRIPTION | 8 ++-- MD5 | 84 ++++++++++++++++++++++++++++++++------------ NAMESPACE | 14 +++++++ NEWS.md | 12 ++++++ R/crop_image.R | 87 +++++++++++++++++++++++++++++++--------------- R/edit_image.R | 15 ++++++- R/edit_imageGUI.R |only R/example_image.R | 5 +- R/extract_pixels.R | 8 ++++ R/gray_scale.R | 60 ++++++++++++++++++++++++++----- R/join_image.R | 7 +++ R/mask_pixels.R | 15 ++----- R/measure_image.R | 4 +- R/pick_color.R |only R/plot_image.R |only R/plot_indexes.R |only R/plot_meansures.R | 18 ++++----- R/rotate_image.R |only R/segmentation.R | 6 +-- R/segmentation_logit.R | 23 +++++------- R/skeletonize_image.R | 2 - R/thinning_image.R | 2 - build |only inst/doc |only inst/images/Edit.png |only inst/images/Feijao.jpg |binary inst/images/alface.jpg |only inst/images/gado.jpg |only man/crop_image.Rd | 34 +++++------------ man/edit_image.Rd | 2 - man/edit_imageGUI.Rd |only man/example_image.Rd | 1 man/gray_scale.Rd | 29 ++++++++++++--- man/pick_color.Rd |only man/plot_image.Rd |only man/plot_indexes.Rd |only man/plot_meansures.Rd | 16 ++++---- man/rotate_image.Rd |only man/segmentation_logit.Rd | 30 ++++++++++----- vignettes |only 40 files changed, 330 insertions(+), 152 deletions(-)
Title: Interpretation of Heterogeneous Single-Cell Gene Expression Data
Description: We develop a novel matrix factorization tool named 'scINSIGHT' to jointly analyze multiple single-cell gene expression samples from biologically heterogeneous sources, such as different disease phases, treatment groups, or developmental stages. Given multiple gene expression samples from different biological conditions, 'scINSIGHT' simultaneously identifies common and condition-specific gene pathways and quantify their expression levels in each sample in a lower-dimensional space. With the factorized results, the inferred expression levels and memberships of common gene pathways can be used to cluster cells and detect cell identities, and the condition-specific gene pathways can help compare functional differences in transcriptomes from distinct conditions.
Author: Kun Qian [aut, ctb, cre] (<https://orcid.org/0000-0002-2354-2238>),
Wei Vivian Li [aut, ctb] (<https://orcid.org/0000-0002-2087-2709>)
Maintainer: Kun Qian <Kun_Qian@foxmail.com>
Diff between scINSIGHT versions 0.1.0 dated 2021-05-03 and 0.1.1 dated 2021-09-06
DESCRIPTION | 8 MD5 | 16 - NAMESPACE | 40 +-- R/scinsight.R | 527 +++++++++++++++++++++---------------------- R/utils.R | 583 ++++++++++++++++++++++++------------------------ man/create_scINSIGHT.Rd | 64 ++--- man/run_scINSIGHT.Rd | 116 ++++----- man/scINSIGHT-class.Rd | 70 ++--- src/RcppExports.cpp | 5 9 files changed, 718 insertions(+), 711 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
The package does not require any installation of Microsoft products to be able to write Microsoft
files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] (function body_replace_all_text),
Liz Sander [ctb] (several documentation fixes),
Anton Victorson [ctb] (fixes xml structures),
Jon Calder [ctb] (update vignettes),
John Harrold [ctb] (function annotate_base),
John Muschelli [ctb] (google doc compatibility)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.3.19 dated 2021-07-21 and 0.4.0 dated 2021-09-06
DESCRIPTION | 6 MD5 | 80 +++++---- NAMESPACE | 6 NEWS.md | 16 + R/docx_add_chunk.R | 80 ++++----- R/docx_cursor.R | 10 - R/docx_footnotes.R | 19 -- R/docx_replace.R | 5 R/docx_section.R | 16 - R/formatting_properties.R | 59 +++++-- R/ooxml.R | 242 +++++++++++++++++------------- R/ooxml_block_objects.R | 4 R/ooxml_run_objects.R | 106 +++++++++++++ R/read_docx.R | 59 +++++-- README.md | 31 +-- man/body_end_section_columns_landscape.Rd | 1 man/body_replace_text_at_bkm.Rd | 5 man/change_styles.Rd | 12 - man/cursor.Rd | 10 - man/external_img.Rd | 2 man/fp_text.Rd | 19 ++ man/fpar.Rd | 2 man/ftext.Rd | 2 man/hyperlink_ftext.Rd | 2 man/run_autonum.Rd | 2 man/run_bookmark.Rd | 2 man/run_columnbreak.Rd | 2 man/run_footnote.Rd |only man/run_footnoteref.Rd |only man/run_linebreak.Rd | 2 man/run_pagebreak.Rd | 2 man/run_reference.Rd | 2 man/run_word_field.Rd | 2 man/slip_in_column_break.Rd | 5 man/slip_in_footnote.Rd | 20 -- man/slip_in_img.Rd | 15 - man/slip_in_seqfield.Rd | 27 --- man/slip_in_text.Rd | 17 -- man/slip_in_xml.Rd | 4 tests/testthat/test-docx-add.R | 9 - tests/testthat/test-docx-insert.R | 46 +++-- tests/testthat/test-docx-replace.R | 19 +- 42 files changed, 577 insertions(+), 393 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.20.1 dated 2021-09-02 and 1.20.2 dated 2021-09-06
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Compute Energy Landscapes
Description: Compute energy landscapes using a digital elevation model raster and body mass of animals. Vignette available at: <https://emilio-berti.github.io/enerscape.html>.
Author: Emilio Berti
Maintainer: Emilio Berti <emilio.berti@idiv.de>
Diff between enerscape versions 0.1.1 dated 2021-05-21 and 0.1.2 dated 2021-09-06
DESCRIPTION | 9 ++++----- MD5 | 6 +++--- R/enerscape.R | 2 +- build/partial.rdb |binary 4 files changed, 8 insertions(+), 9 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>),
Mark Raasveldt [aut] (<https://orcid.org/0000-0001-5005-6844>),
DuckDB Contributors [aut],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Zverovich [cph],
RAD Game Tools [cph],
Valve Software [cph],
Rich Geldreich [cph],
Tenacious Software LLC [cph],
The RE2 Authors [cph],
Google Inc. [cph],
Facebook Inc. [cph],
Steven G. Johnson [cph],
Jiahao Chen [cph],
Tony Kelman [cph],
Jonas Fonseca [cph],
Lukas Fittl [cph],
Salvatore Sanfilippo [cph],
Art.sy, Inc. [cph],
Oran Agra [cph],
Redis Labs, Inc. [cph],
Melissa O'Neill [cph],
PCG Project contributors [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>
Diff between duckdb versions 0.2.8 dated 2021-08-02 and 0.2.9 dated 2021-09-06
duckdb-0.2.8/duckdb/src/duckdb/src/function/scalar/nested |only duckdb-0.2.8/duckdb/src/duckdb/src/include/duckdb/storage/constant_segment.hpp |only duckdb-0.2.8/duckdb/src/duckdb/src/include/duckdb/storage/numeric_segment.hpp |only duckdb-0.2.8/duckdb/src/duckdb/src/include/duckdb/storage/string_segment.hpp |only duckdb-0.2.8/duckdb/src/duckdb/src/include/duckdb/storage/table/persistent_segment.hpp |only duckdb-0.2.8/duckdb/src/duckdb/src/include/duckdb/storage/table/transient_segment.hpp |only duckdb-0.2.8/duckdb/src/duckdb/src/include/duckdb/storage/table/validity_segment.hpp |only duckdb-0.2.8/duckdb/src/duckdb/src/include/duckdb/storage/uncompressed_segment.hpp |only duckdb-0.2.8/duckdb/src/duckdb/src/main/duckdb-c.cpp |only duckdb-0.2.8/duckdb/src/duckdb/src/storage/constant_segment.cpp |only duckdb-0.2.8/duckdb/src/duckdb/src/storage/numeric_segment.cpp |only duckdb-0.2.8/duckdb/src/duckdb/src/storage/string_segment.cpp |only duckdb-0.2.8/duckdb/src/duckdb/src/storage/table/persistent_segment.cpp |only duckdb-0.2.8/duckdb/src/duckdb/src/storage/table/transient_segment.cpp |only duckdb-0.2.8/duckdb/src/duckdb/src/storage/table/validity_segment.cpp |only duckdb-0.2.8/duckdb/src/duckdb/src/storage/uncompressed_segment.cpp |only duckdb-0.2.9/duckdb/DESCRIPTION | 6 duckdb-0.2.9/duckdb/MD5 | 477 duckdb-0.2.9/duckdb/NAMESPACE | 3 duckdb-0.2.9/duckdb/R/Connection.R | 171 duckdb-0.2.9/duckdb/R/Result.R | 103 duckdb-0.2.9/duckdb/README.md |only duckdb-0.2.9/duckdb/man/duckdb_connection-class.Rd | 8 duckdb-0.2.9/duckdb/man/duckdb_result-class.Rd | 16 duckdb-0.2.9/duckdb/src/duckdb/amalgamation-1.cpp | 18 duckdb-0.2.9/duckdb/src/duckdb/amalgamation-2.cpp | 6 duckdb-0.2.9/duckdb/src/duckdb/amalgamation-3.cpp | 32 duckdb-0.2.9/duckdb/src/duckdb/amalgamation-4.cpp | 42 duckdb-0.2.9/duckdb/src/duckdb/amalgamation-5.cpp | 26 duckdb-0.2.9/duckdb/src/duckdb/amalgamation-6.cpp | 14 duckdb-0.2.9/duckdb/src/duckdb/amalgamation-7.cpp | 28 duckdb-0.2.9/duckdb/src/duckdb/amalgamation-8.cpp | 22 duckdb-0.2.9/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/extension/parquet/include/column_reader.hpp | 1 duckdb-0.2.9/duckdb/src/duckdb/extension/parquet/include/resizable_buffer.hpp | 7 duckdb-0.2.9/duckdb/src/duckdb/extension/parquet/include/string_column_reader.hpp | 6 duckdb-0.2.9/duckdb/src/duckdb/extension/parquet/include/thrift_tools.hpp | 29 duckdb-0.2.9/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp | 8 duckdb-0.2.9/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 12 duckdb-0.2.9/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 10 duckdb-0.2.9/duckdb/src/duckdb/src/catalog/catalog.cpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/common/arrow_wrapper.cpp | 83 duckdb-0.2.9/duckdb/src/duckdb/src/common/enums/compression_type.cpp |only duckdb-0.2.9/duckdb/src/duckdb/src/common/file_buffer.cpp | 37 duckdb-0.2.9/duckdb/src/duckdb/src/common/file_system.cpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/common/operator/string_cast.cpp | 5 duckdb-0.2.9/duckdb/src/duckdb/src/common/sort |only duckdb-0.2.9/duckdb/src/duckdb/src/common/types/chunk_collection.cpp | 155 duckdb-0.2.9/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 34 duckdb-0.2.9/duckdb/src/duckdb/src/common/types/row_data_collection.cpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/common/types/row_layout.cpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/common/types/value.cpp | 11 duckdb-0.2.9/duckdb/src/duckdb/src/common/types/vector.cpp | 9 duckdb-0.2.9/duckdb/src/duckdb/src/common/vector_operations/is_distinct_from.cpp | 29 duckdb-0.2.9/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp | 117 duckdb-0.2.9/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 264 duckdb-0.2.9/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 38 duckdb-0.2.9/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 2121 duckdb-0.2.9/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 448 duckdb-0.2.9/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/execution/physical_plan/plan_order.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 138 duckdb-0.2.9/duckdb/src/duckdb/src/function/aggregate/distributive/minmax.cpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/function/aggregate/distributive/string_agg.cpp | 32 duckdb-0.2.9/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp | 71 duckdb-0.2.9/duckdb/src/duckdb/src/function/aggregate/nested/list.cpp | 9 duckdb-0.2.9/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp |only duckdb-0.2.9/duckdb/src/duckdb/src/function/compression_config.cpp |only duckdb-0.2.9/duckdb/src/duckdb/src/function/function.cpp | 32 duckdb-0.2.9/duckdb/src/duckdb/src/function/macro_function.cpp | 15 duckdb-0.2.9/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp | 27 duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/date/date_diff.cpp |only duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/date/date_part.cpp | 568 duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/date/date_sub.cpp |only duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/date/date_trunc.cpp | 422 duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/date/strftime.cpp | 17 duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/date_functions.cpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/list |only duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/map |only duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/operators/multiply.cpp | 22 duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/string/length.cpp | 47 duckdb-0.2.9/duckdb/src/duckdb/src/function/scalar/struct |only duckdb-0.2.9/duckdb/src/duckdb/src/function/table/arrow.cpp | 50 duckdb-0.2.9/duckdb/src/duckdb/src/function/table/system/pragma_storage_info.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb.h | 929 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/arrow_wrapper.hpp | 16 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/enums/compression_type.hpp |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/enums/date_part_specifier.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/file_buffer.hpp | 18 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 15 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/map.