Title: Plot and Manipulate Multigraphs
Description: Functions to plot and manipulate multigraphs, signed and valued graphs, bipartite graphs, multilevel graphs, and Cayley graphs with various layout options. Please note that this package still under a devel version.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multigraph versions 0.95 dated 2021-08-09 and 0.96 dated 2021-09-10
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/multigraph.R | 29 ++++++++++++++++++++++------- man/multigraph-package.Rd | 8 ++++---- 4 files changed, 34 insertions(+), 19 deletions(-)
Title: Analytics, Data Mining & Machine Learning Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine learning
tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
Exploratory, and Scrapper, it helps the analyst or data scientist to get quick and robust
results, without the need of repetitive coding or extensive programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.0.1 dated 2021-06-09 and 5.0.2 dated 2021-09-10
lares-5.0.1/lares/R/facial_recognition.R |only lares-5.0.1/lares/inst/docs/model_template.R |only lares-5.0.1/lares/inst/fxs_used.R |only lares-5.0.1/lares/man/figures/lares_logo.png |only lares-5.0.1/lares/man/gg_pie.Rd |only lares-5.0.2/lares/DESCRIPTION | 24 lares-5.0.2/lares/MD5 | 422 +++---- lares-5.0.2/lares/NAMESPACE | 11 lares-5.0.2/lares/R/apis.R | 23 lares-5.0.2/lares/R/audio.R | 124 +- lares-5.0.2/lares/R/cache.R | 49 lares-5.0.2/lares/R/checks.R | 91 - lares-5.0.2/lares/R/clusters.R | 271 ++-- lares-5.0.2/lares/R/colour_palettes.R | 288 ++--- lares-5.0.2/lares/R/confidence.R | 52 lares-5.0.2/lares/R/correlations.R | 431 ++++--- lares-5.0.2/lares/R/cran.R |only lares-5.0.2/lares/R/credentials.R | 49 lares-5.0.2/lares/R/crosstab.R | 71 - lares-5.0.2/lares/R/currency.R | 51 lares-5.0.2/lares/R/dalex_explainers.R | 137 +- lares-5.0.2/lares/R/dataframe_str.R | 178 +-- lares-5.0.2/lares/R/datasets.R | 16 lares-5.0.2/lares/R/dim_reduction.R |only lares-5.0.2/lares/R/distribution.R | 694 ++++++------ lares-5.0.2/lares/R/dropbox.R | 65 - lares-5.0.2/lares/R/encoding.R |only lares-5.0.2/lares/R/facebook.R | 761 +++++++------ lares-5.0.2/lares/R/forecasting.R | 242 ++-- lares-5.0.2/lares/R/frequencies.R | 734 +++++++------ lares-5.0.2/lares/R/geodata.R | 116 +- lares-5.0.2/lares/R/google_analytics.R | 38 lares-5.0.2/lares/R/google_sheets.R | 80 - lares-5.0.2/lares/R/google_trends.R | 125 +- lares-5.0.2/lares/R/hubspot.R | 62 - lares-5.0.2/lares/R/hubspot_f1.R | 60 - lares-5.0.2/lares/R/lares.R | 57 - lares-5.0.2/lares/R/lasso.R | 145 +- lares-5.0.2/lares/R/linkedin.R | 31 lares-5.0.2/lares/R/mails.R | 56 - lares-5.0.2/lares/R/missings.R | 106 + lares-5.0.2/lares/R/model_functions.R | 690 +++++++----- lares-5.0.2/lares/R/model_metrics.R | 489 ++++---- lares-5.0.2/lares/R/model_plots.R | 1496 +++++++++++++++------------ lares-5.0.2/lares/R/model_predict.R | 126 +- lares-5.0.2/lares/R/model_preprocessing.R | 182 ++- lares-5.0.2/lares/R/object_detection.R | 38 lares-5.0.2/lares/R/onehotencoding.R | 446 ++++---- lares-5.0.2/lares/R/other_functions.R | 1025 ++++++++++-------- lares-5.0.2/lares/R/other_plots.R | 943 +++-------------- lares-5.0.2/lares/R/outliers.R | 110 + lares-5.0.2/lares/R/querieSQL.R | 9 lares-5.0.2/lares/R/rtistry.R | 17 lares-5.0.2/lares/R/scrabble.R | 217 ++- lares-5.0.2/lares/R/shapley.R | 201 ++- lares-5.0.2/lares/R/slack.R | 31 lares-5.0.2/lares/R/statusbar.R | 47 lares-5.0.2/lares/R/stocks.R | 1132 +++++++++++--------- lares-5.0.2/lares/R/sudoku.R | 62 - lares-5.0.2/lares/R/surveys.R | 34 lares-5.0.2/lares/R/text_mining.R | 333 +++--- lares-5.0.2/lares/R/theme_lares.R | 207 ++- lares-5.0.2/lares/R/tictoc.R | 68 - lares-5.0.2/lares/R/trees.R | 157 ++ lares-5.0.2/lares/R/twitter.R | 9 lares-5.0.2/lares/R/typeform.R | 