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/operator/comparison_operators.hpp | 16 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/operator/string_cast.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/sort |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp | 6 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 13 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/types/row_layout.hpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 84 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/decimal_cast.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/general_cast.hpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/vector_operations.hpp | 7 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/windows.hpp |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/common/windows_undefs.hpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp | 24 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic/stddev.hpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 42 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/compression |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/compression_function.hpp |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/scalar/date_functions.hpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime.hpp | 7 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 24 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/function/udf_function.hpp | 73 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 25 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/main/capi_internal.hpp |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 25 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/like_optimizations.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/parser/expression/function_expression.hpp | 9 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/show_select_info.hpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/parser/qualified_name.hpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/planner/bound_result_modifier.hpp | 17 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_window_expression.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 20 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/select_binder.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_order.hpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/block.hpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/block_manager.hpp | 20 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 23 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/string_checkpoint_state.hpp |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 11 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/write_overflow_strings_to_disk.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 50 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/data_pointer.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/in_memory_block_manager.hpp | 19 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/meta_block_writer.hpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/segment |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/single_file_block_manager.hpp | 15 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/table/append_state.hpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 9 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data_checkpointer.hpp |only duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 87 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 16 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 6 duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/main/appender.cpp | 86 duckdb-0.2.9/duckdb/src/duckdb/src/main/capi |only duckdb-0.2.9/duckdb/src/duckdb/src/main/client_context.cpp | 17 duckdb-0.2.9/duckdb/src/duckdb/src/main/connection.cpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/main/database.cpp | 11 duckdb-0.2.9/duckdb/src/duckdb/src/main/query_profiler.cpp | 7 duckdb-0.2.9/duckdb/src/duckdb/src/main/query_result.cpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/optimizer/rule/date_part_simplification.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/optimizer/rule/like_optimizations.cpp | 136 duckdb-0.2.9/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_order.cpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_window.cpp | 30 duckdb-0.2.9/duckdb/src/duckdb/src/optimizer/statistics_propagator.cpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/parallel/executor.cpp | 8 duckdb-0.2.9/duckdb/src/duckdb/src/parallel/pipeline.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/parser/expression/function_expression.cpp | 45 duckdb-0.2.9/duckdb/src/duckdb/src/parser/parsed_expression_iterator.cpp | 5 duckdb-0.2.9/duckdb/src/duckdb/src/parser/transform/expression/transform_function.cpp | 15 duckdb-0.2.9/duckdb/src/duckdb/src/parser/transform/expression/transform_operator.cpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/parser/transform/expression/transform_subquery.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/parser/transform/statement/transform_create_function.cpp | 19 duckdb-0.2.9/duckdb/src/duckdb/src/parser/transform/statement/transform_show.cpp | 22 duckdb-0.2.9/duckdb/src/duckdb/src/parser/transform/statement/transform_show_select.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/planner/bind_context.cpp | 16 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/expression/bind_aggregate_expression.cpp | 36 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/expression/bind_case_expression.cpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/expression/bind_columnref_expression.cpp | 5 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/expression/bind_comparison_expression.cpp | 4 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/expression/bind_operator_expression.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/expression/bind_subquery_expression.cpp | 9 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/expression/bind_window_expression.cpp | 14 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 10 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/query_node/bind_setop_node.cpp | 7 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 18 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/statement/bind_show.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/statement/bind_summarize.cpp |only duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/planner/binder/tableref/bind_subqueryref.cpp | 12 duckdb-0.2.9/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 12 duckdb-0.2.9/duckdb/src/duckdb/src/planner/expression/bound_parameter_expression.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 11 duckdb-0.2.9/duckdb/src/duckdb/src/planner/expression_binder.cpp | 58 duckdb-0.2.9/duckdb/src/duckdb/src/planner/planner.cpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/storage/block.cpp | 6 duckdb-0.2.9/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 155 duckdb-0.2.9/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 15 duckdb-0.2.9/duckdb/src/duckdb/src/storage/checkpoint/write_overflow_strings_to_disk.cpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 75 duckdb-0.2.9/duckdb/src/duckdb/src/storage/compression |only duckdb-0.2.9/duckdb/src/duckdb/src/storage/data_table.cpp | 11 duckdb-0.2.9/duckdb/src/duckdb/src/storage/local_storage.cpp | 7 duckdb-0.2.9/duckdb/src/duckdb/src/storage/meta_block_writer.cpp | 17 duckdb-0.2.9/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 139 duckdb-0.2.9/duckdb/src/duckdb/src/storage/statistics/segment_statistics.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/storage/storage_info.cpp | 2 duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/column_checkpoint_state.cpp |only duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/column_data.cpp | 279 duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp |only duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 395 duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 9 duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/persistent_table_data.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/row_group.cpp | 3 duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 18 duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp | 17 duckdb-0.2.9/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 18 duckdb-0.2.9/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/transaction/commit_state.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/src/transaction/rollback_state.cpp | 1 duckdb-0.2.9/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 12 duckdb-0.2.9/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 340 duckdb-0.2.9/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 1 duckdb-0.2.9/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |21711 ++++------ duckdb-0.2.9/duckdb/src/include/rapi.hpp | 25 duckdb-0.2.9/duckdb/src/include/typesr.hpp | 10 duckdb-0.2.9/duckdb/src/rapi.cpp | 4 duckdb-0.2.9/duckdb/src/scan.cpp | 36 duckdb-0.2.9/duckdb/src/statement.cpp | 174 duckdb-0.2.9/duckdb/src/types.cpp | 25 duckdb-0.2.9/duckdb/src/utils.cpp | 140 duckdb-0.2.9/duckdb/tests/testthat/test-DBItest.R | 48 duckdb-0.2.9/duckdb/tests/testthat/test_bind.R | 7 duckdb-0.2.9/duckdb/tests/testthat/test_fetch_arrow.R | 169 duckdb-0.2.9/duckdb/tests/testthat/test_register_arrow.R | 132 243 files changed, 16699 insertions(+), 15618 deletions(-)
Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsafops' R-package provides a collection of R-operators for the analysis and
manipulation of CM SAF NetCDF formatted data. Other CF conform NetCDF data with time,
longitude and latitude dimension should be applicable, but there is no guarantee for
an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsafops versions 1.1.1 dated 2021-02-18 and 1.2.0 dated 2021-09-06
DESCRIPTION | 7 MD5 | 125 +- NAMESPACE | 323 +++--- NEWS.md | 6 R/box_mergetime.R | 27 R/calc_timx_result.R | 10 R/cmsafops.R | 8 R/get_time.R | 10 R/mon_num_above.R |only R/mon_num_below.R |only R/mon_num_equal.R |only R/mon_num_wrapper.R |only R/num_above.R |only R/num_below.R |only R/num_equal.R |only R/num_wrapper.R |only R/selpoint.multi.R | 777 +++++++-------- R/tim_cor_covar_wrapper.R | 344 +++--- R/timavg.R |only R/timcumsum.R | 2 R/timselx_wrapper.R | 236 ++-- R/timx_wrapper.R | 15 build/partial.rdb |binary inst/WORDLIST | 3 man/cmsaf.detrend.Rd | 4 man/cmsaf.mk.test.Rd | 4 man/cmsaf.regres.Rd | 4 man/cmsafops.Rd | 8 man/mon.anomaly.Rd | 3 man/mon_num_above.Rd |only man/mon_num_below.Rd |only man/mon_num_equal.Rd |only man/monavg.Rd | 3 man/mondaymean.Rd | 3 man/monmax.Rd | 3 man/monmean.Rd | 3 man/monmin.Rd | 3 man/monpctl.Rd | 3 man/monsd.Rd | 3 man/monsum.Rd | 3 man/monvar.Rd | 3 man/multimonmean.Rd | 3 man/multimonsum.Rd | 3 man/num_above.Rd |only man/num_below.Rd |only man/num_equal.Rd |only man/timavg.Rd |only man/timmax.Rd | 4 man/timmean.Rd | 4 man/timmin.Rd | 4 man/timpctl.Rd | 4 man/timsd.Rd | 4 man/timsum.Rd | 4 man/trend.Rd | 4 man/trend_advanced.Rd | 4 man/ymonmax.Rd | 3 man/ymonmean.Rd | 3 man/ymonmin.Rd | 3 man/ymonsd.Rd | 3 man/ymonsum.Rd | 3 tests/testthat/test_timavg.R |only tests/testthat/test_timcor.R | 234 ++-- tests/testthat/test_timcovar.R | 232 ++-- tests/testthat/test_timcumsum.R | 762 +++++++-------- tests/testthat/test_timmax.R | 1612 ++++++++++++++++---------------- tests/testthat/test_timmean.R | 1462 ++++++++++++++--------------- tests/testthat/test_timmin.R | 1612 ++++++++++++++++---------------- tests/testthat/test_timpctl.R | 1922 +++++++++++++++++++-------------------- tests/testthat/test_timsd.R | 1608 ++++++++++++++++---------------- tests/testthat/test_timselmean.R | 192 +-- tests/testthat/test_timselsum.R | 192 +-- tests/testthat/test_timsum.R | 1460 ++++++++++++++--------------- 72 files changed, 6717 insertions(+), 6567 deletions(-)
Title: A Toolbox for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable monitoring of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of eight
National Meteorological and Hydrological Services.
The 'cmsaf' R-package includes a 'shiny' based interface for an easy application of
the 'cmsafops' and 'cmsafvis' packages - the CM SAF R Toolbox. The Toolbox offers an
easy way to prepare, manipulate, analyse and visualize CM SAF NetCDF formatted data.
Other CF conform NetCDF data with time, longitude and latitude dimension should be
applicable, but there is no guarantee for an error-free application.
CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>).
Detailed information and test data are provided on the CM SAF webpage
(<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsaf versions 3.1.0 dated 2021-02-19 and 3.2.0 dated 2021-09-06
DESCRIPTION | 9 +-- MD5 | 12 ++-- NEWS.md | 59 ++++++++++++--------- build/partial.rdb |binary inst/toolbox/global.R | 44 +++++++++++---- inst/toolbox/server.R | 140 +++++++++++++++++++++++++++++++++++++------------- inst/toolbox/ui.R | 15 +++-- 7 files changed, 191 insertions(+), 88 deletions(-)
Title: Pedigree, Genetic Merit, Phenotype, and Genotype Simulation
Description: Simulate pedigree, genetic merits and phenotypes with random/non-random matings followed by random/non-random selection with different intensities and patterns in males and females. Genotypes can be simulated for a given pedigree.
Bijma, P. & Rutten, M. (2002) <https://www.wur.nl/en/Research-Results/Chair-groups/Animal-Sciences/Animal-Breeding-and-Genomics-Group/Research/Software.htm>.
Author: Mohammad Ali Nilforooshan [aut, cre]
(<https://orcid.org/0000-0003-0339-5442>)
Maintainer: Mohammad Ali Nilforooshan <m.a.nilforooshan@gmail.com>
Diff between pedSimulate versions 1.1.1 dated 2021-08-18 and 1.2.0 dated 2021-09-06
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++++----- NAMESPACE | 1 + NEWS.md | 4 ++++ R/makegamete.R |only R/mutate.R |only R/pedSimulate.R | 7 ++++++- R/simulateGen.R |only man/pedSimulte-package.Rd | 7 ++++++- man/simulateGen.Rd |only 10 files changed, 31 insertions(+), 12 deletions(-)
More information about morphemepiece.data at CRAN
Permanent link
Title: Analysis of Multivariate Event Times
Description: Implementation of various statistical models for multivariate
event history data <doi:10.1007/s10985-013-9244-x>. Including multivariate
cumulative incidence models <doi:10.1002/sim.6016>, and bivariate random
effects probit models (Liability models) <doi:10.1016/j.csda.2015.01.014>.
Also contains two-stage binomial modelling that can do pairwise odds-ratio
dependence modelling based marginal logistic regression models. This is an
alternative to the alternating logistic regression approach (ALR).
Author: Klaus K. Holst [aut, cre],
Thomas Scheike [aut]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between mets versions 1.2.8.1 dated 2020-09-28 and 1.2.9 dated 2021-09-06
mets-1.2.8.1/mets/data/base1cumhaz.txt.xz |only mets-1.2.8.1/mets/data/base44cumhaz.txt.gz |only mets-1.2.8.1/mets/data/base4cumhaz.txt.xz |only mets-1.2.8.1/mets/data/drcumhaz.txt.xz |only mets-1.2.8.1/mets/data/migr.txt.xz |only mets-1.2.8.1/mets/data/multcif.txt.xz |only mets-1.2.8.1/mets/data/np.txt.xz |only mets-1.2.8.1/mets/data/twinbmi.txt.xz |only mets-1.2.8.1/mets/data/twinstut.txt.xz |only mets-1.2.8.1/mets/man/figures |only mets-1.2.8.1/mets/vignettes/basic-dutils.org |only mets-1.2.8.1/mets/vignettes/binomial-family.org |only mets-1.2.8.1/mets/vignettes/binomial-twin.org |only mets-1.2.8.1/mets/vignettes/marginal-cox.org |only mets-1.2.8.1/mets/vignettes/recurrent-events.org |only mets-1.2.8.1/mets/vignettes/twostage-survival.org |only mets-1.2.9/mets/DESCRIPTION | 12 mets-1.2.9/mets/MD5 | 249 - mets-1.2.9/mets/NAMESPACE | 15 mets-1.2.9/mets/NEWS.md | 8 mets-1.2.9/mets/R/bicomprisk.R | 132 mets-1.2.9/mets/R/bicomprisksim.R | 243 - mets-1.2.9/mets/R/binomial.regression.R | 1129 +++++ mets-1.2.9/mets/R/binomial.twostage.R | 229 - mets-1.2.9/mets/R/biprobit.R | 93 mets-1.2.9/mets/R/biprobit.time.R | 38 mets-1.2.9/mets/R/bptwin.R | 57 mets-1.2.9/mets/R/casewise.R | 78 mets-1.2.9/mets/R/cifreg.R | 160 mets-1.2.9/mets/R/clusterindex-reshape.R | 9 mets-1.2.9/mets/R/cor.R | 22 mets-1.2.9/mets/R/discrete-survival-haplo.R | 54 mets-1.2.9/mets/R/dreg.R | 172 mets-1.2.9/mets/R/fastapprox.R | 4 mets-1.2.9/mets/R/gof-phreg.R | 2 mets-1.2.9/mets/R/ipw.R | 2 mets-1.2.9/mets/R/methodstwinlm.R | 2 mets-1.2.9/mets/R/mutinomialreg.R | 73 mets-1.2.9/mets/R/phreg.R | 117 mets-1.2.9/mets/R/procformula.R | 3 mets-1.2.9/mets/R/recreg.R |only mets-1.2.9/mets/R/recurrent.marginal.R | 605 -- mets-1.2.9/mets/R/twinlm.R | 24 mets-1.2.9/mets/R/twinlm.time.R | 10 mets-1.2.9/mets/R/twostage.R | 1122 +++-- mets-1.2.9/mets/README.md | 8 mets-1.2.9/mets/build/vignette.rds |binary mets-1.2.9/mets/data/base1cumhaz.txt |only mets-1.2.9/mets/data/base44cumhaz.txt |only mets-1.2.9/mets/data/base4cumhaz.txt |only mets-1.2.9/mets/data/dermalridges.rda |binary mets-1.2.9/mets/data/dermalridgesMZ.rda |binary mets-1.2.9/mets/data/drcumhaz.txt |only mets-1.2.9/mets/data/hHaplos.rda |binary mets-1.2.9/mets/data/hapfreqs.rda |binary mets-1.2.9/mets/data/haploX.rda |binary mets-1.2.9/mets/data/mena.rda |binary mets-1.2.9/mets/data/migr.txt |only mets-1.2.9/mets/data/multcif.txt |only mets-1.2.9/mets/data/np.txt |only mets-1.2.9/mets/data/prt.rda |binary mets-1.2.9/mets/data/ttpd.rda |binary mets-1.2.9/mets/data/twinbmi.txt |only mets-1.2.9/mets/data/twinstut.txt |only mets-1.2.9/mets/inst/doc/basic-dutils.R | 6 mets-1.2.9/mets/inst/doc/basic-dutils.Rmd | 16 mets-1.2.9/mets/inst/doc/basic-dutils.html | 1268 ++---- mets-1.2.9/mets/inst/doc/binomial-family.R | 45 mets-1.2.9/mets/inst/doc/binomial-family.Rmd | 71 mets-1.2.9/mets/inst/doc/binomial-family.html | 1177 ++--- mets-1.2.9/mets/inst/doc/binomial-twin.Rmd | 4 mets-1.2.9/mets/inst/doc/binomial-twin.html | 1203 ++--- mets-1.2.9/mets/inst/doc/binreg-ate.R |only mets-1.2.9/mets/inst/doc/binreg-ate.Rmd |only mets-1.2.9/mets/inst/doc/binreg-ate.html |only mets-1.2.9/mets/inst/doc/binreg.R |only mets-1.2.9/mets/inst/doc/binreg.Rmd |only mets-1.2.9/mets/inst/doc/binreg.html |only mets-1.2.9/mets/inst/doc/cifreg.R | 11 mets-1.2.9/mets/inst/doc/cifreg.Rmd | 37 mets-1.2.9/mets/inst/doc/cifreg.html | 765 +-- mets-1.2.9/mets/inst/doc/haplo-discrete-ttp.Rmd | 4 mets-1.2.9/mets/inst/doc/haplo-discrete-ttp.html | 612 -- mets-1.2.9/mets/inst/doc/interval-discrete-survival.R |only mets-1.2.9/mets/inst/doc/interval-discrete-survival.Rmd |only mets-1.2.9/mets/inst/doc/interval-discrete-survival.html |only mets-1.2.9/mets/inst/doc/marginal-cox.R | 3 mets-1.2.9/mets/inst/doc/marginal-cox.Rmd | 7 mets-1.2.9/mets/inst/doc/marginal-cox.html | 494 -- mets-1.2.9/mets/inst/doc/quantitative-twin.R | 39 mets-1.2.9/mets/inst/doc/quantitative-twin.Rmd | 78 mets-1.2.9/mets/inst/doc/quantitative-twin.html | 2045 +--------- mets-1.2.9/mets/inst/doc/recurrent-events.R | 43 mets-1.2.9/mets/inst/doc/recurrent-events.Rmd | 71 mets-1.2.9/mets/inst/doc/recurrent-events.html | 1042 ++--- mets-1.2.9/mets/inst/doc/time-to-event-family-studies-arev.R |only mets-1.2.9/mets/inst/doc/time-to-event-family-studies-arev.Rmd |only mets-1.2.9/mets/inst/doc/time-to-event-family-studies-arev.html |only mets-1.2.9/mets/inst/doc/twostage-survival.R | 93 mets-1.2.9/mets/inst/doc/twostage-survival.Rmd | 170 mets-1.2.9/mets/inst/doc/twostage-survival.html | 1930 ++++----- mets-1.2.9/mets/inst/misc/dutils.org | 17 mets-1.2.9/mets/man/BinAugmentCifstrata.Rd | 3 mets-1.2.9/mets/man/bicomprisk.Rd | 1 mets-1.2.9/mets/man/binomial.twostage.Rd | 25 mets-1.2.9/mets/man/binreg.Rd | 15 mets-1.2.9/mets/man/binregATE.Rd |only mets-1.2.9/mets/man/binregCasewise.Rd |only mets-1.2.9/mets/man/biprobit.Rd | 43 mets-1.2.9/mets/man/bptwin.Rd | 7 mets-1.2.9/mets/man/casewise.Rd | 1 mets-1.2.9/mets/man/casewise.test.Rd | 4 mets-1.2.9/mets/man/cifreg.Rd | 7 mets-1.2.9/mets/man/dreg.Rd | 80 mets-1.2.9/mets/man/easy.binomial.twostage.Rd | 4 mets-1.2.9/mets/man/easy.survival.twostage.Rd | 6 mets-1.2.9/mets/man/interval.logitsurv.discrete.Rd | 30 mets-1.2.9/mets/man/ipw.Rd | 2 mets-1.2.9/mets/man/mlogit.Rd | 12 mets-1.2.9/mets/man/random.cif.Rd | 6 mets-1.2.9/mets/man/recreg.Rd |only mets-1.2.9/mets/man/recurrentMarginal.Rd | 1 mets-1.2.9/mets/man/simRecurrentII.Rd | 12 mets-1.2.9/mets/man/survival.iterative.Rd | 4 mets-1.2.9/mets/man/survival.twostage.Rd | 41 mets-1.2.9/mets/man/survival.twostageCC.Rd |only mets-1.2.9/mets/man/twinlm.Rd | 14 mets-1.2.9/mets/man/twostageMLE.Rd | 3 mets-1.2.9/mets/src/RcppExports.cpp | 5 mets-1.2.9/mets/src/binomial-twostage.cpp | 5 mets-1.2.9/mets/src/fastcox.cpp | 359 - mets-1.2.9/mets/src/init.c | 12 mets-1.2.9/mets/src/mvn.cpp | 16 mets-1.2.9/mets/src/survival-twostage.cpp | 22 mets-1.2.9/mets/vignettes/basic-dutils.Rmd | 16 mets-1.2.9/mets/vignettes/binomial-family.Rmd | 71 mets-1.2.9/mets/vignettes/binomial-twin.Rmd | 4 mets-1.2.9/mets/vignettes/binreg-ate.Rmd |only mets-1.2.9/mets/vignettes/binreg.Rmd |only mets-1.2.9/mets/vignettes/cifreg.Rmd | 37 mets-1.2.9/mets/vignettes/haplo-discrete-ttp.Rmd | 4 mets-1.2.9/mets/vignettes/interval-discrete-survival.Rmd |only mets-1.2.9/mets/vignettes/marginal-cox.Rmd | 7 mets-1.2.9/mets/vignettes/quantitative-twin.Rmd | 78 mets-1.2.9/mets/vignettes/quantitative-twin.org | 8 mets-1.2.9/mets/vignettes/recurrent-events.Rmd | 71 mets-1.2.9/mets/vignettes/time-to-event-family-studies-arev.Rmd |only mets-1.2.9/mets/vignettes/twostage-survival.Rmd | 170 148 files changed, 8080 insertions(+), 9049 deletions(-)
Title: Read and Write General Transit Feed Specification (GTFS) Files
Description: Tools for the development of packages related to General
Transit Feed Specification (GTFS) files. Establishes a standard for
representing GTFS feeds using R data types. Provides fast and flexible
functions to read and write GTFS feeds while sticking to this
standard. Defines a basic 'gtfs' class which is meant to be extended
by packages that depend on it. And offers utility functions that
support checking the structure of GTFS objects.