28 lares-5.0.2/lares/R/update.R | 14 lares-5.0.2/lares/R/x2y.R | 269 ++-- lares-5.0.2/lares/R/zzz.R | 31 lares-5.0.2/lares/README.md | 11 lares-5.0.2/lares/build |only lares-5.0.2/lares/inst/_pkgdown.yml |only lares-5.0.2/lares/inst/doc |only lares-5.0.2/lares/man/ROC.Rd | 9 lares-5.0.2/lares/man/autoline.Rd | 5 lares-5.0.2/lares/man/balance_data.Rd | 2 lares-5.0.2/lares/man/bindfiles.Rd | 2 lares-5.0.2/lares/man/bring_api.Rd | 7 lares-5.0.2/lares/man/cache_write.Rd | 13 lares-5.0.2/lares/man/categ_reducer.Rd | 8 lares-5.0.2/lares/man/check_opts.Rd | 26 lares-5.0.2/lares/man/ci_var.Rd | 2 lares-5.0.2/lares/man/cleanNames.Rd | 6 lares-5.0.2/lares/man/cleanText.Rd | 2 lares-5.0.2/lares/man/clusterKmeans.Rd | 49 lares-5.0.2/lares/man/clusterOptimalK.Rd | 6 lares-5.0.2/lares/man/clusterVisualK.Rd | 4 lares-5.0.2/lares/man/conf_mat.Rd | 10 lares-5.0.2/lares/man/corr.Rd | 18 lares-5.0.2/lares/man/corr_cross.Rd | 8 lares-5.0.2/lares/man/corr_var.Rd | 14 lares-5.0.2/lares/man/cran_logs.Rd |only lares-5.0.2/lares/man/daily_portfolio.Rd | 2 lares-5.0.2/lares/man/dalex_local.Rd | 2 lares-5.0.2/lares/man/dalex_variable.Rd | 4 lares-5.0.2/lares/man/date_feats.Rd | 25 lares-5.0.2/lares/man/df_str.Rd | 4 lares-5.0.2/lares/man/dfr.Rd | 4 lares-5.0.2/lares/man/dft.Rd | 12 lares-5.0.2/lares/man/dist2d.Rd | 4 lares-5.0.2/lares/man/distr.Rd | 23 lares-5.0.2/lares/man/errors.Rd | 2 lares-5.0.2/lares/man/export_plot.Rd | 60 - lares-5.0.2/lares/man/export_results.Rd | 8 lares-5.0.2/lares/man/fb_accounts.Rd | 2 lares-5.0.2/lares/man/fb_ads.Rd | 10 lares-5.0.2/lares/man/fb_creatives.Rd | 4 lares-5.0.2/lares/man/fb_insights.Rd | 60 - lares-5.0.2/lares/man/fb_posts.Rd | 2 lares-5.0.2/lares/man/fb_process.Rd | 2 lares-5.0.2/lares/man/fb_rf.Rd | 92 - lares-5.0.2/lares/man/fb_token.Rd | 4 lares-5.0.2/lares/man/figures/logo.png |only lares-5.0.2/lares/man/figures/titanic_df.png |binary lares-5.0.2/lares/man/files_functions.Rd | 2 lares-5.0.2/lares/man/forecast_arima.Rd | 26 lares-5.0.2/lares/man/formatNum.Rd | 5 lares-5.0.2/lares/man/formatText.Rd | 22 lares-5.0.2/lares/man/freqs.Rd | 11 lares-5.0.2/lares/man/freqs_df.Rd | 5 lares-5.0.2/lares/man/freqs_list.Rd | 19 lares-5.0.2/lares/man/freqs_plot.Rd | 7 lares-5.0.2/lares/man/gain_lift.Rd | 12 lares-5.0.2/lares/man/get_credentials.Rd | 14 lares-5.0.2/lares/man/get_currency.Rd | 2 lares-5.0.2/lares/man/get_mp3.Rd | 16 lares-5.0.2/lares/man/gg_bars.Rd | 36 lares-5.0.2/lares/man/glued.Rd | 10 lares-5.0.2/lares/man/grepl_letters.Rd | 8 lares-5.0.2/lares/man/grepm.Rd | 2 lares-5.0.2/lares/man/h2o_automl.Rd | 41 lares-5.0.2/lares/man/h2o_explainer.Rd | 10 lares-5.0.2/lares/man/h2o_predict_MOJO.Rd | 6 lares-5.0.2/lares/man/h2o_predict_binary.Rd | 4 lares-5.0.2/lares/man/h2o_results.Rd | 6 lares-5.0.2/lares/man/h2o_shap.Rd | 12 lares-5.0.2/lares/man/haveInternet.Rd | 2 lares-5.0.2/lares/man/holidays.Rd | 6 lares-5.0.2/lares/man/install_recommended.Rd | 6 lares-5.0.2/lares/man/ip_data.Rd | 2 lares-5.0.2/lares/man/is_url.Rd | 14 lares-5.0.2/lares/man/json2vector.Rd | 2 lares-5.0.2/lares/man/lares.Rd | 3 lares-5.0.2/lares/man/lasso_vars.Rd | 20 lares-5.0.2/lares/man/left.Rd | 2 lares-5.0.2/lares/man/li_auth.Rd | 2 lares-5.0.2/lares/man/list_cats.Rd | 4 lares-5.0.2/lares/man/loglossBinary.Rd | 4 lares-5.0.2/lares/man/mailSend.Rd | 14 lares-5.0.2/lares/man/missingness.Rd | 10 lares-5.0.2/lares/man/model_metrics.Rd | 48 lares-5.0.2/lares/man/model_preprocess.Rd | 12 lares-5.0.2/lares/man/move_files.Rd | 2 lares-5.0.2/lares/man/mplot_conf.Rd | 14 lares-5.0.2/lares/man/mplot_cuts_error.Rd | 3 lares-5.0.2/lares/man/mplot_density.Rd | 6 lares-5.0.2/lares/man/mplot_full.Rd | 23 lares-5.0.2/lares/man/mplot_gain.Rd | 31 lares-5.0.2/lares/man/mplot_importance.Rd | 26 lares-5.0.2/lares/man/mplot_response.Rd | 25 lares-5.0.2/lares/man/mplot_roc.Rd | 18 lares-5.0.2/lares/man/mplot_splits.Rd | 14 lares-5.0.2/lares/man/mplot_topcats.Rd | 7 lares-5.0.2/lares/man/msplit.Rd | 6 lares-5.0.2/lares/man/ngrams.Rd | 8 lares-5.0.2/lares/man/noPlot.Rd | 42 lares-5.0.2/lares/man/normalize.Rd | 4 lares-5.0.2/lares/man/num_abbr.Rd | 2 lares-5.0.2/lares/man/ohe_commas.Rd | 10 lares-5.0.2/lares/man/ohse.Rd | 17 lares-5.0.2/lares/man/outlier_turkey.Rd | 8 lares-5.0.2/lares/man/outlier_zscore.Rd | 12 lares-5.0.2/lares/man/outlier_zscore_plot.Rd | 2 lares-5.0.2/lares/man/plot_chord.Rd | 34 lares-5.0.2/lares/man/plot_df.Rd | 2 lares-5.0.2/lares/man/plot_survey.Rd | 3 lares-5.0.2/lares/man/plot_timeline.Rd | 79 - lares-5.0.2/lares/man/prophesize.Rd | 15 lares-5.0.2/lares/man/queryDB.Rd | 2 lares-5.0.2/lares/man/read.file.Rd | 2 lares-5.0.2/lares/man/readGS.Rd | 2 lares-5.0.2/lares/man/reduce_pca.Rd |only lares-5.0.2/lares/man/reduce_tsne.Rd |only lares-5.0.2/lares/man/remove_stopwords.Rd | 2 lares-5.0.2/lares/man/replaceall.Rd | 14 lares-5.0.2/lares/man/replacefactor.Rd | 2 lares-5.0.2/lares/man/scale_x_comma.Rd | 87 - lares-5.0.2/lares/man/scrabble_dictionary.Rd | 6 lares-5.0.2/lares/man/scrabble_score.Rd | 5 lares-5.0.2/lares/man/scrabble_words.Rd | 30 lares-5.0.2/lares/man/sentimentBreakdown.Rd | 8 lares-5.0.2/lares/man/shap_var.Rd | 8 lares-5.0.2/lares/man/slackSend.Rd | 2 lares-5.0.2/lares/man/splot_etf.Rd | 2 lares-5.0.2/lares/man/splot_roi.Rd | 2 lares-5.0.2/lares/man/spread_list.Rd | 7 lares-5.0.2/lares/man/statusbar.Rd | 4 lares-5.0.2/lares/man/stocks_file.Rd | 10 lares-5.0.2/lares/man/stocks_obj.Rd | 2 lares-5.0.2/lares/man/stocks_quote.Rd | 2 lares-5.0.2/lares/man/stocks_report.Rd | 10 lares-5.0.2/lares/man/sudoku_solver.Rd | 16 lares-5.0.2/lares/man/target_set.Rd | 4 lares-5.0.2/lares/man/textCloud.Rd | 2 lares-5.0.2/lares/man/textTokenizer.Rd | 6 lares-5.0.2/lares/man/theme_lares.Rd | 6 lares-5.0.2/lares/man/topics_rake.Rd | 2 lares-5.0.2/lares/man/tree_var.Rd | 98 + lares-5.0.2/lares/man/trendsRelated.Rd | 2 lares-5.0.2/lares/man/trim_mp3.Rd | 2 lares-5.0.2/lares/man/try_require.Rd | 2 lares-5.0.2/lares/man/vector2text.Rd | 9 lares-5.0.2/lares/man/winsorize.Rd | 6 lares-5.0.2/lares/man/writeGS.Rd | 2 lares-5.0.2/lares/man/x2y.Rd | 8 lares-5.0.2/lares/vignettes |only 216 files changed, 8405 insertions(+), 7408 deletions(-)
Title: Easy Interface to the Statistical Disclosure Control Package
'sdcTable' Extended with the 'GaussSuppression' Method
Description: The main function, ProtectTable(), performs table suppression according to a
frequency rule with a data set as the only required input. Within this function,
protectTable(), protect_linked_tables() or runArgusBatchFile() in package 'sdcTable' is called.
Lists of level-hierarchy (parameter 'dimList') and other required input to these functions
are created automatically.
The suppression method Gauss (default) is an additional method that is not available in 'sdcTable'.
The function, PTgui(), starts a graphical user interface based on the 'shiny' package.
Author: Øyvind Langsrud [aut, cre]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between easySdcTable versions 0.8.0 dated 2021-08-12 and 0.9.0 dated 2021-09-10
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 2 ++ NEWS.md | 6 ++++++ R/ProtectTable.R | 25 ++++++++++++++++++------- tests/testthat/test-ProtectTable.R | 12 ++++++++++++ 6 files changed, 49 insertions(+), 18 deletions(-)
Title: Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries
Description: Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database
from the downloaded images. 'parseRPDR' currently supports txt sources: "mrn", "con", "dem", "enc", "rdt", "lab",
"med", "dia", "rfv", "prc", "phy", "lno", "car", "dis", "end", "hnp", "opn", "pat", "prg", "pul", "rad" and "vis".