Author: Daniel Herszenhut [aut, cre] (<https://orcid.org/0000-0001-8066-1105>),
Flavio Poletti [aut],
Mark Padgham [aut],
Rafael H. M. Pereira [rev] (<https://orcid.org/0000-0003-2125-7465>),
Tom Buckley [rev],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Daniel Herszenhut <dhersz@gmail.com>
Diff between gtfsio versions 0.1.2 dated 2021-06-07 and 0.2.0 dated 2021-09-06
gtfsio-0.1.2/gtfsio/R/gtfs_print.R |only gtfsio-0.2.0/gtfsio/DESCRIPTION | 10 gtfsio-0.2.0/gtfsio/MD5 | 38 - gtfsio-0.2.0/gtfsio/NAMESPACE | 1 gtfsio-0.2.0/gtfsio/NEWS.md | 11 gtfsio-0.2.0/gtfsio/R/gtfs_methods.R |only gtfsio-0.2.0/gtfsio/R/gtfs_subset.R | 2 gtfsio-0.2.0/gtfsio/R/import_gtfs.R | 52 + gtfsio-0.2.0/gtfsio/R/new_gtfs.R | 8 gtfsio-0.2.0/gtfsio/README.md | 62 +- gtfsio-0.2.0/gtfsio/build/vignette.rds |binary gtfsio-0.2.0/gtfsio/inst/CITATION | 12 gtfsio-0.2.0/gtfsio/inst/doc/gtfsio.html | 534 ++++++++++++------- gtfsio-0.2.0/gtfsio/inst/tinytest/test_import_gtfs.R | 41 + gtfsio-0.2.0/gtfsio/inst/tinytest/test_new_gtfs.R | 11 gtfsio-0.2.0/gtfsio/inst/tinytest/test_summary.R |only gtfsio-0.2.0/gtfsio/man/gtfsio.Rd | 2 gtfsio-0.2.0/gtfsio/man/import_gtfs.Rd | 8 gtfsio-0.2.0/gtfsio/man/new_gtfs.Rd | 2 gtfsio-0.2.0/gtfsio/man/print.gtfs.Rd | 2 gtfsio-0.2.0/gtfsio/man/read_files.Rd | 7 gtfsio-0.2.0/gtfsio/man/summary.gtfs.Rd |only 22 files changed, 545 insertions(+), 258 deletions(-)
Title: Converting Transport Data from GTFS Format to GPS-Like Records
Description: Convert general transit feed specification (GTFS) data to global positioning system (GPS) records in 'data.table' format. It also has some functions to subset GTFS data in time and space and to convert both representations to simple feature format.
Author: Rafael H. M. Pereira [aut] (<https://orcid.org/0000-0003-2125-7465>),
Pedro R. Andrade [aut, cre] (<https://orcid.org/0000-0001-8675-4046>),
Joao Bazzo [aut] (<https://orcid.org/0000-0003-4536-5006>),
Marcin Stepniak [ctb],
Marcus Saraiva [ctb] (<https://orcid.org/0000-0001-6218-2338>),
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro R. Andrade <pedro.andrade@inpe.br>
Diff between gtfs2gps versions 1.5-0 dated 2021-08-13 and 1.5-4 dated 2021-09-06
gtfs2gps-1.5-0/gtfs2gps/tests/testthat/agency.txt |only gtfs2gps-1.5-0/gtfs2gps/tests/testthat/calendar.txt |only gtfs2gps-1.5-0/gtfs2gps/tests/testthat/poa.zip |only gtfs2gps-1.5-0/gtfs2gps/tests/testthat/routes.txt |only gtfs2gps-1.5-0/gtfs2gps/tests/testthat/shapes.txt |only gtfs2gps-1.5-0/gtfs2gps/tests/testthat/stop_times.txt |only gtfs2gps-1.5-0/gtfs2gps/tests/testthat/stops.txt |only gtfs2gps-1.5-0/gtfs2gps/tests/testthat/trips.txt |only gtfs2gps-1.5-4/gtfs2gps/DESCRIPTION | 12 ++-- gtfs2gps-1.5-4/gtfs2gps/MD5 | 30 +++------- gtfs2gps-1.5-4/gtfs2gps/NAMESPACE | 1 gtfs2gps-1.5-4/gtfs2gps/NEWS.md | 5 + gtfs2gps-1.5-4/gtfs2gps/R/gtfs2gps.R | 4 - gtfs2gps-1.5-4/gtfs2gps/R/zzz.R | 1 gtfs2gps-1.5-4/gtfs2gps/build/vignette.rds |binary gtfs2gps-1.5-4/gtfs2gps/inst/doc/intro_to_gtfs2gps.html | 4 - gtfs2gps-1.5-4/gtfs2gps/src/RcppExports.cpp | 5 + gtfs2gps-1.5-4/gtfs2gps/src/distance_calcs.cpp | 12 ++-- gtfs2gps-1.5-4/gtfs2gps/src/snap_points.cpp | 8 +- gtfs2gps-1.5-4/gtfs2gps/tests/testthat/test_gps_as_sflinestring.R | 2 20 files changed, 44 insertions(+), 40 deletions(-)
Title: Set Axis Break for 'ggplot2'
Description: An implementation of scale functions for setting axis breaks of a 'gg' plot.
Author: Guangchuang Yu [aut, cre, cph]
(<https://orcid.org/0000-0002-6485-8781>),
Shuangbin Xu [aut] (<https://orcid.org/0000-0003-3513-5362>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggbreak versions 0.0.4 dated 2021-08-14 and 0.0.5 dated 2021-09-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS.md | 4 ++++ R/method-grid-draw.R | 19 ++++++++++--------- build/vignette.rds |binary inst/doc/ggbreak.html | 4 ++-- 7 files changed, 27 insertions(+), 21 deletions(-)
Title: The Complete R6 Probability Distributions Interface
Description: An R6 object oriented distributions package. Unified
interface for 42 probability distributions and 11 kernels including
functionality for multiple scientific types. Additionally
functionality for composite distributions and numerical imputation.
Design patterns including wrappers and decorators are described in
Gamma et al. (1994, ISBN:0-201-63361-2). For quick reference of
probability distributions including d/p/q/r functions and results we
refer to McLaughlin, M. P. (2001). Additionally Devroye (1986,
ISBN:0-387-96305-7) for sampling the Dirichlet distribution, Gentle
(2009) <doi:10.1007/978-0-387-98144-4> for sampling the Multivariate
Normal distribution and Michael et al. (1976) <doi:10.2307/2683801>
for sampling the Wald distribution.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Peter Ruckdeschel [ctb] (Author of distr),
Matthias Kohl [ctb] (Author of distr),
Nurul Ain Toha [ctb],
Shen Chen [ctb],
Jordan Deenichin [ctb],
Chengyang Gao [ctb],
Chloe Zhaoyuan Gu [ctb],
Yunjie He [ctb],
Xiaowen Huang [ctb],
Shuhan Liu [ctb],
Runlong Yu [ctb],
Chijing Zeng [ctb],
Qian Zhou [ctb]
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between distr6 versions 1.5.6 dated 2021-07-17 and 1.6.0 dated 2021-09-06
distr6-1.5.6/distr6/R/ParameterSet.R |only distr6-1.5.6/distr6/R/ParameterSetCollection.R |only distr6-1.5.6/distr6/man/ParameterSet.Rd |only distr6-1.5.6/distr6/man/ParameterSetCollection.Rd |only distr6-1.5.6/distr6/man/as.ParameterSet.Rd |only distr6-1.5.6/distr6/man/as.data.table.ParameterSet.Rd |only distr6-1.5.6/distr6/man/cdf.Rd |only distr6-1.5.6/distr6/man/cdfAntiDeriv.Rd |only distr6-1.5.6/distr6/man/cdfPNorm.Rd |only distr6-1.5.6/distr6/man/cdfSquared2Norm.Rd |only distr6-1.5.6/distr6/man/cf.Rd |only distr6-1.5.6/distr6/man/correlation.Rd |only distr6-1.5.6/distr6/man/cumHazard.Rd |only distr6-1.5.6/distr6/man/decorators.Rd |only distr6-1.5.6/distr6/man/dmax.Rd |only distr6-1.5.6/distr6/man/dmin.Rd |only distr6-1.5.6/distr6/man/entropy.Rd |only distr6-1.5.6/distr6/man/genExp.Rd |only distr6-1.5.6/distr6/man/getParameterSupport.Rd |only distr6-1.5.6/distr6/man/getParameterValue.Rd |only distr6-1.5.6/distr6/man/hazard.Rd |only distr6-1.5.6/distr6/man/inf.Rd |only distr6-1.5.6/distr6/man/iqr.Rd |only distr6-1.5.6/distr6/man/kthmoment.Rd |only distr6-1.5.6/distr6/man/kurtosis.Rd |only distr6-1.5.6/distr6/man/kurtosisType.Rd |only distr6-1.5.6/distr6/man/liesInSupport.Rd |only distr6-1.5.6/distr6/man/liesInType.Rd |only distr6-1.5.6/distr6/man/mean.Distribution.Rd |only distr6-1.5.6/distr6/man/median.Distribution.Rd |only distr6-1.5.6/distr6/man/merge.ParameterSet.Rd |only distr6-1.5.6/distr6/man/mgf.Rd |only distr6-1.5.6/distr6/man/mode.Rd |only distr6-1.5.6/distr6/man/parameters.Rd |only distr6-1.5.6/distr6/man/pdf.Rd |only distr6-1.5.6/distr6/man/pdfPNorm.Rd |only distr6-1.5.6/distr6/man/pdfSquared2Norm.Rd |only distr6-1.5.6/distr6/man/pgf.Rd |only distr6-1.5.6/distr6/man/prec.Rd |only distr6-1.5.6/distr6/man/print.ParameterSet.Rd |only distr6-1.5.6/distr6/man/properties.Rd |only distr6-1.5.6/distr6/man/quantile.Distribution.Rd |only distr6-1.5.6/distr6/man/rand.Rd |only distr6-1.5.6/distr6/man/setParameterValue.Rd |only distr6-1.5.6/distr6/man/skewness.Rd |only distr6-1.5.6/distr6/man/skewnessType.Rd |only distr6-1.5.6/distr6/man/stdev.Rd |only distr6-1.5.6/distr6/man/strprint.Rd |only distr6-1.5.6/distr6/man/sub-.ParameterSet.Rd |only distr6-1.5.6/distr6/man/summary.Distribution.Rd |only distr6-1.5.6/distr6/man/sup.Rd |only distr6-1.5.6/distr6/man/support.Rd |only distr6-1.5.6/distr6/man/survival.Rd |only distr6-1.5.6/distr6/man/survivalAntiDeriv.Rd |only distr6-1.5.6/distr6/man/survivalPNorm.Rd |only distr6-1.5.6/distr6/man/symmetry.Rd |only distr6-1.5.6/distr6/man/testParameterSetCollection.Rd |only distr6-1.5.6/distr6/man/testParameterSetCollectionList.Rd |only distr6-1.5.6/distr6/man/traits.Rd |only distr6-1.5.6/distr6/man/type.Rd |only distr6-1.5.6/distr6/man/valueSupport.Rd |only distr6-1.5.6/distr6/man/variance.Rd |only distr6-1.5.6/distr6/man/variateForm.Rd |only distr6-1.5.6/distr6/man/workingSupport.Rd |only distr6-1.5.6/distr6/man/wrappedModels.Rd |only distr6-1.5.6/distr6/tests/testthat/test_ParameterSet.R |only distr6-1.5.6/distr6/tests/testthat/test_ParameterSetCollection.R |only distr6-1.5.6/distr6/tests/testthat/test_R62S3.R |only distr6-1.5.6/distr6/tests/testthat/test_asDistribution.R |only distr6-1.5.6/distr6/tests/testthat/test_assertions.R |only distr6-1.5.6/distr6/tests/testthat/test_cDistribution.R |only distr6-1.5.6/distr6/tests/testthat/test_checks.R |only distr6-1.5.6/distr6/tests/testthat/test_cpp_helpers.R |only distr6-1.5.6/distr6/tests/testthat/test_cpp_imputers.R |only distr6-1.5.6/distr6/tests/testthat/test_decorator.R |only distr6-1.5.6/distr6/tests/testthat/test_decorator_corestatistics.R |only distr6-1.5.6/distr6/tests/testthat/test_decorator_exoticstatistics.R |only distr6-1.5.6/distr6/tests/testthat/test_decorator_functionimputation.R |only distr6-1.5.6/distr6/tests/testthat/test_distr6news.R |only distr6-1.5.6/distr6/tests/testthat/test_distrSimulate.R |only distr6-1.5.6/distr6/tests/testthat/test_distributionHelpers.R |only distr6-1.5.6/distr6/tests/testthat/test_distribution_SDistribution.R |only distr6-1.5.6/distr6/tests/testthat/test_distribution_continuous.R |only distr6-1.5.6/distr6/tests/testthat/test_distribution_discrete.R |only distr6-1.5.6/distr6/tests/testthat/test_helpers.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_cosine.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_epanechnikov.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_logistic.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_normal.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_quartic.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_sigmoid.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_silverman.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_triangular.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_tricube.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_triweight.R |only distr6-1.5.6/distr6/tests/testthat/test_kernel_uniform.R |only distr6-1.5.6/distr6/tests/testthat/test_methods.R |only distr6-1.5.6/distr6/tests/testthat/test_mixturiseVector.R |only distr6-1.5.6/distr6/tests/testthat/test_plot.R |only distr6-1.5.6/distr6/tests/testthat/test_plot_lines.R |only distr6-1.5.6/distr6/tests/testthat/test_plot_qqplot.R |only distr6-1.5.6/distr6/tests/testthat/test_plot_vector.R |only distr6-1.5.6/distr6/tests/testthat/test_repDistribution.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Arcsine.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Bernoulli.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Beta.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_BetaNoncentral.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Binomial.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Categorical.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Cauchy.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_ChiSquared.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_ChiSquaredNoncentral.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Degenerate.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Dirichlet.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_DiscreteUniform.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Empirical.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_EmpiricalMV.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Erlang.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Exponential.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_FDistribution.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_FDistributionNoncentral.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Frechet.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Gamma.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Geometric.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Gompertz.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Gumbel.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Hypergeometric.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_InverseGamma.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Laplace.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_LogLogistic.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Logarithmic.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Logistic.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Lognormal.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Multinomial.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_MultivariateNormal.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_NegativeBinomial.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Normal.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Pareto.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Poisson.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Rayleigh.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_ShiftedLogLogistic.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_StudentT.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_StudentTNoncentral.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Triangular.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Uniform.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Wald.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_Weibull.R |only distr6-1.5.6/distr6/tests/testthat/test_sdistribution_WeightedDiscrete.R |only distr6-1.5.6/distr6/tests/testthat/test_simulateEmpirical.R |only distr6-1.5.6/distr6/tests/testthat/test_sugar.R |only distr6-1.5.6/distr6/tests/testthat/test_wrapper.R |only distr6-1.5.6/distr6/tests/testthat/test_wrapper_convolution.R |only distr6-1.5.6/distr6/tests/testthat/test_wrapper_huberize.R |only distr6-1.5.6/distr6/tests/testthat/test_wrapper_mixture.R |only distr6-1.5.6/distr6/tests/testthat/test_wrapper_product.R |only distr6-1.5.6/distr6/tests/testthat/test_wrapper_scale.R |only distr6-1.5.6/distr6/tests/testthat/test_wrapper_truncation.R |only distr6-1.5.6/distr6/tests/testthat/test_wrapper_vector.R |only distr6-1.6.0/distr6/DESCRIPTION | 44 distr6-1.6.0/distr6/MD5 | 482 +-- distr6-1.6.0/distr6/NAMESPACE | 76 distr6-1.6.0/distr6/NEWS.md | 10 distr6-1.6.0/distr6/R/Distribution.R | 509 ---- distr6-1.6.0/distr6/R/DistributionDecorator_CoreStatistics.R | 188 - distr6-1.6.0/distr6/R/DistributionDecorator_ExoticStatistics.R | 163 - distr6-1.6.0/distr6/R/Distribution_Kernel.R | 32 distr6-1.6.0/distr6/R/Distribution_SDistribution.R | 24 distr6-1.6.0/distr6/R/SDistribution_Arcsine.R | 17 distr6-1.6.0/distr6/R/SDistribution_Bernoulli.R | 22 distr6-1.6.0/distr6/R/SDistribution_Beta.R | 22 distr6-1.6.0/distr6/R/SDistribution_BetaNoncentral.R | 24 distr6-1.6.0/distr6/R/SDistribution_Binomial.R | 25 distr6-1.6.0/distr6/R/SDistribution_Categorical.R | 27 distr6-1.6.0/distr6/R/SDistribution_Cauchy.R | 1 distr6-1.6.0/distr6/R/SDistribution_ChiSquared.R | 21 distr6-1.6.0/distr6/R/SDistribution_ChiSquaredNoncentral.R | 21 distr6-1.6.0/distr6/R/SDistribution_Degenerate.R | 17 distr6-1.6.0/distr6/R/SDistribution_Dirichlet.R | 19 distr6-1.6.0/distr6/R/SDistribution_DiscreteUniform.R | 24 distr6-1.6.0/distr6/R/SDistribution_Empirical.R | 9 distr6-1.6.0/distr6/R/SDistribution_EmpiricalMultivariate.R | 9 distr6-1.6.0/distr6/R/SDistribution_Erlang.R | 1 distr6-1.6.0/distr6/R/SDistribution_Exponential.R | 1 distr6-1.6.0/distr6/R/SDistribution_FDistribution.R | 22 distr6-1.6.0/distr6/R/SDistribution_FDistributionNoncentral.R | 22 distr6-1.6.0/distr6/R/SDistribution_Frechet.R | 17 distr6-1.6.0/distr6/R/SDistribution_Gamma.R | 1 distr6-1.6.0/distr6/R/SDistribution_Geometric.R | 6 distr6-1.6.0/distr6/R/SDistribution_Gompertz.R | 1 distr6-1.6.0/distr6/R/SDistribution_Gumbel.R | 1 distr6-1.6.0/distr6/R/SDistribution_Hypergeometric.R | 35 distr6-1.6.0/distr6/R/SDistribution_InverseGamma.R | 1 distr6-1.6.0/distr6/R/SDistribution_Laplace.R | 1 distr6-1.6.0/distr6/R/SDistribution_Logarithmic.R | 1 distr6-1.6.0/distr6/R/SDistribution_Logistic.R | 1 