All functionalities are parallelized for fast and efficient analyses.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <mkolossvary@mgh.harvard.edu>
Diff between parseRPDR versions 0.2.0 dated 2021-07-24 and 0.2.1 dated 2021-09-10
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 9 +++++++++ R/load_con.R | 3 +-- R/load_dem.R | 3 +-- R/load_dia.R | 3 +-- R/load_enc.R | 3 +-- R/load_lab.R | 3 +-- R/load_lno.R | 2 +- R/load_med.R | 3 +-- R/load_mrn.R | 3 +-- R/load_notes.R | 9 ++++++--- R/load_phy.R | 3 +-- R/load_prc.R | 3 +-- R/load_rdt.R | 3 +-- R/load_rfv.R | 3 +-- 16 files changed, 46 insertions(+), 45 deletions(-)
Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform, the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library. The Gabor Feature Extraction functions are based on 'Matlab' code of the paper, "CloudID: Trustworthy cloud-based and cross-enterprise biometric identification" by M. Haghighat, S. Zonouz, M. Abdel-Mottaleb, Expert Systems with Applications, vol. 42, no. 21, pp. 7905-7916, 2015, <doi:10.1016/j.eswa.2015.06.025>. The 'SLIC' and 'SLICO' superpixel algorithms were explained in detail in (i) "SLIC Superpixels Compared to State-of-the-art Superpixel Methods", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 34, num. 11, p. 2274-2282, May 2012, <doi:10.1109/TPAMI.2012.120> and (ii) "SLIC Superpixels", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, EPFL Technical Report no. 149300, June 2010.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>),
Sight Machine [cph] (findHOGFeatures function of the SimpleCV computer
vision platform),
Johannes Buchner [cph] (average_hash, dhash and phash functions of the
ImageHash python library),
Mohammad Haghighat [cph] (Gabor Feature Extraction),
Radhakrishna Achanta [cph] (Author of the C++ code of the SLIC and
SLICO algorithms (for commercial use please contact the author))
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between OpenImageR versions 1.1.9 dated 2021-05-21 and 1.2.0 dated 2021-09-10
DESCRIPTION | 8 - MD5 | 18 +-- NEWS.md | 5 README.md | 2 inst/doc/Gabor_Feature_Extraction.html | 4 inst/doc/Image_segmentation_superpixels_clustering.html | 4 inst/doc/The_OpenImageR_package.html | 18 +-- inst/include/OpenImageRheader.h | 17 ++ src/RcppExports.cpp | 5 tests/testthat/test-resize_nearest.R | 93 ++++++++++------ 10 files changed, 110 insertions(+), 64 deletions(-)
Title: Tools for Multiple Imputation in Multilevel Modeling
Description: Provides tools for multiple imputation of missing data in multilevel
modeling. Includes a user-friendly interface to the packages 'pan' and 'jomo',
and several functions for visualization, data management and the analysis
of multiply imputed data sets.
Author: Simon Grund [aut,cre], Alexander Robitzsch [aut], Oliver Luedtke [aut]
Maintainer: Simon Grund <grund@ipn.uni-kiel.de>
Diff between mitml versions 0.4-1 dated 2021-02-05 and 0.4-2 dated 2021-09-10
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 11 +++++++++++ R/internal-methods-likelihood.R | 8 +++++--- R/internal-zzz.R | 5 +++-- R/print.mitml.testModels.R | 9 +++++++-- R/testModels.R | 14 +++++++++----- build/vignette.rds |binary inst/doc/Analysis.html | 21 ++++++++++++++------- inst/doc/Introduction.html | 11 +++++++++-- inst/doc/Level2.html | 11 +++++++++-- 11 files changed, 81 insertions(+), 37 deletions(-)
Title: Administrative Boundaries of Spain
Description: Administrative Boundaries of Spain at several levels (CCAA,
Provinces, Municipalities) based on the GISCO Eurostat database
<https://ec.europa.eu/eurostat/web/gisco> and 'CartoBase SIANE' from
'Instituto Geografico Nacional' <https://www.ign.es/>. It also
provides a 'leaflet' plugin and the ability of downloading and
processing static tiles.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>, rOpenSpain),
EuroGeographics [cph] (for the administrative boundaries.),
Instituto Geográfico Nacional [cph] (for the administrative
boundaries.)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between mapSpain versions 0.3.0 dated 2021-09-01 and 0.3.1 dated 2021-09-10
DESCRIPTION | 13 + MD5 | 123 ++++++++-------- NAMESPACE | 1 NEWS.md | 6 R/addProviderEspTiles.R | 15 - R/data.R | 20 +- R/esp_cache.R | 109 ++++++++++---- R/esp_cache_clear.R |only R/esp_dict.R | 6 R/esp_getTiles.R | 10 - R/esp_get_can_box.R | 33 ++-- R/esp_get_capimun.R | 22 +- R/esp_get_ccaa.R | 25 +-- R/esp_get_country.R | 3 R/esp_get_gridmap.R | 9 - R/esp_get_hydrobasin.R | 2 R/esp_get_hypsobath.R | 4 R/esp_get_munic.R | 43 ++--- R/esp_get_nuts.R | 29 +-- R/esp_get_prov.R | 29 +-- R/esp_get_railway.R | 7 R/esp_get_rivers.R | 2 R/esp_get_roads.R | 37 ++-- R/utils_names.R | 42 ++--- R/utils_siane.R | 22 +- R/utils_tiles.R | 4 README.md | 13 - inst/CITATION | 10 - inst/WORDLIST |only inst/doc/mapSpain.R | 14 - inst/doc/mapSpain.Rmd | 6 inst/doc/mapSpain.html | 6 inst/examples/esp_munic_sf.R | 10 - man/addProviderEspTiles.Rd | 9 - man/esp_clear_cache.Rd |only man/esp_codelist.Rd | 22 ++ man/esp_dict.Rd | 9 + man/esp_getTiles.Rd | 11 - man/esp_get_can_box.Rd | 13 + man/esp_get_capimun.Rd | 15 + man/esp_get_ccaa.Rd | 11 + man/esp_get_country.Rd | 10 + man/esp_get_gridmap.Rd | 10 + man/esp_get_hydrobasin.Rd | 5 man/esp_get_hypsobath.Rd | 4 man/esp_get_munic.Rd | 18 ++ man/esp_get_nuts.Rd | 18 +- man/esp_get_prov.Rd | 11 + man/esp_get_railway.Rd | 6 man/esp_get_rivers.Rd | 5 man/esp_get_roads.Rd | 3 man/esp_munic.sf.Rd | 23 ++- man/esp_nuts.sf.Rd | 10 + man/esp_set_cache_dir.Rd | 34 ++-- man/leaflet.providersESP.df.Rd | 11 + man/mapSpain-package.Rd | 2 man/pobmun19.Rd | 7 tests/testthat/test-addProviderEspTiles.R | 52 +++--- tests/testthat/test-esp_get_capimun.R | 68 ++++----- tests/testthat/test-esp_get_ccaa.R | 190 ++++++++++++------------- tests/testthat/test-esp_get_munic.R | 110 +++++++------- tests/testthat/test-esp_get_nuts.R | 98 ++++++------- tests/testthat/test-esp_get_prov.R | 226 +++++++++++++++--------------- vignettes/mapSpain.Rmd | 6 64 files changed, 949 insertions(+), 743 deletions(-)
Title: Fast Extraction from Raster Datasets using Polygons
Description: Provides a replacement for the 'extract' function from the 'raster' package
that is suitable for extracting raster values using 'sf' polygons.