distr6-1.6.0/distr6/R/SDistribution_Loglogistic.R | 1 distr6-1.6.0/distr6/R/SDistribution_Lognormal.R | 1 distr6-1.6.0/distr6/R/SDistribution_Multinomial.R | 23 distr6-1.6.0/distr6/R/SDistribution_MultivariateNormal.R | 18 distr6-1.6.0/distr6/R/SDistribution_NegBinomal.R | 22 distr6-1.6.0/distr6/R/SDistribution_Normal.R | 1 distr6-1.6.0/distr6/R/SDistribution_Pareto.R | 21 distr6-1.6.0/distr6/R/SDistribution_Poisson.R | 1 distr6-1.6.0/distr6/R/SDistribution_Rayleigh.R | 1 distr6-1.6.0/distr6/R/SDistribution_ShiftedLoglogistic.R | 40 distr6-1.6.0/distr6/R/SDistribution_StudentT.R | 1 distr6-1.6.0/distr6/R/SDistribution_StudentTNoncentral.R | 1 distr6-1.6.0/distr6/R/SDistribution_Triangular.R | 22 distr6-1.6.0/distr6/R/SDistribution_Uniform.R | 17 distr6-1.6.0/distr6/R/SDistribution_Wald.R | 1 distr6-1.6.0/distr6/R/SDistribution_WeightedDiscrete.R | 18 distr6-1.6.0/distr6/R/Wrapper.R | 40 distr6-1.6.0/distr6/R/Wrapper_Convolution.R | 5 distr6-1.6.0/distr6/R/Wrapper_HuberizedDistribution.R | 35 distr6-1.6.0/distr6/R/Wrapper_MixtureDistribution.R | 31 distr6-1.6.0/distr6/R/Wrapper_ProductDistribution.R | 4 distr6-1.6.0/distr6/R/Wrapper_TruncatedDistribution.R | 37 distr6-1.6.0/distr6/R/Wrapper_VectorDistribution.R | 161 - distr6-1.6.0/distr6/R/as.Distribution.R | 7 distr6-1.6.0/distr6/R/assertions.R | 57 distr6-1.6.0/distr6/R/c.Distribution.R | 63 distr6-1.6.0/distr6/R/distr6-package.R | 6 distr6-1.6.0/distr6/R/distrSimulate.R | 1 distr6-1.6.0/distr6/R/exkurtosisType.R | 26 distr6-1.6.0/distr6/R/getParameterSet.R | 1257 ++++------ distr6-1.6.0/distr6/R/helpers.R | 81 distr6-1.6.0/distr6/R/mixturiseVector.R | 7 distr6-1.6.0/distr6/R/rep.Distribution.R | 7 distr6-1.6.0/distr6/R/simulateEmpiricalDistribution.R | 2 distr6-1.6.0/distr6/R/skewType.R | 28 distr6-1.6.0/distr6/R/sugar.R | 2 distr6-1.6.0/distr6/R/zzz.R | 26 distr6-1.6.0/distr6/inst/doc/distr6.R | 20 distr6-1.6.0/distr6/inst/doc/distr6.html | 265 -- distr6-1.6.0/distr6/inst/doc/distr6.rmd | 28 distr6-1.6.0/distr6/man/Arcsine.Rd | 43 distr6-1.6.0/distr6/man/Bernoulli.Rd | 43 distr6-1.6.0/distr6/man/Beta.Rd | 43 distr6-1.6.0/distr6/man/BetaNoncentral.Rd | 43 distr6-1.6.0/distr6/man/Binomial.Rd | 43 distr6-1.6.0/distr6/man/Categorical.Rd | 43 distr6-1.6.0/distr6/man/ChiSquared.Rd | 43 distr6-1.6.0/distr6/man/ChiSquaredNoncentral.Rd | 43 distr6-1.6.0/distr6/man/Convolution.Rd | 2 distr6-1.6.0/distr6/man/Degenerate.Rd | 43 distr6-1.6.0/distr6/man/Dirichlet.Rd | 9 distr6-1.6.0/distr6/man/DiscreteUniform.Rd | 43 distr6-1.6.0/distr6/man/Distribution.Rd | 7 distr6-1.6.0/distr6/man/DistributionWrapper.Rd | 40 distr6-1.6.0/distr6/man/FDistribution.Rd | 43 distr6-1.6.0/distr6/man/FDistributionNoncentral.Rd | 43 distr6-1.6.0/distr6/man/Frechet.Rd | 43 distr6-1.6.0/distr6/man/Geometric.Rd | 4 distr6-1.6.0/distr6/man/HuberizedDistribution.Rd | 43 distr6-1.6.0/distr6/man/Hypergeometric.Rd | 9 distr6-1.6.0/distr6/man/MixtureDistribution.Rd | 8 distr6-1.6.0/distr6/man/Multinomial.Rd | 9 distr6-1.6.0/distr6/man/MultivariateNormal.Rd | 9 distr6-1.6.0/distr6/man/NegativeBinomial.Rd | 45 distr6-1.6.0/distr6/man/Pareto.Rd | 43 distr6-1.6.0/distr6/man/ProductDistribution.Rd | 4 distr6-1.6.0/distr6/man/ShiftedLoglogistic.Rd | 43 distr6-1.6.0/distr6/man/Triangular.Rd | 43 distr6-1.6.0/distr6/man/TruncatedDistribution.Rd | 43 distr6-1.6.0/distr6/man/Uniform.Rd | 43 distr6-1.6.0/distr6/man/VectorDistribution.Rd | 27 distr6-1.6.0/distr6/man/WeightedDiscrete.Rd | 43 distr6-1.6.0/distr6/man/distrSimulate.Rd | 3 distr6-1.6.0/distr6/man/dstr.Rd | 2 distr6-1.6.0/distr6/man/exkurtosisType.Rd | 3 distr6-1.6.0/distr6/man/simulateEmpiricalDistribution.Rd | 2 distr6-1.6.0/distr6/man/skewType.Rd | 5 distr6-1.6.0/distr6/man/sub-.VectorDistribution.Rd | 2 distr6-1.6.0/distr6/src/RcppExports.cpp | 5 distr6-1.6.0/distr6/tests/testthat/Rplots.pdf |only distr6-1.6.0/distr6/tests/testthat/helpers.R | 57 distr6-1.6.0/distr6/tests/testthat/test-asDistribution.R |only distr6-1.6.0/distr6/tests/testthat/test-assertions.R |only distr6-1.6.0/distr6/tests/testthat/test-cDistribution.R |only distr6-1.6.0/distr6/tests/testthat/test-checks.R |only distr6-1.6.0/distr6/tests/testthat/test-cpp-helpers.R |only distr6-1.6.0/distr6/tests/testthat/test-cpp-imputers.R |only distr6-1.6.0/distr6/tests/testthat/test-decorator-corestatistics.R |only distr6-1.6.0/distr6/tests/testthat/test-decorator-exoticstatistics.R |only distr6-1.6.0/distr6/tests/testthat/test-decorator-functionimputation.R |only distr6-1.6.0/distr6/tests/testthat/test-decorator.R |only distr6-1.6.0/distr6/tests/testthat/test-distrSimulate.R |only distr6-1.6.0/distr6/tests/testthat/test-distribution-SDistribution.R |only distr6-1.6.0/distr6/tests/testthat/test-distributionHelpers.R |only distr6-1.6.0/distr6/tests/testthat/test-helpers.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-cosine.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-epanechnikov.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-logistic.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-normal.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-quartic.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-sigmoid.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-silverman.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-triangular.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-tricube.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-triweight.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel-uniform.R |only distr6-1.6.0/distr6/tests/testthat/test-kernel.R |only distr6-1.6.0/distr6/tests/testthat/test-methods.R |only distr6-1.6.0/distr6/tests/testthat/test-mixturiseVector.R |only distr6-1.6.0/distr6/tests/testthat/test-plot-lines.R |only distr6-1.6.0/distr6/tests/testthat/test-plot-qqplot.R |only distr6-1.6.0/distr6/tests/testthat/test-plot-vector.R |only distr6-1.6.0/distr6/tests/testthat/test-plot.R |only distr6-1.6.0/distr6/tests/testthat/test-repDistribution.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Arcsine.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Bernoulli.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Beta.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-BetaNoncentral.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Binomial.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Categorical.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Cauchy.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-ChiSquared.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-ChiSquaredNoncentral.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Degenerate.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Dirichlet.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-DiscreteUniform.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Empirical.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-EmpiricalMV.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Erlang.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Exponential.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-FDistribution.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-FDistributionNoncentral.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Frechet.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Gamma.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Geometric.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Gompertz.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Gumbel.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Hypergeometric.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-InverseGamma.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Laplace.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-LogLogistic.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Logarithmic.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Logistic.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Lognormal.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Multinomial.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-MultivariateNormal.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-NegativeBinomial.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Normal.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Pareto.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Poisson.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Rayleigh.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-ShiftedLogLogistic.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-StudentT.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-StudentTNoncentral.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Triangular.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Uniform.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Wald.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-Weibull.R |only distr6-1.6.0/distr6/tests/testthat/test-sdistribution-WeightedDiscrete.R |only distr6-1.6.0/distr6/tests/testthat/test-simulateEmpirical.R |only distr6-1.6.0/distr6/tests/testthat/test-sugar.R |only distr6-1.6.0/distr6/tests/testthat/test-wrapper-convolution.R |only distr6-1.6.0/distr6/tests/testthat/test-wrapper-huberize.R |only distr6-1.6.0/distr6/tests/testthat/test-wrapper-mixture.R |only distr6-1.6.0/distr6/tests/testthat/test-wrapper-product.R |only distr6-1.6.0/distr6/tests/testthat/test-wrapper-scale.R |only distr6-1.6.0/distr6/tests/testthat/test-wrapper-truncation.R |only distr6-1.6.0/distr6/tests/testthat/test-wrapper-vector.R |only distr6-1.6.0/distr6/tests/testthat/test-wrapper.R |only distr6-1.6.0/distr6/vignettes/distr6.rmd | 28 366 files changed, 1856 insertions(+), 3566 deletions(-)
Title: Compact Standard for Australian Phone Numbers
Description: Phone numbers are often represented as strings because there
is no obvious and suitable native representation for them. This leads
to high memory use and a lack of standard representation. The package
provides integer representation of Australian phone numbers with optional
raw vector calling code. The package name is an extension of 'au' and 'ph'.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between dauphin versions 0.2.0 dated 2021-09-03 and 0.3.0 dated 2021-09-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/standard_mobile.R | 4 ++-- src/dauphin.h | 1 + src/init.c | 8 ++++---- 5 files changed, 14 insertions(+), 13 deletions(-)
Title: Database Interface and 'MariaDB' Driver
Description: Implements a 'DBI'-compliant interface to 'MariaDB'
(<https://mariadb.org/>) and 'MySQL' (<https://www.mysql.com/>)
databases.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Jeroen Ooms [aut] (<https://orcid.org/0000-0002-4035-0289>),
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RMariaDB versions 1.1.1 dated 2021-04-13 and 1.1.2 dated 2021-09-06
DESCRIPTION | 14 ++++----- LICENSE |only MD5 | 24 ++++++++-------- NEWS.md | 23 +++++++++++++++ R/connect.R | 41 ++++++++++++++++++++++++--- R/table.R | 4 +- README.md | 51 ++++++++++++++++++---------------- configure | 16 +++++++++- man/dbConnect-MariaDBDriver-method.Rd | 28 +++++++++++++++--- src/Makevars.ucrt |only src/Makevars.win | 2 - src/MariaBinding.cpp | 6 ++-- src/RcppExports.cpp | 5 +++ tools/tz.sql | 17 ----------- 14 files changed, 156 insertions(+), 75 deletions(-)
Title: Simple Methods for Calculating Value at Risk and Expected
Shortfall
Description: Enables the user to calculate Value at Risk (VaR)
and Expected Shortfall (ES) by means of various types of historical
simulation. Currently plain-, age-, volatility-weighted- and filtered
historical simulation are implemented in this package. Volatility weighting
can be carried out via an exponentially weighted moving average model
(EWMA) or other GARCH-type models. The methods of the package are described in
Gurrola-Perez, P. and Murphy, D. (2015)
<https://EconPapers.repec.org/RePEc:boe:boeewp:0525>.