Author: Daniel Baston [aut, cre],
ISciences, LLC [cph]
Maintainer: Daniel Baston <dbaston@isciences.com>
Diff between exactextractr versions 0.6.1 dated 2021-05-10 and 0.7.0 dated 2021-09-10
DESCRIPTION | 8 - MD5 | 40 ++++---- NEWS.md | 8 + R/coverage_fraction.R | 6 - R/exact_extract.R | 110 ++++++++++++++++-------- R/exact_extract_helpers.R | 95 ++++++++++++++++++++ R/exact_resample.R | 75 ++++++++++------ build/vignette.rds |binary configure | 18 +-- man/exact_extract.Rd | 132 ++++++++++++++++++++++++++++- man/exact_resample.Rd | 12 +- src/Makevars.ucrt | 15 --- src/RcppExports.cpp | 5 + src/exactextract/src/raster.h | 2 src/exactextract/src/raster_stats.h | 29 +++++- src/raster_utils.cpp | 19 ++-- src/resample.cpp | 6 - src/s4_raster_source.h | 11 +- tests/testthat/test_exact_extract.R | 82 +++++++++++++++++- tests/testthat/test_exact_extract_terra.R |only tests/testthat/test_exact_resample.R | 10 ++ tests/testthat/test_exact_resample_terra.R |only 22 files changed, 540 insertions(+), 143 deletions(-)
Title: Nonparametric, Tuning-Free Estimation of S-Shaped Functions
Description: Estimation of an S-shaped function and its corresponding inflection point via a least squares approach. A sequential mixed primal-dual based algorithm is implemented for the fast computation. Details can be found in Feng et al. (2021) <arXiv:2107.07257>.
Author: Oliver Y. Feng [aut],
Yining Chen [aut, cre],
Qiyang Han [aut],
Raymond J. Carroll [aut],
Richard J. Samworth [aut]
Maintainer: Yining Chen <y.chen101@lse.ac.uk>
Diff between Sshaped versions 0.99 dated 2021-03-02 and 1.0 dated 2021-09-10
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- build/partial.rdb |binary man/Sshaped-package.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Quadratic Root for any Quadratic Equation
Description: It will assist the user to find simple quadratic roots from any quadratic equation.
Author: Pankaj Das
Maintainer: Pankaj Das <pankaj.das2@icar.gov.in>
Diff between QuadRoot versions 0.1.0 dated 2021-01-09 and 0.2.0 dated 2021-09-10
DESCRIPTION | 7 +++---- MD5 | 6 +++--- R/QuadRoot.R | 28 +++++++++++++++++++--------- man/QuadRoot.Rd | 2 +- 4 files changed, 26 insertions(+), 17 deletions(-)
Title: Computes Danish Pesticide Load Indicator
Description: Computes the Danish Pesticide Load Indicator as described in Kudsk et al. (2018) <doi:10.1016/j.landusepol.2017.11.010> and Moehring et al. (2019) <doi:10.1016/j.scitotenv.2018.07.287> for pesticide use data. Additionally offers the possibility to directly link pesticide use data to pesticide properties given access to the Pesticide properties database (Lewis et al., 2016) <doi:10.1080/10807039.2015.1133242>.
Author: Niklas Moehring [aut, cre] (<https://orcid.org/0000-0003-0292-4402>),
Leonie Vidensky [aut],
Robert Finger [aut],
Per Kudsk [aut],
Lise Nistrup Jørgensen [aut],
Jens Erik Ørum [aut],
Uwe Schmitt [ctb]
Maintainer: Niklas Moehring <niklas.moehring@mtec.ethz.ch>
Diff between PesticideLoadIndicator versions 1.1.0 dated 2021-08-13 and 1.2.0 dated 2021-09-10
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 6 +++++- R/compute_load_indicator.R | 23 ++++++++++++++--------- R/match_ppdb.R | 6 +++++- man/compute_risk_score.Rd | 3 ++- man/match.ppdb.Rd | 3 +++ 7 files changed, 39 insertions(+), 22 deletions(-)
More information about PesticideLoadIndicator at CRAN
Permanent link
Title: Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code
Description: Allows performing forwards prediction for the General Unified
Threshold model of Survival using compiled ode code. This package
was created to avoid dependency with the 'morse' package that requires
the installation of 'JAGS'. This package is based on functions from
the 'morse' package v3.3.1: Virgile Baudrot, Sandrine Charles,
Marie Laure Delignette-Muller, Wandrille Duchemin, Benoit Goussen,
Nils Kehrein, Guillaume Kon-Kam-King, Christelle Lopes, Philippe Ruiz,
Alexander Singer and Philippe Veber (2021) <https://CRAN.R-project.org/package=morse>.
Author: Benoit Goussen [aut, cre] (<https://orcid.org/0000-0001-7204-7981>)
Maintainer: Benoit Goussen <benoit.goussen@ibacon.com>
Diff between odeGUTS versions 1.0.0 dated 2021-08-13 and 1.0.1 dated 2021-09-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/importFromMorse.R | 12 ++++++------ README.md | 2 ++ man/predict.Rd | 8 ++++---- 6 files changed, 25 insertions(+), 18 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
RStudio [cph]
Maintainer: Hannah Frick <hannah@rstudio.com>
Diff between dials versions 0.0.9 dated 2020-09-16 and 0.0.10 dated 2021-09-10
DESCRIPTION | 46 +-- LICENSE |only MD5 | 61 ++-- NAMESPACE | 21 + NEWS.md | 32 ++ R/finalize.R | 2 R/grids.R | 6 R/param_adjust_reg_free.R |only R/param_engine_party.R |only R/param_engine_sda.R |only R/param_engine_xgboost.R |only R/param_mixture.R | 2 R/param_momentum.R |only R/param_regularization_method.R |only R/param_select_features.R |only R/param_sparse_bayes_pca.R |only R/param_stop_iter.R |only R/parameters.R | 16 - README.md | 26 - build/vignette.rds |binary inst/doc/Basics.Rmd | 19 - inst/doc/Basics.html | 568 +++++++++++---------------------------- man/adjust_deg_free.Rd |only man/conditional_min_criterion.Rd |only man/dials-package.Rd | 7 man/finalize.Rd | 3 man/grid_max_entropy.Rd | 6 man/grid_regular.Rd | 11 man/momentum.Rd |only man/parameters.Rd | 3 man/prior_slab_dispersion.Rd |only man/regularization_method.Rd |only man/rmd/rand_notes.md | 2 man/select_features.Rd |only man/shrinkage_correlation.Rd |only man/stop_iter.Rd |only man/xgboost_parameters.Rd |only tests/testthat/test_grid.R | 8 tests/testthat/test_object.RData |binary tests/testthat/test_params.R | 18 + vignettes/Basics.Rmd | 19 - 41 files changed, 359 insertions(+), 517 deletions(-)
Title: User Friendly Bayesian Data Analysis for Psychology
Description: Contains several Bayesian models for data analysis of psychological tests. A user friendly interface for these models should enable students and researchers to perform professional level Bayesian data analysis without advanced knowledge in programming and Bayesian statistics. This package is based on the Stan platform (Carpenter et el. 2017 <doi:10.18637/jss.v076.i01>).
Author: Jure Demšar [cre, aut],
Grega Repovš [aut],
Erik Štrumbelj [aut],
Trustees of Columbia University [cph],
John Kruschke [cph] (R/shared_functions.R - mcmc_hdi,
src/stan_files/ttest.stan),
Rasmus Baath [cph] (R/b_bootstrap.R)
Maintainer: Jure Demšar <jure.demsar@fri.uni-lj.si>
Diff between bayes4psy versions 1.2.6 dated 2021-04-26 and 1.2.7 dated 2021-09-10
DESCRIPTION | 6 +- MD5 | 20 ++++--- NEWS.md | 100 ++++++++++++------------------------ README.md | 2 configure |only configure.win |only inst/doc/adaptation_level.html | 32 +++++------ inst/doc/afterimages.html | 20 +++---- inst/doc/flanker.html | 112 ++++++++++++++++++++--------------------- inst/doc/stroop.html | 38 ++++++------- src/Makevars | 3 + src/Makevars.win | 4 + 12 files changed, 156 insertions(+), 181 deletions(-)
Title: Manipulate, Validate and Resolve 'IP' Addresses
Description: A toolkit for manipulating, validating and testing 'IP' addresses and
ranges, along with datasets relating to 'IP' addresses. Tools are also provided
to map 'IPv4' blocks to country codes. While it primarily has support for the 'IPv4'
address space, more extensive 'IPv6' support is intended.
Author: Bob Rudis <bob@rud.is> [aut, cre],
Oliver Keyes <ironholds@gmail.com> [aut],
Tim Smith [ctb]
Maintainer: Bob Rudis <bob@rud.is>
Diff between iptools versions 0.6.1 dated 2018-12-09 and 0.7.2 dated 2021-09-10