Author: Sebastian Letmathe [aut, cre] (Paderborn University, Germany)
Maintainer: Sebastian Letmathe <sebastian.letmathe@uni-paderborn.de>
Diff between quarks versions 1.0.7 dated 2021-09-02 and 1.0.9 dated 2021-09-06
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 10 +++++++++- R/hs.R | 3 ++- R/rollcast.R | 25 +++++++++++++------------ README.md | 4 ++-- man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary 12 files changed, 40 insertions(+), 30 deletions(-)
Title: Extended Structural Equation Modelling
Description: Create structural equation models that can be manipulated programmatically.
Models may be specified with matrices or paths (LISREL or RAM)
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
Fit functions include full information maximum likelihood, maximum likelihood, and weighted least squares.
equations, state space, and many others.
Support and advanced package binaries available at <http://openmx.ssri.psu.edu>.
The software is described in Neale, Hunter, Pritikin, Zahery, Brick,
Kirkpatrick, Estabrook, Bates, Maes, & Boker (2016) <doi:10.1007/s11336-014-9435-8>.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Ben Goodrich [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph],
Stefan Wilhelm [cph],
Sarah Medland [cph],
Carl F. Falk [cph],
Matt Keller [cph],
Manjunath B G [cph],
The Regents of the University of California [cph],
Lester Ingber [cph],
Wong Shao Voon [cph],
Juan Palacios [cph],
Jiang Yang [cph],
Gael Guennebaud [cph],
Jitse Niesen [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.19.6 dated 2021-06-28 and 2.19.8 dated 2021-09-06
DESCRIPTION | 8 MD5 | 122 +++---- R/MxAlgebraFunctions.R | 18 - R/MxCompare.R | 5 R/MxCompute.R | 14 R/MxData.R | 160 +++++----- R/MxDataWLS.R | 4 R/MxExpectationLISREL.R | 2 R/MxExpectationNormal.R | 2 R/MxExpectationRAM.R | 5 R/MxFitFunctionWLS.R | 46 +- R/MxInterval.R | 30 - R/MxModelFunctions.R | 6 R/MxOptions.R | 2 R/MxPath.R | 9 R/MxRun.R | 6 R/MxRunHelperFunctions.R | 48 +-- R/MxThreshold.R | 14 R/MxVersion.R | 2 R/sysdata.rda |binary README.md | 2 build/OpenMx.pdf |binary demo/BivariateSaturated.R | 3 demo/BivariateSaturated_MatrixRaw.R | 2 inst/CITATION | 2 inst/models/nightly/AnalyticGradientTest.R | 7 inst/models/nightly/BootLRT.R | 6 inst/models/nightly/CSOLNP_segfault_regression_test--unidentifed_EFA.R | 26 - inst/models/nightly/MIMIC.R | 23 - inst/models/nightly/ifa-bifactor.R | 2 inst/models/nightly/ifa-ms.R | 3 inst/models/nightly/startsTestMissing.R | 2 inst/models/passing/NelderMeadTest.R | 4 inst/models/passing/SaturatedWLSTest.R | 2 inst/models/passing/WarmStartTest.R | 7 inst/models/passing/exoPredWLS.R | 14 inst/models/passing/exoPredWLS2.R | 13 inst/models/passing/maes1998.R | 2 inst/models/passing/regression.R |only inst/models/passing/startingValues2.R | 36 ++ man/mxComputeCheckpoint.Rd | 5 man/mxData.Rd | 7 man/mxDescribeDataWLS.Rd | 2 src/Compute.cpp | 76 +++- src/LoadDataAPI.h | 23 - src/RAMInternal.h | 2 src/fitMultigroup.cpp | 2 src/omxData.cpp | 15 src/omxExpectation.cpp | 8 src/omxExpectation.h | 2 src/omxFitFunction.cpp | 2 src/omxGREMLfitfunction.cpp | 68 ++-- src/omxLISRELExpectation.cpp | 25 - src/omxRAMExpectation.cpp | 49 +-- src/omxState.cpp | 47 ++ src/omxState.h | 7 src/omxWLSFitFunction.cpp | 2 tests/testthat/test-WLS-acov.R | 6 tests/testthat/test-mxsave.R | 5 tests/testthat/test-naAction.R | 2 tools/covr.R | 2 tools/test | 2 tools/vignetter |only 63 files changed, 583 insertions(+), 435 deletions(-)
Title: Mittag-Leffler Family of Distributions
Description: Implements the Mittag-Leffler function, distribution,
random variate generation, and estimation. Based on the Laplace-Inversion
algorithm by Garrappa, R. (2015) <doi:10.1137/140971191>.
Author: Katharina Hees [aut],
Peter Straka [aut, cre],
Gurtek Gill [aut],
Roberto Garrappa [ctb]
Maintainer: Peter Straka <straka.ps@gmail.com>
Diff between MittagLeffleR versions 0.3.0 dated 2018-04-25 and 0.4.1 dated 2021-09-06
DESCRIPTION | 28 +-- MD5 | 37 ++- NEWS.md | 4 R/MLMLE.R | 15 - R/MittagLefflerDist.R | 49 +++-- R/MittagLefflerFunc.R | 2 R/logMoments.R | 8 README.md | 42 +++- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 14 - inst/doc/MLdist.R | 10 - inst/doc/MLdist.html | 398 ++++++++++++++----------------------------- inst/doc/parametrisation.R | 6 inst/doc/parametrisation.pdf |binary inst/doc/probsNquantiles.pdf |binary man/MittagLeffleR-package.Rd | 10 - man/MittagLeffleR.Rd | 16 - man/logMomentEstimator.Rd | 8 man/mlf.Rd | 2 20 files changed, 278 insertions(+), 371 deletions(-)
Title: Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Description: Efficient methods for Bayesian inference of state space models
via particle Markov chain Monte Carlo (MCMC) and MCMC based on parallel
importance sampling type weighted estimators
(Vihola, Helske, and Franks, 2020, <doi:10.1111/sjos.12492>).
Gaussian, Poisson, binomial, negative binomial, and Gamma
observation densities and basic stochastic volatility models
with linear-Gaussian state dynamics,
as well as general non-linear Gaussian models and discretised
diffusion models are supported.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>),
Matti Vihola [aut] (<https://orcid.org/0000-0002-8041-7222>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 1.1.5 dated 2021-07-10 and 1.1.6 dated 2021-09-06
DESCRIPTION | 13 MD5 | 181 - NAMESPACE | 2 NEWS | 465 ++-- R/approx.R | 163 - R/as.data.frame.mcmc_output.R | 171 - R/as_bssm.R | 293 +- R/bootstrap_filter.R | 294 +- R/bssm-package.R | 172 - R/check_arguments.R | 498 +++- R/ekpf_filter.R | 117 - R/importance_sample.R | 110 - R/init_mode.R | 61 R/kfilter.R | 222 +- R/loglik.R | 298 +- R/model_type.R | 32 R/models.R | 3279 +++++++++++++++----------------- R/nlg_example_models.R |only R/particle_smoother.R | 449 ++-- R/post_correction.R | 502 ++-- R/predict.R | 613 +++-- R/print_mcmc.R | 616 +++--- R/priors.R | 129 - R/run_mcmc.R | 1494 +++++++------- R/sim_smoother.R | 89 R/smoother.R | 204 + R/zzz.R | 6 inst/doc/bssm.html | 6 inst/doc/growth_model.html | 16 inst/doc/sde_model.html | 4 man/ar1_lg.Rd | 6 man/ar1_ng.Rd | 34 man/as.data.frame.mcmc_output.Rd | 11 man/as_bssm.Rd | 8 man/bootstrap_filter.Rd | 14 man/bsm_lg.Rd | 18 man/bsm_ng.Rd | 32 man/bssm.Rd | 26 man/drownings.Rd | 3 man/ekf_smoother.Rd | 15 man/ekpf_filter.Rd | 36 man/exchange.Rd | 4 man/expand_sample.Rd | 18 man/gaussian_approx.Rd | 16 man/importance_sample.Rd | 18 man/kfilter.Rd | 11 man/logLik.Rd | 3 man/logLik.nongaussian.Rd | 24 man/logLik.ssm_nlg.Rd | 22 man/logLik.ssm_sde.Rd | 3 man/nlg_example_models.Rd |only man/particle_smoother.Rd | 40 man/post_correct.Rd | 39 man/predict.mcmc_output.Rd | 21 man/priors.Rd | 21 man/run_mcmc.Rd | 3 man/run_mcmc.ssm_nlg.Rd | 38 man/run_mcmc.ssm_sde.Rd | 33 man/run_mcmc_g.Rd | 33 man/run_mcmc_ng.Rd | 60 man/sim_smoother.Rd | 12 man/smoother.Rd | 3 man/ssm_mlg.Rd | 47 man/ssm_mng.Rd | 83 man/ssm_nlg.Rd | 49 man/ssm_sde.Rd | 15 man/ssm_ulg.Rd | 56 man/ssm_ung.Rd | 58 man/suggest_N.Rd | 37 man/summary.mcmc_output.Rd | 19 man/svm.Rd | 15 src/R_ekpf.cpp | 5 src/R_postcorrection.cpp | 14 src/RcppExports.cpp | 5 src/distr_consts.cpp | 4 src/model_ar1_lg.cpp | 16 src/model_ar1_ng.cpp | 10 src/model_bsm_ng.cpp | 2 src/model_ssm_mng.cpp | 34 src/model_ssm_nlg.cpp | 10 src/model_ssm_ung.cpp | 23 tests/testthat/test_approx.R | 305 +- tests/testthat/test_as_bssm.R | 93 tests/testthat/test_as_data_frame.R |only tests/testthat/test_basics.R | 376 +-- tests/testthat/test_bootstrap_filter.R | 196 + tests/testthat/test_ekpf.R |only tests/testthat/test_is.R | 55 tests/testthat/test_mcmc.R | 434 +++- tests/testthat/test_models.R | 191 + tests/testthat/test_particle_smoother.R |only tests/testthat/test_post_correct.R |only tests/testthat/test_predict.R |only tests/testthat/test_sde.R |only tests/testthat/test_sim_smoother.R |only vignettes/ssm_nlg_template.cpp | 322 +-- 96 files changed, 7308 insertions(+), 6290 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-06 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-13 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-22 0.2.4