iptools-0.6.1/iptools/inst/test/rib.tst.gz |only iptools-0.7.2/iptools/DESCRIPTION | 12 iptools-0.7.2/iptools/MD5 | 68 +- iptools-0.7.2/iptools/NAMESPACE | 4 iptools-0.7.2/iptools/R/RcppExports.R | 27 iptools-0.7.2/iptools/R/cidr.r | 17 iptools-0.7.2/iptools/R/country_ranges.R | 10 iptools-0.7.2/iptools/R/dataset_refreshers.R | 6 iptools-0.7.2/iptools/R/datasets.R | 14 iptools-0.7.2/iptools/R/ip-to-subnet.R |only iptools-0.7.2/iptools/R/ip6-to-nibble.R |only iptools-0.7.2/iptools/R/iptools-package.R | 1 iptools-0.7.2/iptools/build/vignette.rds |binary iptools-0.7.2/iptools/inst/doc/introduction_to_iptools.R | 16 iptools-0.7.2/iptools/inst/doc/introduction_to_iptools.Rmd | 2 iptools-0.7.2/iptools/inst/doc/introduction_to_iptools.html | 338 +++--------- iptools-0.7.2/iptools/inst/doc/iptools_datasets.R | 2 iptools-0.7.2/iptools/inst/doc/iptools_datasets.html | 316 +++-------- iptools-0.7.2/iptools/inst/test/rib.tst |only iptools-0.7.2/iptools/man/asn_table_to_trie.Rd | 2 iptools-0.7.2/iptools/man/country_ranges.Rd | 4 iptools-0.7.2/iptools/man/expand_ipv6.Rd | 3 iptools-0.7.2/iptools/man/get_all_country_ranges.Rd | 2 iptools-0.7.2/iptools/man/iana_assignments.Rd | 8 iptools-0.7.2/iptools/man/iana_ports.Rd | 8 iptools-0.7.2/iptools/man/iana_special_assignments.Rd | 10 iptools-0.7.2/iptools/man/ip_to_asn.Rd | 2 iptools-0.7.2/iptools/man/ip_to_subnet.Rd |only iptools-0.7.2/iptools/man/iptools.Rd | 1 iptools-0.7.2/iptools/man/ipv6_to_bytes.Rd |only iptools-0.7.2/iptools/man/ipv6_to_nibble.Rd |only iptools-0.7.2/iptools/src/RcppExports.cpp | 30 + iptools-0.7.2/iptools/src/asio_bindings.cpp | 3 iptools-0.7.2/iptools/src/asio_bindings.h | 4 iptools-0.7.2/iptools/src/iptools.cpp | 65 ++ iptools-0.7.2/iptools/tests/testthat/test-cidr-ops.R | 4 iptools-0.7.2/iptools/tests/testthat/test-v6.R |only iptools-0.7.2/iptools/tests/testthat/test_ip_conversion.R | 14 iptools-0.7.2/iptools/vignettes/introduction_to_iptools.Rmd | 2 39 files changed, 433 insertions(+), 562 deletions(-)
Title: Bayesian Global Vector Autoregressions
Description: Estimation of Bayesian Global Vector Autoregressions (BGVAR) with different prior setups and the possibility to introduce stochastic volatility. Built-in priors include the Minnesota, the stochastic search variable selection and Normal-Gamma (NG) prior. For a reference see also Crespo Cuaresma, J., Feldkircher, M. and F. Huber (2016) "Forecasting with Global Vector Autoregressive Models: a Bayesian Approach", Journal of Applied Econometrics, Vol. 31(7), pp. 1371-1391 <doi:10.1002/jae.2504>. Post-processing functions allow for doing predictions, structurally identify the model with short-run or sign-restrictions and compute impulse response functions, historical decompositions and forecast error variance decompositions. Plotting functions are also available.
Author: Maximilian Boeck [aut, cre] (<https://orcid.org/0000-0001-6024-8305>),
Martin Feldkircher [aut] (<https://orcid.org/0000-0002-5511-9215>),
Florian Huber [aut] (<https://orcid.org/0000-0002-2896-7921>),
Darjus Hosszejni [ctb] (<https://orcid.org/0000-0002-3803-691X>)
Maintainer: Maximilian Boeck <maximilian.boeck@wu.ac.at>
Diff between BGVAR versions 2.3.0 dated 2021-08-10 and 2.3.1 dated 2021-09-10
BGVAR-2.3.0/BGVAR/man/DIC.Rd |only BGVAR-2.3.1/BGVAR/DESCRIPTION | 6 - BGVAR-2.3.1/BGVAR/MD5 | 60 ++++++++-------- BGVAR-2.3.1/BGVAR/NAMESPACE | 6 - BGVAR-2.3.1/BGVAR/NEWS | 7 + BGVAR-2.3.1/BGVAR/R/BGVAR.R | 110 ++++++++++++++++++++++++------- BGVAR-2.3.1/BGVAR/R/helpers.R | 70 +++---------------- BGVAR-2.3.1/BGVAR/R/irf.R | 4 - BGVAR-2.3.1/BGVAR/R/plot.R | 12 +-- BGVAR-2.3.1/BGVAR/R/predict.R | 20 ++--- BGVAR-2.3.1/BGVAR/R/utils.R | 9 +- BGVAR-2.3.1/BGVAR/inst/doc/examples.html | 32 ++++----- BGVAR-2.3.1/BGVAR/man/avg.pair.cc.Rd | 2 BGVAR-2.3.1/BGVAR/man/bgvar.Rd | 2 BGVAR-2.3.1/BGVAR/man/coef.Rd | 7 + BGVAR-2.3.1/BGVAR/man/conv.diag.Rd | 1 BGVAR-2.3.1/BGVAR/man/dic.Rd |only BGVAR-2.3.1/BGVAR/man/excel_to_list.Rd | 2 BGVAR-2.3.1/BGVAR/man/fitted.Rd | 9 +- BGVAR-2.3.1/BGVAR/man/irf.Rd | 2 BGVAR-2.3.1/BGVAR/man/list_to_matrix.Rd | 2 BGVAR-2.3.1/BGVAR/man/logLik.Rd | 9 +- BGVAR-2.3.1/BGVAR/man/lps.Rd | 6 - BGVAR-2.3.1/BGVAR/man/matrix_to_list.Rd | 2 BGVAR-2.3.1/BGVAR/man/plot.Rd | 8 +- BGVAR-2.3.1/BGVAR/man/predict.Rd | 10 +- BGVAR-2.3.1/BGVAR/man/resid.corr.test.Rd | 10 +- BGVAR-2.3.1/BGVAR/man/residuals.Rd | 12 +-- BGVAR-2.3.1/BGVAR/man/rmse.Rd | 4 - BGVAR-2.3.1/BGVAR/man/summary.Rd | 4 - BGVAR-2.3.1/BGVAR/man/vcov.Rd | 9 +- BGVAR-2.3.1/BGVAR/src/RcppExports.cpp | 5 + 32 files changed, 241 insertions(+), 201 deletions(-)
Title: 'anndata' for R
Description: A 'reticulate' wrapper for the Python package 'anndata'.
Provides a scalable way of keeping track of data and learned
annotations. Used to read from and write to the h5ad file format.
Author: Philipp Angerer [ccp] (<https://orcid.org/0000-0002-0369-2888>,
flying-sheep),
Alex Wolf [ccp] (<https://orcid.org/0000-0002-8760-7838>, falexwolf),
Isaac Virshup [ccp] (ivirshup),
Sergei Rybakov [ccp] (Koncopd),
Robrecht Cannoodt [aut, cre, cph]
(<https://orcid.org/0000-0003-3641-729X>, rcannood)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between anndata versions 0.7.5.2 dated 2021-03-28 and 0.7.5.3 dated 2021-09-10
DESCRIPTION | 14 +++++++------- MD5 | 36 ++++++++++++++++++------------------ NAMESPACE | 2 +- NEWS.md | 6 ++++++ R/class_anndata.R | 8 ++++---- R/class_layers.R | 2 +- R/concat.R | 4 +--- R/reticulate_conversions.R | 16 +++++++++++++--- R/write_csvs.R | 5 +++-- R/write_h5ad.R | 4 ++-- R/write_loom.R | 4 ++-- R/write_zarr.R | 4 ++-- README.md | 11 +++++++++-- build/vignette.rds |binary inst/doc/getting_started.html | 9 +++++---- inst/doc/scanpy_demo.html | 1 + tests/testthat/helper-gen_adata.R | 4 ++-- tests/testthat/test-anndata.R | 17 +++++++++++++++++ tests/testthat/test-base.R | 8 ++++---- 19 files changed, 98 insertions(+), 57 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-23 0.2.1
2020-09-16 0.1.0
Title: Tipping Point Analyses
Description: The strength of evidence provided by epidemiological and observational
studies is inherently limited by the potential for unmeasured confounding.
We focus on three key quantities: the observed bound of the confidence interval
closest to the null, a plausible residual effect size for an unmeasured continuous
or binary confounder, and a realistic mean difference or prevalence difference for
this hypothetical confounder. Building on the methods put forth by
Lin, Psaty, & Kronmal (1998) <doi:10.2307/2533848>, we can use these quantities to
assess how an unmeasured confounder may tip our result to insignificance, rendering the
study inconclusive.
Author: Lucy D'Agostino McGowan
Maintainer: Lucy D'Agostino McGowan <lucydagostino@gmail.com>
Diff between tipr versions 0.2.0 dated 2020-11-16 and 0.3.0 dated 2021-09-10
DESCRIPTION | 9 ++++----- MD5 | 24 ++++++++++++++++++------ NAMESPACE | 5 +++++ NEWS.md | 4 ++++ R/lm_tip.R |only R/observed-bias-plot-helpers.R |only R/observed_bias_order.R |only R/observed_bias_tbl.R |only R/observed_bias_tip.R |only R/observed_covariate_e_value.R |only R/tip-helpers.R | 25 ++++++++++++++++++++++--- R/tip.R | 2 +- man/lm_tip.Rd |only man/observed_bias_order.Rd |only man/observed_bias_tbl.Rd |only man/observed_bias_tip.Rd |only man/observed_covariate_e_value.Rd |only man/tip.Rd | 2 +- tests/testthat/test-obp-helpers.R |only 19 files changed, 55 insertions(+), 16 deletions(-)
Title: River Network Distance Computation and Applications
Description: Reads river network shape files and computes network distances.
Also included are a variety of computation and graphical tools designed
for fisheries telemetry research, such as minimum home range, kernel density
estimation, and clustering analysis using empirical k-functions with
a bootstrap envelope. Tools are also provided for editing the river
networks, meaning there is no reliance on external software.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between riverdist versions 0.15.3 dated 2020-07-02 and 0.15.4 dated 2021-09-10
DESCRIPTION | 14 MD5 | 10 NEWS.md | 4 build/vignette.rds |binary inst/doc/riverdist_vignette.html | 678 ++++++++++++++------------------------- man/riverdist-package.Rd | 6 6 files changed, 278 insertions(+), 434 deletions(-)
Title: Modelling Spatial Variation in Disease Risk for Areal Data
Description: Formatting of population and case data, calculation of Standardized
Incidence Ratios, and fitting the BYM model using 'INLA'. For details see Brown (2015) <doi:10.18637/jss.v063.i12>.
Author: Patrick Brown <patrick.brown@utoronto.ca>, Lutong Zhou
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between diseasemapping versions 1.5.0 dated 2021-03-11 and 1.5.1 dated 2021-09-10
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- build/diseasemapping.pdf |binary build/vignette.rds |binary data/casedata.RData |binary data/kentucky.RData |binary data/kentuckyTract.RData |binary data/popdata.RData |binary data/referencepop.RData |binary inst/doc/bym.pdf |binary 10 files changed, 16 insertions(+), 16 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Title: Create Consort Diagram
Description: To make it easy to create CONSORT diagrams for the transparent reporting of participant allocation in randomized, controlled clinical trials. This is done by creating a standardized disposition data, and using this data as the source for the creation a standard CONSORT diagram. Human effort by supplying text labels on the node can also be achieved.
Author: Alim Dayim [aut, cre] (<https://orcid.org/0000-0001-9998-7463>)
Maintainer: Alim Dayim <ad938@cam.ac.uk>
Diff between consort versions 0.1.1 dated 2021-08-10 and 0.2.0 dated 2021-09-10
DESCRIPTION | 6 - MD5 | 27 ++-- NAMESPACE | 1 NEWS.md | 8 + R/boxgrob.R | 240 ++++++++++++++++++++++++++++-------------- R/methods.R | 1 inst/doc/consrot_diagram.R | 43 +++++++ inst/doc/consrot_diagram.Rmd | 46 +++++++- inst/doc/consrot_diagram.html | 62 +++++++++- man/add_box.Rd | 4 man/add_side_box.Rd | 5 man/box_text.Rd |only man/dot-add_box.Rd | 4 man/dot-add_side.Rd | 8 - vignettes/consrot_diagram.Rmd | 46 +++++++- 15 files changed, 386 insertions(+), 115 deletions(-)