2020-05-07 0.2.3
2020-05-02 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-16 1.2.6
2020-09-14 1.2.4
2020-06-12 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-27 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-12 1.1.1
2020-07-18 1.1.0
2019-11-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-11 1.1.3
2021-04-25 1.1.2
2021-03-29 1.1.1
2021-03-02 1.1.0
2020-12-04 1.0.1
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for pitch tracking, spectral analysis, audio segmentation, self-similarity
matrices, modulation spectra, morphing, etc., as well as interactive web
apps for manually corrected pitch tracking and formant measurement.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <rty.anik@rambler.ru>
Diff between soundgen versions 2.2.0 dated 2021-08-07 and 2.3.0 dated 2021-09-06
DESCRIPTION | 8 MD5 | 125 +-- NAMESPACE | 3 NEWS | 24 R/amplitude.R | 1 R/analyze.R | 110 +- R/audSpec.R | 145 ++- R/compareSounds.R | 6 R/filters.R | 11 R/formants.R | 1 R/loudness.R | 7 R/modulationSpectrum.R | 1 R/pitchTrackers.R | 314 ++++++- R/presets.R | 11 R/resample.R | 35 R/segment.R | 7 R/smoothContours.R | 50 - R/soundgen.R | 4 R/spectrogram.R | 63 + R/surprisal.R |only R/utilities_math.R | 33 R/utilities_pitch_postprocessing.R | 237 +++-- README.md | 56 - build/vignette.rds |binary data/defaults_analyze.rda |binary data/defaults_analyze_pitchCand.rda |binary inst/doc/acoustic_analysis.R | 183 ++-- inst/doc/acoustic_analysis.Rmd | 381 ++++----- inst/doc/acoustic_analysis.html | 1081 +++++++++++++------------- inst/doc/sound_generation.html | 1448 +++++++++++++++++------------------- inst/shiny/pitch_app/server.R | 158 ++- inst/shiny/pitch_app/ui.R | 43 - man/addPitchCands.Rd | 1 man/analyze.Rd | 52 - man/analyzeFolder.Rd | 1 man/audSpectrogram.Rd | 57 - man/bandpass.Rd | 6 man/dot-analyze.Rd | 9 man/dot-audSpectrogram.Rd | 21 man/dot-bandpass.Rd | 2 man/dot-getLoudness.Rd | 3 man/dot-getPitchZc.Rd |only man/dot-getSurprisal.Rd |only man/dot-resample.Rd | 4 man/dot-spectrogram.Rd | 15 man/drawContour.Rd | 3 man/figures/README-synthsesis-1.png |binary man/figures/s.mp3 |only man/filled.contour.mod.Rd | 1 man/getLoudness.Rd | 3 man/getLoudnessFolder.Rd | 1 man/getPitchSpec.Rd | 41 - man/getPitchZc.Rd |only man/getRMSFolder.Rd | 1 man/getSmoothContour.Rd | 13 man/getSurprisal.Rd |only man/getSurprisal_matrix.Rd |only man/getSurprisal_vector.Rd |only man/hz2mel.Rd |only man/modulationSpectrumFolder.Rd | 1 man/pathfinder.Rd | 6 man/pathfinding_fast.Rd | 28 man/plotSpec.Rd | 16 man/resample.Rd | 8 man/segmentFolder.Rd | 1 man/spectrogram.Rd | 19 man/spectrogramFolder.Rd | 1 vignettes/acoustic_analysis.Rmd | 381 ++++----- 68 files changed, 2930 insertions(+), 2311 deletions(-)
Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between wnl versions 0.6.2 dated 2021-08-07 and 0.6.3 dated 2021-09-06
DESCRIPTION | 6 ++--- MD5 | 10 ++++---- R/pComp.R | 57 ++++++++++++++++++++++++------------------------ inst/NEWS.Rd | 7 +++++ inst/doc/wnl-manual.pdf |binary man/pComp.Rd | 14 +++++------ 6 files changed, 51 insertions(+), 43 deletions(-)
Title: World Magnetic Model
Description: Calculate magnetic field at a given location and time according to
the World Magnetic Model (WMM). Both the main field and secular variation
components are returned. This functionality is useful for physicists and
geophysicists who need orthogonal components from WMM. Currently, this package
supports annualized time inputs between 2000 and 2025. If desired, users can
specify which WMM version to use, e.g., the original WMM2015 release or the
recent out-of-cycle WMM2015 release. Methods used to implement WMM, including
the Gauss coefficients for each release, are described in the following
publications: Chulliat et al (2020) <doi:10.25923/ytk1-yx35>,
Chulliat et al (2019) <doi:10.25921/xhr3-0t19>,
Chulliat et al (2015) <doi:10.7289/V5TB14V7>,
Maus et al (2010) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/WMM2010_Report.pdf>,
McLean et al (2004) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/TRWMM_2005.pdf>,
and Macmillian et al (2000) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/wmm2000.pdf>.
Author: Will Frierson [aut, cre]
Maintainer: Will Frierson <will.frierson@gmail.com>
Diff between wmm versions 1.1.0 dated 2021-03-17 and 1.1.1 dated 2021-09-06
wmm-1.1.0/wmm/inst/extdata/WMM2000.csv |only wmm-1.1.0/wmm/inst/extdata/WMM2005.csv |only wmm-1.1.0/wmm/inst/extdata/WMM2010.csv |only wmm-1.1.0/wmm/inst/extdata/WMM2015.csv |only wmm-1.1.0/wmm/inst/extdata/WMM2015v2.csv |only wmm-1.1.0/wmm/inst/extdata/WMM2020.csv |only wmm-1.1.1/wmm/DESCRIPTION | 7 - wmm-1.1.1/wmm/MD5 | 20 ++--- wmm-1.1.1/wmm/NEWS.md | 4 + wmm-1.1.1/wmm/R/functions_wmm.R | 17 ++++ wmm-1.1.1/wmm/README.md | 8 +- wmm-1.1.1/wmm/man/GetMagneticFieldWMM.Rd | 2 wmm-1.1.1/wmm/tests/testthat/setup.R |only wmm-1.1.1/wmm/tests/testthat/test-time-options.R |only wmm-1.1.1/wmm/tests/testthat/testWMM.R | 89 ++++++++++++++--------- 15 files changed, 94 insertions(+), 53 deletions(-)
Title: Interaction with "RevBayes" in R
Description: Interaction with "RevBayes" via R. Objects created in "RevBayes" can be passed into the R environment, and many types can be converted into similar R objects. To download "RevBayes", go to <https://revbayes.github.io/download>.
Author: Caleb Charpentier [aut, cre],
April Wright [aut]
Maintainer: Caleb Charpentier <caleb.charpentier@selu.edu>
Diff between Revticulate versions 0.2.0 dated 2021-08-20 and 0.3.0 dated 2021-09-06
Revticulate-0.2.0/Revticulate/TODO |only Revticulate-0.2.0/Revticulate/build |only Revticulate-0.2.0/Revticulate/inst/doc |only Revticulate-0.2.0/Revticulate/vignettes |only Revticulate-0.3.0/Revticulate/DESCRIPTION | 7 Revticulate-0.3.0/Revticulate/LICENSE | 4 Revticulate-0.3.0/Revticulate/MD5 | 122 -- Revticulate-0.3.0/Revticulate/NAMESPACE | 36 Revticulate-0.3.0/Revticulate/R/CallRev.R | 266 ++--- Revticulate-0.3.0/Revticulate/R/ClearRev.R | 98 +- Revticulate-0.3.0/Revticulate/R/CoerceRev.R | 462 +++++----- Revticulate-0.3.0/Revticulate/R/InitRev.R | 88 - Revticulate-0.3.0/Revticulate/R/KnitRev.R | 36 Revticulate-0.3.0/Revticulate/R/RepRev.R | 220 ++-- Revticulate-0.3.0/Revticulate/R/Str_C_Operator.R | 28 Revticulate-0.3.0/Revticulate/R/doRev.R | 118 +- Revticulate-0.3.0/Revticulate/R/findRev.R | 118 +- Revticulate-0.3.0/Revticulate/R/getRevHistory.R | 38 Revticulate-0.3.0/Revticulate/R/getRevObj.R | 32 Revticulate-0.3.0/Revticulate/R/getRevVars.R | 58 - Revticulate-0.3.0/Revticulate/README.md | 286 +++--- Revticulate-0.3.0/Revticulate/inst/extdata/Cinctans.nex | 90 - Revticulate-0.3.0/Revticulate/man/callRev.Rd | 102 +- Revticulate-0.3.0/Revticulate/man/clearRev.Rd | 52 - Revticulate-0.3.0/Revticulate/man/coerceRev.Rd | 56 - Revticulate-0.3.0/Revticulate/man/doRev.Rd | 46 Revticulate-0.3.0/Revticulate/man/findRev.Rd | 52 - Revticulate-0.3.0/Revticulate/man/getRevHistory.Rd | 28 Revticulate-0.3.0/Revticulate/man/getRevObj.Rd | 40 Revticulate-0.3.0/Revticulate/man/getRevVars.Rd | 56 - Revticulate-0.3.0/Revticulate/man/initRev.Rd | 52 - Revticulate-0.3.0/Revticulate/man/knitRev.Rd | 28 Revticulate-0.3.0/Revticulate/man/repRev.Rd | 102 +- Revticulate-0.3.0/Revticulate/man/stringpaste.Rd | 44 Revticulate-0.3.0/Revticulate/tests/testthat/test_callRev.R | 71 - Revticulate-0.3.0/Revticulate/tests/testthat/test_clearRev.R | 63 - Revticulate-0.3.0/Revticulate/tests/testthat/test_coerceRev.R | 80 - Revticulate-0.3.0/Revticulate/tests/testthat/test_doRev.R | 52 - Revticulate-0.3.0/Revticulate/tests/testthat/test_getRevHistory.R | 44 Revticulate-0.3.0/Revticulate/tests/testthat/test_getRevObj.R | 102 +- Revticulate-0.3.0/Revticulate/tests/testthat/test_getRevVars.R | 59 - Revticulate-0.3.0/Revticulate/tests/testthat/test_initRev.R | 54 - Revticulate-0.3.0/Revticulate/tests/testthat/test_knitRev.R | 34 43 files changed, 1645 insertions(+), 1679 deletions(-)